Query psy15316
Match_columns 145
No_of_seqs 129 out of 182
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 17:55:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15316.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15316hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dl0a_ g.3.6.2 (A:) J-atracot 50.7 3 0.00022 24.2 1.3 17 34-50 11-27 (37)
2 d1vs5o1 a.16.1.2 (O:1-88) Ribo 22.7 30 0.0022 22.6 2.8 27 104-130 20-46 (88)
3 d1kuqa_ a.16.1.2 (A:) Ribosoma 20.3 30 0.0022 22.2 2.5 23 108-130 22-44 (84)
4 d1agga_ g.3.6.2 (A:) omega-Aga 20.0 18 0.0013 21.7 1.1 30 37-66 17-46 (48)
5 d1a32a_ a.16.1.2 (A:) Ribosoma 17.5 39 0.0028 21.7 2.5 27 104-130 19-45 (85)
6 d1pswa_ c.87.1.7 (A:) ADP-hept 17.0 28 0.0021 24.4 1.8 20 8-27 282-301 (348)
7 d2pxrc1 a.73.1.1 (C:1-145) HIV 15.1 55 0.004 23.4 3.0 38 101-138 13-55 (145)
8 d1xdpa1 a.7.15.1 (A:2-106) Pol 14.1 50 0.0036 21.4 2.4 31 106-137 47-77 (105)
9 g1f2t.1 c.37.1.12 (A:,B:) Rad5 13.9 21 0.0015 24.1 0.4 20 18-37 232-251 (292)
10 d1dw0a_ a.3.1.1 (A:) SHP, an o 12.9 13 0.00092 26.0 -1.1 20 27-47 80-99 (112)
No 1
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=50.67 E-value=3 Score=24.16 Aligned_cols=17 Identities=41% Similarity=1.280 Sum_probs=13.2
Q ss_pred hhccCCCCCCceecCCC
Q psy15316 34 KLCCPCCFGRACLIPNQ 50 (145)
Q Consensus 34 r~~~~c~fgRsClipn~ 50 (145)
..++|||.|.||-.-..
T Consensus 11 aaccpccpgtsckaesn 27 (37)
T d1dl0a_ 11 AACCPCCPGTSCKAESN 27 (37)
T ss_dssp CSSCCCCTTEEEEECTT
T ss_pred ccccCCCCCCceecccC
Confidence 46899999999985433
No 2
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli [TaxId: 562]}
Probab=22.69 E-value=30 Score=22.56 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.3
Q ss_pred ChHHHHHHHhhHhHHHHHHHHHHhcCC
Q psy15316 104 DRHLFEKQMSVMRGQILNLNQALKDGK 130 (145)
Q Consensus 104 D~~~F~kQmsvmrgqi~nl~~al~~~k 130 (145)
|-.-=+=|++++.-.|.||++-|+..+
T Consensus 20 DtGS~evQiA~lT~rI~~Lt~Hl~~~k 46 (88)
T d1vs5o1 20 DTGSTEVQVALLTAQINHLQGHFAEHK 46 (88)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 444457799999999999999998665
No 3
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=20.33 E-value=30 Score=22.25 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.2
Q ss_pred HHHHHhhHhHHHHHHHHHHhcCC
Q psy15316 108 FEKQMSVMRGQILNLNQALKDGK 130 (145)
Q Consensus 108 F~kQmsvmrgqi~nl~~al~~~k 130 (145)
=+=|+++|.-.|-||+..|+..+
T Consensus 22 ~evQiA~lT~rI~~L~~Hlk~~k 44 (84)
T d1kuqa_ 22 TEVQVALLTLRINRLSEHLKVHK 44 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCc
Confidence 36799999999999999998765
No 4
>d1agga_ g.3.6.2 (A:) omega-Agatoxin IV, IVa, IVb {Funnel web spider (Agelenopsis aperta) [TaxId: 6908]}
Probab=19.96 E-value=18 Score=21.74 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=20.0
Q ss_pred cCCCCCCceecCCCcchhhhhhhhhhhhcC
Q psy15316 37 CPCCFGRACLIPNQGYLSEAGASLVDQKLG 66 (145)
Q Consensus 37 ~~c~fgRsClipn~gYlsEaaAsllD~~l~ 66 (145)
-|||-||.|+-.--|--+|.--.|+=+.|+
T Consensus 17 t~ccrgr~c~cs~~gtncec~prlimegl~ 46 (48)
T d1agga_ 17 TKCCRGRPCRCSMIGTNCECTPRLIMEGLS 46 (48)
T ss_dssp CCBTTTBCEEECSSSSSEEECSCCTTTTCS
T ss_pred ccccCCCCcEEEEecCCcccchhhhhhccc
Confidence 589999999865555556665555544444
No 5
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.49 E-value=39 Score=21.69 Aligned_cols=27 Identities=37% Similarity=0.397 Sum_probs=22.1
Q ss_pred ChHHHHHHHhhHhHHHHHHHHHHhcCC
Q psy15316 104 DRHLFEKQMSVMRGQILNLNQALKDGK 130 (145)
Q Consensus 104 D~~~F~kQmsvmrgqi~nl~~al~~~k 130 (145)
|-.-=+=|++++.-.|-||++-|+..+
T Consensus 19 DtGS~evQiA~lT~rI~~L~~Hlk~~k 45 (85)
T d1a32a_ 19 DTGSPEVQIAILTEQINNLNEHLRVHK 45 (85)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHhhHHHHHHHHHHHHHCc
Confidence 444457799999999999999998655
No 6
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}
Probab=17.00 E-value=28 Score=24.44 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=16.7
Q ss_pred cEEEEecCCCCCCCCCCCCc
Q psy15316 8 KKIGVFKPKDEEPYGRLNPK 27 (145)
Q Consensus 8 ~~vgvfKPkdEEPyg~lnPk 27 (145)
..||+|-|.+-+=|+|.++.
T Consensus 282 p~i~lfg~~~~~~~~P~~~~ 301 (348)
T d1pswa_ 282 PLVALYGPSSPDFTPPLSHK 301 (348)
T ss_dssp CEEEEESSSCTTSSCCCCTT
T ss_pred CEEEEECCCCHhhhCCCCCC
Confidence 57999999998888887764
No 7
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=15.11 E-value=55 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCChHHHHHHHhhHhHH-----HHHHHHHHhcCCCcchhhcC
Q psy15316 101 KGFDRHLFEKQMSVMRGQ-----ILNLNQALKDGKSPVQLVQM 138 (145)
Q Consensus 101 kgfD~~~F~kQmsvmrgq-----i~nl~~al~~~ksp~~lvqm 138 (145)
--+||..+.-|+.+.+-. +.-+-+||-+|-||++|-+|
T Consensus 13 qplsPRtlnaWVK~veek~f~pEvipmF~ALSeg~tP~D~n~m 55 (145)
T d2pxrc1 13 QAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTM 55 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCCChHHHHHH
Confidence 346888888888887754 56689999999999999877
No 8
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=14.11 E-value=50 Score=21.37 Aligned_cols=31 Identities=6% Similarity=0.324 Sum_probs=22.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHhcCCCcchhhc
Q psy15316 106 HLFEKQMSVMRGQILNLNQALKDGKSPVQLVQ 137 (145)
Q Consensus 106 ~~F~kQmsvmrgqi~nl~~al~~~ksp~~lvq 137 (145)
-||...++-++.|+- ....-.+|.||.++..
T Consensus 47 EFFmVRVAgLk~q~~-~~~~~~dg~tp~e~L~ 77 (105)
T d1xdpa1 47 EFYKVRFAELKRRII-ISEEQGSNSHSRHLLG 77 (105)
T ss_dssp HHHHTHHHHHHHHHH-HHHHHCCCSCHHHHHH
T ss_pred HHHHhhHHHHHHHHH-cCCCCCCCCCHHHHHH
Confidence 488888888888876 4455578888876543
No 9
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=13.90 E-value=21 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=16.8
Q ss_pred CCCCCCCCCchhhhhhhhcc
Q psy15316 18 EEPYGRLNPKWTKWMHKLCC 37 (145)
Q Consensus 18 EEPyg~lnPkw~kw~~r~~~ 37 (145)
+||-..++|+|.+++.+.+.
T Consensus 232 DEp~~~Ld~~~~~~l~~~l~ 251 (292)
T g1f2t.1 232 DEPTPYLDEERRRKLITIME 251 (292)
T ss_dssp ESCSCTTCHHHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHH
Confidence 48999999999988877654
No 10
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.91 E-value=13 Score=26.03 Aligned_cols=20 Identities=30% Similarity=0.803 Sum_probs=15.9
Q ss_pred chhhhhhhhccCCCCCCceec
Q psy15316 27 KWTKWMHKLCCPCCFGRACLI 47 (145)
Q Consensus 27 kw~kw~~r~~~~c~fgRsCli 47 (145)
|..|||.|+|-. -+||.|--
T Consensus 80 kVEKWF~RNC~d-VlgReCTa 99 (112)
T d1dw0a_ 80 RVEKWLGRNCNS-VIGRDCTP 99 (112)
T ss_dssp HHHHHHHHHHHH-HHSSCCCH
T ss_pred HHHHHHHhhchh-hhccccCH
Confidence 457999998654 78999985
Done!