RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15316
         (145 letters)



>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase. 
          Some members of this family probably do not have lipid
          kinase activity and are protein kinases, .
          Length = 233

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 8/50 (16%), Positives = 11/50 (22%), Gaps = 6/50 (12%)

Query: 32 MHKLCCPCCFGRACLIPNQGYLSEAGAS------LVDQKLGLNIVPKTKG 75
          +  L      G         YL             V     L  +P+T  
Sbjct: 21 LIGLMNKLLSGEGLDRRLAAYLVIPLGPGSGLIEWVPNSTTLAEIPRTYM 70


>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
          Length = 2683

 Score = 31.6 bits (71), Expect = 0.16
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 16/96 (16%)

Query: 47  IPNQGYLSE--AGASLV-------DQKLGLNIVPKTKGYLSEAGASLVDQKLGLNIVPKT 97
           + ++ + ++  AG SLV        Q + L  +  + GY  E+  +L DQK+ L I P  
Sbjct: 132 VADRSFCAQGLAGRSLVAWAQPDPQQTMPLLYLLTSTGYPYESVLALADQKVTLKIAPAQ 191

Query: 98  KE-----DKGFDRHLFEKQMSVMRGQILNLNQALKD 128
            +       G+D      +M+V  G  + L    KD
Sbjct: 192 GDLISVSAAGYDESSGAAKMTV--GGSITLTVTTKD 225



 Score = 30.8 bits (69), Expect = 0.28
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 46  LIPNQGYLSEAGASLVDQKLGLNIVPKTKGYLSEAGASLVDQKLG 90
           L+ + GY  E+  +L DQK+ L I P  +G L    A+  D+  G
Sbjct: 164 LLTSTGYPYESVLALADQKVTLKIAP-AQGDLISVSAAGYDESSG 207


>gnl|CDD|216457 pfam01366, PRTP, Herpesvirus processing and transport protein.  The
           members of this family are associate with capsid
           intermediates during packaging of the virus.
          Length = 635

 Score = 29.5 bits (67), Expect = 0.66
 Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 2/18 (11%)

Query: 36  CCPC--CFGRACLIPNQG 51
             PC  CF   C+ PNQG
Sbjct: 185 SQPCLVCFEELCVTPNQG 202


>gnl|CDD|219718 pfam08088, Toxin_19, Conotoxin I-superfamily.  This family
          consists of the I-superfamily of conotoxins. This is a
          new class of peptides in the venom of some Conus
          species. These toxins are characterized by four
          disulfide bridges and inhibit of modify ion channels of
          nerve cells. The I-superfamily conotoxins is found in
          five or six major clades of cone snails and could
          possible be found in many more species.
          Length = 40

 Score = 26.3 bits (58), Expect = 1.1
 Identities = 6/13 (46%), Positives = 6/13 (46%)

Query: 33 HKLCCPCCFGRAC 45
          H  CC CC    C
Sbjct: 15 HADCCNCCLIGIC 27


>gnl|CDD|116555 pfam07945, Toxin_16, Janus-atracotoxin.  This family includes
          three peptides secreted by the spider Hadronyche
          versuta. These are insect-selective, excitatory
          neurotoxins that may function by antagonising muscle
          acetylcholine receptors, or acetylcholine receptor
          subtypes present in other invertebrate neurons. Janus
          atracotoxin-Hv1c (J-ACTX-Hv1c) is organised into a
          disulphide-rich globular core (residues 3-19) and a
          beta-hairpin (residues 20-34). There are 4 disulphide
          bridges, one of which is a vicinal disulphide bridge;
          this is known to be unimportant in the maintenance of
          structure but critical for insecticidal activity.
          Length = 36

 Score = 25.0 bits (54), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 36 CCPCCFGRACLIPNQGYLS 54
          CCPCC G +C  P    +S
Sbjct: 13 CCPCCPGTSCKAPEPNGVS 31


>gnl|CDD|235854 PRK06703, PRK06703, flavodoxin; Provisional.
          Length = 151

 Score = 26.3 bits (58), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 77  LSEAGASLVDQKLGLNIVPKTKED 100
           L E GA LV + L + + P+T ED
Sbjct: 109 LVERGAELVQEGLKIELAPETDED 132


>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase.
          Length = 668

 Score = 26.2 bits (57), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 99  EDKGFDRHLFEKQMSVMRGQ 118
           + KGFD  +FEK +S +RG+
Sbjct: 101 KKKGFDVLVFEKDLSAIRGE 120


>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
           [Intracellular trafficking and secretion].
          Length = 776

 Score = 26.1 bits (57), Expect = 8.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 1   MSYVPIHKKIGVFKPKDE 18
            SYV     IGVFK  DE
Sbjct: 430 RSYVTRGNSIGVFKNTDE 447


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,220,324
Number of extensions: 608926
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 16
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)