RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15318
(566 letters)
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 66.4 bits (162), Expect = 2e-14
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQ 501
+RR+A +RER R+ +NEA + L R ++ ++ K+ IL A+ I L+
Sbjct: 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSN--PNQRLPKVEILRNAIRYIEGLQAL 65
Query: 502 VRE 504
+R+
Sbjct: 66 LRD 68
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 66.1 bits (161), Expect = 3e-14
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 447 RQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE-- 504
R +N E+ R + +L++L + + + T L +L A I LE R+
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAV 60
Query: 505 ---RNLNPKAACLRRREEE 520
L + L+R+ E+
Sbjct: 61 HQIDQLQREQRHLKRQLEK 79
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 63.3 bits (154), Expect = 1e-13
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 443 EKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQ--TKLGILNMAVEVIMSLEQ 500
+++RR +N ER R IN + +L ++ +K GIL+ A + I L Q
Sbjct: 2 DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61
Query: 501 Q 501
Sbjct: 62 S 62
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 62.2 bits (151), Expect = 7e-13
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 445 ERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRE 504
++R +N ER R I ++ L R + L+ +K ++ IL+ A E I + ++
Sbjct: 1 DKRAHHNALERKRRDHIKDSFHSL-RDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHT 58
Query: 505 RNLNPKAACLRRREEE 520
L+R+
Sbjct: 59 --HQQDIDDLKRQNAL 72
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 59.1 bits (143), Expect = 4e-12
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 446 RRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLG---ILNMAVEVIMSLEQQV 502
+R+++ E+ R + AL EL + A K + A I L+Q
Sbjct: 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 59.6 bits (144), Expect = 5e-12
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 442 REKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQ 501
E+R A+N E+ IN+ + EL + + + K +L A++ I L+
Sbjct: 2 SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT---EAKLNKSAVLRKAIDYIRFLQHS 58
Query: 502 VRERNLNPKAACLRRREEE 520
++ L + LR +
Sbjct: 59 NQK--LKQENLSLRTAVHK 75
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 58.0 bits (140), Expect = 3e-11
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 446 RRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRER 505
+R+ +NV ER R ++ + L R + L+ ++ K+ IL A I+S++ + ++
Sbjct: 6 KRRTHNVLERQRRNELKRSFFAL-RDQIPELENNEKAPKVVILKKATAYILSVQAEEQK- 63
Query: 506 NLNPKAACLRRREEE 520
L + LR+R E+
Sbjct: 64 -LISEEDLLRKRREQ 77
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 30.9 bits (70), Expect = 0.041
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 453 RERIRIRDINEALKELGRMCMAHLKTDKPQTKLGILNMAVEVIMSLEQQVRERNLNPKAA 512
R I N+ + EL + M D K G+L A++ I L+Q + L +
Sbjct: 1 RSSI-----NDKIIELKDLVMGT---DAKMHKSGVLRKAIDYIKYLQQVNHK--LRQENM 50
Query: 513 CLRRREEEK 521
L+ ++
Sbjct: 51 VLKLANQKN 59
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 31.0 bits (70), Expect = 0.14
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 427 SSADEDSEDPQTKAMREKERRQANNVRERIRIRDINEALKELGRMCMAHLKTDKPQTKLG 486
D E+ Q K +ERR+ + + E +E+ + + K
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAK-- 95
Query: 487 ILNMAVEVIMSLEQQVRERNLNPKAACLRRREEEKA 522
E + + +E AA L R +E+
Sbjct: 96 ------EKLAQKMESNKENREAHLAAMLERLQEKDK 125
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 197
Score = 29.4 bits (66), Expect = 0.80
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 278 HRGLHMSIPEQQRLDEAIGYLRSHTEGMEECLDDAINVIRNHADGQLNLP 327
+ H+ L++A+ + H E L + HA L
Sbjct: 128 YEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHA---LEQC 174
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 28.2 bits (62), Expect = 2.7
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 276 SDHRGLHMSIPEQQRLDEAIGYLRSHTEGMEECLDDAINVI 316
++ +S+ E I Y H + + D +NV
Sbjct: 401 NEFNDPTLSLQESLLDTPRIDYYYRHLYYVLTAIGDGVNVK 441
>d2j44a1 b.3.1.3 (A:110-223) Pullulanase PulA {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 114
Score = 26.4 bits (58), Expect = 4.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 96 SSIYTDPYYINN 107
SIYT+PYY+++
Sbjct: 103 ESIYTNPYYVHD 114
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 26.9 bits (59), Expect = 5.2
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 253 PPPLSAQNSEWVSGPHASSPHFTSDHRGLHMSIPEQQRL 291
P + +W A PH H+ + E
Sbjct: 35 SCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVF 73
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.1 bits (58), Expect = 6.2
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 337 SLLYHQHLGNSHAVSSTVGAIPAGYLAGLASSSDTDGHIKIENIANSSKKRKELTIDTKT 396
S + H H V + L +++ G + I + K++ +
Sbjct: 53 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI-TREDETKKVIFEKLD 111
Query: 397 ESICSDQMNSVTSPTNSTSNKGSKRSRRYCSSAD 430
+ +S + SN R +
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 145
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 27.1 bits (59), Expect = 6.4
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 6/98 (6%)
Query: 229 LASIYPADQSASSYSSNPSTPVSSPPPLSAQNSEWVSGPHAS--SPHFTSDHRGLHMSIP 286
+ S Y S L + W P + L+M +
Sbjct: 327 VKRTEKGYVSLGGYGHGCERNSVSLAGLPTSDFGWEFFPEGLYDVLTKYWNRYHLYMYVT 386
Query: 287 E----QQRLDEAIGYLRSHTEGMEECLDDAINVIRNHA 320
E + YL SH + ++ +V
Sbjct: 387 ENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYLH 424
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 27.1 bits (59), Expect = 6.6
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 276 SDHRGLHMSIPEQQRLDEAIGYLRSHTEGMEECLDDAINVI 316
D + P + Y++ H +++ +D +V
Sbjct: 396 GDIDKGDLPKPVALEDHTRLDYIQRHLSVLKQSIDLGADVR 436
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 27.1 bits (59), Expect = 7.2
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 273 HFTSDHRGLHMSIPEQQRLDEA-IGYLRSHTEGMEECLDDAINVI 316
+ T + G + D+ I Y++ H E + + + D NV
Sbjct: 372 YITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVK 416
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
alkalophilus [TaxId: 1397]}
Length = 449
Score = 26.7 bits (58), Expect = 8.7
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 282 HMSIPEQQRLDEAIGYLRSHTEGMEECLDDAINVI 316
+S+ + I YL H ++D IN+
Sbjct: 362 GLSLDGRIHDQRRIDYLAMHLIQASRAIEDGINLK 396
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 26.7 bits (58), Expect = 9.5
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 292 DEAIGYLRSHTEGMEECLDDAINVI 316
E + YL +H E ++ +++
Sbjct: 353 PERVAYLEAHVEAALRAREEGVDLR 377
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.127 0.377
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,072,277
Number of extensions: 96974
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 25
Length of query: 566
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,171,896
Effective search space: 557822496
Effective search space used: 557822496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.2 bits)