RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15314
(232 letters)
>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase.
Some members of this family probably do not have lipid
kinase activity and are protein kinases, .
Length = 233
Score = 75.5 bits (186), Expect = 2e-16
Identities = 38/154 (24%), Positives = 45/154 (29%), Gaps = 49/154 (31%)
Query: 69 VGSFQMFVDGYKDAEFWLRRFDLEPLPAGLALSFQIQFERLVVLDYIIRNTDRGNDNWLI 128
VG Q FV + DAE W F + VLDYI+ N DR DN L
Sbjct: 97 VGLLQWFVKHFPDAEEWGEARKN----------FVRSCAGMSVLDYILGNGDRHLDNIL- 145
Query: 129 KYTQPDIQSNAPSGIERENEMQDATDWNVVDKADIRLAAIDNGLAFP-FKHPDSWRAYPY 187
VDK +L ID GL FP K P+
Sbjct: 146 -----------------------------VDKTTGKLFHIDFGLCFPKAKRGPKPERVPF 176
Query: 188 HWAWLPQAKVPFSIETRDLVQPLLADMNFVQDLC 221
PF D ++LC
Sbjct: 177 RLTR------PFVEAMGGY--DPSGDEGLFRELC 202
>gnl|CDD|234372 TIGR03843, TIGR03843, conserved hypothetical protein. This model
represents a protein family largely restricted to the
Actinobacteria (high-GC Gram-positives), although it is
also found in the Chloroflexi. Distant similarity to the
phosphatidylinositol 3- and 4-kinase is suggested by the
matching of some members to pfam00454.
Length = 253
Score = 30.7 bits (70), Expect = 0.50
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 15/68 (22%)
Query: 69 VGSFQMFVDGYKDAEF---------------WLRRFDLEPLPAGLALSFQIQFERLVVLD 113
G Q+++D D + LR D E P L + Q R+ V D
Sbjct: 83 PGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHADHPQLRRMAVFD 142
Query: 114 YIIRNTDR 121
++ N DR
Sbjct: 143 ALVNNADR 150
>gnl|CDD|218736 pfam05763, DUF835, Protein of unknown function (DUF835). The
members of this archaebacterial protein family are
around 250-300 amino acid residues in length. The
function of these proteins is not known.
Length = 136
Score = 28.7 bits (65), Expect = 1.2
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 170 NGLAFPFKHPDSWRAYPYHWAWLPQAKVPFSIETRDL 206
LA ++P+ WR W+ + K +I +L
Sbjct: 24 PVLAITRENPEKWRELYIPVIWITKVKGENAISPTNL 60
>gnl|CDD|215057 PLN00105, PLN00105, malate/L-lactate dehydrogenase; Provisional.
Length = 330
Score = 29.4 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 110 VVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSG----IERENEMQDATDWN 156
V+LD ++ RGN+ LIK T I + P+ IE E + A D N
Sbjct: 21 VLLDVMMYAQLRGNNQGLIKVTTKGILAPDPNATPITIEHETKTSAAVDGN 71
>gnl|CDD|220311 pfam09609, Cas_GSU0054, CRISPR-associated protein, GSU0054 family
(Cas_GSU0054). This entry represents a rare
CRISPR-associated protein. So far, members are found in
Geobacter sulfurreducens and in two unpublished genomes:
Gemmata obscuriglobus and Actinomyces naeslundii.
CRISPR-associated proteins typically are found near
CRISPR repeats and other CRISPR-associated proteins,
have low levels of sequence identify, have sequence
relationships that suggest lateral transfer, and show
some sequence similarity to DNA-active proteins such as
helicases and repair proteins.
Length = 519
Score = 28.8 bits (64), Expect = 2.5
Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 27 VGSFQMFVDGYKDAEFWLRRF-----ELEPLPAGLALSFQLQFERLVVGSFQMFVDGYKD 81
SFQ F G + W R E P P + F+ LV ++ + KD
Sbjct: 3 GLSFQ-FRAGRYHSAPWGRHVDEASPEWPPSPWRI-------FQALVATWAKVDAED-KD 53
Query: 82 AEFWLRRFDLEPLPAGLALSFQIQFERLVVLDYIIRNTDRGNDNW 126
WL P P AL Y+ R RG NW
Sbjct: 54 VLNWLES---LPEPPVFALP-PALVAPNATRHYVPRAWGRGKKNW 94
>gnl|CDD|225726 COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related
hemolysins [Amino acid transport and metabolism /
General function prediction only].
Length = 363
Score = 28.5 bits (64), Expect = 3.0
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 70 GSFQMFVDGYKDAEFWLRRFDLEPLPAGLALSFQIQFERLVVLDYIIRNTDRGN-DNWLI 128
GS FVD Y + F+ L +D++ N G D W++
Sbjct: 132 GSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVG------LTAIDHLTHNVKAGQMDTWVL 185
Query: 129 KYTQ 132
Y
Sbjct: 186 FYES 189
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 22 VQMPAV----GSFQMFVDGYKDAEFWLRRFELEP 51
V +PA+ GS FVD Y + FE
Sbjct: 122 VDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNG 155
>gnl|CDD|163518 TIGR03806, chp_HNE_0200, conserved hypothetical protein, HNE_0200
family. The model TIGR03805 describes an
uncharacterized protein family that contains repeats
associated with the formation of a right-handed helical
stack of parallel beta strands, homologous to those
found in a number of carbohydrate-binding proteins and
sugar hydrolases. This model describes another
uncharacterized protein family, found in the same
species as TIGR03805 member proteins, usually as the
adjacent gene or in a fusion protein. An example is
HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes
two members of this family are with a single member of
TIGR03805. The function is unknown [Hypothetical
proteins, Conserved].
Length = 317
Score = 28.1 bits (63), Expect = 3.7
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 177 KHPDSWRAYPYHW 189
+ W A PY W
Sbjct: 94 RRAQGWAALPYVW 106
>gnl|CDD|239765 cd04098, eEF2_C_snRNP, eEF2_C_snRNP: This family includes a
C-terminal portion of the spliceosomal human 116kD U5
small nuclear ribonucleoprotein (snRNP) protein (U5-116
kD) and, its yeast counterpart Snu114p. This domain is
homologous to the C-terminal domain of the eukaryotic
translational elongation factor EF-2. Yeast Snu114p is
essential for cell viability and for splicing in vivo.
U5-116 kD binds GTP. Experiments suggest that GTP
binding and probably GTP hydrolysis is important for the
function of the U5-116 kD/Snu114p. In complex with
GTP, EF-2 promotes the translocation step of
translation. During translocation the peptidyl-tRNA is
moved from the A site to the P site, the uncharged tRNA
from the P site to the E-site and, the mRNA is shifted
one codon relative to the ribosome.
Length = 80
Score = 26.4 bits (59), Expect = 4.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 162 DIRLAAIDNGLAFPFKHPDSWRAYP 186
D+R+ G AF D W+ P
Sbjct: 58 DLRVHT--QGQAFCQSVFDHWQIVP 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.446
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,439,992
Number of extensions: 1208153
Number of successful extensions: 1191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1188
Number of HSP's successfully gapped: 23
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.7 bits)