BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15316
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SSY|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
G28aI29AG30AC54TC97A
pdb|1SSY|B Chain B, Crystal Structure Of Phage T4 Lysozyme Mutant
G28aI29AG30AC54TC97A
Length = 164
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 61 VDQKLGLNIVPKTKGYLSEAGASLVDQKLGLNIVPKTKEDKGFDRH 106
+D+ L L I T+GY + A A L+ + LN K++ DK R+
Sbjct: 9 IDEGLRLKIYKDTEGYYTIAAAHLLTKSPSLN-AAKSELDKAIGRN 53
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 68 NIVPKTKGYLSEAGASLVDQKLGLNIVPKTKE 99
N PKT GY +E A L++Q L +N PK ++
Sbjct: 184 NKTPKTVGYTNEQLAKLLEQTLPIN-TPKHED 214
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 68 NIVPKTKGYLSEAGASLVDQKLGLNIVPKTKE 99
N PKT GY +E A L++Q L +N PK ++
Sbjct: 184 NKTPKTVGYTNEQLAKLLEQTLPIN-TPKHED 214
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 68 NIVPKTKGYLSEAGASLVDQKLGLNIVPKTKE 99
N PKT GY +E A L++Q L +N PK ++
Sbjct: 184 NKTPKTVGYTNEQLAKLLEQTLPIN-TPKHED 214
>pdb|3DNP|A Chain A, Crystal Structure Of Stress Response Protein Yhax From
Bacillus Subtilis
Length = 290
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 67 LNIVPKTKGYLSEAGASLVDQKLGLN 92
LNIVPK G EAG +LV +LGL+
Sbjct: 194 LNIVPK--GVSKEAGLALVASELGLS 217
>pdb|1IVA|A Chain A, Structure-Activity Relationships For P-Type Calcium
Channel Selective Omega-Agatoxins
pdb|1OAV|A Chain A, Omega-Agatoxin Iva
pdb|1OAW|A Chain A, Omega-Agatoxin Iva
Length = 48
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 38 PCCFGRACLIPNQGYLSEAGASLVDQKLGL 67
PCC GR C+ G E L+ + LGL
Sbjct: 18 PCCRGRGCICSIMGTNCECKPRLIMEGLGL 47
>pdb|102L|A Chain A, How Amino-Acid Insertions Are Allowed In An Alpha-Helix Of
T4 Lysozyme
Length = 165
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 61 VDQKLGLNIVPKTKGYLSEAGASLVDQKLGLNIVPKTKEDKGFDRH 106
+D+ L L I T+GY + L+ + LN K++ DK R+
Sbjct: 9 IDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAAKSELDKAIGRN 54
>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
Length = 279
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 112 MSVMRGQILNLNQALKDGKSPV 133
+S++R Q+ +LN LKD + PV
Sbjct: 121 LSMIRAQLASLNGKLKDAEKPV 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,542,692
Number of Sequences: 62578
Number of extensions: 181961
Number of successful extensions: 411
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 10
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)