Query psy15314
Match_columns 232
No_of_seqs 192 out of 375
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:51:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381|consensus 100.0 2E-39 4.3E-44 294.1 2.3 174 15-231 53-242 (286)
2 TIGR03843 conserved hypothetic 99.7 6.2E-17 1.3E-21 144.6 6.1 77 100-214 129-205 (253)
3 PF00454 PI3_PI4_kinase: Phosp 99.1 5.4E-12 1.2E-16 109.1 -0.7 108 68-222 98-205 (235)
4 PF07804 HipA_C: HipA-like C-t 96.9 0.0014 3.1E-08 48.5 4.3 32 100-131 37-68 (79)
5 KOG2381|consensus 96.7 0.00027 5.8E-09 65.2 -1.2 53 25-90 120-172 (286)
6 PF06702 DUF1193: Protein of u 96.2 0.0035 7.6E-08 56.0 2.9 82 26-127 32-113 (221)
7 KOG3829|consensus 93.2 0.078 1.7E-06 51.5 3.3 20 104-123 346-365 (486)
8 PRK09775 putative DNA-binding 86.8 0.83 1.8E-05 44.5 4.3 31 103-133 327-357 (442)
9 smart00146 PI3Kc Phosphoinosit 85.5 1.5 3.3E-05 37.7 4.8 33 97-129 84-116 (202)
10 KOG0905|consensus 78.3 0.42 9E-06 51.9 -1.5 91 27-131 1121-1213(1639)
11 cd05173 PI3Kc_IA_beta Phosphoi 77.2 2.5 5.3E-05 40.4 3.4 34 96-129 190-223 (362)
12 cd00892 PIKKc_ATR ATR (Ataxia 77.2 4.2 9.1E-05 36.2 4.7 37 97-133 122-158 (237)
13 cd05169 PIKKc_TOR TOR (Target 75.5 3.9 8.4E-05 37.0 4.1 36 98-133 165-200 (280)
14 cd00893 PI4Kc_III Phosphoinosi 72.4 5 0.00011 37.1 4.1 33 97-129 122-154 (289)
15 cd00142 PI3Kc_like Phosphoinos 71.7 6.8 0.00015 34.2 4.6 36 97-132 111-146 (219)
16 cd05175 PI3Kc_IA_alpha Phospho 71.3 3.7 8E-05 39.4 3.1 33 97-129 194-226 (366)
17 cd05174 PI3Kc_IA_delta Phospho 71.1 4.4 9.6E-05 38.8 3.5 33 97-129 191-223 (361)
18 cd05164 PIKKc Phosphoinositide 69.8 8.1 0.00018 34.0 4.7 37 97-133 114-150 (222)
19 cd00891 PI3Kc Phosphoinositide 68.8 8.9 0.00019 36.4 5.0 33 97-129 186-218 (352)
20 cd00896 PI3Kc_III Phosphoinosi 68.5 7 0.00015 37.1 4.2 34 96-129 184-217 (350)
21 cd05168 PI4Kc_III_beta Phospho 68.2 7.4 0.00016 36.1 4.2 34 97-130 124-157 (293)
22 cd05171 PIKKc_ATM Ataxia telan 67.7 9.4 0.0002 34.7 4.8 36 98-133 165-200 (279)
23 cd05176 PI3Kc_C2_alpha Phospho 65.0 9.6 0.00021 36.4 4.4 33 97-129 185-217 (353)
24 cd00894 PI3Kc_IB_gamma Phospho 64.1 9.2 0.0002 36.7 4.1 33 97-129 195-227 (365)
25 cd05172 PIKKc_DNA-PK DNA-depen 62.8 11 0.00024 33.5 4.2 37 97-133 119-155 (235)
26 cd05165 PI3Kc_I Phosphoinositi 62.1 11 0.00023 36.3 4.1 32 98-129 196-227 (366)
27 cd05177 PI3Kc_C2_gamma Phospho 60.9 12 0.00027 35.6 4.3 32 98-129 187-218 (354)
28 cd00895 PI3Kc_C2_beta Phosphoi 59.7 10 0.00023 36.2 3.6 34 96-129 185-218 (354)
29 cd05167 PI4Kc_III_alpha Phosph 59.2 13 0.00028 34.8 4.1 34 97-130 143-176 (311)
30 cd05166 PI3Kc_II Phosphoinosit 58.6 15 0.00032 35.0 4.4 33 97-129 185-217 (353)
31 cd05170 PIKKc_SMG1 Suppressor 54.8 21 0.00045 33.0 4.6 36 98-133 193-228 (307)
32 cd05124 AFK Actin-Fragmin Kina 51.9 5.6 0.00012 36.1 0.4 29 104-132 122-160 (238)
33 cd05163 TRRAP TRansformation/t 51.1 36 0.00077 30.7 5.4 37 98-134 138-174 (253)
34 PHA00691 hypothetical protein 46.4 9.2 0.0002 27.9 0.7 14 25-38 19-32 (68)
35 PTZ00303 phosphatidylinositol 44.7 30 0.00065 37.0 4.3 33 99-131 1130-1162(1374)
36 KOG0904|consensus 34.8 21 0.00046 38.3 1.5 32 100-131 909-940 (1076)
37 KOG0903|consensus 34.5 47 0.001 35.1 3.9 52 97-180 678-729 (847)
38 PF09192 Act-Frag_cataly: Acti 34.4 27 0.00058 32.4 2.0 20 104-123 155-174 (275)
39 smart00667 LisH Lissencephaly 30.1 40 0.00087 19.6 1.7 15 104-119 4-18 (34)
40 KOG0902|consensus 22.1 1.1E+02 0.0024 34.9 4.2 32 98-129 1636-1667(1803)
41 TIGR03601 B_an_ocin probable h 21.0 42 0.00092 25.4 0.6 27 99-133 1-27 (79)
42 PF14692 DUF4462: Domain of un 20.9 44 0.00096 20.9 0.6 10 187-196 6-15 (28)
43 KOG2555|consensus 20.3 92 0.002 31.2 2.9 80 21-107 442-528 (588)
No 1
>KOG2381|consensus
Probab=100.00 E-value=2e-39 Score=294.12 Aligned_cols=174 Identities=36% Similarity=0.582 Sum_probs=141.8
Q ss_pred CCCCccccCCCcccceeeccccch-hhHHHHhhhc-CCCCChh-h--hhhhhhhhcc----------ccccccccccCCC
Q psy15314 15 GKSPVQLVQMPAVGSFQMFVDGYK-DAEFWLRRFE-LEPLPAG-L--ALSFQLQFER----------LVVGSFQMFVDGY 79 (232)
Q Consensus 15 gk~~~~~glppK~GSfQvfv~Gyk-dA~~~Lr~~~-~e~~P~~-~--~~~f~~~f~R----------~KvGSfQ~fvngy 79 (232)
|-...+.|++.-..|..+..+||. .|.++|.+|- ....|.+ . ..++...-++ .|+||+|+|+++|
T Consensus 53 ~~~~~~~g~~~~~~~~~v~~~g~~~E~aayLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~~ 132 (286)
T KOG2381|consen 53 GTKVLQRGQCGCKRSCLVGNSGYRSEAAAYLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEGY 132 (286)
T ss_pred cCchhhccccccccceeccCccccchhhhhccCccccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcCc
Confidence 344556677778899999999999 9999999984 1233332 1 2222222122 2999999999999
Q ss_pred CccccccccccCCCCChhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCCCcCCCCCCCcccccccccCCCCcccC
Q psy15314 80 KDAEFWLRRFDLEPLPAGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSGIERENEMQDATDWNVVD 159 (232)
Q Consensus 80 ~daD~wl~rfe~~~l~~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 159 (232)
+.+|+|+++|+. .||||||||||||+|||||+||||+|+.....
T Consensus 133 ~~~d~~~~~F~~------------~e~hkivvlD~ri~NtDRh~~N~lvk~~~~~~------------------------ 176 (286)
T KOG2381|consen 133 SAADYGLRRFEA------------EEVHKIVVLDIRIRNTDRHAGNWLVKKEPTLE------------------------ 176 (286)
T ss_pred cccceeEEeccc------------cccceeEEEEEEeeccCCCCCceeEEeccCcc------------------------
Confidence 999999999998 59999999999999999999999999997643
Q ss_pred cCceEEeeecCCccCCCCCCCCCCCCccccccccCCCCCCCHHHHHHhhhcccChHHHHHHhhc-cCeeeeee
Q psy15314 160 KADIRLAAIDNGLAFPFKHPDSWRAYPYHWAWLPQAKVPFSIETRDLVQPLLADMNFVQDLCNL-TPVQIFCT 231 (232)
Q Consensus 160 ~p~i~iaAIDNGLafP~kHpd~wr~ypf~W~~lP~a~~PFS~etr~~~lpllt~~~~~~~l~~~-l~~~~~~~ 231 (232)
.....+|||||||++|||+| |+|+|||||+.|||+++++|+||.++|++|++++|.+ ++++.+||
T Consensus 177 ---~~~~~~Dhgl~fP~~~~d~~----f~W~~~pqa~~pfs~~~~~yiL~~~~d~~~~r~l~~~~~~~~~~~~ 242 (286)
T KOG2381|consen 177 ---QAAILGDHGLCFPEKHPDEW----FEWLYWPQAKIPFSEEIVDYILDPLTDCNLLRELPEDLLRLFKVDT 242 (286)
T ss_pred ---cccccccCceeCcccCCccc----cchHHHHhhcccccHHHHhccCCcccCHHHHHHhHHHHHHHHhhch
Confidence 11223399999999999987 9999999999999999999999999999999999954 56666665
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=99.67 E-value=6.2e-17 Score=144.56 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCCCcCCCCCCCcccccccccCCCCcccCcCceEEeeecCCccCCCCCC
Q psy15314 100 LSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSGIERENEMQDATDWNVVDKADIRLAAIDNGLAFPFKHP 179 (232)
Q Consensus 100 ~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~p~i~iaAIDNGLafP~kHp 179 (232)
.+...+++||+|||++|.||||+.+|+|+..+ -++.+||||||||..+
T Consensus 129 h~d~~~l~riaVfDi~inNaDRk~GhiL~~~d-------------------------------g~l~~IDHGl~f~~~~- 176 (253)
T TIGR03843 129 HADHPQLRRMAVFDALVNNADRKGGHVLPGPD-------------------------------GRVWGVDHGVCFHVEP- 176 (253)
T ss_pred ccccHHHhhhhhheeeeecCCCCCCcEeEcCC-------------------------------CcEEEecCceecCCCC-
Confidence 34458999999999999999999999999642 1378999999999742
Q ss_pred CCCCCCccccccccCCCCCCCHHHHHHhhhcccCh
Q psy15314 180 DSWRAYPYHWAWLPQAKVPFSIETRDLVQPLLADM 214 (232)
Q Consensus 180 d~wr~ypf~W~~lP~a~~PFS~etr~~~lpllt~~ 214 (232)
-+.+..|+++++|||++++++|..|..+.
T Consensus 177 ------klrtvlW~wag~Pls~e~l~~i~~L~~~l 205 (253)
T TIGR03843 177 ------KLRTVLWGWAGEPLPAELLADLARLRDDL 205 (253)
T ss_pred ------cccccccccccCCCCHHHHHHHHHHHHhh
Confidence 25666788899999999999998886543
No 3
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.14 E-value=5.4e-12 Score=109.13 Aligned_cols=108 Identities=23% Similarity=0.287 Sum_probs=72.0
Q ss_pred cccccccccCCCCccccccccccCCCCChhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCCCcCCCCCCCccccc
Q psy15314 68 VVGSFQMFVDGYKDAEFWLRRFDLEPLPAGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSGIEREN 147 (232)
Q Consensus 68 KvGSfQ~fvngy~daD~wl~rfe~~~l~~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~~~~~n~~~~~~~~~ 147 (232)
+.++.+.|...+.+++.|. +..+.|..++.++.|+||++.|.|||++||||...
T Consensus 98 ~~~~~~~f~~~~~~~~~~~----------~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~---------------- 151 (235)
T PF00454_consen 98 KDGLRQYFLKSFPSAEEWF----------EARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK---------------- 151 (235)
T ss_dssp TTHHHHHHHHHSCTTHHHH----------HHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET----------------
T ss_pred cchHHHHHHhcCCChhhhH----------hhhHhhHHHHHHHhhceEEEeecCCCchhheeccc----------------
Confidence 6677777788877776663 25678999999999999999999999999999332
Q ss_pred ccccCCCCcccCcCceEEeeecCCccCCCCCCCCCCCCccccccccCCCCCCCHHHHHHhhhcccChHHHHHHhh
Q psy15314 148 EMQDATDWNVVDKADIRLAAIDNGLAFPFKHPDSWRAYPYHWAWLPQAKVPFSIETRDLVQPLLADMNFVQDLCN 222 (232)
Q Consensus 148 ~~~~~~~~~~~~~p~i~iaAIDNGLafP~kHpd~wr~ypf~W~~lP~a~~PFS~etr~~~lpllt~~~~~~~l~~ 222 (232)
.-+|.+||+|+||+.++...++..||.|.- +|++....+ |.-.......+..|.
T Consensus 152 --------------~g~~~hIDfg~~f~~~~~~~~e~vPFrLT~------~~~~~~~~~-l~~~~~~g~f~~~~~ 205 (235)
T PF00454_consen 152 --------------TGELIHIDFGFIFGGKHLPVPETVPFRLTR------NMVNAMGGY-LGPSGVEGLFRSSCE 205 (235)
T ss_dssp --------------TSEEEE--HSSCTTHHHGSSSS--SSTTHH------HHHHHTTTS-SSTSHHHHHHHHHHH
T ss_pred --------------cceeeeEEeHHhhhccccCCCCCCCeEeCH------HHHHHHhcc-CCCchhHhHHHHHHH
Confidence 145999999999996666778889999984 344443333 222333455555553
No 4
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.91 E-value=0.0014 Score=48.47 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCceEEEec
Q psy15314 100 LSFQIQFERLVVLDYIIRNTDRGNDNWLIKYT 131 (232)
Q Consensus 100 ~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~ 131 (232)
..-..++-+.+|++|+|.|||||..||=+-++
T Consensus 37 ~~~~~~l~~~~~fn~ligN~D~H~kN~s~l~~ 68 (79)
T PF07804_consen 37 AADVRELFRRLVFNYLIGNTDRHLKNFSFLYD 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTBS---CCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCcCCEEEEEc
Confidence 34458888999999999999999999999888
No 5
>KOG2381|consensus
Probab=96.69 E-value=0.00027 Score=65.17 Aligned_cols=53 Identities=36% Similarity=0.669 Sum_probs=46.5
Q ss_pred CcccceeeccccchhhHHHHhhhcCCCCChhhhhhhhhhhccccccccccccCCCCcccccccccc
Q psy15314 25 PAVGSFQMFVDGYKDAEFWLRRFELEPLPAGLALSFQLQFERLVVGSFQMFVDGYKDAEFWLRRFD 90 (232)
Q Consensus 25 pK~GSfQvfv~GykdA~~~Lr~~~~e~~P~~~~~~f~~~f~R~KvGSfQ~fvngy~daD~wl~rfe 90 (232)
.|+||||.||+||+.|..+++.|..+ +||++.+.+. .+.|+|+.+++|+-+..
T Consensus 120 ~k~gs~q~Fve~~~~~d~~~~~F~~~------------e~hkivvlD~-ri~NtDRh~~N~lvk~~ 172 (286)
T KOG2381|consen 120 SKIGSLQLFVEGYSAADYGLRRFEAE------------EVHKIVVLDI-RIRNTDRHAGNWLVKKE 172 (286)
T ss_pred cchhhHHHhhcCccccceeEEecccc------------ccceeEEEEE-EeeccCCCCCceeEEec
Confidence 79999999999999999999999544 7889999898 56999999999986654
No 6
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=96.21 E-value=0.0035 Score=55.95 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=46.0
Q ss_pred cccceeeccccchhhHHHHhhhcCCCCChhhhhhhhhhhccccccccccccCCCCccccccccccCCCCChhhhHHHHHH
Q psy15314 26 AVGSFQMFVDGYKDAEFWLRRFELEPLPAGLALSFQLQFERLVVGSFQMFVDGYKDAEFWLRRFDLEPLPAGLALSFQIQ 105 (232)
Q Consensus 26 K~GSfQvfv~GykdA~~~Lr~~~~e~~P~~~~~~f~~~f~R~KvGSfQ~fvngy~daD~wl~rfe~~~l~~~~~~~F~~q 105 (232)
.-||+++|+-++.-|.-..-+| ||=.+|.+.-.. ..+. .+.|-+. ..+ .++--.-.--.+
T Consensus 32 lEgs~~~~LP~~~~~~~~~~r~---Pw~RsY~~~~~a--------~WE~-~~~yC~~---vk~-----~~py~~g~rLld 91 (221)
T PF06702_consen 32 LEGSLAAFLPDLSLAPRKSWRS---PWRRSYSKRKKA--------EWET-DPNYCDT---VKQ-----TPPYDSGRRLLD 91 (221)
T ss_pred eeeeeeeecCCcccchhhhCCC---CCCCCcCccchh--------hhcc-ChhHHHH---Hhh-----cCCccccchhhH
Confidence 5699999999988777665555 664443222111 2211 1111111 000 000000111267
Q ss_pred HHHHhhhhhhhhcCCCCCCceE
Q psy15314 106 FERLVVLDYIIRNTDRGNDNWL 127 (232)
Q Consensus 106 fEkLvILDYiiRNTDRg~DNwL 127 (232)
+=-++|+||+|.|+|||--|-.
T Consensus 92 liDm~IFDFLigN~DRhhye~f 113 (221)
T PF06702_consen 92 LIDMAIFDFLIGNMDRHHYETF 113 (221)
T ss_pred HHHHHHHHHHhcCCcchhhhhh
Confidence 7789999999999999988744
No 7
>KOG3829|consensus
Probab=93.18 E-value=0.078 Score=51.53 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=17.5
Q ss_pred HHHHHHhhhhhhhhcCCCCC
Q psy15314 104 IQFERLVVLDYIIRNTDRGN 123 (232)
Q Consensus 104 ~qfEkLvILDYiiRNTDRg~ 123 (232)
+.+=-+.|+||+|.|.|||-
T Consensus 346 lDliD~aIfDyLiGN~DRHH 365 (486)
T KOG3829|consen 346 LDLIDMAIFDYLIGNMDRHH 365 (486)
T ss_pred HHHHHHHHHHHHhcccchhh
Confidence 56667899999999999995
No 8
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=86.79 E-value=0.83 Score=44.54 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 103 QIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 103 ~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
+.+|+|..|+.++|.|||.|+.||=+-++..
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~~ 357 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSDG 357 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECCC
Confidence 4678899999999999999999998888643
No 9
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=85.48 E-value=1.5 Score=37.72 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..++.|-.++--..|+.|++.=.|||+||+||.
T Consensus 84 ~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~ 116 (202)
T smart00146 84 EARKNFTRSCAGYSVITYILGLGDRHNDNIMLD 116 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence 466778888888999999999999999999998
No 10
>KOG0905|consensus
Probab=78.33 E-value=0.42 Score=51.89 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=59.6
Q ss_pred ccceeeccccchhhHHHHhhhcCCCCChhhhhhhhh-hhccccccccccccCCCCccccccccccCCCC-ChhhhHHHHH
Q psy15314 27 VGSFQMFVDGYKDAEFWLRRFELEPLPAGLALSFQL-QFERLVVGSFQMFVDGYKDAEFWLRRFDLEPL-PAGLALSFQI 104 (232)
Q Consensus 27 ~GSfQvfv~GykdA~~~Lr~~~~e~~P~~~~~~f~~-~f~R~KvGSfQ~fvngy~daD~wl~rfe~~~l-~~~~~~~F~~ 104 (232)
-=-|+++-+||++--+ |=.|+. ..+++ |.|-..+||| .++.=-.||.++...+. =+...+-|-.
T Consensus 1121 MViFrc~stG~~rgMv-------ElVp~a--~TLrKIQve~GltGsf-----kD~pla~WL~KhNp~e~eYekA~eNFiy 1186 (1639)
T KOG0905|consen 1121 MVIFRCLSTGYDRGMV-------ELVPNA--ETLRKIQVEEGLTGSF-----KDRPLAKWLMKHNPSEFEYEKAVENFIY 1186 (1639)
T ss_pred EEEEEeecccccccce-------eecccH--HHHHHHHHHhcccccc-----ccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3457888888886422 444432 00111 4555688998 33433578888764222 1455566666
Q ss_pred HHHHHhhhhhhhhcCCCCCCceEEEec
Q psy15314 105 QFERLVVLDYIIRNTDRGNDNWLIKYT 131 (232)
Q Consensus 105 qfEkLvILDYiiRNTDRg~DNwLIk~~ 131 (232)
-+---+|.-|++.=+||||||+|.+..
T Consensus 1187 SCAG~cVaTYVLGIcDRHNDNIMl~~s 1213 (1639)
T KOG0905|consen 1187 SCAGWCVATYVLGICDRHNDNIMLTKS 1213 (1639)
T ss_pred hcccceeeeEeeecccccCCceEEecc
Confidence 666778999999999999999999875
No 11
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=77.22 E-value=2.5 Score=40.43 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 96 AGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 96 ~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
+..+.-|-.-+---.|+=|++.=-||||||+||.
T Consensus 190 ~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~ 223 (362)
T cd05173 190 ERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR 223 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC
Confidence 3455667777777889999999999999999995
No 12
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=77.20 E-value=4.2 Score=36.20 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
..++.|-.++--..|+-|++.=-|||+||+|+..+..
T Consensus 122 ~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG 158 (237)
T cd00892 122 KARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTG 158 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCC
Confidence 3457777888889999999999999999999987643
No 13
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=75.49 E-value=3.9 Score=36.98 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
.++.|-.++=-..|+-||+.=-|||+||+||.....
T Consensus 165 ~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG 200 (280)
T cd05169 165 RRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTG 200 (280)
T ss_pred HHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCC
Confidence 456777777889999999999999999999988643
No 14
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=72.35 E-value=5 Score=37.12 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
+.+..|-.-+--..|+=|++.=-||||||+||.
T Consensus 122 ~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid 154 (289)
T cd00893 122 QARYNFIESMAGYSLLCYLLQIKDRHNGNILLD 154 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCceEEC
Confidence 455667777777889999999999999999996
No 15
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=71.71 E-value=6.8 Score=34.17 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecC
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQ 132 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~ 132 (232)
+.++.|-..+--..++-|++.=-|||+||+||..+.
T Consensus 111 ~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~ 146 (219)
T cd00142 111 EARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDT 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCC
Confidence 456777778888999999999999999999998754
No 16
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=71.34 E-value=3.7 Score=39.38 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..+.-|-.-+---.|.=|++.=-||||||+||.
T Consensus 194 ~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~ 226 (366)
T cd05175 194 AAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK 226 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCccceeEc
Confidence 445566666777889999999999999999997
No 17
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=71.05 E-value=4.4 Score=38.75 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..+..|-.-+=-..|.=|++.=-||||||+||.
T Consensus 191 ~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~ 223 (361)
T cd05174 191 QAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR 223 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcCccceeEc
Confidence 345567677777889999999999999999995
No 18
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=69.77 E-value=8.1 Score=34.01 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
..++.|-.++--..++-|++.=.|||+||+||.....
T Consensus 114 ~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG 150 (222)
T cd05164 114 AARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETG 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCC
Confidence 4567778888889999999999999999999988643
No 19
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=68.82 E-value=8.9 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
+.+..|-.-+--..|+=||+.=-||||||+||.
T Consensus 186 ~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~ 218 (352)
T cd00891 186 KAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT 218 (352)
T ss_pred HHHHHHhhhHHHHHHHHHHccccccCCCceEEC
Confidence 445666667777889999999999999999996
No 20
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=68.48 E-value=7 Score=37.08 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 96 AGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 96 ~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
++.++.|-.-+--..|+=||+.=-|||+||+||.
T Consensus 184 ~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~ 217 (350)
T cd00896 184 PEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT 217 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc
Confidence 5667778888888999999999999999999996
No 21
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=68.16 E-value=7.4 Score=36.07 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEe
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKY 130 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~ 130 (232)
+.++.|-.-+--..|+=|++.=-|||+||+||..
T Consensus 124 ~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~ 157 (293)
T cd05168 124 EAQKNFIESLAGYSLICYLLQIKDRHNGNILIDN 157 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCceEEcC
Confidence 3455566666678899999999999999999974
No 22
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=67.72 E-value=9.4 Score=34.71 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
.++.|-.++==..++-|||.=-|||++|+||.....
T Consensus 165 ~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG 200 (279)
T cd05171 165 RRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTA 200 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcC
Confidence 456677777789999999999999999999987643
No 23
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=64.97 E-value=9.6 Score=36.41 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..+.-|-.-+---.|+=|++.=-||||||+||.
T Consensus 185 ~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~ 217 (353)
T cd05176 185 KASENFIYSCAGCCVATYVLGICDRHNDNIMLR 217 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCcCCcceEEc
Confidence 455666677777889999999999999999995
No 24
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=64.15 E-value=9.2 Score=36.69 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..+..|-.-+=--.|.=|++.=-||||||+||.
T Consensus 195 ~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~ 227 (365)
T cd00894 195 AAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT 227 (365)
T ss_pred HHHHHHHHHhHHHHHHHHhccccCccccceeEc
Confidence 344555556666789999999999999999997
No 25
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=62.84 E-value=11 Score=33.49 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
..++.|-.++--..++-|++.=-|||+||+||.....
T Consensus 119 ~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG 155 (235)
T cd05172 119 SLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETG 155 (235)
T ss_pred HHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCC
Confidence 3567777888889999999999999999999986543
No 26
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=62.06 E-value=11 Score=36.26 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
.+..|-.-+=-..|+=|++.=-||||||+||.
T Consensus 196 a~~nF~~S~AgysvvtYiLGigDRH~~NILi~ 227 (366)
T cd05165 196 AIEEFTLSCAGYCVATFVLGIGDRHNDNIMVK 227 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcceEEc
Confidence 44556666777889999999999999999997
No 27
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=60.89 E-value=12 Score=35.63 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
.+..|-.-+---.|+=||+.=-||||||.||.
T Consensus 187 a~~nF~~S~AgysvvtYiLGigDRHn~NILi~ 218 (354)
T cd05177 187 AVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT 218 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCCceeEc
Confidence 34556666666889999999999999999995
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=59.68 E-value=10 Score=36.19 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 96 AGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 96 ~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
++.+.-|-.-+---.|+=|++.=-||||||+||.
T Consensus 185 ~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~ 218 (354)
T cd00895 185 EKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK 218 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCCceeEc
Confidence 3455667777777889999999999999999996
No 29
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=59.16 E-value=13 Score=34.85 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEe
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKY 130 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~ 130 (232)
..+..|-.-+---.|.=|++.=-||||||+||.-
T Consensus 143 ~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~ 176 (311)
T cd05167 143 KARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD 176 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccceEEcC
Confidence 4566677777778899999999999999999984
No 30
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=58.61 E-value=15 Score=35.03 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
+.+..|-.-+--..|+=||+.=-||||||+||.
T Consensus 185 ~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~ 217 (353)
T cd05166 185 KAVENFIYSCAGCCVATYVLGICDRHNDNIMLT 217 (353)
T ss_pred HHHHHHHhHHHHHHHHHHHhhccccCCCceEEC
Confidence 445566666677889999999999999999996
No 31
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=54.77 E-value=21 Score=33.03 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
..+.|-.++-=..|+-|++.=-|||++|+||.....
T Consensus 193 ~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG 228 (307)
T cd05170 193 VTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTG 228 (307)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCC
Confidence 446677788889999999999999999999987643
No 32
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=51.89 E-value=5.6 Score=36.14 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhhhhcCCC----------CCCceEEEecC
Q psy15314 104 IQFERLVVLDYIIRNTDR----------GNDNWLIKYTQ 132 (232)
Q Consensus 104 ~qfEkLvILDYiiRNTDR----------g~DNwLIk~~~ 132 (232)
.++-|+.+||.+|+|-|| +.+|.|++-.+
T Consensus 122 ~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~ 160 (238)
T cd05124 122 IQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIP 160 (238)
T ss_pred HHhhhhheeeeeecCCCCCCccccccCCCcceEEEEccc
Confidence 789999999999999999 34677776653
No 33
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=51.08 E-value=36 Score=30.66 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCCC
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPD 134 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~~ 134 (232)
.+++|-.++-=+.++-||+.=.|||.+|.||......
T Consensus 138 ~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~ 174 (253)
T cd05163 138 FRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGN 174 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCc
Confidence 3456666777789999999999999999999886543
No 34
>PHA00691 hypothetical protein
Probab=46.38 E-value=9.2 Score=27.94 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.5
Q ss_pred Ccccceeeccccch
Q psy15314 25 PAVGSFQMFVDGYK 38 (232)
Q Consensus 25 pK~GSfQvfv~Gyk 38 (232)
.|.||+|||++|..
T Consensus 19 ~K~~~Y~V~vSG~T 32 (68)
T PHA00691 19 KKSDSYTVFVSGVT 32 (68)
T ss_pred EeCCcEEEEEeccc
Confidence 48999999999976
No 35
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=44.65 E-value=30 Score=37.02 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCCCCceEEEec
Q psy15314 99 ALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYT 131 (232)
Q Consensus 99 ~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~ 131 (232)
+.-|-.-+---.|+-||+.=-||||||.||.-+
T Consensus 1130 ~~NFi~S~AGYsViTYILgIgDRHngNILId~d 1162 (1374)
T PTZ00303 1130 CINFLASAKLFLLLNYIFSIGDRHKGNVLIGTN 1162 (1374)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCceeEcCC
Confidence 345666677778999999999999999999765
No 36
>KOG0904|consensus
Probab=34.77 E-value=21 Score=38.29 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCceEEEec
Q psy15314 100 LSFQIQFERLVVLDYIIRNTDRGNDNWLIKYT 131 (232)
Q Consensus 100 ~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~ 131 (232)
..|-.-+---+|--|+|.=-|||+||+|||-+
T Consensus 909 e~Ft~SCAGYcVATyVLGIgDRHsDNIMvke~ 940 (1076)
T KOG0904|consen 909 EEFTLSCAGYCVATYVLGIGDRHSDNIMVKET 940 (1076)
T ss_pred HHHHHhhccceeeeeeecccccccCceEEecc
Confidence 34444444456789999999999999999976
No 37
>KOG0903|consensus
Probab=34.48 E-value=47 Score=35.14 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCCCcCCCCCCCcccccccccCCCCcccCcCceEEeeecCCccCCC
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSGIERENEMQDATDWNVVDKADIRLAAIDNGLAFPF 176 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~p~i~iaAIDNGLafP~ 176 (232)
..|.-|-.-+---.+.=|++.=.||||+|+||--+ =||.=||=|.-+ -
T Consensus 678 ~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~E-------------------------------GHIIHIDFGFmL-s 725 (847)
T KOG0903|consen 678 SAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEE-------------------------------GHIIHIDFGFML-S 725 (847)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCceEecCC-------------------------------CCEEEEeeeeEe-c
Confidence 45666666666777899999999999999999432 348889988766 3
Q ss_pred CCCC
Q psy15314 177 KHPD 180 (232)
Q Consensus 177 kHpd 180 (232)
.||-
T Consensus 726 nsPg 729 (847)
T KOG0903|consen 726 NSPG 729 (847)
T ss_pred CCCC
Confidence 5665
No 38
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=34.45 E-value=27 Score=32.41 Aligned_cols=20 Identities=35% Similarity=0.482 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhhhhcCCCCC
Q psy15314 104 IQFERLVVLDYIIRNTDRGN 123 (232)
Q Consensus 104 ~qfEkLvILDYiiRNTDRg~ 123 (232)
.++-||.+||.+|+|-||=.
T Consensus 155 ~~LG~ii~fDi~inN~DRlP 174 (275)
T PF09192_consen 155 EQLGRIIAFDIFINNFDRLP 174 (275)
T ss_dssp HHHHHHHHHHHHHT--SSS-
T ss_pred HHHHhHHhhhhhhcCcccCc
Confidence 78999999999999999976
No 39
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=30.08 E-value=40 Score=19.61 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhhhhcC
Q psy15314 104 IQFERLVVLDYIIRNT 119 (232)
Q Consensus 104 ~qfEkLvILDYiiRNT 119 (232)
.++.++ |++|++++-
T Consensus 4 ~~l~~l-I~~yL~~~g 18 (34)
T smart00667 4 SELNRL-ILEYLLRNG 18 (34)
T ss_pred HHHHHH-HHHHHHHcC
Confidence 567775 889998874
No 40
>KOG0902|consensus
Probab=22.12 E-value=1.1e+02 Score=34.92 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
...-|-.-.---.|+-|++.=.||||||+||-
T Consensus 1636 Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D 1667 (1803)
T KOG0902|consen 1636 ARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID 1667 (1803)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCCceeEc
Confidence 34445555666789999999999999999984
No 41
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=20.95 E-value=42 Score=25.37 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 99 ALSFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 99 ~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
+.+||.|+++|-+-||.--| ++.+|..
T Consensus 1 Mn~FqqELq~L~lndy~~gn--------vvyWDqq 27 (79)
T TIGR03601 1 MNQFQQELQSLSLNDYQTGN--------VVYWDQQ 27 (79)
T ss_pred CcHHHHHHHhcccccccCCc--------EEEeccc
Confidence 46899999999999997655 5666644
No 42
>PF14692 DUF4462: Domain of unknown function (DUF4462)
Probab=20.88 E-value=44 Score=20.89 Aligned_cols=10 Identities=50% Similarity=1.624 Sum_probs=8.7
Q ss_pred cccccccCCC
Q psy15314 187 YHWAWLPQAK 196 (232)
Q Consensus 187 f~W~~lP~a~ 196 (232)
|.|.|||-|+
T Consensus 6 ~~WN~LpRag 15 (28)
T PF14692_consen 6 FNWNWLPRAG 15 (28)
T ss_pred cccccCcccc
Confidence 7899999884
No 43
>KOG2555|consensus
Probab=20.27 E-value=92 Score=31.19 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=49.3
Q ss_pred ccCCCcccceeeccccchhhHHHHhhhcCCCCChhhhhhhhhhhccc-cccccccccCCCCccccccccccC------CC
Q psy15314 21 LVQMPAVGSFQMFVDGYKDAEFWLRRFELEPLPAGLALSFQLQFERL-VVGSFQMFVDGYKDAEFWLRRFDL------EP 93 (232)
Q Consensus 21 ~glppK~GSfQvfv~GykdA~~~Lr~~~~e~~P~~~~~~f~~~f~R~-KvGSfQ~fvngy~daD~wl~rfe~------~~ 93 (232)
.||+-.+-+-+ +-|=|--+-|||+| |.+..-.|.+-..|. |.+..++||.|-...|.-+.+|+. +|
T Consensus 442 aGQqsRihctR--lAgdkadnwwlr~h-----p~vl~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe~~p~~ 514 (588)
T KOG2555|consen 442 AGQQSRIHCTR--LAGDKADNWWLRQH-----PKVLGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFEEVPEP 514 (588)
T ss_pred CCCccceeeee--cccccccchhhhcC-----chhhhhhhhhcccchhhccchhhhcccccccCcchhhhhhhhhhcccc
Confidence 34554444433 34445556699999 777555555555555 888889999998877655555442 35
Q ss_pred CChhhhHHHHHHHH
Q psy15314 94 LPAGLALSFQIQFE 107 (232)
Q Consensus 94 l~~~~~~~F~~qfE 107 (232)
++++.+.++.+++.
T Consensus 515 ~t~~e~~ewl~~l~ 528 (588)
T KOG2555|consen 515 LTKEERKEWLEKLK 528 (588)
T ss_pred cChHHHHHHHHHhc
Confidence 56666665555443
Done!