RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15314
         (232 letters)



>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
          Length = 334

 Score = 30.1 bits (67), Expect = 0.22
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 174 FPFKHPDSWRAYPYHWA--WLPQAKVPFSIETRDLVQPL 210
           FP K+ + W+AY    A  W  + ++  S +  D    +
Sbjct: 64  FPIKYHEIWQAYKRAEASFWTAE-EIDLSKDIHDWNNRM 101


>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
           trachomatis [TaxId: 813]}
          Length = 317

 Score = 28.2 bits (62), Expect = 0.76
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 174 FPFKHPDSWRAYPYHWA--WLPQAKVPFS 200
            P K+  +W  Y    A  WLP  ++P  
Sbjct: 31  VPIKYKWAWEHYLNGCANNWLPT-EIPMG 58


>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
          Length = 285

 Score = 27.8 bits (61), Expect = 0.96
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 174 FPFKHPDSWRAYPYHWA--WLPQAKVPFS 200
           FP K+ + W AY    A  W  + ++  +
Sbjct: 28  FPIKYHEIWAAYKKVEASFWTAE-EIELA 55


>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 281

 Score = 27.9 bits (61), Expect = 1.0
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 174 FPFKHPDSWRAYPYHWA--WLPQAKVPFS 200
           FP ++ D W+ Y    A  W  + +V  S
Sbjct: 17  FPIEYHDIWQMYKKAEASFWTAE-EVDLS 44


>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 25.3 bits (55), Expect = 7.3
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 166 AAIDNGLAFPFKHPDSWRAYPYHWAWLPQ 194
               N +AF +  P+    Y     W  +
Sbjct: 254 YLYANKMAFRYPEPEDKAKYVKERTWRSE 282


>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 157

 Score = 24.6 bits (54), Expect = 8.1
 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 191 WLPQAKVPFSIETRDLVQPLLADMNFVQ 218
           WL + K+  S E  DLV+    D     
Sbjct: 121 WLKEDKLECSEELGDLVKS--VDPTLAL 146


>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799
          {Shewanella oneidensis [TaxId: 70863]}
          Length = 158

 Score = 24.5 bits (53), Expect = 9.5
 Identities = 4/18 (22%), Positives = 11/18 (61%)

Query: 80 KDAEFWLRRFDLEPLPAG 97
          ++A+ +++  +LE    G
Sbjct: 2  QNADDFIKFLELEQHVEG 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 925,520
Number of extensions: 44374
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 13
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.7 bits)