Query psy15316
Match_columns 145
No_of_seqs 129 out of 182
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 17:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dl0_A J-atracotoxin-HV1C; neu 50.0 4.9 0.00017 24.8 0.7 14 34-47 11-24 (37)
2 1psw_A ADP-heptose LPS heptosy 49.9 7.3 0.00025 29.9 1.9 40 8-48 282-322 (348)
3 2wlv_A GAG polyprotein, HIV-2 45.9 16 0.00055 28.3 3.2 38 101-138 12-54 (144)
4 2lpu_A Kmatg10; autophagy, E2- 45.9 6.1 0.00021 30.9 0.0 23 72-95 130-152 (152)
5 2xgv_A PSIV capsid N-terminal 37.5 30 0.001 26.7 3.5 37 102-138 13-55 (142)
6 2xde_A GAG polyprotein, HIV-1 30.3 40 0.0014 26.1 3.2 38 101-138 14-56 (145)
7 3t98_B Nucleoporin NUP58/NUP45 26.2 60 0.0021 22.8 3.3 32 106-137 15-51 (93)
8 2xgu_A Relik capsid N-terminal 21.8 57 0.002 25.2 2.7 37 102-138 13-55 (149)
9 3v33_A Ribonuclease ZC3H12A; r 21.2 36 0.0012 27.6 1.5 32 18-49 167-205 (223)
10 4abm_A Charged multivesicular 20.6 93 0.0032 21.1 3.3 22 105-126 54-75 (79)
11 3h47_A Ca, capsid protein P24; 20.3 68 0.0023 26.0 3.0 36 103-138 15-55 (231)
No 1
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=50.02 E-value=4.9 Score=24.81 Aligned_cols=14 Identities=50% Similarity=1.528 Sum_probs=11.9
Q ss_pred hhccCCCCCCceec
Q psy15316 34 KLCCPCCFGRACLI 47 (145)
Q Consensus 34 r~~~~c~fgRsCli 47 (145)
..++|||.|.||--
T Consensus 11 aaccpccpgtsck~ 24 (37)
T 1dl0_A 11 AACCPCCPGTSCKA 24 (37)
T ss_dssp CSSCCCCTTEEEEE
T ss_pred ccccCCCCCccccc
Confidence 46899999999984
No 2
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=49.90 E-value=7.3 Score=29.86 Aligned_cols=40 Identities=8% Similarity=-0.062 Sum_probs=18.3
Q ss_pred cEEEEecCCCCCCCCCCCCchhhhhhh-hccCCCCCCceecC
Q psy15316 8 KKIGVFKPKDEEPYGRLNPKWTKWMHK-LCCPCCFGRACLIP 48 (145)
Q Consensus 8 ~~vgvfKPkdEEPyg~lnPkw~kw~~r-~~~~c~fgRsClip 48 (145)
-.|++|.|.+.+=++|.++.-. -++. .-|.+|+.+.|...
T Consensus 282 P~v~lfg~t~~~~~~P~~~~~~-~i~~~~~c~pc~~~~c~~~ 322 (348)
T 1psw_A 282 PLVALYGPSSPDFTPPLSHKAR-VIRLITGYHKVRKGDAAEG 322 (348)
T ss_dssp CEEEEESSSCTTSSCCCCTTEE-EEESSCC----------CC
T ss_pred CEEEEECCCCccccCCCCCCeE-EEecCCCCCCCCCCCCCCC
Confidence 3699999999887777766421 1111 12333456667643
No 3
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=45.89 E-value=16 Score=28.26 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCCChHHHHHHHhhHhH-----HHHHHHHHHhcCCCcchhhcC
Q psy15316 101 KGFDRHLFEKQMSVMRG-----QILNLNQALKDGKSPVQLVQM 138 (145)
Q Consensus 101 kgfD~~~F~kQmsvmrg-----qi~nl~~al~~~ksp~~lvqm 138 (145)
.-.||..+.-|+.|++- .+...-+||-+|-||+||-+|
T Consensus 12 q~lsPRtLnaWVK~vEEK~fspEvipmFsALSegaTP~Dln~m 54 (144)
T 2wlv_A 12 IPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQM 54 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCTTHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhccCCchhhHHHHHHhcccCcHHHHHH
Confidence 34688888889988887 577899999999999999877
No 4
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=45.91 E-value=6.1 Score=30.86 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred Cccceeccccceeeeeeccccccc
Q psy15316 72 KTKGYLSEAGASLVDQKLGLNIVP 95 (145)
Q Consensus 72 ~T~~ylSE~gAS~vD~kl~ln~Vp 95 (145)
.+..||.-+ +|+|.+-+|+|+||
T Consensus 130 ~~~~YL~rW-~SvYg~~~d~~~~~ 152 (152)
T 2lpu_A 130 DVEHYLTRW-ISLYIRIFDLNFVP 152 (152)
Confidence 356799999 99999999999997
No 5
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=37.46 E-value=30 Score=26.68 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=29.6
Q ss_pred CCChHHHHHHHhhH-hH-----HHHHHHHHHhcCCCcchhhcC
Q psy15316 102 GFDRHLFEKQMSVM-RG-----QILNLNQALKDGKSPVQLVQM 138 (145)
Q Consensus 102 gfD~~~F~kQmsvm-rg-----qi~nl~~al~~~ksp~~lvqm 138 (145)
-.||..+.-|+.|. .- .+...-+||-+|-||+||-+|
T Consensus 13 ~lsPRtlnaWVKvv~Eek~fspEvipmF~AlSeg~Tp~Dln~m 55 (142)
T 2xgv_A 13 PMSTRTVAAWIRQTGEKGLTSPETITYWGLISQDLSSREQVQL 55 (142)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHccccCchhhHHHHHHhCCCChHHHHHH
Confidence 35677777777776 33 577899999999999999887
No 6
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=30.27 E-value=40 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCChHHHHHHHhhHhH-----HHHHHHHHHhcCCCcchhhcC
Q psy15316 101 KGFDRHLFEKQMSVMRG-----QILNLNQALKDGKSPVQLVQM 138 (145)
Q Consensus 101 kgfD~~~F~kQmsvmrg-----qi~nl~~al~~~ksp~~lvqm 138 (145)
.-.||..+.-|+.|++- .++..-+||-+|-||+||-+|
T Consensus 14 q~lSPRTLnaWVKvvEEkafspEvipmFsALSeg~TP~Dln~m 56 (145)
T 2xde_A 14 QAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTM 56 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCTTHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHhcCCcchhHHHHHHHcccCcHHHHHH
Confidence 34678888888888776 466788999999999999877
No 7
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.20 E-value=60 Score=22.83 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=24.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHhc-----CCCcchhhc
Q psy15316 106 HLFEKQMSVMRGQILNLNQALKD-----GKSPVQLVQ 137 (145)
Q Consensus 106 ~~F~kQmsvmrgqi~nl~~al~~-----~ksp~~lvq 137 (145)
.-|+++|...|+||-.|-+.|.. .-||.+|+.
T Consensus 15 ~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~ 51 (93)
T 3t98_B 15 QQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSM 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 35899999999999887766543 667877763
No 8
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=21.80 E-value=57 Score=25.23 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=29.3
Q ss_pred CCChHHHHHHHhhH-h-H----HHHHHHHHHhcCCCcchhhcC
Q psy15316 102 GFDRHLFEKQMSVM-R-G----QILNLNQALKDGKSPVQLVQM 138 (145)
Q Consensus 102 gfD~~~F~kQmsvm-r-g----qi~nl~~al~~~ksp~~lvqm 138 (145)
-.||..+.-|+.|. + | .+.+.-+||-+|-||+||-+|
T Consensus 13 plsPRtLnaWVKvvEek~f~spEvipmFsAlSeg~TP~Din~m 55 (149)
T 2xgu_A 13 PVGPGLIAAWLKQVQEHGLTHPATITYFGVISINFTSVDINML 55 (149)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccCChHHHHHHHHHhCCCChHHHHHH
Confidence 35777777777775 1 2 388999999999999999877
No 9
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=21.20 E-value=36 Score=27.55 Aligned_cols=32 Identities=31% Similarity=0.732 Sum_probs=14.2
Q ss_pred CCCCCCCCCchhhhhhhhc-------cCCCCCCceecCC
Q psy15316 18 EEPYGRLNPKWTKWMHKLC-------CPCCFGRACLIPN 49 (145)
Q Consensus 18 EEPyg~lnPkw~kw~~r~~-------~~c~fgRsClipn 49 (145)
+.|+|...|.-..++.+.- -+|.+|+.|...|
T Consensus 167 dDplgR~Gp~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 205 (223)
T 3v33_A 167 DDPLGRHGPSLDNFLRKKPLTLEHRKQPCPYGRKCTYGI 205 (223)
T ss_dssp SSTTCTTSCCHHHHTBSCC--------------------
T ss_pred CCcccCCCCCHHHHhccCCCCcccCCCCCCCCcccccCC
Confidence 4589999998888776642 3588888888644
No 10
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=20.62 E-value=93 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.0
Q ss_pred hHHHHHHHhhHhHHHHHHHHHH
Q psy15316 105 RHLFEKQMSVMRGQILNLNQAL 126 (145)
Q Consensus 105 ~~~F~kQmsvmrgqi~nl~~al 126 (145)
+.+|+.|+.-.-|||.||-+-+
T Consensus 54 KK~~E~qL~q~~~ql~~LE~q~ 75 (79)
T 4abm_A 54 KKRYEKQLAQIDGTLSTIEFQR 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999997654
No 11
>3h47_A Ca, capsid protein P24; hexamer, engineered disulfide bonds, viral protein; 1.90A {Human immunodeficiency virus type 1} PDB: 3h4e_A 2lf4_A 3mge_A 3p05_A 3p0a_A 3dik_A 3nte_A 1e6j_P
Probab=20.34 E-value=68 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=29.0
Q ss_pred CChHHHHHHHhhHh-----HHHHHHHHHHhcCCCcchhhcC
Q psy15316 103 FDRHLFEKQMSVMR-----GQILNLNQALKDGKSPVQLVQM 138 (145)
Q Consensus 103 fD~~~F~kQmsvmr-----gqi~nl~~al~~~ksp~~lvqm 138 (145)
.||....-|+.+.+ -.+++.-+||-+|-||+||-+|
T Consensus 15 lsPrtl~awvk~veek~f~pevip~f~alse~~tp~D~n~m 55 (231)
T 3h47_A 15 ISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTM 55 (231)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTHHHHHHHHTTTCCHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCCcchhHHHHHhhCCCCHHHHHHH
Confidence 56677777777666 4577899999999999999877
Done!