Query psy15318
Match_columns 566
No_of_seqs 202 out of 442
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 17:57:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3910|consensus 100.0 1E-114 2E-119 907.7 35.1 456 17-525 93-605 (632)
2 KOG4029|consensus 99.6 3E-16 6.5E-21 153.0 3.9 68 438-506 101-169 (228)
3 KOG3960|consensus 99.6 1.3E-15 2.7E-20 152.0 7.1 70 439-510 111-180 (284)
4 KOG3898|consensus 99.5 1.7E-15 3.8E-20 151.3 2.0 62 442-504 68-129 (254)
5 KOG4395|consensus 99.3 1.1E-12 2.4E-17 131.3 5.6 63 441-504 169-231 (285)
6 PF00010 HLH: Helix-loop-helix 99.3 1.1E-11 2.4E-16 96.1 6.7 54 446-499 1-55 (55)
7 cd00083 HLH Helix-loop-helix d 99.2 5.5E-11 1.2E-15 92.1 7.2 58 444-502 2-59 (60)
8 smart00353 HLH helix loop heli 99.1 1.6E-10 3.6E-15 88.2 7.0 52 451-503 1-52 (53)
9 KOG4447|consensus 99.1 5.8E-11 1.3E-15 112.0 3.9 64 446-511 78-142 (173)
10 KOG0561|consensus 98.9 1.3E-09 2.7E-14 112.0 5.3 59 443-503 57-115 (373)
11 KOG1319|consensus 97.8 4.8E-05 1E-09 74.7 7.8 64 441-504 56-123 (229)
12 KOG1318|consensus 97.8 6E-05 1.3E-09 81.0 7.9 66 438-503 225-290 (411)
13 KOG2483|consensus 96.6 0.0045 9.8E-08 62.5 6.4 59 445-504 58-116 (232)
14 KOG3561|consensus 96.4 0.0046 1E-07 71.5 5.7 57 445-501 19-75 (803)
15 KOG4447|consensus 95.7 0.0051 1.1E-07 59.2 1.8 51 450-502 25-76 (173)
16 KOG4304|consensus 95.5 0.016 3.4E-07 59.1 4.4 50 453-502 39-92 (250)
17 KOG2588|consensus 93.0 0.11 2.5E-06 61.0 4.9 57 444-503 274-330 (953)
18 KOG3558|consensus 78.4 3.1 6.7E-05 48.4 5.2 48 455-503 55-102 (768)
19 PLN03217 transcription factor 57.0 20 0.00043 32.2 4.6 48 456-504 17-67 (93)
20 KOG3910|consensus 50.6 1.2E+02 0.0025 35.0 10.2 16 288-303 355-370 (632)
21 KOG3560|consensus 45.3 13 0.00029 42.5 2.1 36 460-497 39-76 (712)
22 PF13801 Metal_resist: Heavy-m 44.4 1.9E+02 0.0041 24.3 8.8 67 431-504 39-105 (125)
23 smart00517 PolyA C-terminal do 43.4 16 0.00035 30.8 1.9 17 303-319 48-64 (64)
24 KOG3559|consensus 43.3 22 0.00048 39.7 3.4 50 450-502 7-56 (598)
25 KOG4661|consensus 34.9 1.7E+02 0.0036 34.5 8.5 48 444-494 615-662 (940)
26 KOG2264|consensus 33.8 2E+02 0.0043 34.0 8.8 46 458-510 109-154 (907)
27 PF10392 COG5: Golgi transport 30.7 85 0.0019 28.9 4.6 19 455-473 78-96 (132)
28 KOG2507|consensus 29.7 18 0.0004 40.4 0.2 29 431-459 244-272 (506)
29 KOG0386|consensus 29.4 1.1E+02 0.0024 37.8 6.3 61 440-507 278-340 (1157)
30 KOG1015|consensus 28.0 38 0.00081 41.7 2.2 45 414-461 582-629 (1567)
31 PHA02414 hypothetical protein 26.3 1.3E+02 0.0028 27.9 4.8 57 451-510 24-82 (111)
32 PF02413 Caudo_TAP: Caudoviral 25.0 1.3E+02 0.0029 27.5 4.8 54 444-500 61-114 (130)
33 PF08651 DASH_Duo1: DASH compl 22.6 2.4E+02 0.0052 24.5 5.6 36 452-493 4-39 (78)
34 KOG1318|consensus 21.4 3.2E+02 0.007 30.6 7.6 24 480-503 301-324 (411)
35 PF04518 Effector_1: Effector 20.1 3.6E+02 0.0078 30.0 7.5 45 459-504 217-264 (379)
No 1
>KOG3910|consensus
Probab=100.00 E-value=1e-114 Score=907.74 Aligned_cols=456 Identities=39% Similarity=0.566 Sum_probs=363.6
Q ss_pred CcccccCCCCCCCCCCCCC----CCCCcCCC-CCCCCCCCCccc--ccccccCCCCCCCCcCCCCCCccccCCCCCCCCC
Q psy15318 17 NGMSYSNSYANNNTDSFSP----DSPYFPFI-MPPGRTVPPASI--KRKRESIEPPENSDVDGAHGWYDEFGQASSPRFV 89 (566)
Q Consensus 17 ~~~~~~~~~~~~sp~~lSp----~Sqyy~~~-~nprRr~~~~~~--kk~r~kvppglpSsVy~ps~s~ddf~r~Ds~~Yp 89 (566)
-|.+|.+++++++|++||| ++|||+|. +++|||+.+.++ .||+||||||||++||.|+ ++||+| |+++||
T Consensus 93 ~g~~l~g~~a~~npgpLS~~gk~~sqyy~~~~g~~rrr~~~g~~~q~kkvrkVppGLPsSvy~Ps--s~d~~r-~~~~yp 169 (632)
T KOG3910|consen 93 SGCLLMGDLALGNPGPLSPSGKPGSQYYHQSSGSSRRRPLHGALDQDKKVRKVPPGLPSSVYAPS--SQDYGR-DSPAYP 169 (632)
T ss_pred ccccccchhccCCCCCcCCCCCCCceeeeccCCCccCCCCcccccCCCccccCCCCCcccccCCC--ccccCC-CCcCcc
Confidence 3448999999999999997 79999886 688999999877 4555599999999999985 899999 999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15318 90 SHKPNPSSIYTDPYYINNTGGGPGDPWAGG-GPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPS 168 (566)
Q Consensus 90 SpK~p~ss~yp~~Fym~g~~~~s~DpWs~s-G~~q~~sgy~~ms~p~~~l~~~sshl~q~~y~~~~lh~~herm~Y~~hs 168 (566)
++|++ +.+||+.|||..++|++.|+|+++ +|.|+ +|++| +++.++||+|++ +|+.+| +|+||.|++|+
T Consensus 170 a~k~p-~v~~Pa~f~~pdg~H~ss~~~s~s~~~~q~--~~gg~------lln~tphm~~ss-~~~~lh-~h~r~~yp~H~ 238 (632)
T KOG3910|consen 170 APKPP-TVMFPAAFFMPDGHHNSSDLWSPSTGMMQP--GFGGM------LLNSTPHMPQSS-SYGTLH-PHERLSYPPHS 238 (632)
T ss_pred CCCCC-cccCccccccccCcCccccccCCccccCCC--Ccccc------cCCCCCCCcccc-ccCccc-ccccccCCCCc
Confidence 99999 999999999965568899999988 67888 99999 667789999988 779999 99999999997
Q ss_pred CCCCCCCCCccCCCCCCCCCcccCCCCCC--CCCCCCCCCCCCCCCCcCCCC--CCCCChhhccchhccCCCCCCCCCCC
Q psy15318 169 GGPADSSNISSITASPLPPMSTIRNPAAA--SGVQSPSLYPGHNSPIVQTTG--PGPGDTVGKALASIYPADQSASSYSS 244 (566)
Q Consensus 169 ~~~~~~~~~~~~~~~~LPPMSsF~~~~~~--~g~~s~~~~~g~~~~~~~~~~--s~tGDaLGKALASIYspDhssssFsS 244 (566)
.. +||.+||||++|++.+++ +++.|-......++.++++++ ++|||++||||||||++|||+++|+|
T Consensus 239 s~---------~~n~~lpp~stfs~a~as~~~~ass~tppi~gtds~m~trgsagStgdapgkalasi~spdht~~~~~s 309 (632)
T KOG3910|consen 239 SA---------DINPSLPPMSTFSSAGASVVYSASSHTPPINGTDSIMGTRGSAGSTGDAPGKALASIYSPDHTSNSFSS 309 (632)
T ss_pred cc---------ccCCCCCCccccccCCcccccccccCCCcccccccccccCCcccccCCCCCcccccccCCCccCCCCCC
Confidence 52 588899999999887665 333221100012244444443 36999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcCCCCCCCC--CCCCCCCCCCCccccccchhhhhhhhhhhhhcccccchhhH---hHHHHHHHHhhc
Q psy15318 245 NPSTPVSSPPPLSAQNSEWVSG--PHASSPHFTSDHRGLHMSIPEQQRLDEAIGYLRSHTEGMEE---CLDDAINVIRNH 319 (566)
Q Consensus 245 nPSTPVgSP~pL~~~~sqW~r~--~~~~SP~ye~~~~~lh~l~~~q~~~~~a~~~l~~~~srmEd---rLDdAIhVLRnH 319 (566)
|||||||||++|++ ++||+|. +...+|+||+ +||+| |+|||| ||||||||||||
T Consensus 310 ~pStpvgSp~~ltg-t~~~pr~g~a~~sspsy~~---slh~l-----------------qs~~Ed~~erLddAihvLrnh 368 (632)
T KOG3910|consen 310 NPSTPVGSPQPLTG-TSQWPRPGGAASSSPSYEG---SLHGL-----------------QSRIEDRLERLDDAIHVLRNH 368 (632)
T ss_pred CCCCCCCCCCCccc-ccCCCCCCcccccCCCCCC---ccccc-----------------cccccchhhhhHHHHHHhhcc
Confidence 99999999999996 7999985 5566999999 78887 678887 899999999999
Q ss_pred cccC-CCCCCCCCCCCCCCccc-c--------------cCCCCCCccc-ccc--c--CCCCCc-----ccCCCCCC--CC
Q psy15318 320 ADGQ-LNLPGLSHPSPGGSLLY-H--------------QHLGNSHAVS-STV--G--AIPAGY-----LAGLASSS--DT 371 (566)
Q Consensus 320 AvG~-~~l~g~~h~~~~g~l~~-~--------------~~l~~~h~~~-~~~--~--~l~~~~-----~~~l~~~~--~~ 371 (566)
|||+ +++++ +|.|||++|.+ | +...++|..+ ++. . +|.+.. ...++++. .+
T Consensus 369 av~p~~a~~~-~~~D~ht~~~PsH~g~~G~lgS~~~t~~~~~~r~~~lvGth~ed~~~lgG~~sL~~~~~~~psqs~t~P 447 (632)
T KOG3910|consen 369 AVGPSTAAPI-GHGDMHTLLGPSHNGYGGTLGSGYGTSLDASSRHALLVGTHPEDTVGLGGSTSLLSNNVQFPSQSGTSP 447 (632)
T ss_pred ccCccccccc-ccccccccccccccccccccccCCCcchhhhhhhhhhhccCcCCccccCCccccccccccCCCcCCCCc
Confidence 9998 45665 78999988843 2 1112233321 111 0 232221 11222221 11
Q ss_pred CCC-------cccccc----cccccccccccccccC-ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCChHHH
Q psy15318 372 DGH-------IKIENI----ANSSKKRKELTIDTKT-ESICSDQMNSVTSPTNSTSNKGSKRSRRYCSSADEDSEDPQTK 439 (566)
Q Consensus 372 ~~~-------~~~~r~----~~~~~kree~~d~~~~-~~~ss~~~~~~~~~~~s~~~k~~K~~R~~~s~~~~~d~~p~~k 439 (566)
+++ ..+.+. ...+||+++||++|+. ..+++++++ .+.|..|+.|++.+.++|||+.|++|
T Consensus 448 dl~k~~e~y~g~l~g~s~tssassik~ddke~~es~~~~~ss~~~k--------~qg~~~k~irt~sS~dedddl~peqk 519 (632)
T KOG3910|consen 448 DLNKPPEGYRGGLQGQSPTSSASSIKNDDKEPDESLSRSNSSEDRK--------SQGKPSKRIRTRSSSDEDDDLNPEQK 519 (632)
T ss_pred ccCCCCCCCcccccCCCCccccceeeccccCcccccccCcchhhhh--------hcCCCCCCCCccCCcccccccChhhh
Confidence 111 112222 2458899997776654 344555433 23455778888777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCchhHhhhhhhh
Q psy15318 440 AMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNLNPKAACLRRREE 519 (566)
Q Consensus 440 ~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~nlnpk~~clkrree 519 (566)
++||||||+|||||||+|||||||||+||.|||++|++.||.+|||.||++||++|..|||||||||||||++|+|||||
T Consensus 520 aeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNLNPKaaclkRRee 599 (632)
T KOG3910|consen 520 AEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNLNPKAACLKRREE 599 (632)
T ss_pred hhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccCChhhhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC
Q psy15318 520 EKAEDS 525 (566)
Q Consensus 520 eK~~g~ 525 (566)
||++++
T Consensus 600 Ekvs~~ 605 (632)
T KOG3910|consen 600 EKVSMV 605 (632)
T ss_pred hhhccc
Confidence 999875
No 2
>KOG4029|consensus
Probab=99.61 E-value=3e-16 Score=152.95 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy15318 438 TKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKT-DKPQTKLGILNMAVEVIMSLEQQVRERN 506 (566)
Q Consensus 438 ~k~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~-dKklSKieiLr~Ai~YI~~L~~~Lre~n 506 (566)
.+......+|+++|+|||.||+.||.||.+||..|| ..+. +||||||+|||+||.||.+|.++|....
T Consensus 101 ~~~~~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP-~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 101 SKSSQTSAQRQARNARERQRVQSVNSAFAELRALLP-TEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred ccccchhhhhhhhhhhhhhcccchhhhhHHHHhcCC-CCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 344456789999999999999999999999999999 6677 9999999999999999999999998754
No 3
>KOG3960|consensus
Probab=99.59 E-value=1.3e-15 Score=152.01 Aligned_cols=70 Identities=29% Similarity=0.442 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCch
Q psy15318 439 KAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNLNPK 510 (566)
Q Consensus 439 k~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~nlnpk 510 (566)
|.....+||+||..|||+|+++|||||+.|+|.. ..+++++|.|+||||.||+||..||++|++.+.+.+
T Consensus 111 rks~svDRRKAATMRERRRLkKVNEAFE~LKRrT--~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 111 RKSTSVDRRKAATMRERRRLKKVNEAFETLKRRT--SSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4445678999999999999999999999998743 457889999999999999999999999999876655
No 4
>KOG3898|consensus
Probab=99.53 E-value=1.7e-15 Score=151.27 Aligned_cols=62 Identities=29% Similarity=0.363 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 442 rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
..+.||.++|+|||.||++||+||+.||.+|| ++..+.||+||||||+|.+||+.|+++++.
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP-~~~~~~klskIetl~~a~~yi~als~~~ls 129 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIP-HGLHPPKLSKIETLRLAANYIAALSEVLLS 129 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhcc-CcCCCCCCCcchhHHhhhcchhhhcccccc
Confidence 67899999999999999999999999999999 799999999999999999999999999875
No 5
>KOG4395|consensus
Probab=99.33 E-value=1.1e-12 Score=131.34 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 441 MREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 441 ~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
...+.||.++|+|||+||..||.||++||.++| ....+|||||.|||++|..||..|..+|..
T Consensus 169 ~v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p-~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 169 SVNSHRRLAANARERRRMNGLNSAFDRLRLVVP-DGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred hHHHhhhcccchHHHHHhhhHHHHHHHHHHhcC-CCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 456789999999999999999999999999999 889999999999999999999999999854
No 6
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.26 E-value=1.1e-11 Score=96.15 Aligned_cols=54 Identities=33% Similarity=0.453 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCHHHHHHHHHHHHHHHH
Q psy15318 446 RRQANNVRERIRIRDINEALKELGRMCMAH-LKTDKPQTKLGILNMAVEVIMSLE 499 (566)
Q Consensus 446 RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~-~~~dKklSKieiLr~Ai~YI~~L~ 499 (566)
||+..|++||.|..+||.+|++|+.+||.. ....+|++|++||+.||+||..|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999942 136788999999999999999986
No 7
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.19 E-value=5.5e-11 Score=92.13 Aligned_cols=58 Identities=41% Similarity=0.527 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~L 502 (566)
..+|...|.+||.|..+||.+|++|+.+|| .....++++|+.||+.||+||..|++.+
T Consensus 2 ~~~r~~~~~~Er~RR~~~n~~~~~L~~llp-~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 2 KSRREAHNLRERRRRERINDAFDELRSLLP-TLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999 4446799999999999999999999876
No 8
>smart00353 HLH helix loop helix domain.
Probab=99.12 E-value=1.6e-10 Score=88.18 Aligned_cols=52 Identities=42% Similarity=0.574 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 451 NVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 451 NaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
|++||.|...||+.|++|+.+|| ......+++|+.||..||+||..|++.+.
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip-~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLP-TLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999 44468899999999999999999998875
No 9
>KOG4447|consensus
Probab=99.09 E-value=5.8e-11 Score=111.96 Aligned_cols=64 Identities=36% Similarity=0.492 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc-cCCchh
Q psy15318 446 RRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRER-NLNPKA 511 (566)
Q Consensus 446 RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~-nlnpk~ 511 (566)
+|.-+|.|||.|-++||+||+.||..+| ++|.+| ||||.||++|..||.+|-++|... -+.++.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iip-tlPsdk-lSkiqtLklA~ryidfl~~vl~s~l~~~~~~ 142 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIP-TLPSDK-LSKIQTLKLAARYIDFLYQVLQSDLELDPKM 142 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcC-CCCccc-cccccchhhcccCCchhhhcccccccccccc
Confidence 8999999999999999999999999999 889987 999999999999999999999865 455554
No 10
>KOG0561|consensus
Probab=98.90 E-value=1.3e-09 Score=111.98 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 443 EKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 443 ek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
++.||..||..||+||+.||..|..||.+|| +-. ..||||..||++...||..||..-.
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlP-r~e-GEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLP-RKE-GEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcC-ccc-chhhHHHHHHHHHHHHHHHHHhccc
Confidence 4589999999999999999999999999999 434 4569999999999999999987643
No 11
>KOG1319|consensus
Probab=97.84 E-value=4.8e-05 Score=74.74 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=51.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 441 MREKERRQ-ANNVRERIRIRDINEALKELGRMCMAHLKTD---KPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 441 ~rek~RR~-aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~d---KklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
+.-|+||+ +--.-||.|-..||..|+.|+.+||..-+.+ .|+||..||..+|+||.+|.+....
T Consensus 56 ~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k 123 (229)
T KOG1319|consen 56 ESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK 123 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554 4555699999999999999999999655544 5899999999999999999877654
No 12
>KOG1318|consensus
Probab=97.77 E-value=6e-05 Score=80.96 Aligned_cols=66 Identities=30% Similarity=0.413 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 438 TKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 438 ~k~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
+..+|+++||.--|+=||+|-.+||...+||..+||.....+-|+-|=-||..++.||..|.+.+.
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 555678888899999999999999999999999999777778889999999999999999988775
No 13
>KOG2483|consensus
Probab=96.58 E-value=0.0045 Score=62.53 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 445 ~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
..|...|+=||.|--.|-+-|+.||..|| .++.+|+.+.+.||+.|+.||..|+...++
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP-~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVP-LLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCC-CCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 35777889999999999999999999999 888889888999999999999999888764
No 14
>KOG3561|consensus
Probab=96.37 E-value=0.0046 Score=71.49 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15318 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQ 501 (566)
Q Consensus 445 ~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~ 501 (566)
..|..+|.=||+|-..+|.-++||-.|||......+|+-|+.|||.||..|+.+..+
T Consensus 19 ~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 19 KKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 338899999999999999999999999997777889999999999999999988775
No 15
>KOG4447|consensus
Probab=95.73 E-value=0.0051 Score=59.17 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=44.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 450 NNVR-ERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 450 aNaR-ER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~L 502 (566)
+|.| ||-|-+.+|.||.-||.++| ..+.++ .+|+.+|+.+..||.+|+++-
T Consensus 25 ~r~~~e~~R~~~ls~~s~l~g~l~p-gspa~g-k~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 25 DRQRKERGRKRRLSDASTLLGKLEP-GSPADG-KRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhHHHHhHHhhhhhhhhhccccCC-CCCCcc-cccccccccCCCchhhHHHHH
Confidence 3444 99999999999999999999 778776 789999999999999998874
No 16
>KOG4304|consensus
Probab=95.46 E-value=0.016 Score=59.09 Aligned_cols=50 Identities=30% Similarity=0.368 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCC----CCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 453 RERIRIRDINEALKELGRMCMAHLKTD----KPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 453 RER~Rmr~IN~AF~eLRr~~p~~~~~d----KklSKieiLr~Ai~YI~~L~~~L 502 (566)
=||+|--.||+-+++||++|+..+..+ .||-|-|||.++++|++.|++.-
T Consensus 39 ~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 39 LEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 355555779999999999998666554 67888899999999999987654
No 17
>KOG2588|consensus
Probab=93.03 E-value=0.11 Score=61.03 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
++||++-|+=|++=--+||+-..|||..|| ..+-|+.|-+.||.||+||..|+....
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~---g~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVP---GTEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcC---ccHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 588999999999988999999999999998 667899999999999999999976643
No 18
>KOG3558|consensus
Probab=78.45 E-value=3.1 Score=48.36 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 455 RIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 455 R~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
|-|--+=|+-|.||.+++|+.-.---.|-|+.|+|+||.|++ |.+.+.
T Consensus 55 RsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk~a~ 102 (768)
T KOG3558|consen 55 RSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRKFAG 102 (768)
T ss_pred hhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHHHhh
Confidence 334467789999999999844445567999999999999986 555554
No 19
>PLN03217 transcription factor ATBS1; Provisional
Probab=57.00 E-value=20 Score=32.22 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 456 IRIRDINEALKELGRMCMAHLK---TDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 456 ~Rmr~IN~AF~eLRr~~p~~~~---~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
+--..||+-.-.|+.++| ... ...|.+--.+|+.+.+||..|.+-|.+
T Consensus 17 isddqi~dLvsKLq~llP-e~r~~r~s~k~saskvLqEtC~YIrsLhrEvDd 67 (93)
T PLN03217 17 ISEDQINDLIIKLQQLLP-ELRDSRRSDKVSAARVLQDTCNYIRNLHREVDD 67 (93)
T ss_pred CCHHHHHHHHHHHHHHCh-HHHhhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 334679999999999998 322 234577779999999999999887753
No 20
>KOG3910|consensus
Probab=50.58 E-value=1.2e+02 Score=35.01 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=14.6
Q ss_pred hhhhhhhhhhcccccc
Q psy15318 288 QQRLDEAIGYLRSHTE 303 (566)
Q Consensus 288 q~~~~~a~~~l~~~~s 303 (566)
.+||||||..||.++.
T Consensus 355 ~erLddAihvLrnhav 370 (632)
T KOG3910|consen 355 LERLDDAIHVLRNHAV 370 (632)
T ss_pred hhhhHHHHHHhhcccc
Confidence 5799999999999986
No 21
>KOG3560|consensus
Probab=45.34 E-value=13 Score=42.54 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhcCCCCCC--CCCCHHHHHHHHHHHHHH
Q psy15318 460 DINEALKELGRMCMAHLKTD--KPQTKLGILNMAVEVIMS 497 (566)
Q Consensus 460 ~IN~AF~eLRr~~p~~~~~d--KklSKieiLr~Ai~YI~~ 497 (566)
.||.-+|.|-.++| ++.+ -||-||.+||+++.|++.
T Consensus 39 RLNaELD~lAsLLP--fpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 39 RLNAELDHLASLLP--FPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred HhhhHHHHHHHhcC--CCHHHHhhhhhhhhhhhhHHHHHH
Confidence 38999999988888 3433 478899999999999763
No 22
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=44.43 E-value=1.9e+02 Score=24.27 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 431 EDSEDPQTKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 431 ~~d~~p~~k~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
..+++++++.+.++.++......+..| +.+-.+..+|+..+- .-+.|. +-|+.+++=|..++..++.
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r-~~~~~~r~~l~~ll~-~~~~D~-----~~i~a~~~~~~~~~~~l~~ 105 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALR-QELRAARQELRALLA-APPPDE-----AAIEALLEEIREAQAELRQ 105 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-CSSS-H-----HHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHHHHHHHHH
Confidence 456889999998888887777777777 666677888877665 223332 2345555555556555543
No 23
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=43.43 E-value=16 Score=30.79 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=14.7
Q ss_pred chhhHhHHHHHHHHhhc
Q psy15318 303 EGMEECLDDAINVIRNH 319 (566)
Q Consensus 303 srmEdrLDdAIhVLRnH 319 (566)
.-+.+++|||+.|||+|
T Consensus 48 ~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 48 ELLRSKVDEALEVLKSH 64 (64)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 35778999999999987
No 24
>KOG3559|consensus
Probab=43.34 E-value=22 Score=39.66 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 450 NNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 450 aNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~L 502 (566)
+.||-|+.| -|..|-||-+.+|+...-.-.+-|..|+|++..||+ |..+.
T Consensus 7 naA~tRRek--EN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlK-mr~vF 56 (598)
T KOG3559|consen 7 NAARTRREK--ENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLK-MRNVF 56 (598)
T ss_pred hHHHHHHHh--hcchHHHHHhhccchhhhhhccchhhhhhHHHHHHH-HHHhc
Confidence 445555444 466899999999854444455999999999999997 55544
No 25
>KOG4661|consensus
Probab=34.92 E-value=1.7e+02 Score=34.49 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEV 494 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~Y 494 (566)
++.|+...++||.|++.-.+--++++ +. +--.++.--|++.||++..-
T Consensus 615 kE~Rr~Re~eer~RirE~rerEqR~~--a~-~ERee~eRl~~erlrle~qR 662 (940)
T KOG4661|consen 615 KEERRRREAEERQRIREEREREQRRK--AA-VEREELERLKAERLRLERQR 662 (940)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777776544333332 22 21222223355666665443
No 26
>KOG2264|consensus
Probab=33.78 E-value=2e+02 Score=33.95 Aligned_cols=46 Identities=35% Similarity=0.492 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCch
Q psy15318 458 IRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNLNPK 510 (566)
Q Consensus 458 mr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~nlnpk 510 (566)
+..||.-.++|++.|+ +++..|+-|+.-|+--..-.+-|+++| |||
T Consensus 109 I~~~n~kiEelk~~i~------~~q~eL~~Lk~~ieqaq~~~~El~~~n-~pk 154 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIP------QKQLELSALKGEIEQAQRQLEELRETN-NPK 154 (907)
T ss_pred HHHHHHHHHHHHHHHH------HhHHHHHHHHhHHHHHHHHHHHHHhhc-CCc
Confidence 5678888899998887 345555555555544433333444454 444
No 27
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=30.69 E-value=85 Score=28.91 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy15318 455 RIRIRDINEALKELGRMCM 473 (566)
Q Consensus 455 R~Rmr~IN~AF~eLRr~~p 473 (566)
|-+|..||..|++||+.|-
T Consensus 78 ~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 78 RSSVESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578899999999998774
No 28
>KOG2507|consensus
Probab=29.72 E-value=18 Score=40.37 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy15318 431 EDSEDPQTKAMREKERRQANNVRERIRIR 459 (566)
Q Consensus 431 ~~d~~p~~k~~rek~RR~aaNaRER~Rmr 459 (566)
++++.......|.++|....-+|||+|-+
T Consensus 244 ~ee~tkrm~eqrkrer~e~~aareRI~aq 272 (506)
T KOG2507|consen 244 TEENTKRMREQRKRERKEGTAARERILAQ 272 (506)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44456666777788888889999999865
No 29
>KOG0386|consensus
Probab=29.38 E-value=1.1e+02 Score=37.77 Aligned_cols=61 Identities=28% Similarity=0.298 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccC
Q psy15318 440 AMREKERRQANNVRERIRIRDIN--EALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNL 507 (566)
Q Consensus 440 ~~rek~RR~aaNaRER~Rmr~IN--~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~nl 507 (566)
.+|+++||...+++||++--..| ++|..| +- -..+++++-+ |++..+||..|..+|++.+.
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl---~d--q~Kd~Rl~~L--L~qt~~yl~sL~s~Vk~qk~ 340 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKL---QD--QKKDNRLSQL--LSQTDSYLPSLSSVVKGQKS 340 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH---Hh--hccccHHHHh--hhhhhHHHHHHHHHHHHhhc
Confidence 45677777788888887754444 344333 32 2345555554 99999999999999998763
No 30
>KOG1015|consensus
Probab=28.04 E-value=38 Score=41.71 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=20.3
Q ss_pred CCCCCCCCCcccCCCCCCCCCChHH--HHHHHHHHHHHH-HHHHHHHHHHH
Q psy15318 414 TSNKGSKRSRRYCSSADEDSEDPQT--KAMREKERRQAN-NVRERIRIRDI 461 (566)
Q Consensus 414 ~~~k~~K~~R~~~s~~~~~d~~p~~--k~~rek~RR~aa-NaRER~Rmr~I 461 (566)
+.+|+.|..|+. .. |+++..++ +...|++||+.- -.|||.|.+++
T Consensus 582 sK~K~rKkiRkI--I~-d~kL~keT~~a~k~EkeRrkRie~~~~rqK~~n~ 629 (1567)
T KOG1015|consen 582 SKGKGRKKIRKI--IK-DDKLRKETQNALKEEKERRKRIEEERERQKLRNV 629 (1567)
T ss_pred ccccchhHHHhh--cc-hhhhchhHHHHHHHHHHHHHHHHHHHHHhhhhce
Confidence 444555555643 22 33443332 223355554432 25666665544
No 31
>PHA02414 hypothetical protein
Probab=26.30 E-value=1.3e+02 Score=27.87 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHh-ccCCch
Q psy15318 451 NVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEV-IMSLEQQVRE-RNLNPK 510 (566)
Q Consensus 451 NaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~Y-I~~L~~~Lre-~nlnpk 510 (566)
|--+|---..||.|..|||.++- .-||.+.=-.--+.+|-| |..|++-+.+ +..|.|
T Consensus 24 elt~kgdn~eL~~av~ELRdivv---slDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~k 82 (111)
T PHA02414 24 ELTDKGDNKELEVAVAELRDIVV---SLDKDVAVNSEKQSHIYYQIERLEEKISALAESNKK 82 (111)
T ss_pred ccccCCchHHHHHHHHHHHHHHH---HhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhcccc
Confidence 33444455789999999999886 345655444445667777 8888887765 334443
No 32
>PF02413 Caudo_TAP: Caudovirales tail fibre assembly protein; InterPro: IPR003458 This family contains Bacteriophage T4 gp38 and related bacterial prophage and phage proteins. Gene 38 of phage T4 codes for a protein containing 183 amino acid residues with molecular weight of 22.3 kDa. Together with genes 36 and 37, whose products are structural proteins of the fibre distal part, gene 38 forms one transcription unit. Gp38, is a chaperone, which is required for assembly of the distal part of the long fibres and which is absent from the mature phage particle. In the absence of gp38 gp37, which is a component of the distal part of the long tail fibre, fails to oligomerise. The carboxy-terminal region of gp37 forms the tip of the distal fibre that interacts with the cell receptors. Functionally the role of gp38 can be replaced by pTfa of Bacteriophage lambda [, , ]. The function of many of the other members of this family remain to be elucidated.
Probab=25.02 E-value=1.3e+02 Score=27.51 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQ 500 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~ 500 (566)
.+.+.+|..+-+.||...|.++..|+..+-+..-.+... ..|..=..|+..|.+
T Consensus 61 ~~~~~~A~~~k~~ll~~A~~~I~~lqda~~lg~atd~e~---~~L~~Wk~Yrv~L~r 114 (130)
T PF02413_consen 61 EELIAQAEAEKQRLLAEASEAIAPLQDAVDLGIATDEEK---ARLKAWKKYRVALNR 114 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccCChHHH---HHHHHHHHHHHHHhc
Confidence 334445555556778899999999998887554444443 334444578888766
No 33
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.57 E-value=2.4e+02 Score=24.50 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Q psy15318 452 VRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVE 493 (566)
Q Consensus 452 aRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~ 493 (566)
.||..-+++||..|+.+-..+- +-.++++.++.+++
T Consensus 4 ~kEL~~Lr~IN~~ie~~~~~L~------~a~~~~~~v~~~~~ 39 (78)
T PF08651_consen 4 EKELEQLRKINPVIEGLIETLR------SAKSNMNRVQETVE 39 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 5888999999999999976664 11255555555553
No 34
>KOG1318|consensus
Probab=21.41 E-value=3.2e+02 Score=30.62 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 480 KPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 480 KklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
+-..|+..|+++|++|+.+...++
T Consensus 301 ~le~~n~~L~~rieeLk~~~~~~~ 324 (411)
T KOG1318|consen 301 KLESTNQELALRIEELKSEAGRHG 324 (411)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhc
Confidence 334788899999998776555443
No 35
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=20.12 E-value=3.6e+02 Score=29.98 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHh
Q psy15318 459 RDINEALKELGRMCMAHLKTDKPQTK---LGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 459 r~IN~AF~eLRr~~p~~~~~dKklSK---ieiLr~Ai~YI~~L~~~Lre 504 (566)
.....|-..|.+++. .+..+.++|+ -+++.....|...|..+++.
T Consensus 217 ~~~~~A~~~l~~~~~-~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~q 264 (379)
T PF04518_consen 217 KSCERAKAVLNKQLA-RVKADAKLTSEQKSELLDSLNNYKDNLNAISNQ 264 (379)
T ss_pred HHHHHHHHHHHHHHH-HHhcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776666 6677888885 58899999999999888874
Done!