RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15316
(145 letters)
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Salmonella enterica
subsp}
Length = 425
Score = 30.7 bits (68), Expect = 0.15
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 115 MRGQILNLNQALK---DGKSPVQ 134
I L QA + DG S Q
Sbjct: 13 FTSNIKGLTQASRNANDGISIAQ 35
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 29.2 bits (65), Expect = 0.44
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 115 MRGQILNLNQALK---DGKSPVQ 134
M QI L QA + DG S Q
Sbjct: 34 MTAQIKGLTQAQRNANDGISLAQ 56
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Length = 494
Score = 28.9 bits (64), Expect = 0.57
Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 115 MRGQILNLNQALK---DGKSPVQ 134
I L QA + DG S Q
Sbjct: 53 FTANIKGLTQASRNANDGISIAQ 75
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus}
SCOP: c.23.5.1
Length = 173
Score = 28.3 bits (63), Expect = 0.64
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 7 HKKIGVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQGYLSEAGASLVDQK-L 65
+ +F D E Y + +H Y E S+ D K L
Sbjct: 84 DLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFL 143
Query: 66 GLNI 69
GL +
Sbjct: 144 GLPL 147
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport;
HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A*
1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A
2kqu_A 3esy_A* 3esz_A* 3esx_A*
Length = 169
Score = 28.3 bits (63), Expect = 0.68
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 7 HKKIGVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQGYLSEAGASLVDQK-L 65
K + F D+ Y + + GY +L + K +
Sbjct: 80 GKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFV 139
Query: 66 GLNI 69
GL +
Sbjct: 140 GLAL 143
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot,
vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Length = 37
Score = 25.1 bits (54), Expect = 2.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 36 CCPCCFGRACLIPNQG 51
CCPCC G +C + G
Sbjct: 13 CCPCCPGTSCKAESNG 28
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound
FMN, electron transport; HET: FMN; 2.25A {Azotobacter
vinelandii} SCOP: c.23.5.1
Length = 179
Score = 25.7 bits (56), Expect = 5.5
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 7 HKKIGVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQGYLSEAGASLVDQK-L 65
K + +F D+ Y ++ GY E+ ++VD K +
Sbjct: 88 GKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFV 147
Query: 66 GLNI 69
GL +
Sbjct: 148 GLAL 151
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 26.1 bits (58), Expect = 5.6
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 14/51 (27%)
Query: 94 VPKTKEDKGFDRHLF-EKQMSVM----------RGQILN---LNQALKDGK 130
P K+ HL E + + RG +++ L L G+
Sbjct: 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 7.3
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 30/89 (33%)
Query: 15 PKDEEP-YGR-LNPKWTKWMHKLCCPCCFGRACLIPNQGYLSEAGASL----VDQ----- 63
D E + + LN +W+ P++ YL S V Q
Sbjct: 202 TLDAEKVFTQGLNIL--EWLEN---------PSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 64 ----KLGLN---IVPKTKGYLSEAGASLV 85
LG + KG + LV
Sbjct: 251 VTAKLLGFTPGELRSYLKG-ATGHSQGLV 278
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 25.3 bits (56), Expect = 7.8
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 14/51 (27%)
Query: 94 VPKTKEDKGFDRHLF-EKQMSVM----------RGQILN---LNQALKDGK 130
P ++ + RHL E +++ + RG +++ L + L+ G
Sbjct: 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
>1agg_A Omega-AGA-IVB, omega-agatoxin-IVB; neurotoxin, P-type calcium
channel antagonist; NMR {Agelenopsis aperta} SCOP:
g.3.6.2 PDB: 1oma_A 1omb_A 1iva_A 1oav_A 1oaw_A
Length = 48
Score = 23.5 bits (50), Expect = 9.3
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 38 PCCFGRACLIPNQGYLSEAGASLVDQKLGL 67
CC GR C G E L+ + L
Sbjct: 18 KCCRGRPCRCSMIGTNCECTPRLIMEGLSF 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,163,598
Number of extensions: 114029
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 11
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)