Query psy15314
Match_columns 232
No_of_seqs 192 out of 375
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:52:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3akj_A CTKA; protein kinase, t 97.0 0.00058 2E-08 61.9 5.3 54 101-180 136-190 (325)
2 1cja_A Protein (actin-fragmin 95.6 0.011 3.6E-07 54.6 4.8 26 101-126 184-209 (342)
3 2x6h_A GH13170P, VPS34, phosph 68.9 6.3 0.00022 39.3 5.7 34 96-129 528-561 (696)
4 3ls8_A Phosphatidylinositol 3- 66.3 8.2 0.00028 38.0 5.9 34 96-129 454-487 (614)
5 3tpd_A Serine/threonine-protei 63.8 5.6 0.00019 36.7 4.0 33 101-133 290-322 (440)
6 3hhm_A Phosphatidylinositol-4, 62.8 9.9 0.00034 39.9 5.9 33 97-129 915-947 (1091)
7 2wxf_A Phosphatidylinositol-4, 54.2 15 0.00052 37.8 5.5 31 99-129 768-798 (940)
8 2y3a_A Phosphatidylinositol-4, 52.9 17 0.00059 38.1 5.7 30 100-129 921-950 (1092)
9 1e7u_A Phosphatidylinositol 3- 52.6 15 0.00053 37.9 5.3 32 98-129 783-814 (961)
10 1inz_A EPS15-interacting porte 40.0 17 0.00058 29.3 2.7 33 23-55 7-40 (148)
11 1xgw_A Epsin 4; ENTH, enthopro 32.1 18 0.00061 30.1 1.6 83 25-120 20-105 (176)
12 1pft_A TFIIB, PFTFIIBN; N-term 23.5 40 0.0014 21.6 1.9 23 164-186 24-49 (50)
No 1
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=97.04 E-value=0.00058 Score=61.86 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCCCceEEEecCCCcCCCCCCCcccccccccCCCCcccCcCceEEee-ecCCccCCCCCC
Q psy15314 101 SFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSGIERENEMQDATDWNVVDKADIRLAA-IDNGLAFPFKHP 179 (232)
Q Consensus 101 ~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~p~i~iaA-IDNGLafP~kHp 179 (232)
....+|-+++|+||+|.|||||..||=+=++..+. .+++|+ +|+|.|+-..|.
T Consensus 136 ~~~~~~~~~~vfn~LIgN~D~H~kN~s~l~~~~tg--------------------------~~~LAP~YD~~~s~~~~~~ 189 (325)
T 3akj_A 136 VLKCFFWDMFVADTLLGNFDRHNGNWGFLRASNSK--------------------------EYQIAPIFDCGSCLYPQAD 189 (325)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCCGGGCEEEEESSSS--------------------------CEEECCBCCCTTSSCTTCC
T ss_pred HHHHHHHHHHHhhHhhcCCCCCCcCeEEEEECCCC--------------------------CEEecCcccccccccccCC
Confidence 45688999999999999999999999777764321 266775 699988766564
Q ss_pred C
Q psy15314 180 D 180 (232)
Q Consensus 180 d 180 (232)
+
T Consensus 190 ~ 190 (325)
T 3akj_A 190 D 190 (325)
T ss_dssp H
T ss_pred h
Confidence 3
No 2
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=95.60 E-value=0.011 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCCCce
Q psy15314 101 SFQIQFERLVVLDYIIRNTDRGNDNW 126 (232)
Q Consensus 101 ~F~~qfEkLvILDYiiRNTDRg~DNw 126 (232)
+=+.++=||+++|+.|+|-||..-.|
T Consensus 184 ~~~k~LG~Ii~FDi~InN~DR~Pl~W 209 (342)
T 1cja_A 184 STMQQLGSLMALDVIVNNSDRLPIAW 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSCSSS
T ss_pred HHHHhhchhheehhhhcCCccCcccc
Confidence 33466778999999999999996544
No 3
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=68.88 E-value=6.3 Score=39.29 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 96 AGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 96 ~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
.+.++.|-..+--..|+-||+.=.|||+||+||.
T Consensus 528 ~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid 561 (696)
T 2x6h_A 528 AEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT 561 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe
Confidence 3567788888888999999999999999999997
No 4
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=66.33 E-value=8.2 Score=37.98 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 96 AGLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 96 ~~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
.+.+..|-..+--..|.=||+.=-|||+||+||.
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGigDRH~~NILld 487 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLT 487 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCTTSEEEC
T ss_pred HHHHHHHHHHHHHHhHhheeeeccCCCCcceeEc
Confidence 4567888888888999999999999999999995
No 5
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=63.79 E-value=5.6 Score=36.66 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCCCceEEEecCC
Q psy15314 101 SFQIQFERLVVLDYIIRNTDRGNDNWLIKYTQP 133 (232)
Q Consensus 101 ~F~~qfEkLvILDYiiRNTDRg~DNwLIk~~~~ 133 (232)
.-..+|=|.+|+.++|.|||.|.-||=+-+...
T Consensus 290 ~d~~~~~rr~vfn~ligN~D~H~KN~s~l~~~~ 322 (440)
T 3tpd_A 290 KDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAG 322 (440)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCGGGCEEEECGG
T ss_pred HHHHHHHHHHHhhHhhcCCcCCccceEEEEcCC
Confidence 345677788899999999999999999888654
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=62.81 E-value=9.9 Score=39.87 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 97 GLALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 97 ~~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..+..|-..+--..|.=||+.=-|||+||+||.
T Consensus 915 ~ar~nF~~S~A~ysvv~YiLgigDRH~~NILid 947 (1091)
T 3hhm_A 915 AAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK 947 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEE
T ss_pred HHHHHHHHHhhhhhheEEEEeecCCCCcceEEe
Confidence 345677788888999999999999999999997
No 7
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=54.21 E-value=15 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 99 ALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 99 ~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
+..|-..+--..|+-||+.=.|||+||+||.
T Consensus 768 ~~~F~~S~A~~Svv~YILGlgDRH~~NILid 798 (940)
T 2wxf_A 768 IEEFTLSCAGYCVATYVLGIGDRHSDNIMIR 798 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccEEEe
Confidence 3457777777899999999999999999998
No 8
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=52.89 E-value=17 Score=38.07 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 100 LSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 100 ~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
..|-..+--..|+-||+.=.|||+||+||.
T Consensus 921 ~nF~~SlA~ySvv~YILGlGDRH~~NILid 950 (1092)
T 2y3a_A 921 EEFTLSCAGYCVASYVLGIGDRHSDNIMVK 950 (1092)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCTTTEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEe
Confidence 456677777899999999999999999997
No 9
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=52.58 E-value=15 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCCCCceEEE
Q psy15314 98 LALSFQIQFERLVVLDYIIRNTDRGNDNWLIK 129 (232)
Q Consensus 98 ~~~~F~~qfEkLvILDYiiRNTDRg~DNwLIk 129 (232)
.++.|-..+--..|+-||+.=.|||+||+||.
T Consensus 783 ar~~F~~S~A~ySvv~YILGigDRH~~NILid 814 (961)
T 1e7u_A 783 AVERFVYSCAGYCVATFVLGIGDRHNDNIMIS 814 (961)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCCcceEEe
Confidence 44556666667889999999999999999997
No 10
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=40.00 E-value=17 Score=29.28 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCCcccceeeccccchhhHHHHhhhcC-CCCChh
Q psy15314 23 QMPAVGSFQMFVDGYKDAEFWLRRFEL-EPLPAG 55 (232)
Q Consensus 23 lppK~GSfQvfv~GykdA~~~Lr~~~~-e~~P~~ 55 (232)
...-..+.|-.+.||..+..-+|+..+ |+|++.
T Consensus 7 ~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~ 40 (148)
T 1inz_A 7 TSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPS 40 (148)
T ss_dssp CCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcC
Confidence 345668889999999999999999875 888876
No 11
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=32.15 E-value=18 Score=30.10 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=41.8
Q ss_pred CcccceeeccccchhhHHHHhhhcC-CCCChhhhhhhhhhhccccccccccccCCCCcc-c-cccccccCCCCChhhhHH
Q psy15314 25 PAVGSFQMFVDGYKDAEFWLRRFEL-EPLPAGLALSFQLQFERLVVGSFQMFVDGYKDA-E-FWLRRFDLEPLPAGLALS 101 (232)
Q Consensus 25 pK~GSfQvfv~GykdA~~~Lr~~~~-e~~P~~~~~~f~~~f~R~KvGSfQ~fvngy~da-D-~wl~rfe~~~l~~~~~~~ 101 (232)
..+.+.|-.+.||.++..-+|+..+ |+|.+. +....-+--.+|+. ..|..- + -| .|+-. .-.+.
T Consensus 20 ~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs-----~~~m~eIa~~T~~~--~~~~~Im~~L~-kRl~~-----~~~k~ 86 (176)
T 1xgw_A 20 ELVDKATNVVMNYSEIESKVREATNDDPWGPS-----GQLMGEIAKATFMY--EQFPELMNMLW-SRMLK-----DNKKN 86 (176)
T ss_dssp --------CCCCCCHHHHHHHHHTCSCSSCCC-----HHHHHHHHHHTTCT--TTHHHHHHHHH-HHHHS-----SCTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCC-----HHHHHHHHHHhcCh--hhHHHHHHHHH-HHHhc-----cCCch
Confidence 3567788999999999999999875 888876 44333332222210 010000 0 00 11000 00123
Q ss_pred HHHHHHHHhhhhhhhhcCC
Q psy15314 102 FQIQFERLVVLDYIIRNTD 120 (232)
Q Consensus 102 F~~qfEkLvILDYiiRNTD 120 (232)
.|.=+.-|+||||+|+|=.
T Consensus 87 WR~vyKaL~LLeYLl~nGs 105 (176)
T 1xgw_A 87 WRRVYKSLLLLAYLIRNGS 105 (176)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHhCC
Confidence 3456667999999999954
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.45 E-value=40 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=17.5
Q ss_pred EEeeecCCccCCCCCCC---CCCCCc
Q psy15314 164 RLAAIDNGLAFPFKHPD---SWRAYP 186 (232)
Q Consensus 164 ~iaAIDNGLafP~kHpd---~wr~yp 186 (232)
.+.--+=||+||...-| +||+|.
T Consensus 24 elvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 24 EIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp EEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred eEECcccCCcccccccccCCcccccC
Confidence 46777889999977655 699873
Done!