RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15318
(566 letters)
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 111 bits (279), Expect = 6e-30
Identities = 44/69 (63%), Positives = 51/69 (73%)
Query: 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504
++R +N ER R RDINEA +ELGRMC HLK+DK QTKL IL AV+VI+ LEQQVRE
Sbjct: 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE 63
Query: 505 RNLNPKAAC 513
RNLNP
Sbjct: 64 RNLNPLNHH 72
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA
complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1
PDB: 1mdy_B*
Length = 68
Score = 54.7 bits (132), Expect = 5e-10
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 439 KAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSL 498
+ +RR+A +RER R+ +NEA + L + + + K+ IL A+ I L
Sbjct: 5 RKTTNADRRKAATMRERRRLSKVNEAFETL-KRSTSSNPNQRL-PKVEILRNAIRYIEGL 62
Query: 499 EQQVRE 504
+ +R+
Sbjct: 63 QALLRD 68
>2ql2_B Neurod1, neurogenic differentiation factor 1;
basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Length = 60
Score = 53.0 bits (128), Expect = 2e-09
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 446 RRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVR 503
RR N RER R+ +N AL L R + + +K+ L +A I +L + +R
Sbjct: 2 RRMKANARERNRMHGLNAALDNL-RKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double
helix, overhanging base, transcription/DNA complex; HET:
DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 46.2 bits (110), Expect = 4e-07
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 443 EKERRQANNVRERIRIRD-INEALKELGRM---CMAHLKTDKPQTKLGILNMAVEVIMSL 498
+++RR +N ER R RD IN + +L ++ Q+K GIL+ A + I L
Sbjct: 2 DEKRRAQHNEVERRR-RDKINNWIVQLSKIIPDSSMESTKSG-QSKGGILSKASDYIQEL 59
Query: 499 EQQV 502
Q
Sbjct: 60 RQSN 63
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 47.8 bits (113), Expect = 2e-06
Identities = 14/106 (13%), Positives = 39/106 (36%), Gaps = 33/106 (31%)
Query: 427 SSADEDSEDPQTKAMRE-KERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKL 485
+ AD +++P+ ++R+ +E + R+R++ D + E + +
Sbjct: 75 AQADRLTQEPE--SIRKWREEQ-----RKRLQELDAASKVME------QEWREKAKK--- 118
Query: 486 GILNMAVEVIMSLEQQVRERNLNPKAACLRRREEEKA-----EDSV 526
LE+ + ++ + + R +KA + +
Sbjct: 119 -----------DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 44.3 bits (105), Expect = 3e-06
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQ 501
E+R A+N E+ IN+ + EL + + T+ K +L A++ I L+
Sbjct: 2 SRGEKRTAHNAIEKRYRSSINDKIIELKDL---VVGTEAKLNKSAVLRKAIDYIRFLQHS 58
Query: 502 VRERNLNPKAACLRRREEE 520
++ L + LR +
Sbjct: 59 NQK--LKQENLSLRTAVHK 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 44.3 bits (105), Expect = 4e-06
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504
++R +N ER R I ++ L R + L+ +K ++ IL+ A E I + + +
Sbjct: 1 DKRAHHNALERKRRDHIKDSFHSL-RDSVPSLQGEK-ASRAQILDKATEYIQYMRR--KN 56
Query: 505 RNLNPKAACLRRREEE 520
L+R+
Sbjct: 57 HTHQQDIDDLKRQNAL 72
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA
binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 44.2 bits (105), Expect = 4e-06
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 437 QTKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIM 496
+ + ++R +N ER R I ++ L R + L+ +K ++ IL+ A E I
Sbjct: 3 DIEVESDADKRAHHNALERKRRDHIKDSFHSL-RDSVPSLQGEKA-SRAQILDKATEYIQ 60
Query: 497 SLEQQVRERNLNPKAACLRRR 517
+ ++ L+R+
Sbjct: 61 YMRRK--NHTHQQDIDDLKRQ 79
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 48.9 bits (116), Expect = 4e-06
Identities = 39/206 (18%), Positives = 63/206 (30%), Gaps = 19/206 (9%)
Query: 93 PNPSSIYTDPYYINNTGGGPGDPWAGGG--PIQSPSPYADYSSPPEHAISTSNHLSQNLY 150
P S D ++ + P GG + Y + + S +
Sbjct: 1485 PYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFS 1544
Query: 151 PPSTLHLPPENMGY--MSPSGGPADSSNISSITASPLPPMSTIRNPA--AASGVQSPSLY 206
+ + Y SP + + SS + SP P + +P+ S SP+
Sbjct: 1545 SAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1602
Query: 207 PGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPP-----PLSAQNS 261
SP T P T S S +S S +P++P SP P S S
Sbjct: 1603 ----SPSYSATSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 262 EWVSGPHASSPHFTSDHRGLHMSIPE 287
+SP ++ + P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPS 1682
Score = 40.8 bits (95), Expect = 0.001
Identities = 37/184 (20%), Positives = 54/184 (29%), Gaps = 19/184 (10%)
Query: 100 TDPYYINNTGGGPGDPWAGGGPIQSPSPYAD---YSSPPEHAISTSNHLSQNLYPPSTLH 156
T + +G G G G SP D SP A S +
Sbjct: 1463 TAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDY 1522
Query: 157 LPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQT 216
P +S SS + S +P++ SP+ P +SP
Sbjct: 1523 GLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMP--SSPSYSP 1580
Query: 217 TGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPP-----PLSAQNSEWVSGPHASS 271
T P S S +S S +P++P S P S S +S
Sbjct: 1581 TSPS---------YSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631
Query: 272 PHFT 275
P ++
Sbjct: 1632 PSYS 1635
Score = 40.1 bits (93), Expect = 0.002
Identities = 49/262 (18%), Positives = 79/262 (30%), Gaps = 22/262 (8%)
Query: 28 NNTDSFSPDSPYFPFIMPPGRTVPPASIKRKRESIEPPENSDVDGAHGWYDEFGQASSPR 87
N + M + A +R + A + S R
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGR 1516
Query: 88 FVSHKPNPSSIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYADYSSPPEHAISTS----- 142
+ PY + G + P + + S P ++ S +
Sbjct: 1517 EGFGDYGLLGAAS-PYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSS 1575
Query: 143 ---NHLSQNLYPPSTLHLP------PENMGYMSPSGGPADSSNISSITASPLPPMSTIRN 193
+ S + P S + P P + Y + S + +S S T+ P S +
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYS 1635
Query: 194 PAAAS-GVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSS 252
P + S SPS P SP T P T S S +S S +P++P S
Sbjct: 1636 PTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 253 P--PPLSAQNSEWVSGPHASSP 272
P P S + + + SP
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSP 1713
Score = 38.1 bits (88), Expect = 0.009
Identities = 50/245 (20%), Positives = 79/245 (32%), Gaps = 21/245 (8%)
Query: 18 GMSYSNSYANNNTDSFSPDSPYFPFIMPPGRTVPPASIKRKRESIEPPENSDVDGAHGWY 77
S + + + PG T P +S + P S +
Sbjct: 1509 VQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTS 1568
Query: 78 DEFGQAS------SPRF--VSHKPNPSSIYTDPYYINNTGGGPGDPWAGGGPIQSP-SPY 128
+ +S SP + S +P+S P + + P ++ P SP SP
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPS--YSPTSPSYSPTSPS 1626
Query: 129 ADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPM 188
+SP S S + Y P++ P + Y S + +S S T+ P
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Query: 189 STIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPST 248
S +P + S S SP T P T S +S S +P++
Sbjct: 1687 SPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPS---------YSPTSPSYSPTS 1736
Query: 249 PVSSP 253
P SP
Sbjct: 1737 PSYSP 1741
Score = 30.8 bits (69), Expect = 1.8
Identities = 47/209 (22%), Positives = 70/209 (33%), Gaps = 23/209 (11%)
Query: 20 SYS-NSYANNNTDSFSPDSPYF----PFIMPP----GRTVPPASIKRKRESIEPPENSDV 70
SYS +S + + ++ P SP + P P T P S S P S
Sbjct: 1557 SYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPT 1616
Query: 71 DGAHGWYDEFGQASSPRFVSHKPNPSSIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYAD 130
++ +SP + +PS T P Y + P + Y+
Sbjct: 1617 SPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSP 1671
Query: 131 YSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPMST 190
+SP S S + Y P++ P + Y S + +S S T+ P S
Sbjct: 1672 -TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Query: 191 IRNPAAASGVQSPSLYPGHNSPIVQTTGP 219
+P SPS P SP T P
Sbjct: 1731 SYSPT------SPSYSP--TSPSYSPTSP 1751
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 4e-06
Identities = 53/431 (12%), Positives = 121/431 (28%), Gaps = 141/431 (32%)
Query: 225 VGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHASSPHFTSDHRGLHMS 284
V + L Y S P ++ E + + F ++S
Sbjct: 83 VEEVLRINYKFLMSPIKTEQR------QPSMMTRMYIEQRDRLYNDNQVFAK----YNVS 132
Query: 285 IPEQ-QRLDEAIGYLRSHT----EGM----EECLDDAINVIRNHA-----DGQ---LNLP 327
+ +L +A+ LR +G+ + + A++V ++ D + LNL
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNL- 189
Query: 328 GLSHPSPGGSL-----LYHQHLGNSHAVSSTVGAIPAGYLAGLASSSDTDGHIKIENIAN 382
+ SP L L +Q N + S I ++ +
Sbjct: 190 KNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---------LRIHSIQAELRRLLK 239
Query: 383 SSKKRKELTI--DTKTESI-------CSDQMNSVTSPTNSTSNKGSKRSRRYCSSADEDS 433
S L + + + C ++ +T+ ++ S + + S
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSC--KI-LLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 434 --EDPQTKAM--------REKERRQANNV------------RERI----RIRDIN-EALK 466
+ K++ + R+ R+ + + +N + L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 467 ELGRMCMAHLKTDK-----------------PQTKLGIL--NMAVEVIMSLEQQVRERNL 507
+ + L+ + P L ++ ++ +M + ++ + +L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 508 ---NPKAAC---------LRRREEEKAE-----------------DSVGPK--------- 529
PK + L+ + E + D + P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 530 LGHHLSAVSQH 540
+GHHL +
Sbjct: 477 IGHHLKNIEHP 487
Score = 40.2 bits (93), Expect = 0.002
Identities = 35/225 (15%), Positives = 61/225 (27%), Gaps = 39/225 (17%)
Query: 361 YLAGLASSSDTDGHIKIENIANSSKKRKELTIDTKTESICSDQMNSV--------TSPTN 412
+ S + D HI + A S R T+ +K E + + V SP
Sbjct: 41 MPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 413 STSNKGSKRSRRYCSSADEDSEDPQTKAMREKERRQANNVRERIRIRDINEALKELGRMC 472
+ + S +R Y D D Q A R Q + +AL EL
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--------PYLKLRQALLEL---- 147
Query: 473 MAHLKTDKPQTKLGILNMA-----VEVIMSLEQQVRERNLNPKAACLRRREEEKAEDSVG 527
+P + I + + + ++ K L + E +
Sbjct: 148 -------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 528 P--KLGHHLSAVSQHMGIQPPSFPSMAPNAQG----LMPQHDGPQ 566
KL + + + + Q L+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 42.7 bits (101), Expect = 2e-05
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 443 EKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502
+R+ +NV ER R ++ + L R + L+ ++ K+ IL A I+S++ +
Sbjct: 3 MNVKRRTHNVLERQRRNELKRSFFAL-RDQIPELENNEKAPKVVILKKATAYILSVQAE- 60
Query: 503 RERNLNPKAACLRRREEE 520
E+ L + LR+R E+
Sbjct: 61 -EQKLISEEDLLRKRREQ 77
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 45.1 bits (106), Expect = 6e-05
Identities = 36/185 (19%), Positives = 55/185 (29%), Gaps = 12/185 (6%)
Query: 97 SIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLH 156
+ D + G +PY++ S + + L P
Sbjct: 1442 DVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELM--FSPLVDSG 1499
Query: 157 LPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSP-SLYPGHNSPIVQ 215
G + GG S A P S +S SP S SP
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSP--GFGVSSPGFSPTSPTYSPTSPAYS 1557
Query: 216 TTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPP-----PLSAQNSEWVSGPHAS 270
T P T + + P+ S +S S +P++P SP P S S +
Sbjct: 1558 PTSPSYSPTSP-SYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1615
Query: 271 SPHFT 275
SP ++
Sbjct: 1616 SPSYS 1620
Score = 43.9 bits (103), Expect = 1e-04
Identities = 34/232 (14%), Positives = 65/232 (28%), Gaps = 33/232 (14%)
Query: 55 IKRKRESIEPPENSDVDGAHGWYDEFGQASSPRFVSHKPNPSSIYTDPYYINNTGGGPGD 114
+ + + + ++++ S + + P + +
Sbjct: 1447 EESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAG 1506
Query: 115 PWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADS 174
+ G + + + E S +S + P++ SP+ P
Sbjct: 1507 GFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTS-----PTYSPTSPAYSPTSP 1561
Query: 175 SNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYP 234
S SP P + + S SP SP T P S
Sbjct: 1562 SY------SPTSP-----SYSPTSPSYSP------TSPSYSPTSPSY---------SPTS 1595
Query: 235 ADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHASSPHFTSDHRGLHMSIP 286
S +S S +P++P SP S S +SP ++ + P
Sbjct: 1596 PSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Score = 43.2 bits (101), Expect = 2e-04
Identities = 56/280 (20%), Positives = 90/280 (32%), Gaps = 20/280 (7%)
Query: 8 KYNGAADMDNGMSYSNSYANNNTDSFSPDSPYFPFIMPPGRTVPPASIKRKRESIEPPEN 67
K D +G Y+N + + + P
Sbjct: 1458 KITEIEDGQDGGV--TPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMA--GGFTAYGG 1513
Query: 68 SDVDGAHGWYDEFGQA-SSPRFVSHKPN--PSSIYTDP----YYINNTGGGPGDP-WAGG 119
+D A + +G+A +SP F P P+S P Y + P P ++
Sbjct: 1514 ADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPT 1573
Query: 120 GPIQSP-SPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNIS 178
P SP SP +SP S S + Y P++ P + Y S + +S
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1633
Query: 179 SITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPG-----PGDTVGKALASIY 233
S T+ P S +P + S + Y SP T P P + S
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1692
Query: 234 PADQSASSYSSNPSTPVSSP-PPLSAQNSEWVSGPHASSP 272
+ S +S S +P++P SP P + + +
Sbjct: 1693 SPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 37.5 bits (87), Expect = 8e-04
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 447 RQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE-- 504
R +N E+ R + +L++L + + T L +L A I LE R+
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKL-KGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60
Query: 505 ---RNLNPKAACLRRREEE 520
L + L+R+ E+
Sbjct: 61 HQIDQLQREQRHLKRQLEK 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.002
Identities = 62/367 (16%), Positives = 103/367 (28%), Gaps = 110/367 (29%)
Query: 118 GG-GPIQSP-----SPYADYSSPPEHAISTSNHLSQNLY--PPSTLHLPPENMGYMS--- 166
GG G Y Y I S L + + + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 167 -PSGGPADSSNISSITAS-PLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQ-TTGPGPGD 223
PS P D + SI S PL + + + + + PG ++ TG G
Sbjct: 221 NPSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATGHSQGL 277
Query: 224 TVGKALA------SIYPADQSASSYS------SNPSTPVSSPPPLSAQNSEWVSGPHASS 271
A+A S + + + A + + P +S PP ++S S
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPS 336
Query: 272 PHFTSDHRGLHM-SI--PEQQRLDEAIGYLRSHTEGMEECLDDAINV-IRNHADGQLNLP 327
P M SI Q+++ + + SH + + + N A L +
Sbjct: 337 P----------MLSISNLTQEQVQDYVNKTNSHLPA-----GKQVEISLVNGAK-NLVVS 380
Query: 328 GLSHPSPGGSLLYH--QHLGNSHAVSST--------------------VGAIP--AGYLA 363
G P S LY L + A S V + P + L
Sbjct: 381 G--PPQ---S-LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLV 433
Query: 364 GLASSSDTD---GHIKIENIANSSKKRKELTI---DTKT------------ESICSDQMN 405
+ + D ++ K++ I DT E I D +
Sbjct: 434 PASDLINKDLVKNNVSF--------NAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCI- 483
Query: 406 SVTSPTN 412
+ P
Sbjct: 484 -IRLPVK 489
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 38.9 bits (90), Expect = 0.004
Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 12/151 (7%)
Query: 119 GGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNIS 178
+ S + +SP PS P G SP + S +S
Sbjct: 12 DDKMFSTQVNSSLTSPTGRGSM---------AAPS--LHPSLGPGIGSPGQLHSPISTLS 60
Query: 179 SITASPLPPMSTIRNPAAASGVQSP-SLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQ 237
S PP S I +P + P + G ++ Q + P + + + +
Sbjct: 61 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 238 SASSYSSNPSTPVSSPPPLSAQNSEWVSGPH 268
+ S + A + SG H
Sbjct: 121 VLKVPAHPSGNMASFTKHICAICGDRSSGKH 151
Score = 34.7 bits (79), Expect = 0.077
Identities = 24/161 (14%), Positives = 45/161 (27%), Gaps = 17/161 (10%)
Query: 142 SNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQ 201
++H ++ + N SP+G S S P + P S Q
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRG------SMAAPSLHPSLG----PGIGSPGQ 51
Query: 202 SPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNS 261
S +SPI P + + + + + + +P S P +S
Sbjct: 52 LHSPISTLSSPINGMGPPFS--VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSS 109
Query: 262 EWVSGPHASSPHFTSDHRGLHMSIPEQQRL-----DEAIGY 297
E + P + + + D + G
Sbjct: 110 EDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 150
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4);
transcription factor, basic helix loop helix; HET: DNA;
2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Length = 63
Score = 32.9 bits (75), Expect = 0.021
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 446 RRQANNVRERIRIRDINEALKELGRM---CMAHLKTDKPQTKLGILNMAVEVIMSLEQQV 502
+R+++ E+ R + AL EL + +K + A I L+Q
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism,
lectin-like beta sandwich, jelly roll, toxin; 2.20A
{Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 633
Score = 34.1 bits (77), Expect = 0.12
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 12/194 (6%)
Query: 93 PNPSSIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPP 152
+ +++Y T W P Y+ + + +S + ++ P
Sbjct: 270 SSGANLYASGSGPQQTQSFTAQNW--------PFLYSLFQVNSNYILSGISGTRLSITFP 321
Query: 153 STLHLPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSP 212
+ LP + S S +SS + + + S V P P S
Sbjct: 322 NIGGLPGSTTTHSLNSARVNYSGGVSSGLIG----ATNLNHNFNCSTVLPPLSTPFVRSW 377
Query: 213 IVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHASSP 272
+ T T + S + + + P +N V +
Sbjct: 378 LDSGTDREGVATSTNWQTESFQTTLSLRCGAFSARGNSNYFPDYFIRNISGVPLVIRNED 437
Query: 273 HFTSDHRGLHMSIP 286
H +I
Sbjct: 438 LTRPLHYNQIRNIE 451
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 32.9 bits (74), Expect = 0.39
Identities = 15/166 (9%), Positives = 32/166 (19%), Gaps = 2/166 (1%)
Query: 115 PWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADS 174
G +P PP+ + Q PP +++P+
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 175 SNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGPGDTVGKALASIYP 234
+ + + M P P +Q ++
Sbjct: 72 QIDQA--TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Query: 235 ADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHASSPHFTSDHRG 280
+ + PPP++
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175
Score = 30.6 bits (68), Expect = 1.9
Identities = 27/187 (14%), Positives = 43/187 (22%), Gaps = 22/187 (11%)
Query: 82 QASSPRFVSHKPNPSSIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYADYSSPPEHAIST 141
Q +P DP + G G P P +
Sbjct: 15 QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMP-----PQGAVPSMGQQQFLTPAQEQL 69
Query: 142 SNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQ 201
+ Q + +HL + + P P+ + P AA
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP-------VQMGTPLQQQQQPMAAPAYG 122
Query: 202 SPSLYPGHNSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNS 261
PS G N + P + + + P P+ PP S
Sbjct: 123 QPSAAMGQNMRPMNQLYP----------IDLLTELPPPITDLTLPPPPLVIPPERMLVPS 172
Query: 262 EWVSGPH 268
E +
Sbjct: 173 ELSNASP 179
Score = 28.6 bits (63), Expect = 6.2
Identities = 20/201 (9%), Positives = 40/201 (19%), Gaps = 13/201 (6%)
Query: 159 PENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTG 218
+ Y ++ A +PP + + P + Q
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Query: 219 PGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHASSPHFTSDH 278
P + + + P + Q +
Sbjct: 64 PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Query: 279 RGLHMSIPEQQRLDEAIGYLRSHTEGMEECLDDAINVIRNHADGQLNLPGLSHPSPGGSL 338
M + +D + D L P L P +
Sbjct: 124 PSAAMGQNMRP-------------MNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLV 170
Query: 339 LYHQHLGNSHAVSSTVGAIPA 359
+ + ST+ A+P
Sbjct: 171 PSELSNASPDYIRSTLNAVPK 191
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 32.4 bits (73), Expect = 0.43
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 151 PPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGHN 210
S L +M S S A S ++++ P P A + P G +
Sbjct: 10 HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69
Query: 211 SPIVQTTGP-GPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPL 256
GP GPG T A A Y + +S P + P L
Sbjct: 70 VLQRILRGPTGPG-TTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115
Score = 30.5 bits (68), Expect = 1.5
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 1/102 (0%)
Query: 120 GPIQSPSPYADYSSPPEHAISTSNHLSQNLYPPSTLHLPPENMGYMSPSGGPADSSNISS 179
+ P S ++ L+PP T+ P +G P D+ S
Sbjct: 10 HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69
Query: 180 ITASPLPPMSTIRNPAAASGVQSPSLYPGHNSPIVQTTGPGP 221
+ T + + PG +P G
Sbjct: 70 -VLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics,
PSI-2, protein ST initiative; NMR {Agrobacterium
tumefaciens str}
Length = 112
Score = 30.5 bits (69), Expect = 0.46
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 427 SSADEDSEDPQTKA--MREKERRQANNVRERIRIRDINEALK 466
+ + D + +A E + +R I+ AL
Sbjct: 33 DFEEPRNPDDEDRASERSNDEVLDELGQVGQDELRAIDAALA 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.0
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 14/41 (34%)
Query: 516 RREEEKAEDSVGPKLGHHLSAVSQHMGIQPPSFPSMAPNAQ 556
++ +K + S+ KL S P++A A
Sbjct: 19 KQALKKLQASL--KL------------YADDSAPALAIKAT 45
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus
thuringiensis} PDB: 3eb7_A
Length = 589
Score = 29.0 bits (64), Expect = 5.5
Identities = 22/204 (10%), Positives = 46/204 (22%), Gaps = 12/204 (5%)
Query: 90 SHKPNPSSIYTDPYYINNTGGGPGDPWAGGGPIQSPSPYADYSSPPEHAISTSNHLSQNL 149
+ +YTDP G D ++S + H L ++
Sbjct: 234 TKAQLTREVYTDPIGAIGAQGSWYDSAPSFNTLES-----TFIRGK-HLFDFITRL--SI 285
Query: 150 YPPSTLHLPPENMGYMSPSGGPADSSNISSITASPLPPMSTIRNPAAASGVQSPSLYPGH 209
Y + + G S I + ++ + A +
Sbjct: 286 YTGRSSFSASNYLKKW--IGHQISSQPIGGSIQTQTYGTTSGSSVIATQQIGFTGFDVYK 343
Query: 210 NSPIVQTTGPGPGDTVGKALASIYPADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHA 269
G + ++ P S ++SE P
Sbjct: 344 TLSTAGVLFAYTSKYYGVSKVVFDAIYPDNKYKTTFTYNPGSEGIGAQEKDSEVELPPET 403
Query: 270 SS--PHFTSDHRGLHMSIPEQQRL 291
+ HR +++ +
Sbjct: 404 LDQPNYEAYSHRLNYVTFIRNPDV 427
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 28.6 bits (64), Expect = 6.4
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 24/156 (15%)
Query: 426 CSSADEDSEDPQTKAMREKERRQANNVRERIRIRDINEALKELGRM---------CMAHL 476
CS + SE+ R++ +R +IR A+ ++ R+ + L
Sbjct: 372 CSDDELGSEEDGFDGATAAARKEV--IRNKIR------AIGKMARVFSVLREESESVLTL 423
Query: 477 KTDKPQTKL--GILNMAVEVIMSLEQQVRERNLNPKAACLRRR----EEEKAEDSVGPKL 530
K P L G+L+ + + S + E + K + + EE K D + ++
Sbjct: 424 KGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAKGLDRINERM 483
Query: 531 GHHLSAVSQHMGIQP-PSFPSMAPNAQGLMPQHDGP 565
A+ + + N +
Sbjct: 484 PPRRDAMPSDANLNSINKALTSETNGTDSNGSNSSN 519
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.377
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,582,361
Number of extensions: 515206
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 50
Length of query: 566
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 467
Effective length of database: 3,937,614
Effective search space: 1838865738
Effective search space used: 1838865738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.4 bits)