RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15318
(566 letters)
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain.
Length = 53
Score = 63.4 bits (155), Expect = 5e-13
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 451 NVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504
N RER R R INEA EL + K K +K IL +A+E I SL++++++
Sbjct: 1 NARERRRRRKINEAFDELRSLLPTLPKNKKL-SKAEILRLAIEYIKSLQEELQK 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA-
binding proteins that act as transcription factors;
60-100 amino acids long. A DNA-binding basic region is
followed by two alpha-helices separated by a variable
loop region; HLH forms homo- and heterodimers,
dimerization creates a parallel, left-handed, four helix
bundle; the basic region N-terminal to the first
amphipathic helix mediates high-affinity DNA-binding;
there are several groups of HLH proteins: those
(E12/E47) which bind specific hexanucleotide sequences
such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3),
those lacking the basic domain (Emc, Id) function as
negative regulators since they fail to bind DNA, those
(hairy, E(spl), deadpan) which repress transcription
although they can bind specific hexanucleotide sequences
such as N-box (5-CACGc/aG-3), those which have a COE
domain (Collier/Olf-1/EBF) which is involved in both in
dimerization and in DNA binding, and those which bind
pentanucleotides ACGTG or GCGTG and have a PAS domain
which allows the dimerization between PAS proteins, the
binding of small molecules (e.g., dioxin), and
interactions with non-PAS proteins.
Length = 60
Score = 61.1 bits (149), Expect = 4e-12
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 443 EKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502
K RR+A+N+RER R IN+A EL R + L K +K IL AV+ I SL++ +
Sbjct: 1 RKSRREAHNLRERRRRERINDAFDEL-RSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59
Query: 503 R 503
+
Sbjct: 60 Q 60
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain.
Length = 52
Score = 59.8 bits (146), Expect = 9e-12
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 446 RRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLE 499
RR+A+N RER R IN+A +EL R + K +K IL +A+E I L+
Sbjct: 1 RRKAHNERERRRRDRINDAFEEL-RELLPTPPNKK-LSKAEILRLAIEYIKHLQ 52
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 33.7 bits (78), Expect = 0.21
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 434 EDPQTKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVE 493
E+ + + E E R +ER ++ +I E ++E + + + + I E
Sbjct: 81 EEREKRRQEEYEERL----QEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDE-FNE 135
Query: 494 VIMSLEQQVRERN----------LNPKAACLRRREEEKAE 523
+ +++ +ER KA RE E+ E
Sbjct: 136 ERIERKEEEKEREREEELKILEYQREKAEREEEREAERRE 175
>gnl|CDD|221216 pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein
present in Mycobacterium and related actinomycetes. It
is a functional homologue of the H-NS-like proteins.
H-NS proteins play a role in nucleoid organisation and
also function as a pleiotropic regulator of gene
expression.
Length = 107
Score = 31.0 bits (71), Expect = 0.48
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 417 KGSKRSRRYCSSADEDSEDPQTKAMREKERRQANNVRERIRI-RDINEA 464
+ +R R +AD + A+RE R V +R RI ++ EA
Sbjct: 59 RRGRRRTRSRRAADR----EDSAAIREWARENGYQVSDRGRIPAEVVEA 103
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 32.7 bits (75), Expect = 0.50
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Query: 186 PPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSN 245
S P+++ GV S P S ++ P + P+ +S ++ S
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP--PSPESPTNPSPP 237
Query: 246 PSTPVSSPPPLSAQNSEWVSGPHASSPHFTSDHRGLHMSIPEQ 288
P PPP+ + P S T G +
Sbjct: 238 PGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280
Score = 30.0 bits (68), Expect = 2.9
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 6/98 (6%)
Query: 124 SPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITAS 183
+ P D + PS P P + S+ +
Sbjct: 170 NSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPE 229
Query: 184 PLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGP 221
NP+ G +P P P + T P P
Sbjct: 230 SPT------NPSPPPGPAAPPPPPVQQVPPLSTAKPTP 261
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 32.1 bits (73), Expect = 0.92
Identities = 43/261 (16%), Positives = 60/261 (22%), Gaps = 38/261 (14%)
Query: 34 SPDSPYFPFIMPPGRTVPPASIKRKRESIEPPENSDVDGAHG------------WYDEFG 81
S P PP P + S + G + G
Sbjct: 187 SSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSG 246
Query: 82 QASSPRFVSHKPNPSSIYTDPYYINNTGGGPGDPWAG----GGPIQSPSPYADYSSP--- 134
P P P+ I +G G + SP SSP
Sbjct: 247 CGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSG 306
Query: 135 ---PEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPMSTI 191
S+S+ S+ ST + G G S S P P S
Sbjct: 307 PAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366
Query: 192 RNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVS 251
+ P + SP+ + G A+A A + P
Sbjct: 367 KRPRPSRAPSSPA----------ASAGRPTRRRARAAVAG------RARRRDATGRFPAG 410
Query: 252 SPPPLSAQNSEWVSGPHASSP 272
P P +A P
Sbjct: 411 RPRPSPLDAGAASGAFYARYP 431
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 32.0 bits (74), Expect = 0.92
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 137 HAISTSNHLSQNLY-----PPSTLHLPPENMG--YMSPSGGPADSS 175
HAI N L PS H PPE+ G Y P+GGPAD+
Sbjct: 123 HAILKYNGRGGGLADGIVITPS--HNPPEDGGIKYNPPNGGPADTD 166
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 32.1 bits (72), Expect = 0.95
Identities = 29/131 (22%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 124 SPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITAS 183
SP + P + ST S + P T P + P+ S T S
Sbjct: 590 GSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEET--PSVPSTTHVSTLS 647
Query: 184 PLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYS 243
P P T + G S S YPG V P P T A + A + +S
Sbjct: 648 PGPGPGTTSQ-VSGPGNSSTSRYPGEVH--VTEGMPNPNATSPSAPSGQKTAVPTVTSTG 704
Query: 244 SNPSTPVSSPP 254
++
Sbjct: 705 GKANSTTKETS 715
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 430 DEDSEDPQTKAMREKERRQANNVRERIR 457
D+ EDP K REK+ R A N + ++
Sbjct: 134 DDPKEDPFAKKRREKKERVAKNEKRELK 161
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 31.5 bits (71), Expect = 1.5
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 418 GSKRSRRYCSSADEDSEDPQTKAMREKERRQANNV---RERIRIRDI----NEALKELGR 470
G R RR+C++A + P++ + + V R+++RI D+ +E L +G+
Sbjct: 49 GLPRRRRFCAAASASLQSPESAKVEAAKGAFGEAVGEFRKKLRIADVKGGEDEGLARVGK 108
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 31.1 bits (70), Expect = 2.0
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 134 PPEHAISTSNHLSQNLYPPSTLHLPP---ENMGYMSPSGGPADSSNISSITASPLPPMST 190
P + A + ++ +S+ P + L L P E P S ++ + SPLPP +T
Sbjct: 8 PEDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLPPNTT 67
Query: 191 IRNPAAAS-GVQSPSLYPGHNSPIVQTTGPGP 221
+ P + S G +S S N +T P P
Sbjct: 68 LDAPVSDSQGDESSSEQQPQNP---NSTEPAP 96
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 31.1 bits (71), Expect = 2.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 152 PSTLHLPPENMG--YMSPSGGPADS 174
PS H PPE+ G Y P GGPAD+
Sbjct: 127 PS--HNPPEDGGFKYNPPHGGPADT 149
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 30.4 bits (69), Expect = 3.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 137 HAISTSNHLSQNL-----YPPSTLHLPPENMG--YMSPSGGPADSSNISSITA 182
HAI T N + L PS H PPE+ G Y P+GGPA +I A
Sbjct: 101 HAILTHNGKYKALADGIVLTPS--HNPPEDGGIKYNPPNGGPAPEKVTDAIEA 151
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 30.5 bits (68), Expect = 3.1
Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 97 SIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLH 156
S Y PY++N T G+ + + ++ Y S +++ P
Sbjct: 1095 SPYALPYFMNQTSALVGNT----ALPKGLNVFSGYMFGAGTVASAFLYMNSTPQSPVLAL 1150
Query: 157 LPPENMGY----MSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSP 212
L + Y +S + I S+ P P + + P + Q P
Sbjct: 1151 LLAPYISYKFNALSLGFSITADAAIFSLFGIPAPQLLSSYIPTGSVLYQDPIFT------ 1204
Query: 213 IVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNS 261
PG G + A S+ SS P+ +PPP S+ +S
Sbjct: 1205 ---YIPPGIIGMSGTNTFTFKAAQLQLSAASSPPAATTPTPPPSSSSSS 1250
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain. It
has been suggested that this gene family be designated
tps (for terpene synthase). It has been split into six
subgroups on the basis of phylogeny, called tpsa-tpsf.
tpsa includes vetispiridiene synthase, 5-epi-
aristolochene synthase, and (+)-delta-cadinene synthase.
tpsb includes (-)-limonene synthase. tpsc includes
kaurene synthase A. tpsd includes taxadiene synthase,
pinene synthase, and myrcene synthase. tpse includes
kaurene synthase B. tpsf includes linalool synthase.
Length = 177
Score = 29.0 bits (66), Expect = 3.8
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 271 SPHFTSDHRGL-------HMSIPEQQRLDEAIGYLRSHTEGMEECLDDAINVIR--NHA 320
T+D +GL H+ + LDEA+ + H E + L N+ + HA
Sbjct: 118 KESLTNDVKGLLSLYEASHLRTHGEDILDEALSFTTKHLESLLSSLSSPDNLAKEVEHA 176
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.8 bits (67), Expect = 5.1
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 167 PSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVG 226
P + ++ A P PAAA+ + +P
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 227 K---ALASIYPADQSASSYSSNPSTPVSSPPPLSA 258
+ A ++ A Q+++ P +P A
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 29.8 bits (67), Expect = 5.2
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 397 ESICSDQMNSVTSPTNSTSNKGSKRSRRYCSSADEDSEDPQTKAMREKERRQANNVRERI 456
++I D + S T S+ G K+ R D++ P+ A+ E + +RE
Sbjct: 34 DAIAEDAKTASKSGTKSS--AGRKKRRERQDDGDDEPVSPKRIAIDEVKGMTVRELREAA 91
Query: 457 RIR--DINEALKEL-GRMCMAHLKTDKPQTKLG 486
R K+L R+C A K + G
Sbjct: 92 SERGLATTGRKKDLLERLCAALESDVKVGSANG 124
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 29.4 bits (66), Expect = 5.4
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 119 GGPIQSPSPYADYSSPPEHAISTSNHLS-QNLYPPS-TLHL 157
G + Y DYSS H + N+ PPS TLHL
Sbjct: 359 GQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399
>gnl|CDD|227007 COG4660, RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit
RnfE [Energy production and conversion].
Length = 212
Score = 28.9 bits (65), Expect = 5.7
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 10 NGAADMDNGMSYSNSYANNNTDSFSPDSPYFPFIMPPG 47
NG + + + + F DSP+ I+PPG
Sbjct: 154 NGTLFDGADLLFGSWAKVLRIEIFHTDSPFLLAILPPG 191
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs
to the AAA class of chaperone-like ATPases. The core of
the 380 kDa motor unit contains a concatenated chain of
six AAA modules, of which four correspond to the ATP
binding sites with P-loop signatures described
previously, and two are modules in which the P loop has
been lost in evolution. This C-terminal domain carries
the D6 region of the dynein motor where the P-loop has
been lost in evolution but the general structure of a
potential ATP binding site appears to be retained.
Length = 706
Score = 29.6 bits (67), Expect = 6.0
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 18/66 (27%)
Query: 23 NSYANN--NTDSFSPDSPYFPFIMPPGRTVPPASIKRKRESIEPPENSDVDGAHGWYDEF 80
+Y F P+ P P +D +G + +E
Sbjct: 343 RTYLEEFFTPRLFDPELELAPGD----------------LGFAVPPGTDYEGYLQYIEEL 386
Query: 81 GQASSP 86
SSP
Sbjct: 387 PPESSP 392
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 29.5 bits (66), Expect = 6.7
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 117 AGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSN 176
G QSP+P + S P + +S + PP ++ ++ P D +
Sbjct: 15 TSSGEEQSPNPSSHKSKPSSRKLKSSKE-----------NAPPPDLNSLTSDLKP-DHRS 62
Query: 177 ISSITASPLPPMSTIRNP 194
S+ SPLPP NP
Sbjct: 63 ASAKLKSPLPPRPPSSNP 80
>gnl|CDD|198456 cd10466, FimH_man-bind, Mannose binding domain of FimH and related
proteins. This family, restricted to
gammaproteobacteria, includes FimH, a mannose-specific
adhesin of uropathogenic Escherichia coli strains. The
domain appears to bind specifically to D-mannose and
mediates cellular adhesion to mannosylated proteins, a
prerequisite to colonization and subsequent invasion of
epithelial tissues.
Length = 160
Score = 28.1 bits (63), Expect = 7.6
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 143 NHLSQNLYPPSTLH----LPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAAS 198
N L + + L+ L Y P SS T PLP + +AA
Sbjct: 57 NLLRGSGFGGPLLNFSGSLDFYGSTYPFPLQSDTKVIVYSSGTWKPLPLKLYLTPVSAAG 116
Query: 199 GVQSPS 204
GV +
Sbjct: 117 GVVIKA 122
>gnl|CDD|132262 TIGR03218, catechol_dmpH, 4-oxalocrotonate decarboxylase. Members
of this protein family are 4-oxalocrotonate
decarboxylase. Note that this protein, as characterized
(indirectly) in Pseudomonas sp. strain CF600, was
inactive except when coexpressed with DmpE,
2-oxopent-4-enoate hydratase, a homologous protein from
the same operon. Both of these enzymes are active in the
degradation of catechol, a common intermediate in the
degradation of aromatic compounds such as benzoate,
toluene, phenol, dimethylphenol (dmp), salicylate, etc
[Energy metabolism, Other].
Length = 263
Score = 28.6 bits (64), Expect = 7.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 514 LRRREEEKAEDSVGPKLGHHLSAVSQHMGIQPPSF 548
+RRR+E + VG K G A + MG++ P F
Sbjct: 49 IRRRKEARGAKIVGLKAGLTSWAKMKQMGVETPVF 83
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.3 bits (65), Expect = 7.9
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 420 KRSRRYCSSADEDSEDPQTKAMREK----ERRQANNVRERIRIRDINEALKELGRMCMAH 475
+ A+E + + K EK E ++A +++ + EA K MA
Sbjct: 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
Query: 476 LKTD------KPQTKLGILNMAVEVIMSLEQQVRERNLNPKAACLRRREEEK 521
K + + + + + E M E+ + KA L++ EEEK
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 29.2 bits (66), Expect = 8.3
Identities = 19/150 (12%), Positives = 35/150 (23%), Gaps = 2/150 (1%)
Query: 108 TGGGPGDPWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYP--PSTLHLPPENMGYM 165
P + A P + + A + P+ P
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691
Query: 166 SPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTV 225
+P+G + P + + + P + P+ P
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751
Query: 226 GKALASIYPADQSASSYSSNPSTPVSSPPP 255
A A P A + + + P S P
Sbjct: 752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.127 0.377
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,645,261
Number of extensions: 2741945
Number of successful extensions: 2437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2364
Number of HSP's successfully gapped: 107
Length of query: 566
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 464
Effective length of database: 6,413,494
Effective search space: 2975861216
Effective search space used: 2975861216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (27.6 bits)