Query psy15318
Match_columns 566
No_of_seqs 202 out of 442
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 17:58:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.8 1.9E-21 6.6E-26 155.3 7.3 59 445-504 1-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.8 2.1E-20 7.2E-25 152.8 6.6 60 442-503 8-67 (68)
3 2lfh_A DNA-binding protein inh 99.7 1E-18 3.5E-23 143.3 3.0 51 449-500 17-67 (68)
4 3u5v_A Protein MAX, transcript 99.7 4.4E-18 1.5E-22 141.7 5.8 67 444-510 3-69 (76)
5 4aya_A DNA-binding protein inh 99.7 8.6E-18 2.9E-22 146.1 6.6 62 444-506 23-84 (97)
6 1hlo_A Protein (transcription 99.5 1.4E-13 4.7E-18 114.3 8.3 63 440-504 6-68 (80)
7 1nkp_B MAX protein, MYC proto- 99.3 1.2E-12 4E-17 109.1 6.9 58 445-504 1-58 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.3 2.2E-12 7.4E-17 109.6 8.3 60 443-503 3-62 (88)
9 1nlw_A MAD protein, MAX dimeri 99.2 4.9E-11 1.7E-15 99.9 8.0 56 447-503 2-57 (80)
10 1am9_A Srebp-1A, protein (ster 99.2 9.3E-11 3.2E-15 98.2 8.6 59 443-504 3-61 (82)
11 1an4_A Protein (upstream stimu 99.0 3.4E-11 1.2E-15 96.1 -0.2 57 444-501 3-62 (65)
12 4h10_B Circadian locomoter out 98.9 1.8E-09 6E-14 89.3 7.4 59 442-503 4-62 (71)
13 4ati_A MITF, microphthalmia-as 98.9 3.2E-09 1.1E-13 94.5 7.3 63 441-503 22-84 (118)
14 4h10_A ARYL hydrocarbon recept 98.9 1.6E-09 5.3E-14 89.7 5.0 60 441-500 4-63 (73)
15 1a0a_A BHLH, protein (phosphat 98.8 1.4E-09 4.7E-14 87.5 1.2 57 446-502 2-61 (63)
16 4f3l_A Mclock, circadian locom 98.2 1.1E-06 3.6E-11 88.4 6.2 59 441-502 7-65 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 97.9 5.4E-06 1.8E-10 84.5 4.7 58 442-499 9-66 (387)
18 4ath_A MITF, microphthalmia-as 97.2 0.00052 1.8E-08 58.5 6.0 43 460-502 6-48 (83)
19 3muj_A Transcription factor CO 89.1 0.55 1.9E-05 43.3 5.7 40 460-499 95-134 (138)
20 3lay_A Zinc resistance-associa 50.2 73 0.0025 30.0 9.1 66 432-504 66-131 (175)
21 3mlp_A Transcription factor CO 46.8 3.4 0.00012 43.4 -0.6 54 460-517 321-374 (402)
22 1pd7_B MAD1; PAH2, SIN3, eukar 32.7 32 0.0011 23.7 2.6 20 481-500 1-20 (26)
23 2fi2_A Zinc finger protein 42; 32.4 30 0.001 30.1 3.1 36 462-503 25-60 (94)
24 1cq0_A Protein (NEW hypothalam 31.9 13 0.00046 25.9 0.7 21 303-323 5-25 (28)
25 1i2t_A HYD protein; four alpha 30.4 22 0.00076 28.5 1.9 16 304-319 45-60 (61)
26 4e6s_A Zinc finger and SCAN do 26.6 43 0.0015 28.8 3.1 37 461-503 23-59 (93)
27 1ifw_A Polyadenylate-binding p 23.0 35 0.0012 29.5 1.9 19 304-322 66-84 (92)
28 3kuj_A Polyadenylate-binding p 22.6 36 0.0012 29.1 1.9 19 304-322 64-82 (88)
29 2dyd_A Poly(A)-binding protein 22.5 38 0.0013 28.9 2.0 17 304-320 66-82 (85)
30 1g9l_A Polyadenylate-binding p 22.0 38 0.0013 31.4 2.0 21 303-323 109-129 (144)
31 1y7q_A AW-1, zinc finger prote 21.4 62 0.0021 28.3 3.1 36 462-503 27-62 (98)
32 3ppm_A Fatty-acid amide hydrol 21.3 1.6E+02 0.0056 32.0 7.1 17 457-473 45-61 (573)
33 3lhr_A Zinc finger protein 24; 20.9 63 0.0022 27.7 3.0 38 460-503 22-59 (93)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.84 E-value=1.9e-21 Score=155.26 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 445 ~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
.||+++|+|||.||++||+||++||++|| +++.++|||||+||++||+||.+|+++|++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP-~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVP-CYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHcc-CCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999 888999999999999999999999999853
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.81 E-value=2.1e-20 Score=152.78 Aligned_cols=60 Identities=32% Similarity=0.458 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 442 rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
..++||.++|+|||.||++||+||++||.+|| ..+ ++|||||+||++||+||.+|+++|+
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP-~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTS-SNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcC-CCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999999 555 7899999999999999999999985
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=1e-18 Score=143.32 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15318 449 ANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQ 500 (566)
Q Consensus 449 aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~ 500 (566)
.+|+|||.||++||+||++||++|| .++.+||||||||||+||+||..|++
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP-~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVP-GVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCC-CCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999 88999999999999999999999974
No 4
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.72 E-value=4.4e-18 Score=141.66 Aligned_cols=67 Identities=66% Similarity=0.916 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCch
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNLNPK 510 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~nlnpk 510 (566)
.+||.++|+|||+|+.+||++|++||++||...+.+|++||++||+.||+||..|+++|+|.+++|.
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~ 69 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPL 69 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5799999999999999999999999999995567888889999999999999999999999988874
No 5
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.71 E-value=8.6e-18 Score=146.07 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERN 506 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~n 506 (566)
..|+++++.|||.||++||+||++||++|| +++.+||||||||||+||+||.+|+++|++..
T Consensus 23 i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP-~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 23 ISRSKTPVDDPMSLLYNMNDCYSKLKELVP-SIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCT-TSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHCC-CCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666678889999999999999999999 88999999999999999999999999998653
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.4e-13 Score=114.29 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 440 AMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 440 ~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
...+..+|...|++||.|+..||.+|++||.+|| .++. .|++|++||+.||+||..|++.+++
T Consensus 6 ~~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP-~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~ 68 (80)
T 1hlo_A 6 VESDADKRAHHNALERKRRDHIKDSFHSLRDSVP-SLQG-EKASRAQILDKATEYIQYMRRKNHT 68 (80)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSG-GGTT-SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCc-CCCC-CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999 5554 5699999999999999999988764
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.34 E-value=1.2e-12 Score=109.11 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 445 ~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
+||...|++||.|+..||++|++||.+|| .++ +.|++|++||+.||+||..|++.+.+
T Consensus 1 ~rR~~hn~~Er~RR~~in~~f~~Lr~lvP-~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 1 DKRAHHNALERKRRDHIKDSFHSLRDSVP-SLQ-GEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSG-GGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHhhhHHHHHHHHHHHHHHHHHHHCC-CCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999 544 45699999999999999999987754
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.34 E-value=2.2e-12 Score=109.65 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 443 EKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 443 ek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
..++|...|++||.|...||++|+.||.+|| .++.++|++|+.||+.||+||..|++..+
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP-~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIP-ELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCG-GGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999 77778899999999999999999998865
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.17 E-value=4.9e-11 Score=99.92 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 447 RQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 447 R~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
|...|+.||.|..+||..|..||.+|| .++.+.|+||+.||+.|++||..|++..+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP-~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVP-LGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSC-CCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999 77788899999999999999999988765
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.15 E-value=9.3e-11 Score=98.18 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 443 EKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 443 ek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
+..||...|..||.|...||+.|.+||.+|| ..+.|++|..||..||+||..|++.+..
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP---~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVV---GTEAKLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999 3468999999999999999999998864
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.00 E-value=3.4e-11 Score=96.08 Aligned_cols=57 Identities=32% Similarity=0.366 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHHHHHH
Q psy15318 444 KERRQANNVRERIRIRDINEALKELGRMCMAHLKT---DKPQTKLGILNMAVEVIMSLEQQ 501 (566)
Q Consensus 444 k~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~---dKklSKieiLr~Ai~YI~~L~~~ 501 (566)
..+|...|+.||.|...||++|++|+.+|| .... ..|++|..||+.||+||..|++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP-~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIP-DSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSC-CCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCc-CcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 346888999999999999999999999999 4333 24799999999999999999764
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.93 E-value=1.8e-09 Score=89.28 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 442 rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
+++.+|...|..||+|-..||+.|.+|+.+|| ..+.|+.|..||+.||+||..|++.+-
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP---~~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---SCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCC---CCCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999998 456799999999999999999998763
No 13
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.87 E-value=3.2e-09 Score=94.54 Aligned_cols=63 Identities=29% Similarity=0.410 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 441 MREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 441 ~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
.+++.+|...|.-||+|-..||+.|.+|+.+||.....+.|++|..||..||+||..|++++.
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 445668889999999999999999999999999544557899999999999999999988775
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.87 E-value=1.6e-09 Score=89.75 Aligned_cols=60 Identities=27% Similarity=0.317 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy15318 441 MREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQ 500 (566)
Q Consensus 441 ~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~ 500 (566)
++.+.||...|.-||+|-..||+.|++|+.+||.......|+.|..||+.||+||..|+.
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999999999999443456899999999999999999864
No 15
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.76 E-value=1.4e-09 Score=87.47 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 446 RRQANNVRERIRIRDINEALKELGRMCMAHLKT---DKPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 446 RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~---dKklSKieiLr~Ai~YI~~L~~~L 502 (566)
||..-|.=||.|...||.+|++|+.+||..... ..+++|.+||.+||+||..|++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 466778889999999999999999999933222 578999999999999999998765
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.23 E-value=1.1e-06 Score=88.40 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 441 MREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 441 ~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~L 502 (566)
++++.+|...|..||+|...||+.|.+|+.+|| ....||.|+.||++||.||..|..+-
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 346677888999999999999999999999999 34679999999999999999987654
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.93 E-value=5.4e-06 Score=84.50 Aligned_cols=58 Identities=28% Similarity=0.354 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15318 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLE 499 (566)
Q Consensus 442 rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~ 499 (566)
+++.+|...|.-||+|-..||+.|.+|+.+||..-....||.|+.||++||.||+.|.
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 4466788889999999999999999999999944345689999999999999999886
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.19 E-value=0.00052 Score=58.46 Aligned_cols=43 Identities=30% Similarity=0.391 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15318 460 DINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502 (566)
Q Consensus 460 ~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~L 502 (566)
+||.-++||..+||.....+-|..|=.||+.|++||..|++..
T Consensus 6 nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 6 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 5999999999999965567889999999999999999996643
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=89.08 E-value=0.55 Score=43.35 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15318 460 DINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLE 499 (566)
Q Consensus 460 ~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~ 499 (566)
.|+-.|.+|.+++|.|-..-.+|.|--||+.|.+++.+|-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 5888999999999988877788999999999999988873
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.17 E-value=73 Score=30.01 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy15318 432 DSEDPQTKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504 (566)
Q Consensus 432 ~d~~p~~k~~rek~RR~aaNaRER~Rmr~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre 504 (566)
.+++++|+.+.++.|.+....++.+| +.|-..-.+|+.++- .-+.| ..|| +..++=|..|++.|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr-~ql~akr~EL~aL~~-a~~~D--eakI---~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALR-QQLISKRYEYNALLT-ASSPD--TAKI---NAVAKEMESLGQKLDE 131 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT-SSSCC--HHHH---HHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CCCCC--HHHH---HHHHHHHHHHHHHHHH
Confidence 57899999999888888777777766 345555677877664 21222 2233 3334445556666553
No 21
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=46.78 E-value=3.4 Score=43.43 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCchhHhhhhh
Q psy15318 460 DINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNLNPKAACLRRR 517 (566)
Q Consensus 460 ~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lre~nlnpk~~clkrr 517 (566)
.|+-.|.+|.++||.|-..-.+|.|--||+.|..++.+|-.+= .|..-.|+||.
T Consensus 321 tIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy~~p----~~nqeiilkrA 374 (402)
T 3mlp_A 321 TIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMP----HNNQEIILKRA 374 (402)
T ss_dssp TTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHTTCC---------------
T ss_pred ccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhcCCC----CCcchhhcccc
Confidence 4777999999999988777788999999999999988873222 12233477664
No 22
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=32.68 E-value=32 Score=23.70 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy15318 481 PQTKLGILNMAVEVIMSLEQ 500 (566)
Q Consensus 481 klSKieiLr~Ai~YI~~L~~ 500 (566)
++.+|.+|-.|.+||...|+
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46689999999999987665
No 23
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=32.37 E-value=30 Score=30.11 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 462 NEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 462 N~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
-+|+.+||..|-..+.++.. ||-+||.+=| |||.|.
T Consensus 25 reaL~rLreLc~qWLrPe~h-TKEQIlElLV-----LEQFL~ 60 (94)
T 2fi2_A 25 QEALAQLRELCRQWLRPEVR-SKEQMLELLV-----LEQFLG 60 (94)
T ss_dssp HHHHHHHHHHHHHHHCTTTC-CHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccc-cHHHHHHHHH-----HHHHHH
Confidence 46999999999878888775 9999998654 555553
No 24
>1cq0_A Protein (NEW hypothalamic neuropeptide/orexin- B28); obesity, human HCRT-2/OX-B,neuropeptide, solution structure, de novo protein; NMR {Homo sapiens} SCOP: j.6.1.1
Probab=31.93 E-value=13 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.0
Q ss_pred chhhHhHHHHHHHHhhccccC
Q psy15318 303 EGMEECLDDAINVIRNHADGQ 323 (566)
Q Consensus 303 srmEdrLDdAIhVLRnHAvG~ 323 (566)
.++.+||-.-+|..||||.|-
T Consensus 5 ~~~q~RL~~LL~~s~n~AaGI 25 (28)
T 1cq0_A 5 PGLQGRLQRLLQASGNHAAGI 25 (28)
T ss_dssp SSHHHHHHHHHHHTTTSHHHH
T ss_pred hhhHHHHHHHHHhccccccce
Confidence 467889999999999999873
No 25
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=30.39 E-value=22 Score=28.49 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.0
Q ss_pred hhhHhHHHHHHHHhhc
Q psy15318 304 GMEECLDDAINVIRNH 319 (566)
Q Consensus 304 rmEdrLDdAIhVLRnH 319 (566)
-+.++.|||+.||+.|
T Consensus 45 ~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 45 SLRARVDEAMELIIAH 60 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4667999999999987
No 26
>4e6s_A Zinc finger and SCAN domain-containing protein 10; protein interaction, other scans, N-terminal PA finger transcription factor, transcription; 1.85A {Mus musculus}
Probab=26.61 E-value=43 Score=28.79 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 461 INEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 461 IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
=-+||.+||.+|-..+.+++ -||-+||-+-| |||.|.
T Consensus 23 Preal~~L~eLc~~WLrPe~-htKEQIleLLV-----LEQFL~ 59 (93)
T 4e6s_A 23 PRASLGRLRELCNHWLRPAL-HTKKQILELLV-----LEQFLS 59 (93)
T ss_dssp HHHHHHHHHHHHHHHHCTTT-CCHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccc-CCHHHHHHHHH-----HHHHHH
Confidence 34689999999977888877 99999998654 788876
No 27
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=23.01 E-value=35 Score=29.48 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=15.7
Q ss_pred hhhHhHHHHHHHHhhcccc
Q psy15318 304 GMEECLDDAINVIRNHADG 322 (566)
Q Consensus 304 rmEdrLDdAIhVLRnHAvG 322 (566)
-+..+.|||+.||++|...
T Consensus 66 ~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 66 LFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999753
No 28
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=22.58 E-value=36 Score=29.11 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.3
Q ss_pred hhhHhHHHHHHHHhhcccc
Q psy15318 304 GMEECLDDAINVIRNHADG 322 (566)
Q Consensus 304 rmEdrLDdAIhVLRnHAvG 322 (566)
-+..+.|||+.||+.|..-
T Consensus 64 ~L~~kV~EA~~vL~~~~~~ 82 (88)
T 3kuj_A 64 SLRSKVDEAVAVLQAHQAK 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556899999999999643
No 29
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=22.53 E-value=38 Score=28.85 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=14.7
Q ss_pred hhhHhHHHHHHHHhhcc
Q psy15318 304 GMEECLDDAINVIRNHA 320 (566)
Q Consensus 304 rmEdrLDdAIhVLRnHA 320 (566)
-+..+.||||.||++|.
T Consensus 66 ~L~~kv~EA~~vL~~~~ 82 (85)
T 2dyd_A 66 ALKAKVAEAMEVLRSAQ 82 (85)
T ss_dssp HHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46678999999999986
No 30
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=21.97 E-value=38 Score=31.43 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.2
Q ss_pred chhhHhHHHHHHHHhhccccC
Q psy15318 303 EGMEECLDDAINVIRNHADGQ 323 (566)
Q Consensus 303 srmEdrLDdAIhVLRnHAvG~ 323 (566)
+-+.+++||||.||+.|....
T Consensus 109 e~L~~kV~EA~~vL~~~~~~~ 129 (144)
T 1g9l_A 109 ESLRSKVDEAVAVLQAHQAKE 129 (144)
T ss_dssp THHHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 357789999999999998543
No 31
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=21.39 E-value=62 Score=28.30 Aligned_cols=36 Identities=36% Similarity=0.555 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 462 NEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 462 N~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
-+||.+||..|-..+.++. -||-+||.+=| |||.|.
T Consensus 27 reaL~rLreLC~qWLrPe~-hTKEQIlElLV-----LEQFL~ 62 (98)
T 1y7q_A 27 QEALSQLRQLCRQWLQPEL-HTKEQILELLV-----MEQFLT 62 (98)
T ss_dssp HHHHHHHHHHHHHHHCCSS-CCHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHCCccc-ccHHHHHHHHH-----HHHHHH
Confidence 3689999999987888877 89999998654 555554
No 32
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=21.28 E-value=1.6e+02 Score=32.02 Aligned_cols=17 Identities=6% Similarity=0.170 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy15318 457 RIRDINEALKELGRMCM 473 (566)
Q Consensus 457 Rmr~IN~AF~eLRr~~p 473 (566)
-++.+.+++++|+..+|
T Consensus 45 ~~~~~~~~~~~~~~~~~ 61 (573)
T 3ppm_A 45 SLETMDKAVQRFRLQNP 61 (573)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhccccCC
Confidence 36667777777776555
No 33
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=20.90 E-value=63 Score=27.70 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15318 460 DINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503 (566)
Q Consensus 460 ~IN~AF~eLRr~~p~~~~~dKklSKieiLr~Ai~YI~~L~~~Lr 503 (566)
.=-+||.+||.+|-..+.+++ -||-+||.+-+ |||.|.
T Consensus 22 gp~eal~~L~eLc~~WLrPe~-htKEQileLLV-----LEQFL~ 59 (93)
T 3lhr_A 22 GPREAVSQLRELCRLWLRPET-HTKEQILELVV-----LEQFVA 59 (93)
T ss_dssp SHHHHHHHHHHHHHHHHCTTT-SCHHHHHHHHH-----HHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCccc-CCHHHHHHHHH-----HHHHHH
Confidence 345789999999977888866 99999998654 677765
Done!