Query psy15319
Match_columns 101
No_of_seqs 102 out of 1334
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 17:58:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 3.4E-21 7.4E-26 112.6 10.7 97 1-99 22-123 (160)
2 KOG0027|consensus 99.9 1.6E-20 3.4E-25 110.2 9.9 99 1-99 10-116 (151)
3 KOG0031|consensus 99.8 3.4E-18 7.4E-23 98.3 10.5 96 1-98 34-131 (171)
4 KOG0028|consensus 99.7 6.3E-17 1.4E-21 93.7 10.4 97 1-99 35-137 (172)
5 KOG0030|consensus 99.7 1.5E-16 3.1E-21 90.2 8.7 99 1-99 13-119 (152)
6 PTZ00183 centrin; Provisional 99.7 7.7E-16 1.7E-20 90.3 11.1 97 1-99 19-121 (158)
7 PTZ00184 calmodulin; Provision 99.7 9.7E-16 2.1E-20 88.9 10.7 96 2-99 14-115 (149)
8 KOG0037|consensus 99.4 2.2E-12 4.7E-17 78.3 9.7 90 2-100 60-156 (221)
9 PLN02964 phosphatidylserine de 99.4 1.9E-12 4E-17 89.9 10.2 89 1-96 145-243 (644)
10 KOG0034|consensus 99.4 2.5E-12 5.4E-17 77.6 9.3 93 2-97 36-133 (187)
11 KOG0037|consensus 99.4 4.5E-12 9.7E-17 77.0 7.9 84 1-93 126-217 (221)
12 KOG0044|consensus 99.4 1.2E-11 2.5E-16 74.8 9.3 93 2-97 29-129 (193)
13 KOG0044|consensus 99.3 2.1E-11 4.6E-16 73.7 8.6 95 2-96 67-175 (193)
14 PF13499 EF-hand_7: EF-hand do 99.3 5.4E-12 1.2E-16 64.2 5.1 57 1-57 2-66 (66)
15 cd05022 S-100A13 S-100A13: S-1 99.3 6.3E-12 1.4E-16 67.6 5.5 60 1-60 10-76 (89)
16 cd05027 S-100B S-100B: S-100B 99.3 1.8E-11 4E-16 65.7 6.5 60 1-60 10-80 (88)
17 PTZ00183 centrin; Provisional 99.2 4E-10 8.7E-15 66.0 10.7 95 2-99 56-157 (158)
18 KOG0036|consensus 99.2 2.5E-10 5.5E-15 75.1 8.9 91 1-99 16-113 (463)
19 cd00052 EH Eps15 homology doma 99.2 2.5E-10 5.3E-15 58.0 7.1 58 1-60 1-62 (67)
20 cd05031 S-100A10_like S-100A10 99.2 1.4E-10 3E-15 63.0 6.0 59 1-59 10-79 (94)
21 cd05025 S-100A1 S-100A1: S-100 99.2 2.1E-10 4.6E-15 62.0 6.3 60 1-60 11-81 (92)
22 KOG0027|consensus 99.1 1.7E-09 3.7E-14 63.4 9.1 92 2-96 47-149 (151)
23 COG5126 FRQ1 Ca2+-binding prot 99.1 3.1E-09 6.6E-14 62.6 9.9 91 2-96 59-156 (160)
24 smart00027 EH Eps15 homology d 99.1 6E-10 1.3E-14 60.7 6.5 57 1-59 12-72 (96)
25 PTZ00184 calmodulin; Provision 99.1 4E-09 8.6E-14 61.0 10.4 91 2-95 50-147 (149)
26 cd05026 S-100Z S-100Z: S-100Z 99.1 6.6E-10 1.4E-14 60.3 6.2 59 2-60 13-82 (93)
27 cd05029 S-100A6 S-100A6: S-100 99.1 6.7E-10 1.5E-14 59.6 6.2 58 3-60 14-80 (88)
28 cd00213 S-100 S-100: S-100 dom 99.0 7.9E-10 1.7E-14 59.3 5.5 60 1-60 10-80 (88)
29 PF14658 EF-hand_9: EF-hand do 99.0 3.3E-09 7.1E-14 53.5 6.4 58 3-60 2-65 (66)
30 cd00051 EFh EF-hand, calcium b 99.0 3.3E-09 7.1E-14 52.3 6.5 57 1-57 2-62 (63)
31 PF13833 EF-hand_8: EF-hand do 99.0 5.1E-09 1.1E-13 51.1 6.3 47 12-58 1-52 (54)
32 KOG0034|consensus 98.9 4.9E-08 1.1E-12 59.1 10.4 94 2-97 69-176 (187)
33 cd05023 S-100A11 S-100A11: S-1 98.8 3.3E-08 7.2E-13 53.2 6.4 59 2-60 12-81 (89)
34 KOG0040|consensus 98.8 5E-08 1.1E-12 72.7 7.8 91 3-94 2257-2359(2399)
35 KOG0028|consensus 98.8 3.2E-07 7E-12 53.7 9.6 91 3-96 73-170 (172)
36 KOG0030|consensus 98.7 4E-08 8.7E-13 56.2 5.6 55 3-57 92-149 (152)
37 PF00036 EF-hand_1: EF hand; 98.7 7.3E-09 1.6E-13 44.3 2.0 28 1-28 2-29 (29)
38 cd00252 SPARC_EC SPARC_EC; ext 98.7 6.3E-08 1.4E-12 54.5 5.7 51 3-57 52-106 (116)
39 PF13405 EF-hand_6: EF-hand do 98.7 1.8E-08 3.9E-13 43.8 2.0 29 1-29 2-31 (31)
40 KOG0031|consensus 98.7 1.5E-07 3.2E-12 54.8 6.2 58 1-58 103-164 (171)
41 cd05030 calgranulins Calgranul 98.6 1.2E-07 2.6E-12 50.9 5.3 60 2-61 11-81 (88)
42 KOG0377|consensus 98.6 1.7E-07 3.6E-12 62.9 6.7 97 2-98 467-577 (631)
43 PF13833 EF-hand_8: EF-hand do 98.6 3.9E-07 8.5E-12 44.3 5.6 50 44-96 1-53 (54)
44 KOG0041|consensus 98.6 8.3E-07 1.8E-11 53.9 7.9 62 2-63 102-167 (244)
45 KOG4223|consensus 98.5 4.5E-07 9.8E-12 58.4 5.6 96 2-97 166-270 (325)
46 KOG0038|consensus 98.5 6.1E-07 1.3E-11 52.0 5.3 80 15-97 55-137 (189)
47 PF00036 EF-hand_1: EF hand; 98.4 3.3E-07 7.1E-12 39.1 3.0 27 71-97 1-29 (29)
48 PF13499 EF-hand_7: EF-hand do 98.4 6.2E-07 1.3E-11 45.3 4.1 57 38-94 3-66 (66)
49 PF13405 EF-hand_6: EF-hand do 98.4 4.1E-07 8.9E-12 39.4 2.9 28 71-98 1-31 (31)
50 PF13202 EF-hand_5: EF hand; P 98.3 2.9E-07 6.4E-12 38.0 1.6 25 1-25 1-25 (25)
51 KOG2643|consensus 98.3 3.9E-06 8.4E-11 56.2 6.7 89 2-97 236-347 (489)
52 PLN02964 phosphatidylserine de 98.3 4E-06 8.7E-11 59.1 6.5 58 2-59 182-243 (644)
53 KOG0036|consensus 98.2 6.6E-06 1.4E-10 54.8 7.0 57 2-58 85-145 (463)
54 KOG2562|consensus 98.2 7.4E-06 1.6E-10 55.2 6.6 86 4-95 283-378 (493)
55 KOG4223|consensus 98.1 7.5E-06 1.6E-10 52.9 5.4 92 2-95 80-190 (325)
56 cd05024 S-100A10 S-100A10: A s 98.1 4.5E-05 9.8E-10 41.1 6.6 57 3-60 12-77 (91)
57 cd00051 EFh EF-hand, calcium b 98.0 8.5E-05 1.8E-09 36.0 6.9 48 44-94 13-62 (63)
58 cd05026 S-100Z S-100Z: S-100Z 98.0 0.00013 2.8E-09 39.5 7.9 53 44-98 24-83 (93)
59 PF13202 EF-hand_5: EF hand; P 98.0 8.1E-06 1.8E-10 33.6 2.4 23 72-94 1-25 (25)
60 cd05031 S-100A10_like S-100A10 98.0 0.0001 2.2E-09 39.9 7.2 54 45-100 24-83 (94)
61 smart00027 EH Eps15 homology d 98.0 0.0002 4.3E-09 38.9 8.2 49 44-97 23-73 (96)
62 cd05022 S-100A13 S-100A13: S-1 97.9 6E-05 1.3E-09 40.5 5.7 52 44-97 22-76 (89)
63 KOG0377|consensus 97.9 5E-05 1.1E-09 51.4 6.0 57 2-58 550-614 (631)
64 cd05027 S-100B S-100B: S-100B 97.9 0.00029 6.2E-09 37.8 7.7 53 44-98 22-81 (88)
65 cd05029 S-100A6 S-100A6: S-100 97.9 0.00013 2.9E-09 39.1 6.4 52 45-98 26-81 (88)
66 cd00252 SPARC_EC SPARC_EC; ext 97.8 0.0002 4.4E-09 40.3 7.2 57 33-96 46-108 (116)
67 cd00052 EH Eps15 homology doma 97.8 0.00022 4.8E-09 35.7 6.6 49 44-97 12-62 (67)
68 cd05030 calgranulins Calgranul 97.8 0.0001 2.2E-09 39.5 5.5 54 45-98 24-81 (88)
69 cd00213 S-100 S-100: S-100 dom 97.7 0.00022 4.8E-09 38.0 6.0 54 44-97 23-80 (88)
70 cd05025 S-100A1 S-100A1: S-100 97.7 0.00069 1.5E-08 36.4 7.8 55 44-98 23-82 (92)
71 PF14788 EF-hand_10: EF hand; 97.7 0.00026 5.6E-09 34.0 5.3 43 16-58 2-48 (51)
72 KOG0751|consensus 97.7 0.00039 8.3E-09 47.9 7.9 88 6-98 43-138 (694)
73 smart00054 EFh EF-hand, calciu 97.7 5.3E-05 1.1E-09 31.0 2.4 27 1-27 2-28 (29)
74 KOG0751|consensus 97.6 0.00014 3E-09 49.9 5.1 89 2-97 111-208 (694)
75 cd05023 S-100A11 S-100A11: S-1 97.6 0.0011 2.4E-08 35.6 7.7 55 44-98 23-82 (89)
76 KOG2643|consensus 97.5 0.0011 2.3E-08 45.0 8.1 92 4-96 323-453 (489)
77 PRK12309 transaldolase/EF-hand 97.5 0.00024 5.3E-09 47.8 4.9 51 29-95 328-384 (391)
78 KOG0038|consensus 97.5 0.0025 5.5E-08 37.3 8.4 90 4-96 76-177 (189)
79 PF14788 EF-hand_10: EF hand; 97.5 0.00058 1.3E-08 32.8 4.8 47 48-97 2-50 (51)
80 KOG0169|consensus 97.5 0.0009 2E-08 47.9 7.6 90 2-97 139-233 (746)
81 PF12763 EF-hand_4: Cytoskelet 97.3 0.00082 1.8E-08 37.2 4.8 54 2-58 13-70 (104)
82 KOG4065|consensus 97.2 0.0016 3.4E-08 36.6 5.2 54 3-56 71-142 (144)
83 KOG0035|consensus 97.2 0.0016 3.4E-08 47.7 6.5 90 1-92 749-848 (890)
84 PF10591 SPARC_Ca_bdg: Secrete 97.1 6.8E-05 1.5E-09 42.1 -0.7 49 5-55 60-112 (113)
85 KOG0046|consensus 97.1 0.0015 3.3E-08 45.2 5.4 57 2-59 22-85 (627)
86 KOG4666|consensus 97.1 0.0019 4.1E-08 42.4 5.5 93 2-98 262-361 (412)
87 smart00054 EFh EF-hand, calciu 97.1 0.00086 1.9E-08 27.1 2.6 25 72-96 2-28 (29)
88 PRK12309 transaldolase/EF-hand 96.8 0.012 2.6E-07 39.8 7.6 45 2-59 337-385 (391)
89 cd05024 S-100A10 S-100A10: A s 96.8 0.015 3.3E-07 31.4 6.6 53 44-98 20-78 (91)
90 KOG0041|consensus 96.8 0.0024 5.3E-08 39.2 3.8 30 71-100 100-131 (244)
91 PF09279 EF-hand_like: Phospho 96.7 0.009 1.9E-07 31.4 5.3 59 1-60 2-70 (83)
92 PF12763 EF-hand_4: Cytoskelet 96.5 0.03 6.5E-07 31.0 6.6 55 37-96 12-71 (104)
93 KOG4251|consensus 96.4 0.0095 2.1E-07 37.9 4.6 22 3-24 105-126 (362)
94 PF05042 Caleosin: Caleosin re 96.3 0.014 3E-07 35.1 4.8 92 5-96 13-124 (174)
95 PF14658 EF-hand_9: EF-hand do 96.1 0.071 1.5E-06 27.0 6.0 52 44-97 11-65 (66)
96 PF08726 EFhand_Ca_insen: Ca2+ 95.3 0.018 3.8E-07 29.5 2.2 29 67-95 3-32 (69)
97 PF09279 EF-hand_like: Phospho 95.3 0.1 2.3E-06 27.3 5.2 60 36-96 1-69 (83)
98 KOG1707|consensus 95.2 0.26 5.6E-06 35.2 8.1 100 1-100 197-347 (625)
99 COG4103 Uncharacterized protei 95.2 0.28 6.1E-06 28.7 6.9 86 12-99 41-135 (148)
100 KOG4666|consensus 95.1 0.017 3.7E-07 38.1 2.1 51 44-96 272-324 (412)
101 KOG4251|consensus 94.8 0.049 1.1E-06 34.8 3.4 11 44-54 153-163 (362)
102 PF05517 p25-alpha: p25-alpha 94.5 0.15 3.2E-06 30.2 5.0 58 2-59 2-69 (154)
103 KOG2243|consensus 94.5 0.1 2.2E-06 41.1 4.9 55 3-58 4061-4119(5019)
104 KOG0040|consensus 93.9 0.32 6.8E-06 38.6 6.5 53 44-96 2266-2324(2399)
105 cd07176 terB tellurite resista 93.8 0.58 1.3E-05 25.5 6.2 86 12-99 15-111 (111)
106 KOG4578|consensus 93.6 0.088 1.9E-06 34.9 2.9 56 5-60 339-399 (421)
107 KOG0042|consensus 93.2 0.28 6.1E-06 34.9 4.9 61 3-63 597-661 (680)
108 PLN02952 phosphoinositide phos 93.1 0.53 1.1E-05 33.9 6.3 67 12-79 13-84 (599)
109 PF14513 DAG_kinase_N: Diacylg 92.6 0.65 1.4E-05 27.1 5.3 66 13-82 5-81 (138)
110 KOG3555|consensus 92.5 0.22 4.9E-06 33.3 3.6 51 4-58 255-309 (434)
111 PF08414 NADPH_Ox: Respiratory 92.4 0.3 6.4E-06 26.8 3.4 58 33-96 28-92 (100)
112 KOG3866|consensus 92.3 1.3 2.9E-05 29.4 6.8 85 4-95 249-353 (442)
113 KOG2562|consensus 92.0 1.3 2.9E-05 30.8 6.8 85 8-92 324-420 (493)
114 PF05099 TerB: Tellurite resis 91.4 0.13 2.8E-06 29.5 1.5 87 12-100 36-131 (140)
115 KOG1029|consensus 91.4 0.28 6.2E-06 36.2 3.3 55 2-58 198-256 (1118)
116 KOG1707|consensus 89.3 1 2.2E-05 32.3 4.6 58 2-59 318-377 (625)
117 KOG2871|consensus 89.1 0.55 1.2E-05 31.8 3.0 43 1-43 311-353 (449)
118 cd07313 terB_like_2 tellurium 89.0 2.4 5.1E-05 22.9 6.5 80 12-93 12-97 (104)
119 PF01023 S_100: S-100/ICaBP ty 88.7 1 2.2E-05 20.8 3.0 27 70-96 6-36 (44)
120 PF10591 SPARC_Ca_bdg: Secrete 87.9 0.21 4.5E-06 28.0 0.5 55 33-92 52-112 (113)
121 PF05042 Caleosin: Caleosin re 87.8 2 4.3E-05 26.1 4.6 23 72-94 141-164 (174)
122 KOG0169|consensus 85.6 11 0.00025 28.0 8.1 90 3-96 176-274 (746)
123 TIGR00624 tag DNA-3-methyladen 84.1 2.1 4.6E-05 26.1 3.5 52 1-54 55-113 (179)
124 PLN02952 phosphoinositide phos 83.3 15 0.00033 26.8 10.1 52 44-96 13-65 (599)
125 PF08414 NADPH_Ox: Respiratory 83.2 2.9 6.3E-05 23.0 3.5 53 3-60 34-93 (100)
126 KOG3449|consensus 81.8 7.1 0.00015 21.9 5.1 52 4-56 6-57 (112)
127 KOG0046|consensus 81.5 17 0.00037 26.2 7.4 53 44-96 31-85 (627)
128 COG2818 Tag 3-methyladenine DN 81.5 4.6 0.0001 24.8 4.2 54 1-54 57-117 (188)
129 PLN02228 Phosphoinositide phos 81.3 18 0.00039 26.3 7.7 63 33-96 22-92 (567)
130 PF12174 RST: RCD1-SRO-TAF4 (R 80.5 6.1 0.00013 20.3 4.3 13 83-95 40-52 (70)
131 PRK09430 djlA Dna-J like membr 78.6 15 0.00033 23.8 8.0 84 12-99 68-163 (267)
132 cd07316 terB_like_DjlA N-termi 78.3 8.6 0.00019 20.7 7.4 80 12-91 12-96 (106)
133 KOG1955|consensus 76.2 9.8 0.00021 27.2 5.0 54 4-59 236-293 (737)
134 PF09336 Vps4_C: Vps4 C termin 76.1 4.3 9.3E-05 20.2 2.5 26 15-40 29-54 (62)
135 KOG4347|consensus 75.9 8.2 0.00018 28.3 4.7 36 44-82 568-603 (671)
136 PF00404 Dockerin_1: Dockerin 75.7 4.1 9E-05 15.7 2.5 15 9-23 1-15 (21)
137 PF03672 UPF0154: Uncharacteri 74.1 9.6 0.00021 19.2 3.8 29 15-43 31-59 (64)
138 KOG1264|consensus 72.7 9 0.0002 29.2 4.3 93 4-96 149-249 (1267)
139 KOG2871|consensus 71.3 5.3 0.00011 27.4 2.8 33 66-98 305-339 (449)
140 KOG1265|consensus 71.3 45 0.00098 26.0 7.5 78 10-96 159-249 (1189)
141 PF09069 EF-hand_3: EF-hand; 70.9 13 0.00027 20.1 3.7 27 70-96 3-30 (90)
142 PRK10353 3-methyl-adenine DNA 70.6 2.2 4.8E-05 26.2 0.9 54 1-54 56-116 (187)
143 KOG3555|consensus 69.6 5.9 0.00013 26.9 2.7 56 32-94 247-308 (434)
144 PF07879 PHB_acc_N: PHB/PHA ac 69.5 3.6 7.8E-05 20.7 1.3 20 77-96 10-31 (64)
145 KOG1955|consensus 69.5 4.1 8.9E-05 29.0 2.0 26 1-26 267-292 (737)
146 PF02761 Cbl_N2: CBL proto-onc 69.5 15 0.00033 19.6 6.1 62 32-96 4-70 (85)
147 PRK00523 hypothetical protein; 67.6 16 0.00034 18.9 3.8 28 15-42 39-66 (72)
148 cd06395 PB1_Map2k5 PB1 domain 66.5 7.8 0.00017 20.5 2.3 43 46-95 21-67 (91)
149 KOG0506|consensus 66.4 34 0.00074 24.6 5.8 53 5-57 92-156 (622)
150 KOG4347|consensus 66.2 7.4 0.00016 28.5 2.8 42 2-43 558-599 (671)
151 PLN02230 phosphoinositide phos 66.0 32 0.00069 25.3 5.8 57 2-59 32-102 (598)
152 KOG4578|consensus 65.8 8.4 0.00018 26.0 2.8 50 44-95 346-397 (421)
153 KOG1029|consensus 65.1 3.7 7.9E-05 30.8 1.2 27 2-28 52-78 (1118)
154 COG5562 Phage envelope protein 63.9 7.2 0.00016 22.7 2.0 46 13-59 54-100 (137)
155 PLN02222 phosphoinositide phos 61.6 42 0.0009 24.6 5.8 56 2-59 28-90 (581)
156 KOG0039|consensus 61.2 19 0.00041 26.5 4.1 43 45-96 2-45 (646)
157 PF08976 DUF1880: Domain of un 60.7 13 0.00027 21.2 2.6 27 32-58 4-34 (118)
158 smart00513 SAP Putative DNA-bi 59.7 13 0.00029 15.9 2.1 17 84-100 3-19 (35)
159 PRK08181 transposase; Validate 59.3 33 0.00073 22.3 4.7 46 13-58 4-50 (269)
160 PRK01844 hypothetical protein; 59.3 24 0.00052 18.2 3.8 28 15-42 38-65 (72)
161 KOG0998|consensus 58.9 2.9 6.2E-05 31.6 -0.2 56 2-59 286-345 (847)
162 COG2818 Tag 3-methyladenine DN 58.8 9.1 0.0002 23.6 1.9 31 70-100 55-87 (188)
163 smart00540 LEM in nuclear memb 58.2 14 0.00029 17.2 2.1 19 83-101 4-22 (44)
164 PF02037 SAP: SAP domain; Int 57.0 12 0.00026 16.1 1.8 17 84-100 3-19 (35)
165 KOG4004|consensus 56.0 8 0.00017 24.2 1.4 22 3-24 226-247 (259)
166 PF04391 DUF533: Protein of un 55.0 48 0.001 20.5 4.7 44 12-55 92-136 (188)
167 PF03352 Adenine_glyco: Methyl 54.2 2.7 5.8E-05 25.7 -0.8 56 2-57 52-114 (179)
168 TIGR01639 P_fal_TIGR01639 Plas 53.4 28 0.0006 17.2 3.8 30 14-43 8-37 (61)
169 PF10260 SAYSvFN: Uncharacteri 52.6 12 0.00026 19.3 1.5 22 73-94 44-70 (71)
170 COG3763 Uncharacterized protei 52.4 32 0.0007 17.7 3.7 28 15-42 38-65 (71)
171 PF03979 Sigma70_r1_1: Sigma-7 52.1 28 0.0006 18.2 2.9 40 36-80 8-49 (82)
172 PLN02228 Phosphoinositide phos 52.0 80 0.0017 23.1 5.9 56 2-59 27-92 (567)
173 PHA02335 hypothetical protein 51.6 42 0.00092 18.8 5.1 33 44-85 21-53 (118)
174 KOG0871|consensus 51.1 15 0.00032 21.8 1.9 23 78-100 58-82 (156)
175 PRK00819 RNA 2'-phosphotransfe 50.9 48 0.001 20.3 4.2 34 10-43 28-61 (179)
176 PF07308 DUF1456: Protein of u 50.7 34 0.00073 17.4 5.4 26 18-43 16-41 (68)
177 PF14164 YqzH: YqzH-like prote 50.3 34 0.00073 17.3 3.9 28 70-97 8-38 (64)
178 PTZ00373 60S Acidic ribosomal 49.9 47 0.001 18.8 3.7 34 10-43 14-47 (112)
179 PF10281 Ish1: Putative stress 49.8 20 0.00043 15.7 1.9 15 86-100 5-19 (38)
180 PF01885 PTS_2-RNA: RNA 2'-pho 48.8 44 0.00096 20.5 3.8 35 9-43 26-60 (186)
181 COG3426 Butyrate kinase [Energ 48.3 82 0.0018 21.2 5.1 51 8-60 211-264 (358)
182 PRK05988 formate dehydrogenase 47.4 60 0.0013 19.3 4.4 31 70-100 23-54 (156)
183 PF12207 DUF3600: Domain of un 47.2 36 0.00078 20.3 3.1 50 44-97 65-118 (162)
184 PF09373 PMBR: Pseudomurein-bi 47.1 25 0.00055 14.9 2.0 15 45-59 2-16 (33)
185 PF06569 DUF1128: Protein of u 45.4 44 0.00096 17.2 3.5 33 67-99 36-68 (71)
186 PF10437 Lip_prot_lig_C: Bacte 45.1 46 0.00099 17.3 3.2 15 29-43 53-67 (86)
187 PLN02222 phosphoinositide phos 44.8 1.3E+02 0.0027 22.3 7.5 61 35-96 25-90 (581)
188 PHA00003 B internal scaffoldin 44.7 44 0.00095 18.7 3.0 52 47-100 64-120 (120)
189 COG5069 SAC6 Ca2+-binding acti 44.6 27 0.00058 25.1 2.6 60 4-63 490-552 (612)
190 PF09851 SHOCT: Short C-termin 44.3 28 0.0006 14.6 3.5 12 83-94 15-26 (31)
191 TIGR01565 homeo_ZF_HD homeobox 43.9 42 0.0009 16.5 3.3 31 70-100 11-45 (58)
192 KOG4286|consensus 43.3 1.5E+02 0.0032 22.9 6.1 88 5-94 476-578 (966)
193 PF12949 HeH: HeH/LEM domain; 42.3 19 0.00042 15.7 1.2 16 84-99 3-18 (35)
194 PRK07571 bidirectional hydroge 42.3 78 0.0017 19.2 4.4 33 68-100 34-67 (169)
195 PF14237 DUF4339: Domain of un 42.1 29 0.00062 15.7 1.8 14 83-96 12-25 (45)
196 PF08812 YtxC: YtxC-like famil 41.6 8.4 0.00018 24.3 -0.1 22 75-96 148-170 (221)
197 COG3343 RpoE DNA-directed RNA 40.8 64 0.0014 19.7 3.5 52 46-97 29-81 (175)
198 cd05833 Ribosomal_P2 Ribosomal 40.4 68 0.0015 18.0 3.7 50 6-56 8-57 (109)
199 PLN02230 phosphoinositide phos 40.3 58 0.0013 24.0 3.8 32 66-97 25-57 (598)
200 PHA02105 hypothetical protein 39.5 44 0.00095 16.5 2.2 43 15-57 4-55 (68)
201 COG2979 Uncharacterized protei 39.3 1E+02 0.0022 19.6 5.3 46 12-57 123-169 (225)
202 PF13829 DUF4191: Domain of un 37.9 81 0.0018 20.2 3.8 38 6-43 158-195 (224)
203 KOG2301|consensus 37.5 20 0.00044 29.4 1.4 56 2-59 1420-1484(1592)
204 PF02337 Gag_p10: Retroviral G 37.2 71 0.0015 17.3 4.0 37 20-56 13-58 (90)
205 TIGR01958 nuoE_fam NADH-quinon 36.6 77 0.0017 18.5 3.4 33 68-100 14-47 (148)
206 PF12408 DUF3666: Ribose-5-pho 36.4 11 0.00023 17.9 -0.1 23 72-94 7-32 (48)
207 cd08324 CARD_NOD1_CARD4 Caspas 36.2 73 0.0016 17.1 6.2 48 44-97 26-73 (85)
208 PF00046 Homeobox: Homeobox do 35.8 52 0.0011 15.3 2.8 22 78-99 18-39 (57)
209 PF11593 Med3: Mediator comple 35.7 1.5E+02 0.0033 20.6 6.1 45 14-60 6-55 (379)
210 PRK07539 NADH dehydrogenase su 35.7 96 0.0021 18.3 4.4 32 69-100 21-53 (154)
211 PF11829 DUF3349: Protein of u 35.6 79 0.0017 17.3 6.2 58 16-75 20-81 (96)
212 PRK09613 thiH thiamine biosynt 35.3 1.7E+02 0.0036 21.0 6.8 46 12-58 9-56 (469)
213 PF11165 DUF2949: Protein of u 34.8 63 0.0014 15.9 5.2 13 83-95 42-54 (58)
214 PF09693 Phage_XkdX: Phage unc 33.9 32 0.0007 15.4 1.2 11 83-93 25-35 (40)
215 PF04282 DUF438: Family of unk 33.8 73 0.0016 16.4 6.3 51 22-74 3-53 (71)
216 cd04411 Ribosomal_P1_P2_L12p R 32.8 93 0.002 17.3 4.1 43 16-59 17-59 (105)
217 TIGR03581 EF_0839 conserved hy 32.7 1.4E+02 0.003 19.2 7.1 83 11-96 130-233 (236)
218 cd08809 CARD_CARD9 Caspase act 32.7 86 0.0019 16.8 3.8 46 13-58 28-75 (86)
219 cd01102 Link_Domain The link d 32.2 90 0.002 16.9 3.3 40 4-43 2-42 (92)
220 PF10897 DUF2713: Protein of u 32.0 1.4E+02 0.0029 18.9 5.9 44 44-87 174-228 (246)
221 cd03521 Link_domain_KIAA0527_l 30.8 98 0.0021 16.9 3.8 48 4-51 2-61 (95)
222 KOG0035|consensus 30.7 2.7E+02 0.0058 21.9 6.4 58 36-95 748-815 (890)
223 COG1059 Thermostable 8-oxoguan 30.4 1.4E+02 0.0031 18.7 5.0 33 67-99 52-85 (210)
224 PHA03415 putative internal vir 30.3 99 0.0021 23.9 3.7 38 3-43 93-130 (1019)
225 PF08672 APC2: Anaphase promot 30.3 77 0.0017 15.6 3.3 30 67-96 12-44 (60)
226 PLN02508 magnesium-protoporphy 30.3 65 0.0014 21.9 2.6 35 45-87 93-132 (357)
227 cd07177 terB_like tellurium re 30.2 88 0.0019 16.2 5.8 79 12-92 12-96 (104)
228 PF06226 DUF1007: Protein of u 29.8 58 0.0013 20.3 2.3 21 6-26 57-77 (212)
229 TIGR02834 spo_ytxC putative sp 29.7 20 0.00043 23.5 0.2 23 74-96 203-226 (276)
230 COG5502 Uncharacterized conser 29.5 1.2E+02 0.0027 17.7 7.1 52 44-97 72-124 (135)
231 cd03515 Link_domain_TSG_6_like 28.9 1.1E+02 0.0023 16.7 4.1 40 4-43 2-42 (93)
232 PF11422 IBP39: Initiator bind 28.2 1.5E+02 0.0033 18.3 6.6 16 83-98 74-89 (181)
233 cd08815 Death_TNFRSF25_DR3 Dea 28.0 1E+02 0.0022 16.2 2.8 23 15-37 8-30 (77)
234 TIGR01669 phage_XkdX phage unc 27.9 53 0.0012 15.2 1.5 11 83-93 30-40 (45)
235 CHL00185 ycf59 magnesium-proto 27.8 47 0.001 22.5 1.7 35 45-87 93-132 (351)
236 PF08006 DUF1700: Protein of u 27.7 70 0.0015 19.2 2.4 27 17-43 2-28 (181)
237 TIGR01848 PHA_reg_PhaR polyhyd 27.6 1.2E+02 0.0026 17.0 5.3 21 6-26 10-30 (107)
238 PRK00199 ihfB integration host 27.5 99 0.0021 16.4 2.7 26 17-42 2-27 (94)
239 TIGR00988 hip integration host 27.2 1.1E+02 0.0023 16.2 2.8 25 17-41 2-26 (94)
240 PRK11858 aksA trans-homoaconit 27.1 2.1E+02 0.0046 19.6 5.6 40 20-59 324-370 (378)
241 cd04790 HTH_Cfa-like_unk Helix 27.1 1.5E+02 0.0032 17.9 4.6 48 45-100 113-160 (172)
242 PRK13654 magnesium-protoporphy 26.8 54 0.0012 22.3 1.8 35 45-87 97-136 (355)
243 cd01047 ACSF Aerobic Cyclase S 26.6 62 0.0013 21.8 2.0 35 45-87 77-116 (323)
244 PRK02363 DNA-directed RNA poly 26.5 54 0.0012 18.9 1.6 50 40-89 12-62 (129)
245 KOG4301|consensus 26.4 1E+02 0.0023 21.2 3.1 55 5-59 116-173 (434)
246 PRK14981 DNA-directed RNA poly 26.4 1.3E+02 0.0028 16.8 3.7 27 31-57 78-104 (112)
247 cd08315 Death_TRAILR_DR4_DR5 D 26.4 1.2E+02 0.0026 16.4 8.6 76 15-98 16-94 (96)
248 PF03801 Ndc80_HEC: HEC/Ndc80p 26.2 1.5E+02 0.0033 17.6 5.7 57 3-60 78-135 (157)
249 PLN00138 large subunit ribosom 26.2 1.3E+02 0.0029 16.9 3.7 33 11-43 13-45 (113)
250 TIGR02675 tape_meas_nterm tape 26.0 1E+02 0.0023 15.7 2.5 15 44-58 27-41 (75)
251 TIGR02029 AcsF magnesium-proto 25.7 61 0.0013 21.9 1.9 35 45-87 87-126 (337)
252 cd08785 CARD_CARD9-like Caspas 25.3 1.2E+02 0.0026 16.2 4.3 46 13-58 28-75 (86)
253 PF02885 Glycos_trans_3N: Glyc 25.1 1E+02 0.0022 15.2 5.4 24 29-52 12-36 (66)
254 PF10256 Erf4: Golgin subfamil 24.7 77 0.0017 17.6 2.0 15 83-97 28-42 (118)
255 KOG0869|consensus 24.7 1.7E+02 0.0037 17.7 6.2 16 12-27 29-44 (168)
256 COG0177 Nth Predicted EndoIII- 24.7 1.2E+02 0.0026 19.2 3.0 34 67-100 46-82 (211)
257 cd01612 APG12_C Ubiquitin-like 24.4 1.3E+02 0.0027 16.1 4.5 40 45-84 23-75 (87)
258 PF15244 HSD3: Hydroxy-steroid 24.3 2.5E+02 0.0055 19.9 4.6 30 68-97 380-411 (419)
259 PF12486 DUF3702: ImpA domain 23.3 51 0.0011 19.6 1.1 20 6-25 76-95 (148)
260 cd03035 ArsC_Yffb Arsenate Red 23.2 56 0.0012 17.9 1.3 16 83-98 34-49 (105)
261 cd03036 ArsC_like Arsenate Red 22.4 68 0.0015 17.6 1.5 16 83-98 34-49 (111)
262 cd03033 ArsC_15kD Arsenate Red 22.4 58 0.0013 18.2 1.2 16 83-98 35-50 (113)
263 COG5394 Uncharacterized protei 22.3 70 0.0015 19.5 1.6 20 77-96 19-40 (193)
264 PF04876 Tenui_NCP: Tenuivirus 22.3 1.9E+02 0.0041 17.4 5.3 17 45-61 97-113 (175)
265 PF11116 DUF2624: Protein of u 22.3 1.4E+02 0.0031 16.0 7.5 30 14-43 13-42 (85)
266 PF01454 MAGE: MAGE family; I 22.2 75 0.0016 19.3 1.8 18 83-100 119-136 (195)
267 PF07166 DUF1398: Protein of u 22.1 1.2E+02 0.0026 17.5 2.4 29 31-59 66-95 (125)
268 COG2012 RPB5 DNA-directed RNA 22.1 99 0.0021 16.3 1.9 18 83-100 19-36 (80)
269 TIGR00014 arsC arsenate reduct 22.1 64 0.0014 17.9 1.4 16 83-98 34-49 (114)
270 PF08730 Rad33: Rad33; InterP 22.0 2E+02 0.0044 17.6 7.6 52 46-99 101-166 (170)
271 PF07862 Nif11: Nitrogen fixat 22.0 1E+02 0.0022 14.1 2.4 17 19-35 30-46 (49)
272 PF13310 Virulence_RhuM: Virul 22.0 1E+02 0.0022 20.2 2.3 11 83-93 229-239 (260)
273 smart00874 B5 tRNA synthetase 21.8 93 0.002 15.3 1.8 16 84-99 18-33 (71)
274 KOG2303|consensus 21.8 1.8E+02 0.0039 21.4 3.6 19 8-26 534-552 (706)
275 PF12767 SAGA-Tad1: Transcript 21.6 2.3E+02 0.0051 18.1 4.4 51 12-63 5-57 (252)
276 PF05872 DUF853: Bacterial pro 21.6 2.6E+02 0.0055 20.3 4.3 49 47-97 105-157 (502)
277 COG0541 Ffh Signal recognition 21.2 3.2E+02 0.007 19.6 4.9 44 17-60 295-339 (451)
278 PF14297 DUF4373: Domain of un 21.2 1.1E+02 0.0024 16.0 2.1 16 85-100 58-73 (87)
279 KOG3197|consensus 21.2 2.1E+02 0.0045 18.0 3.4 25 67-91 154-179 (210)
280 PHA02952 EEV maturation protei 20.9 2.9E+02 0.0063 20.8 4.6 43 52-99 100-142 (648)
281 PRK06526 transposase; Provisio 20.7 2.5E+02 0.0054 18.1 4.1 41 19-59 3-44 (254)
282 COG3793 TerB Tellurite resista 20.6 2E+02 0.0044 17.1 6.9 87 12-99 37-137 (144)
283 PF03683 UPF0175: Uncharacteri 20.5 1.1E+02 0.0024 15.7 2.0 14 86-99 47-60 (76)
284 COG1460 Uncharacterized protei 20.4 1.8E+02 0.004 16.5 3.7 27 31-57 79-105 (114)
285 cd08332 CARD_CASP2 Caspase act 20.2 1.6E+02 0.0034 15.7 4.4 43 13-58 32-76 (90)
286 PRK09462 fur ferric uptake reg 20.2 1.9E+02 0.0042 16.7 4.3 16 15-30 33-48 (148)
287 PRK09183 transposase/IS protei 20.1 2.6E+02 0.0056 18.0 4.4 42 18-59 6-48 (259)
288 PF00076 RRM_1: RNA recognitio 20.0 95 0.0021 14.5 1.6 16 84-99 9-24 (70)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.87 E-value=3.4e-21 Score=112.58 Aligned_cols=97 Identities=25% Similarity=0.540 Sum_probs=91.4
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhC---CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA---TGPINFTQLLSLFANRMSGGATDDDEVVVAAFR 77 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~ 77 (101)
++++|..+|++++|.|+..++..+|+.+|..++..++..++..- ++.|+|.+|+.+|...... .+..+.+.+||+
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~--~~~~Eel~~aF~ 99 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKR--GDKEEELREAFK 99 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhcc--CCcHHHHHHHHH
Confidence 47899999999999999999999999999999999999999993 4899999999999998887 788999999999
Q ss_pred hccCC--CCcCHHHHHHHHHhhcc
Q psy15319 78 AFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 78 ~~D~~--g~is~~el~~~l~~~g~ 99 (101)
.||+| |+|+..+|..++..+|.
T Consensus 100 ~fD~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 100 LFDKDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred HhCCCCCceecHHHHHHHHHhhcc
Confidence 99999 99999999999998874
No 2
>KOG0027|consensus
Probab=99.85 E-value=1.6e-20 Score=110.16 Aligned_cols=99 Identities=25% Similarity=0.510 Sum_probs=88.5
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCC--CcHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGAT--DDDEVVVA 74 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~--~~~~~~~~ 74 (101)
++++|..||++++|+|+..++..+|+.+|..+++.++..++.. ++|.|++.+|+.++......... ...+.++.
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~e 89 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKE 89 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHH
Confidence 4678999999999999999999999999999999999999999 68999999999999876654111 13569999
Q ss_pred HHHhccCC--CCcCHHHHHHHHHhhcc
Q psy15319 75 AFRAFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 75 ~f~~~D~~--g~is~~el~~~l~~~g~ 99 (101)
||+.+|+| |+||..||++++..+|.
T Consensus 90 aF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 90 AFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 99999999 99999999999999885
No 3
>KOG0031|consensus
Probab=99.79 E-value=3.4e-18 Score=98.31 Aligned_cols=96 Identities=39% Similarity=0.801 Sum_probs=92.2
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcc
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFD 80 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D 80 (101)
++++|..+|.|+||.|+.++++..+.++|..++++++..++.+.+|.|+|.-|+.++..++.. .++++.+..||+.||
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~g--tdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNG--TDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcC--CCHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred CC--CCcCHHHHHHHHHhhc
Q psy15319 81 EG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 81 ~~--g~is~~el~~~l~~~g 98 (101)
.+ |+|..+.++.+|.+.|
T Consensus 112 ~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred ccCCCccCHHHHHHHHHHhc
Confidence 99 9999999999998876
No 4
>KOG0028|consensus
Probab=99.74 E-value=6.3e-17 Score=93.65 Aligned_cols=97 Identities=24% Similarity=0.444 Sum_probs=91.0
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
++..|..||++++|+|+..++..+++++|+.+.+.++.+++.. +.|.|+|++|+..+..++.. .++.+.+..+|
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e--~dt~eEi~~af 112 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE--RDTKEEIKKAF 112 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc--cCcHHHHHHHH
Confidence 4678999999999999999999999999999999999999988 67999999999999998888 78999999999
Q ss_pred HhccCC--CCcCHHHHHHHHHhhcc
Q psy15319 77 RAFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~~g~ 99 (101)
+.+|.| |.||..+|+.+...+|.
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCc
Confidence 999998 99999999999999885
No 5
>KOG0030|consensus
Probab=99.71 E-value=1.5e-16 Score=90.24 Aligned_cols=99 Identities=21% Similarity=0.415 Sum_probs=88.9
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--C----CCCcCHHHHHHHHHhhhcCCCCCcHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE--A----TGPINFTQLLSLFANRMSGGATDDDEVVVA 74 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~----~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 74 (101)
++++|..||..+||+|+..+...+|+++|.+|+..++.+.+.. . -.+|+|++|+.++...-+.+.....++...
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfve 92 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVE 92 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHH
Confidence 3689999999999999999999999999999999999988877 2 368999999999976655545788899999
Q ss_pred HHHhccCC--CCcCHHHHHHHHHhhcc
Q psy15319 75 AFRAFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 75 ~f~~~D~~--g~is~~el~~~l~~~g~ 99 (101)
-.+.||+. |+|...||+++|.++|.
T Consensus 93 gLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 93 GLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred HHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 99999999 99999999999999884
No 6
>PTZ00183 centrin; Provisional
Probab=99.70 E-value=7.7e-16 Score=90.31 Aligned_cols=97 Identities=25% Similarity=0.519 Sum_probs=85.4
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
++.+|..+|++++|.|+..+|..+++.+|..++..++..++.. ++|.|+|.+|+.++...... ......+..+|
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~--~~~~~~l~~~F 96 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE--RDPREEILKAF 96 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 3578999999999999999999999999988888888888877 78999999999988765544 56678899999
Q ss_pred HhccCC--CCcCHHHHHHHHHhhcc
Q psy15319 77 RAFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~~g~ 99 (101)
+.+|.+ |+|+..||..++..+|.
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~ 121 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGE 121 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 999998 99999999999988763
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.69 E-value=9.7e-16 Score=88.91 Aligned_cols=96 Identities=32% Similarity=0.626 Sum_probs=84.6
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFR 77 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~ 77 (101)
+..|..+|.+++|.|+.++|..++..++..++...+..++.. ++|.|+|++|+.++...... ......+..+|+
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~~F~ 91 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD--TDSEEEIKEAFK 91 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC--CcHHHHHHHHHH
Confidence 578999999999999999999999999998888888888887 68899999999998766554 456678999999
Q ss_pred hccCC--CCcCHHHHHHHHHhhcc
Q psy15319 78 AFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 78 ~~D~~--g~is~~el~~~l~~~g~ 99 (101)
.+|.+ |+|+.+++..++..+|.
T Consensus 92 ~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
T PTZ00184 92 VFDRDGNGFISAAELRHVMTNLGE 115 (149)
T ss_pred hhCCCCCCeEeHHHHHHHHHHHCC
Confidence 99998 99999999999988764
No 8
>KOG0037|consensus
Probab=99.44 E-value=2.2e-12 Score=78.35 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=76.1
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL-VTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
..+|...|+++.|.|+.+|++.+|...+.. .+.+.++.|+.. +.|.|.+.||.+++.. + ..++.+|
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~-i--------~~Wr~vF 130 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY-I--------NQWRNVF 130 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH-H--------HHHHHHH
Confidence 457889999999999999999999866554 455666666665 7899999999999844 3 4599999
Q ss_pred HhccCC--CCcCHHHHHHHHHhhccC
Q psy15319 77 RAFDEG--GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~~g~~ 100 (101)
+.+|.| |.|+..||++.|..+|..
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~ 156 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYR 156 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcC
Confidence 999999 999999999999999863
No 9
>PLN02964 phosphatidylserine decarboxylase
Probab=99.44 E-value=1.9e-12 Score=89.91 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=77.1
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVG-KLVTDKE---VDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVV 72 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 72 (101)
++++|..+|++++|.+ +..+++++| ..+++.+ +..++.. ++|.|+++||+.++... .. ..+.+++
T Consensus 145 lkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~--~~seEEL 217 (644)
T PLN02964 145 ACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GN--LVAANKK 217 (644)
T ss_pred HHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-cc--CCCHHHH
Confidence 3578999999999996 888999999 5888887 6777776 78999999999999753 44 5778889
Q ss_pred HHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 73 VAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 73 ~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
..+|+.+|+| |+|+.+||.+++..
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999 99999999999987
No 10
>KOG0034|consensus
Probab=99.43 E-value=2.5e-12 Score=77.57 Aligned_cols=93 Identities=20% Similarity=0.391 Sum_probs=78.2
Q ss_pred hHhhhccCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCC-cCHHHHHHHHHhhhcCCCCCcHHHHHHHHHh
Q psy15319 2 SKGFALMDAD-KDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-ATGP-INFTQLLSLFANRMSGGATDDDEVVVAAFRA 78 (101)
Q Consensus 2 ~~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~-i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~ 78 (101)
...|..+|++ ++|.++.++|..+. .+..++-...+-.++.. +++. |+|++|+..++..... ....+++.=||+.
T Consensus 36 ~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~--~~~~~Kl~faF~v 112 (187)
T KOG0034|consen 36 YERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK--ASKREKLRFAFRV 112 (187)
T ss_pred HHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC--ccHHHHHHHHHHH
Confidence 4678999999 99999999999988 56677766666666666 5555 9999999999887766 5555699999999
Q ss_pred ccCC--CCcCHHHHHHHHHhh
Q psy15319 79 FDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 79 ~D~~--g~is~~el~~~l~~~ 97 (101)
||.+ |+|+.+|+.+++..+
T Consensus 113 YD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 113 YDLDGDGFISREELKQILRMM 133 (187)
T ss_pred hcCCCCCcCcHHHHHHHHHHH
Confidence 9999 999999999999874
No 11
>KOG0037|consensus
Probab=99.38 E-value=4.5e-12 Score=77.00 Aligned_cols=84 Identities=18% Similarity=0.310 Sum_probs=72.6
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
|+.+|..+|++++|.|+..||+.+|..+|+.++......++.+ .+|.|.|++|+.++... ..+.++|
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L---------~~lt~~F 196 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL---------QRLTEAF 196 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH---------HHHHHHH
Confidence 4789999999999999999999999999999999998888888 48999999999998654 4478999
Q ss_pred HhccCC--CCcC--HHHHHHH
Q psy15319 77 RAFDEG--GVIN--GEKIRGA 93 (101)
Q Consensus 77 ~~~D~~--g~is--~~el~~~ 93 (101)
+..|++ |.|+ .+++.++
T Consensus 197 r~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 197 RRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHhccccceeEEEeHHHHHHH
Confidence 999999 7654 5666554
No 12
>KOG0044|consensus
Probab=99.37 E-value=1.2e-11 Score=74.84 Aligned_cols=93 Identities=16% Similarity=0.274 Sum_probs=75.1
Q ss_pred hHhhhccCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHH-HHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHH
Q psy15319 2 SKGFALMDAD-KDGILGKADLIKIFDTVGKLVTDKEVDD-MLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAA 75 (101)
Q Consensus 2 ~~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~-~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 75 (101)
+.+|+.|=.+ .+|.++.++|+.+++.+....+...+.. ++.. ++|.|+|.||+..++....+ ..++.+.++
T Consensus 29 ~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG---t~eekl~w~ 105 (193)
T KOG0044|consen 29 QQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG---TLEEKLKWA 105 (193)
T ss_pred HHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC---cHHHHhhhh
Confidence 4556666554 5899999999999999987666655544 4444 79999999999999766555 778999999
Q ss_pred HHhccCC--CCcCHHHHHHHHHhh
Q psy15319 76 FRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 76 f~~~D~~--g~is~~el~~~l~~~ 97 (101)
|+.||.| |+||+.|+..++.+.
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHH
Confidence 9999999 999999999888763
No 13
>KOG0044|consensus
Probab=99.32 E-value=2.1e-11 Score=73.73 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=78.8
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcC--------CCCCcH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSG--------GATDDD 69 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~--------~~~~~~ 69 (101)
..+|+.||.+++|.|+..||..+|..+.....++-+.+.|.. ++|+|++.|++.++...+.. ....+.
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~ 146 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPE 146 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHH
Confidence 468999999999999999999999988888888888888777 89999999999988643321 123466
Q ss_pred HHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 70 EVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 70 ~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
+.+..+|+.+|.| |.||.+|+...+..
T Consensus 147 ~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 147 ERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 7788899999999 99999999876643
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.32 E-value=5.4e-12 Score=64.21 Aligned_cols=57 Identities=30% Similarity=0.642 Sum_probs=45.2
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH----HHh----CCCCcCHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDM----LAE----ATGPINFTQLLSLF 57 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~----~~~----~~g~i~~~ef~~~l 57 (101)
|+++|..+|.+++|+|+.+|+..++..++...+..++... +.. ++|.|+|.||+.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4689999999999999999999999999987766555544 333 67777777777653
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.31 E-value=6.3e-12 Score=67.56 Aligned_cols=60 Identities=10% Similarity=0.302 Sum_probs=53.2
Q ss_pred ChHhhhccCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 1 MSKGFALMDA-DKDGILGKADLIKIFDT-VGKLVTD-KEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 1 l~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
+..+|+.||+ +++|+|+..+++.+|.. +|...+. .++..++.. ++|.|+|+||+.++...
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4678999999 99999999999999998 8877777 889999977 78999999999988643
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.29 E-value=1.8e-11 Score=65.72 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=53.6
Q ss_pred ChHhhhccC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 1 MSKGFALMD-ADKDG-ILGKADLIKIFDT-----VGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 1 l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
+.++|+.|| ++++| .|+..+++.+|+. +|..+++.++..++.. ++|.|+|.+|+.++...
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467899998 79999 5999999999998 8999999999999988 78999999999988643
No 17
>PTZ00183 centrin; Provisional
Probab=99.23 E-value=4e-10 Score=65.97 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=76.6
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTV-GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
..+|..+|.+++|.|+..+|..++... ........+..+|.. ++|.|+..||..++... .. ......+..+|
T Consensus 56 ~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~--~l~~~~~~~~~ 132 (158)
T PTZ00183 56 KQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GE--TITDEELQEMI 132 (158)
T ss_pred HHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CC--CCCHHHHHHHH
Confidence 467888999999999999999887643 344566677777776 78999999999998643 33 46678899999
Q ss_pred HhccCC--CCcCHHHHHHHHHhhcc
Q psy15319 77 RAFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~~g~ 99 (101)
..+|.+ |.|+.++|..++....+
T Consensus 133 ~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 133 DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 999988 99999999999876543
No 18
>KOG0036|consensus
Probab=99.19 E-value=2.5e-10 Score=75.10 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=77.8
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKL-VTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAA 75 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 75 (101)
++..|..||.+++|.++..++.+.+.++..+ +.......++.. .+|.++|.||..-+.. .+..+...
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~--------~E~~l~~~ 87 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN--------KELELYRI 87 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH--------hHHHHHHH
Confidence 3678999999999999999999999999887 444555556665 6899999999998843 44669999
Q ss_pred HHhccCC--CCcCHHHHHHHHHhhcc
Q psy15319 76 FRAFDEG--GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 76 f~~~D~~--g~is~~el~~~l~~~g~ 99 (101)
|+.+|.+ |.|+..|+.+.|+.+|+
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi 113 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGI 113 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCC
Confidence 9999999 99999999999999986
No 19
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.18 E-value=2.5e-10 Score=57.98 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=50.1
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
++++|..+|++++|.|+.++++.++..+|. +..++..++.. ++|.|+|.+|+.++...
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 468899999999999999999999998875 77778888777 67999999999988543
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.17 E-value=1.4e-10 Score=63.04 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=50.9
Q ss_pred ChHhhhccCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 1 MSKGFALMDA-DK-DGILGKADLIKIFDT-----VGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 1 l~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
++.+|+.||. ++ +|.|+..+++.+|+. +|..++..++..++.. ++|.|+|.+|+.++..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3678999997 87 699999999999986 5778899999998887 6889999999988854
No 21
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=2.1e-10 Score=62.05 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=50.6
Q ss_pred ChHhhhccC-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 1 MSKGFALMD-ADKDG-ILGKADLIKIFDT-VG----KLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 1 l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
++++|+.|| ++++| .|+..+++.+|+. +| ..++..++..++.. ++|.|+|.+|+.++...
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467999997 99999 5999999999985 44 45788889999888 68899999999988653
No 22
>KOG0027|consensus
Probab=99.10 E-value=1.7e-09 Score=63.43 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=76.0
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCC-----HHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVT-----DKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVV 72 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-----~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 72 (101)
..++...|.+++|.|+..+|..++.......+ ..++...|.. ++|+|+..|+..++...-.. .+.+.+
T Consensus 47 ~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~---~~~~e~ 123 (151)
T KOG0027|consen 47 RDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK---LTDEEC 123 (151)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc---CCHHHH
Confidence 46778899999999999999999987765433 4578888877 89999999999999665433 667889
Q ss_pred HHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 73 VAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 73 ~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
...++.+|.| |.|+..++.+++..
T Consensus 124 ~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 124 KEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 9999999988 99999999888754
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.10 E-value=3.1e-09 Score=62.59 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=76.5
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTV-GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
.++|..+|. +.|.|+..+|..+|... +...+.+++.++|+. ++|+|+..+++.++... .+ ..+.+.+..++
T Consensus 59 ~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge--~~~deev~~ll 134 (160)
T COG5126 59 NKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GE--RLSDEEVEKLL 134 (160)
T ss_pred HHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cc--cCCHHHHHHHH
Confidence 467788888 88999999999998854 466778899999888 89999999999998643 34 57889999999
Q ss_pred HhccCC--CCcCHHHHHHHHHh
Q psy15319 77 RAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~ 96 (101)
+.+|+| |+|+.++|.+.+..
T Consensus 135 ~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 135 KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HhcCCCCCceEeHHHHHHHHhc
Confidence 999987 99999999987754
No 24
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.10 E-value=6e-10 Score=60.73 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=49.7
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
++++|..+|++++|.|+..+++.+|+..+ .+..++..++.. ++|.|+|++|+.++..
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 36789999999999999999999999866 577888888877 6899999999988854
No 25
>PTZ00184 calmodulin; Provisional
Probab=99.09 E-value=4e-09 Score=61.02 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=72.3
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTV-GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
..+|..+|.+++|.|+.++|..++... ........+..+|.. ++|.|+..+|..++... .. ..+.+.+..+|
T Consensus 50 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~--~~~~~~~~~~~ 126 (149)
T PTZ00184 50 QDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GE--KLTDEEVDEMI 126 (149)
T ss_pred HHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CC--CCCHHHHHHHH
Confidence 467899999999999999999888754 333444556666666 68999999999988653 32 35668899999
Q ss_pred HhccCC--CCcCHHHHHHHHH
Q psy15319 77 RAFDEG--GVINGEKIRGAMK 95 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~ 95 (101)
+.+|.+ |.|+.+||..++.
T Consensus 127 ~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 127 READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HhcCCCCCCcCcHHHHHHHHh
Confidence 999988 9999999988764
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=6.6e-10 Score=60.28 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=48.4
Q ss_pred hHhhhccC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 2 SKGFALMD-ADKDG-ILGKADLIKIFDT-V----GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 2 ~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
.++|+.|| ++++| +|+..|++.+|.. + +...+..++..++.. ++|.|+|.||+.++...
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56899999 68998 5999999999975 2 344577788888888 78999999999988653
No 27
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.08 E-value=6.7e-10 Score=59.65 Aligned_cols=58 Identities=17% Similarity=0.404 Sum_probs=50.7
Q ss_pred HhhhccCC-CC-CCcccHHHHHHHHH---HhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 3 KGFALMDA-DK-DGILGKADLIKIFD---TVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 3 ~~f~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
.+|+.||. ++ +|+|+.+||+.+|+ .+|..++..++..++.. ++|+|+|.||+.++...
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 57999998 66 89999999999997 36888999999999987 78999999999888653
No 28
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.04 E-value=7.9e-10 Score=59.26 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=50.3
Q ss_pred ChHhhhccCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 1 MSKGFALMDA--DKDGILGKADLIKIFDT-VGKL----VTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 1 l~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
++.+|..||+ +++|.|+..++..+++. +|.. ++..++..++.. ++|.|+|.+|+.++...
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3578999999 89999999999999985 4543 458888888877 67999999999988654
No 29
>PF14658 EF-hand_9: EF-hand domain
Probab=99.00 E-value=3.3e-09 Score=53.54 Aligned_cols=58 Identities=26% Similarity=0.507 Sum_probs=52.3
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHh----C-CCCcCHHHHHHHHHhh
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGK-LVTDKEVDDMLAE----A-TGPINFTQLLSLFANR 60 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~----~-~g~i~~~ef~~~l~~~ 60 (101)
.+|..||+++.|.|...++..+|++.+. .|++.+++.+.+. + +|.|+++.|+.+|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4799999999999999999999999988 9999999999888 3 4889999999998653
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.00 E-value=3.3e-09 Score=52.33 Aligned_cols=57 Identities=30% Similarity=0.670 Sum_probs=50.4
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLF 57 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l 57 (101)
+..+|..+|.+++|.|+..++..++..++...+...+..++.. ++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3578999999999999999999999999999999988888877 57899999998765
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.97 E-value=5.1e-09 Score=51.12 Aligned_cols=47 Identities=26% Similarity=0.589 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 12 KDGILGKADLIKIFDTVGKL-VTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
++|.|+.++|+.+|..+|.. +++.++..++.. ++|.|+|.||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 36888888888888878888 888888888887 788888888888774
No 32
>KOG0034|consensus
Probab=98.92 E-value=4.9e-08 Score=59.10 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=74.4
Q ss_pred hHhhhccCCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCc--HHH--
Q psy15319 2 SKGFALMDADKDGI-LGKADLIKIFDTVGKLVTDK-EVDDMLAE----ATGPINFTQLLSLFANRMSGGATDD--DEV-- 71 (101)
Q Consensus 2 ~~~f~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~--~~~-- 71 (101)
.++++.|+.+++|. |+.++|.+++.......... .+.-.+.. ++|.|+.+|+..++...... ... .+.
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~--~~~~~~e~~~ 146 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE--NDDMSDEQLE 146 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc--CCcchHHHHH
Confidence 36788999988888 99999999999877766665 45555555 78999999999999877765 333 333
Q ss_pred --HHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 72 --VVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 72 --~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
+...|..+|.+ |+||.+|+..++...
T Consensus 147 ~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 45569999999 999999999988765
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.81 E-value=3.3e-08 Score=53.17 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=46.2
Q ss_pred hHhhhc-cCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 2 SKGFAL-MDADKDG-ILGKADLIKIFDTV-----GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 2 ~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
..+|+. +|++++| .|+..||+.++..- +...+..++..++.. ++|.|+|+||+.++...
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467888 7777865 99999999999865 334566788888877 78899999999887543
No 34
>KOG0040|consensus
Probab=98.76 E-value=5e-08 Score=72.72 Aligned_cols=91 Identities=19% Similarity=0.370 Sum_probs=73.4
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCC--CHH-----HHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLV--TDK-----EVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEV 71 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~-----~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 71 (101)
-+|+.||++++|.++..+|+.+|+++|+.. .+. ++...+.. .+|+|+..+|+..|..+-+.. .-+.+.
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeN-I~s~~e 2335 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETEN-ILSSEE 2335 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccc-ccchHH
Confidence 479999999999999999999999999754 222 56666666 689999999999997664442 334468
Q ss_pred HHHHHHhccCC-CCcCHHHHHHHH
Q psy15319 72 VVAAFRAFDEG-GVINGEKIRGAM 94 (101)
Q Consensus 72 ~~~~f~~~D~~-g~is~~el~~~l 94 (101)
+..||+..|.+ .|||+.++.+.|
T Consensus 2336 IE~AfraL~a~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2336 IEDAFRALDAGKPYVTKEELYQNL 2359 (2399)
T ss_pred HHHHHHHhhcCCccccHHHHHhcC
Confidence 99999999999 999999985543
No 35
>KOG0028|consensus
Probab=98.75 E-value=3.2e-07 Score=53.72 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=76.4
Q ss_pred HhhhccCCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKIFD-TVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFR 77 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~ 77 (101)
++...+|+++.|.|+.++|...+. .++...+..++..+|.. .+|+|++.+|..+...+ .+ .-..+.+....+
T Consensus 73 kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-ge--nltD~El~eMIe 149 (172)
T KOG0028|consen 73 KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GE--NLTDEELMEMIE 149 (172)
T ss_pred HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-Cc--cccHHHHHHHHH
Confidence 455677889999999999999876 66777799999999997 78999999999877544 44 466788999999
Q ss_pred hccCC--CCcCHHHHHHHHHh
Q psy15319 78 AFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 78 ~~D~~--g~is~~el~~~l~~ 96 (101)
.+|.+ |-|+.+||..++..
T Consensus 150 EAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 150 EADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HhcccccccccHHHHHHHHhc
Confidence 99998 99999999988764
No 36
>KOG0030|consensus
Probab=98.74 E-value=4e-08 Score=56.23 Aligned_cols=55 Identities=27% Similarity=0.588 Sum_probs=50.3
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh---CCCCcCHHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE---ATGPINFTQLLSLF 57 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~g~i~~~ef~~~l 57 (101)
+..+.||++++|.|...+++.+|..+|..+++.|+..++.- .+|.|+|+.|+..+
T Consensus 92 egLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 92 EGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHHHHHHHH
Confidence 34578999999999999999999999999999999999887 68999999999866
No 37
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.74 E-value=7.3e-09 Score=44.33 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=25.2
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHh
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTV 28 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~ 28 (101)
++++|+.+|+|++|+|+.+||..+|+.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 3689999999999999999999998764
No 38
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.71 E-value=6.3e-08 Score=54.49 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=31.3
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLF 57 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l 57 (101)
-+|..+|.|++|.|+.+|+..++ ..+.+..+..++.. ++|.||++||..++
T Consensus 52 w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 52 WMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45677777777777777777544 23334444445544 56677777777666
No 39
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.65 E-value=1.8e-08 Score=43.76 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=25.3
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHH-HhC
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFD-TVG 29 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 29 (101)
++.+|+.+|++++|+|+.+||+.+|+ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 46899999999999999999999999 665
No 40
>KOG0031|consensus
Probab=98.65 E-value=1.5e-07 Score=54.81 Aligned_cols=58 Identities=24% Similarity=0.485 Sum_probs=53.8
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
|..+|..||.+++|+|..+.++.+|...|-..+.+++..++.. ..|.++|..|+.++.
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 3578999999999999999999999999999999999999998 589999999999885
No 41
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.64 E-value=1.2e-07 Score=50.87 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=47.7
Q ss_pred hHhhhccCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHh----CCCCcCHHHHHHHHHhhh
Q psy15319 2 SKGFALMDAD--KDGILGKADLIKIFD-TVGKLVT----DKEVDDMLAE----ATGPINFTQLLSLFANRM 61 (101)
Q Consensus 2 ~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~----~~g~i~~~ef~~~l~~~~ 61 (101)
-.+|+.++.. .+|.|+.++++.+|. .++..++ ..++..++.. ++|.|+|++|+.++....
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3578888865 478999999999996 5565565 7888888888 678999999998886543
No 42
>KOG0377|consensus
Probab=98.62 E-value=1.7e-07 Score=62.86 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=75.0
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHh--CCCCcCHHHHHHHHHhhhcCC---------CCCcH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDT-VGKLVTDKEVDDMLAE--ATGPINFTQLLSLFANRMSGG---------ATDDD 69 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~--~~g~i~~~ef~~~l~~~~~~~---------~~~~~ 69 (101)
.+.|+.+|+.++|+|+..++..+|.. +|...++..+..-+.. .+|.+.|.+.+..+..-...+ .....
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~k 546 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNK 546 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhch
Confidence 46799999999999999999999984 4788888877765555 788999999887764211110 01222
Q ss_pred HHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 70 EVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 70 ~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
..+..+|..+|.| |.||.+||++++..++
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~ 577 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLS 577 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHH
Confidence 4578889999999 9999999999988764
No 43
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.57 E-value=3.9e-07 Score=44.33 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=42.7
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCC-CcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGAT-DDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~-~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
.+|.|+.++|..++ ..+.- . .+.+.+..+|..+|.| |+|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~--~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGI--KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTS--SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCC--CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999 55444 4 6778899999999999 99999999998864
No 44
>KOG0041|consensus
Probab=98.56 E-value=8.3e-07 Score=53.92 Aligned_cols=62 Identities=24% Similarity=0.514 Sum_probs=55.1
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcC
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSG 63 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~ 63 (101)
..+|+.+|.+.||+|+..|++.+|.++|-+-+.--+..++.. .+|+|+|.+|+-++......
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag 167 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG 167 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999999888888888 78999999999888655443
No 45
>KOG4223|consensus
Probab=98.48 E-value=4.5e-07 Score=58.37 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=65.7
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCC-CCCcHH-HHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL-VTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGG-ATDDDE-VVVA 74 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~-~~~~~~-~~~~ 74 (101)
++.|+.-|.+++|.++.+||...|..--.+ +..-.+..-+.. ++|+|+++||+.-+....... +..+.. .-.+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~ 245 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQ 245 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHH
Confidence 457899999999999999999887643322 222223333333 899999999999987665421 122222 2234
Q ss_pred HHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 75 AFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 75 ~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
.+..+|+| |+++.+|+++++..-
T Consensus 246 F~~~~DknkDG~L~~dEl~~WI~P~ 270 (325)
T KOG4223|consen 246 FFEFRDKNKDGKLDGDELLDWILPS 270 (325)
T ss_pred HHHHhhcCCCCccCHHHHhcccCCC
Confidence 56777888 999999999887543
No 46
>KOG0038|consensus
Probab=98.46 E-value=6.1e-07 Score=52.00 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=63.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIR 91 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~ 91 (101)
+++.+. ..-|..+..+|-+..+...|++ +.|.++|++|+.+++..... ....-.+.-||+.||-| ++|..+++.
T Consensus 55 ~vp~e~-i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~--APrdlK~~YAFkIYDfd~D~~i~~~DL~ 131 (189)
T KOG0038|consen 55 KVPFEL-IEKMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEM--APRDLKAKYAFKIYDFDGDEFIGHDDLE 131 (189)
T ss_pred eecHHH-HhhChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhh--ChHHhhhhheeEEeecCCCCcccHHHHH
Confidence 344443 3346667778888888888888 99999999999999877655 55556788889999999 999999999
Q ss_pred HHHHhh
Q psy15319 92 GAMKLV 97 (101)
Q Consensus 92 ~~l~~~ 97 (101)
+.+..+
T Consensus 132 ~~l~~l 137 (189)
T KOG0038|consen 132 KTLTSL 137 (189)
T ss_pred HHHHHH
Confidence 988765
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.44 E-value=3.3e-07 Score=39.15 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.8
Q ss_pred HHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 71 VVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 71 ~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
++..+|+.+|+| |+||.+||..++..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 367899999999 999999999998764
No 48
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.41 E-value=6.2e-07 Score=45.30 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=42.3
Q ss_pred HHHHHh----CCCCcCHHHHHHHHHhhhcCC-CCCcHHHHHHHHHhccCC--CCcCHHHHHHHH
Q psy15319 38 DDMLAE----ATGPINFTQLLSLFANRMSGG-ATDDDEVVVAAFRAFDEG--GVINGEKIRGAM 94 (101)
Q Consensus 38 ~~~~~~----~~g~i~~~ef~~~l~~~~~~~-~~~~~~~~~~~f~~~D~~--g~is~~el~~~l 94 (101)
..+|.. ++|.|+.+|+..++....... .....+.+..+|+.+|+| |.|+.+||.+++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 445555 899999999999997654320 023345667779999999 999999998864
No 49
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.40 E-value=4.1e-07 Score=39.38 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=24.3
Q ss_pred HHHHHHHhccCC--CCcCHHHHHHHHH-hhc
Q psy15319 71 VVVAAFRAFDEG--GVINGEKIRGAMK-LVR 98 (101)
Q Consensus 71 ~~~~~f~~~D~~--g~is~~el~~~l~-~~g 98 (101)
++..+|+.+|.| |+|+.+||++++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999 9999999999999 676
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.34 E-value=2.9e-07 Score=37.95 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=22.1
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIF 25 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l 25 (101)
|+++|..+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998754
No 51
>KOG2643|consensus
Probab=98.29 E-value=3.9e-06 Score=56.22 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=63.0
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHh------CC--------CC-CHHHHHHHHHh------CCCCcCHHHHHHHHHhh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTV------GK--------LV-TDKEVDDMLAE------ATGPINFTQLLSLFANR 60 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~------~~--------~~-~~~~~~~~~~~------~~g~i~~~ef~~~l~~~ 60 (101)
+-+|++||.|++|.|+.+||..++..+ |. .. -..++...+.. +++++++++|+.++...
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH
Confidence 346899999999999999997765421 11 00 01122222222 78999999999999654
Q ss_pred hcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 61 ~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
- . +-+..-|..+|++ |.||..+|-.++..+
T Consensus 316 q-~------Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 316 Q-E------EILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred H-H------HHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 2 2 4456669999999 899999999888664
No 52
>PLN02964 phosphatidylserine decarboxylase
Probab=98.26 E-value=4e-06 Score=59.08 Aligned_cols=58 Identities=22% Similarity=0.468 Sum_probs=53.0
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
.++|..+|.+++|.|+.+||..+|..++...+.+++..+|.. ++|.|+++||..++..
T Consensus 182 ~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 182 RRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 577899999999999999999999999888889999999988 7899999999999866
No 53
>KOG0036|consensus
Probab=98.25 E-value=6.6e-06 Score=54.82 Aligned_cols=57 Identities=12% Similarity=0.332 Sum_probs=50.1
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
.++|...|.++||.|+.+|+.+.|+.+|...+.+++.+++.. +++.|+++||...+.
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 467889999999999999999999999999999998887777 678899999998874
No 54
>KOG2562|consensus
Probab=98.20 E-value=7.4e-06 Score=55.21 Aligned_cols=86 Identities=22% Similarity=0.424 Sum_probs=66.7
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--------CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHH
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE--------ATGPINFTQLLSLFANRMSGGATDDDEVVVAA 75 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--------~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 75 (101)
.|-.+|++++|.|+.+++...-.. -.+..-+..+|+. .+|+++|++|+.++..... ......+.-.
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~---k~t~~SleYw 356 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED---KDTPASLEYW 356 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc---CCCccchhhh
Confidence 367789999999999998864432 2345566677773 6899999999999855433 3566779999
Q ss_pred HHhccCC--CCcCHHHHHHHHH
Q psy15319 76 FRAFDEG--GVINGEKIRGAMK 95 (101)
Q Consensus 76 f~~~D~~--g~is~~el~~~l~ 95 (101)
|+.+|.+ |.|+..|++-+..
T Consensus 357 FrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHH
Confidence 9999998 9999999886554
No 55
>KOG4223|consensus
Probab=98.13 E-value=7.5e-06 Score=52.89 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=62.6
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhh------cCCCCCcHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRM------SGGATDDDEV 71 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~------~~~~~~~~~~ 71 (101)
..++..+|.+++|.|+..+++.++..........+....+.. .+|.|+|+++........ .+ ....+.
T Consensus 80 ~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d--~e~~~~ 157 (325)
T KOG4223|consen 80 GKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPD--EEDNEE 157 (325)
T ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcccccc--chhcHH
Confidence 456788999999999999998877644333333333333333 789999999998776431 11 111111
Q ss_pred -------HHHHHHhccCC--CCcCHHHHHHHHH
Q psy15319 72 -------VVAAFRAFDEG--GVINGEKIRGAMK 95 (101)
Q Consensus 72 -------~~~~f~~~D~~--g~is~~el~~~l~ 95 (101)
-+.-|+..|.| |.+|++||..+|.
T Consensus 158 ~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH 190 (325)
T KOG4223|consen 158 YKKMIARDEERFKAADQDGDGSLTLEEFTAFLH 190 (325)
T ss_pred HHHHHHHHHHHHhhcccCCCCcccHHHHHhccC
Confidence 23349999999 9999999988764
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.05 E-value=4.5e-05 Score=41.06 Aligned_cols=57 Identities=21% Similarity=0.397 Sum_probs=41.8
Q ss_pred HhhhccCCCCCCcccHHHHHHHHH-H----hCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 3 KGFALMDADKDGILGKADLIKIFD-T----VGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~-~----~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
.+|+.|.. +.+.++..||+.+|. . ++...+...+..++.. ++|.|+|.||+.++...
T Consensus 12 ~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 12 LTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46888873 456899999999886 2 2334456677777766 78899999998887543
No 57
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.01 E-value=8.5e-05 Score=36.01 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=40.2
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHH
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAM 94 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l 94 (101)
++|.|++.+|..++.... . ..+.+.+..+|+.+|.+ |.|+.+++..++
T Consensus 13 ~~g~l~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 13 GDGTISADELKAALKSLG-E--GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCcCcHHHHHHHHHHhC-C--CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 679999999999986543 3 46778889999999987 999999998765
No 58
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.00 E-value=0.00013 Score=39.46 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=43.0
Q ss_pred CCC-CcCHHHHHHHHHhhh----cCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 44 ATG-PINFTQLLSLFANRM----SGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 44 ~~g-~i~~~ef~~~l~~~~----~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
++| .|+..|+..++.... .. ......+..+++.+|.| |.|+.+||..++..+.
T Consensus 24 gdg~~Is~~EL~~ll~~~~~~~~~~--~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 24 GDRYKLSKGELKELLQRELTDFLSS--QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CCCCEECHHHHHHHHHHHhHHhccc--ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 566 599999999996532 22 34667899999999999 9999999999987764
No 59
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.99 E-value=8.1e-06 Score=33.56 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.1
Q ss_pred HHHHHHhccCC--CCcCHHHHHHHH
Q psy15319 72 VVAAFRAFDEG--GVINGEKIRGAM 94 (101)
Q Consensus 72 ~~~~f~~~D~~--g~is~~el~~~l 94 (101)
+.++|+.+|.| |.||.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 46789999999 999999999864
No 60
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.97 E-value=0.0001 Score=39.86 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCcCHHHHHHHHHhhh----cCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhccC
Q psy15319 45 TGPINFTQLLSLFANRM----SGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~----~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g~~ 100 (101)
+|.|+..|+..++.... .. ..+.+.+..+++.+|.+ |.|+.++|.+++...+++
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~--~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKN--QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhc--cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 58999999999986422 22 34567899999999998 999999999999887764
No 61
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.96 E-value=0.0002 Score=38.88 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
++|.|+.+++..++... ..+.+.+..+|+.+|.+ |+|+.+||..++..+
T Consensus 23 ~~G~Is~~el~~~l~~~-----~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 23 QDGTVTGAQAKPILLKS-----GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCeEeHHHHHHHHHHc-----CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 78999999999998652 34567899999999998 999999999887654
No 62
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.93 E-value=6e-05 Score=40.52 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcH-HHHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDD-EVVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~-~~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
++|.|+..|+..++...+.. ..+. +.+..+++.+|.| |.|+.+||..++..+
T Consensus 22 ~~g~i~~~ELk~ll~~elg~--~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 22 GKESLTASEFQELLTQQLPH--LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred CCCeECHHHHHHHHHHHhhh--hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999763443 2333 7899999999999 999999999888765
No 63
>KOG0377|consensus
Probab=97.89 E-value=5e-05 Score=51.38 Aligned_cols=57 Identities=19% Similarity=0.432 Sum_probs=41.0
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTV----GKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
.-+|+..|.+++|.|+.+||+.++.-+ +...+.+++.++-.. ++|.|++.||+..+.
T Consensus 550 etiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 550 ETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 346888888888888888888877644 345566666655544 688888888887763
No 64
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.87 E-value=0.00029 Score=37.80 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCC-CcCHHHHHHHHHh----hhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 44 ATG-PINFTQLLSLFAN----RMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 44 ~~g-~i~~~ef~~~l~~----~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
++| .|+..|+..++.. .... ..+.+.+..+++.+|+| |.|+.++|..++....
T Consensus 22 gdG~~I~~~eL~~ll~~~~~~~lg~--~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 22 GDKHKLKKSELKELINNELSHFLEE--IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred CCcCEECHHHHHHHHHHHhHHHhcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 678 5999999999976 2344 46678899999999999 9999999998886643
No 65
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.86 E-value=0.00013 Score=39.08 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCCcCHHHHHHHHHhh--hcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 45 TGPINFTQLLSLFANR--MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~--~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
+|.|+..||..++... +.. ..+.+.+.++++.+|.| |.|+..||..++..+.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~--k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGS--KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 6699999999999642 333 56778999999999999 9999999998887654
No 66
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.85 E-value=0.0002 Score=40.35 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=45.1
Q ss_pred CHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 33 TDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 33 ~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
-...+.+.|.. ++|.|+.+|+..+. . ......+...|..+|.| |.||.+|+...+..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-----DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 34456677766 89999999999865 1 24457788899999999 99999999998843
No 67
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.83 E-value=0.00022 Score=35.68 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=41.2
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
++|.|+.+|+..++... ..+.+.+..+|+.+|.+ |.|+..|+..++..+
T Consensus 12 ~~G~i~~~el~~~l~~~-----g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 12 GDGLISGDEARPFLGKS-----GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCcCcHHHHHHHHHHc-----CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 78999999999988553 23667899999999998 999999999887654
No 68
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.82 E-value=0.0001 Score=39.47 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCcCHHHHHHHHHhhhcCC--CCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 45 TGPINFTQLLSLFANRMSGG--ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~--~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
++.|+..|+..++....... ...+...+..+|+.+|.| |.|+.+||.+++....
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 67999999999996433320 023378899999999998 9999999999887653
No 69
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.74 E-value=0.00022 Score=37.98 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCCCcCHHHHHHHHHhhhcCC--CCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGG--ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~--~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
++|.|+..++..++...+... .......+..++..+|.+ |.|+.++|.+++...
T Consensus 23 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 23 DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 568999999999986533210 023468899999999998 999999999988764
No 70
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.72 E-value=0.00069 Score=36.43 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=42.9
Q ss_pred CCC-CcCHHHHHHHHHhhhcCC--CCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 44 ATG-PINFTQLLSLFANRMSGG--ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 44 ~~g-~i~~~ef~~~l~~~~~~~--~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
++| .|+..|+..++...+... ...+.+.+..+|+.+|.| |.|+.++|..++..+.
T Consensus 23 g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 23 GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 788 599999999996422110 024668899999999998 9999999999887654
No 71
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.72 E-value=0.00026 Score=33.96 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 16 LGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 16 i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
++.+|++.+|+.+++.+++..+..+|+. ++|.+..+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 4566667777777776666666666666 566666666666553
No 72
>KOG0751|consensus
Probab=97.70 E-value=0.00039 Score=47.85 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=63.9
Q ss_pred hccCCCCCCcccHHHHHHH-HHHhCCCCCHHHHHHHHHh-----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q psy15319 6 ALMDADKDGILGKADLIKI-FDTVGKLVTDKEVDDMLAE-----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAF 79 (101)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~~~~-----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~ 79 (101)
...+.++....+.++|.+- +.-.+..-...++..++.. .+|-|+|+||+.+-..+ +.+......+|+.|
T Consensus 43 as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l-----C~pDal~~~aFqlF 117 (694)
T KOG0751|consen 43 ASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL-----CAPDALFEVAFQLF 117 (694)
T ss_pred hHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc-----cCchHHHHHHHHHh
Confidence 3446677778899998653 3334444444444444444 78999999999765433 56678889999999
Q ss_pred cCC--CCcCHHHHHHHHHhhc
Q psy15319 80 DEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 80 D~~--g~is~~el~~~l~~~g 98 (101)
|.. |.+|.+++..++..+.
T Consensus 118 Dr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 118 DRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred cccCCCceehHHHHHHHhccc
Confidence 999 9999999999887653
No 73
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.66 E-value=5.3e-05 Score=30.97 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.5
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDT 27 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~ 27 (101)
++++|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 367899999999999999999988864
No 74
>KOG0751|consensus
Probab=97.64 E-value=0.00014 Score=49.94 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=68.1
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC------CCHHHHHHHHHh-CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL------VTDKEVDDMLAE-ATGPINFTQLLSLFANRMSGGATDDDEVVVA 74 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~------~~~~~~~~~~~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 74 (101)
..+|..||+.++|.++.+++..++.....+ .+..-+...|.. ....++|.+|..++..... +...+
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~-------E~~~q 183 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQL-------EHAEQ 183 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHH-------HHHHH
Confidence 457899999999999999999998866542 333444544544 5667999999999865432 34788
Q ss_pred HHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 75 AFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 75 ~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
+|+..|+. |+||.-+++.++.+.
T Consensus 184 afr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 184 AFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHHHhcccCCCeeeeechHhhhhhh
Confidence 99999998 999999998877553
No 75
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.64 E-value=0.0011 Score=35.63 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCC-CcCHHHHHHHHHhhhcCC--CCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 44 ATG-PINFTQLLSLFANRMSGG--ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 44 ~~g-~i~~~ef~~~l~~~~~~~--~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
+++ .|+..||..++....+.- .......+..+++.+|.| |.|+.+||.+++..+.
T Consensus 23 g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 23 GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 444 899999999997653210 034567899999999999 9999999999887764
No 76
>KOG2643|consensus
Probab=97.53 E-value=0.0011 Score=44.96 Aligned_cols=92 Identities=22% Similarity=0.378 Sum_probs=56.2
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHH-H-HHHHHHh---C-CCCcCHHHHHHHHHhhhcC--------------
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDK-E-VDDMLAE---A-TGPINFTQLLSLFANRMSG-------------- 63 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~-~~~~~~~---~-~g~i~~~ef~~~l~~~~~~-------------- 63 (101)
-|..+|+...|.|+..+|..+|-......++. . ...-+.+ . +..|++.||..+.. .++.
T Consensus 323 EF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~-Fl~~l~dfd~Al~fy~~A 401 (489)
T KOG2643|consen 323 EFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFR-FLNNLNDFDIALRFYHMA 401 (489)
T ss_pred HHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHH-HHhhhhHHHHHHHHHHHc
Confidence 37788998889999999988776544322222 1 2222222 2 45799998876652 1100
Q ss_pred CCCCcHH-----------------HHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 64 GATDDDE-----------------VVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 64 ~~~~~~~-----------------~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
....... .+.-+|..||.| |.+|.+||..+++.
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 0011111 223348899988 99999999988865
No 77
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.51 E-value=0.00024 Score=47.75 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHH
Q psy15319 29 GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95 (101)
Q Consensus 29 ~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~ 95 (101)
|....+..+..+|.. ++|.|+.+||+. ...+|..+|.| |.|+.+||.+.+.
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 444444555555554 556666666542 12346666655 6666666666554
No 78
>KOG0038|consensus
Probab=97.50 E-value=0.0025 Score=37.28 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=62.4
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH--HHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHH---
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDM--LAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVA--- 74 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~--~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~--- 74 (101)
+-..|..++.|.++.++|..+++.+....+ .+++.. |.- +++.|--.+....+....++ ..+.+++..
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~AP-rdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~--eLs~eEv~~i~e 152 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAP-RDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD--ELSDEEVELICE 152 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhCh-HHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc--cCCHHHHHHHHH
Confidence 345677889999999999988876643322 222222 222 78889999998888777766 455554443
Q ss_pred -HHHhccCC--CCcCHHHHHHHHHh
Q psy15319 75 -AFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 75 -~f~~~D~~--g~is~~el~~~l~~ 96 (101)
.....|.| |.++.+||.+++..
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHHHh
Confidence 45666777 99999999988764
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.50 E-value=0.00058 Score=32.76 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 48 INFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 48 i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
++|.|...++. .+.= ......+..+|+.+|++ |++..+|+.++++.+
T Consensus 2 msf~Evk~lLk-~~NI--~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLK-MMNI--EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHH-HTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHcc--CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 57888877774 3333 46668899999999999 999999999988764
No 80
>KOG0169|consensus
Probab=97.49 E-value=0.0009 Score=47.89 Aligned_cols=90 Identities=11% Similarity=0.241 Sum_probs=76.2
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFR 77 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~ 77 (101)
..+|...|++++|.++..+...+++.++..+....+..++.+ +++++...+++......... . .+...|.
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-----p-ev~~~f~ 212 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-----P-EVYFLFV 212 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-----c-hHHHHHH
Confidence 467899999999999999999999999999988888888877 78899999999877554322 2 7888888
Q ss_pred hccCC-CCcCHHHHHHHHHhh
Q psy15319 78 AFDEG-GVINGEKIRGAMKLV 97 (101)
Q Consensus 78 ~~D~~-g~is~~el~~~l~~~ 97 (101)
.+-.+ +++|.++|..++...
T Consensus 213 ~~s~~~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 213 QYSHGKEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHhCCCCccCHHHHHHHHHHh
Confidence 88777 999999999998765
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.33 E-value=0.00082 Score=37.17 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=39.8
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
..+|...|+ .+|.|+-.+.+.++...+. +...+..++.. ++|+++++||+-+|.
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S~L--~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKSGL--PRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHTTS--SHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHcCC--CHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 456777775 5788999988888876554 44666666666 788899999977664
No 82
>KOG4065|consensus
Probab=97.23 E-value=0.0016 Score=36.60 Aligned_cols=54 Identities=24% Similarity=0.513 Sum_probs=42.1
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHh------C----CCCCHHHHHHHHHh--------CCCCcCHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTV------G----KLVTDKEVDDMLAE--------ATGPINFTQLLSL 56 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~------~----~~~~~~~~~~~~~~--------~~g~i~~~ef~~~ 56 (101)
..|+++|-+++|.++--|+..++... | ..+++.++..++.. ++|.|+|.||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 35888999999999999998887743 2 23577788777776 6899999999763
No 83
>KOG0035|consensus
Probab=97.22 E-value=0.0016 Score=47.66 Aligned_cols=90 Identities=10% Similarity=0.149 Sum_probs=73.7
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHH-HHHH----HHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDK-EVDD----MLAE----ATGPINFTQLLSLFANRMSGGATDDDEV 71 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~----~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 71 (101)
|+..|+.+++...|.+++.++.++|..+|.....+ .+.. ++.. ..|.+++.+|...|.+.... .+....
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~--l~~~~r 826 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED--LDTELR 826 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh--hcHHHH
Confidence 35779999999999999999999999999887652 2222 2222 24889999999999988887 888899
Q ss_pred HHHHHHhccCC-CCcCHHHHHH
Q psy15319 72 VVAAFRAFDEG-GVINGEKIRG 92 (101)
Q Consensus 72 ~~~~f~~~D~~-g~is~~el~~ 92 (101)
+..+|+.+-++ -+|..+||..
T Consensus 827 ~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 827 AILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred HHHHHHHHHcchhHHHHHHHHh
Confidence 99999999888 8899998876
No 84
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.14 E-value=6.8e-05 Score=42.05 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=20.3
Q ss_pred hhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHH
Q psy15319 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLS 55 (101)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~ 55 (101)
|..+|.|++|.|+..|+..+...+ .+.+.=+..++.. +++.|+..||..
T Consensus 60 F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 60 FCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 555666666666666655433322 2222223333333 455555555543
No 85
>KOG0046|consensus
Probab=97.13 E-value=0.0015 Score=45.21 Aligned_cols=57 Identities=25% Similarity=0.517 Sum_probs=47.3
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLV---TDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
++.|...| +++|+++..++..++...+... ..++++.++.. .+|+|+|++|+.++..
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 56788899 9999999999999999887654 45677777777 6899999999997644
No 86
>KOG4666|consensus
Probab=97.12 E-value=0.0019 Score=42.40 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=66.2
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCH-HHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTD-KEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAF 76 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f 76 (101)
+..|..||.+++|.++..+-...+..+..++.. .-++-.+.. .+|.+.-++|.-++..... -..-.+-..|
T Consensus 262 ~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg----v~~l~v~~lf 337 (412)
T KOG4666|consen 262 APTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG----VEVLRVPVLF 337 (412)
T ss_pred hhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC----cceeeccccc
Confidence 567899999999999999988888777655544 444444444 6888888888777644322 2223355668
Q ss_pred HhccCC--CCcCHHHHHHHHHhhc
Q psy15319 77 RAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~~g 98 (101)
+.++.. |.|+.++|+.+....+
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhCc
Confidence 888776 9999999998876654
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.07 E-value=0.00086 Score=27.09 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=20.9
Q ss_pred HHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 72 VVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 72 ~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
+..+|..+|.+ |.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 56788888888 89999999988765
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.83 E-value=0.012 Score=39.84 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=29.4
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
+.+|+.+|.+++|.|+.+||.. ...+|.. ++|.|+++||..++..
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4567777777778887777731 2333433 6777888877777643
No 89
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.81 E-value=0.015 Score=31.37 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=42.7
Q ss_pred CCCCcCHHHHHHHHHhhh----cCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 44 ATGPINFTQLLSLFANRM----SGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~----~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
..+.++..||..++..-+ +. ......+..+++..|.| |.|+..||..++..+.
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~~--~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLKN--QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456899999999886443 33 45668899999999999 9999999999887654
No 90
>KOG0041|consensus
Probab=96.79 E-value=0.0024 Score=39.21 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.3
Q ss_pred HHHHHHHhccCC--CCcCHHHHHHHHHhhccC
Q psy15319 71 VVVAAFRAFDEG--GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 71 ~~~~~f~~~D~~--g~is~~el~~~l~~~g~~ 100 (101)
.....|..||.+ |+|+..||+.++..+|.+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap 131 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAP 131 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCc
Confidence 366678888888 888888888888888865
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.72 E-value=0.009 Score=31.39 Aligned_cols=59 Identities=7% Similarity=0.239 Sum_probs=44.3
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCC--CCHHHHHHHHHh--------CCCCcCHHHHHHHHHhh
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKL--VTDKEVDDMLAE--------ATGPINFTQLLSLFANR 60 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~--------~~g~i~~~ef~~~l~~~ 60 (101)
|..+|..+.. +.+.++.++|...|+.-... .+...+..++.. ..+.++++.|...|...
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 3567888855 77899999999999855433 477788777777 46889999998888543
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.52 E-value=0.03 Score=30.99 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=42.7
Q ss_pred HHHHHHh---CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 37 VDDMLAE---ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 37 ~~~~~~~---~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
...+|.. .+|.|+-.+...++..- .-+.+.+.++|...|.+ |+++.+||.-.+.-
T Consensus 12 y~~~F~~l~~~~g~isg~~a~~~f~~S-----~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 12 YDQIFQSLDPQDGKISGDQAREFFMKS-----GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHCTSSSTTEEEHHHHHHHHHHT-----TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEeHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4455555 67899999998877532 57779999999999998 99999999866543
No 93
>KOG4251|consensus
Probab=96.39 E-value=0.0095 Score=37.87 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=11.5
Q ss_pred HhhhccCCCCCCcccHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKI 24 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~ 24 (101)
.+|...|-|.+|+|+..++++.
T Consensus 105 viFsKvDVNtDrkisAkEmqrw 126 (362)
T KOG4251|consen 105 VIFSKVDVNTDRKISAKEMQRW 126 (362)
T ss_pred HHHhhcccCccccccHHHHHHH
Confidence 3455555555555555555443
No 94
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.31 E-value=0.014 Score=35.06 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred hhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHH---HHHHhhhcC--------CCC
Q psy15319 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLL---SLFANRMSG--------GAT 66 (101)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~---~~l~~~~~~--------~~~ 66 (101)
..-||+|+||.|.+-|--.-++++|+.+.-+.+..++-. ..+.+.-.-|. .-+.+.... +..
T Consensus 13 vaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGr 92 (174)
T PF05042_consen 13 VAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGR 92 (174)
T ss_pred hceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCc
Confidence 456899999999999999999999998877665554444 12222211121 111111110 011
Q ss_pred CcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 67 DDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 67 ~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
=..+...++|..+++. +.+|..|+.++++.
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 2337799999999986 99999999999865
No 95
>PF14658 EF-hand_9: EF-hand domain
Probab=96.06 E-value=0.071 Score=27.03 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC---CCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG---GVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~---g~is~~el~~~l~~~ 97 (101)
+.|.|.-.++...|...-.. ...+..+..+...+|++ |.|+.+.|..+++.+
T Consensus 11 ~tG~V~v~~l~~~Lra~~~~--~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 11 KTGRVPVSDLITYLRAVTGR--SPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred CCceEeHHHHHHHHHHHcCC--CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 67889999999888666553 45667899999999999 789999999998764
No 96
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.32 E-value=0.018 Score=29.50 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHhccCC-CCcCHHHHHHHHH
Q psy15319 67 DDDEVVVAAFRAFDEG-GVINGEKIRGAMK 95 (101)
Q Consensus 67 ~~~~~~~~~f~~~D~~-g~is~~el~~~l~ 95 (101)
.+.+++..+|+.+-.+ ++||.+||++.|.
T Consensus 3 ~s~eqv~~aFr~lA~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRALAGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHHCTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHHHcCCCcccHHHHHHHcC
Confidence 4568899999999666 9999999998764
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.28 E-value=0.1 Score=27.27 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=42.8
Q ss_pred HHHHHHHh---CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC------CCcCHHHHHHHHHh
Q psy15319 36 EVDDMLAE---ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG------GVINGEKIRGAMKL 96 (101)
Q Consensus 36 ~~~~~~~~---~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~------g~is~~el~~~l~~ 96 (101)
++..+|.. +.+.++.++|..+|...-++ .....+.+..+++.+.++ +.+|.+.|...|..
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~-~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGE-PRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS--TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhcc-ccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 34556666 46789999999999544332 124578888888887432 89999999998854
No 98
>KOG1707|consensus
Probab=95.21 E-value=0.26 Score=35.17 Aligned_cols=100 Identities=20% Similarity=0.352 Sum_probs=62.9
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHH---HHh------CCCCcCHHHHHHHHHhhhcCC------
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFD-TVGKLVTDKEVDDM---LAE------ATGPINFTQLLSLFANRMSGG------ 64 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~---~~~------~~g~i~~~ef~~~l~~~~~~~------ 64 (101)
+.++|...|.++||.++-.|+-..=+ .++.+....++..+ .+. .+..++..-|+.+-.......
T Consensus 197 l~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW 276 (625)
T KOG1707|consen 197 LKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTW 276 (625)
T ss_pred HHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccchh
Confidence 35789999999999999988754322 34555555544433 332 344555555654432211100
Q ss_pred ---------------------------------CCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhccC
Q psy15319 65 ---------------------------------ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 65 ---------------------------------~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g~~ 100 (101)
.....+-+...|..+|.| |-++-.|+..+....+..
T Consensus 277 ~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 277 TILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred hhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 001113477789999999 999999999999887653
No 99
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=0.28 Score=28.65 Aligned_cols=86 Identities=12% Similarity=0.195 Sum_probs=58.9
Q ss_pred CCCcccHHHHHHHHH--HhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCc
Q psy15319 12 KDGILGKADLIKIFD--TVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVI 85 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~--~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~i 85 (101)
-||.++..|...... +-.+..+..++..++.. +...+++-.|...+.+.+.. ....+-+...++....||.+
T Consensus 41 ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~--e~R~eli~~mweIa~ADg~l 118 (148)
T COG4103 41 ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE--EQRLELIGLMWEIAYADGEL 118 (148)
T ss_pred cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHccccc
Confidence 578888888655433 22456677777777666 67789999999999877655 44445566667777666887
Q ss_pred CHHH---HHHHHHhhcc
Q psy15319 86 NGEK---IRGAMKLVRT 99 (101)
Q Consensus 86 s~~e---l~~~l~~~g~ 99 (101)
+..| ++++...+||
T Consensus 119 ~e~Ed~vi~RvAeLLgV 135 (148)
T COG4103 119 DESEDHVIWRVAELLGV 135 (148)
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 7766 5556666665
No 100
>KOG4666|consensus
Probab=95.09 E-value=0.017 Score=38.12 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=41.6
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
++|.++|.|.+..++..-.. ....+.+.-+|+.|+.+ |+++.++|.-+|+.
T Consensus 272 ~tg~~D~re~v~~lavlc~p--~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 272 TTGNGDYRETVKTLAVLCGP--PVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred CCCcccHHHHhhhheeeeCC--CCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 78999999998887654444 56678888899999988 99999888887765
No 101
>KOG4251|consensus
Probab=94.76 E-value=0.049 Score=34.76 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=5.4
Q ss_pred CCCCcCHHHHH
Q psy15319 44 ATGPINFTQLL 54 (101)
Q Consensus 44 ~~g~i~~~ef~ 54 (101)
++|.|+|+||.
T Consensus 153 gDGhvsWdEyk 163 (362)
T KOG4251|consen 153 GDGHVSWDEYK 163 (362)
T ss_pred CCCceehhhhh
Confidence 34555555553
No 102
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.55 E-value=0.15 Score=30.19 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=41.8
Q ss_pred hHhhhcc---CCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALM---DADKDGILGKADLIKIFDTVGK---LVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~---D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
+++|..| -+.+...++...|..+|+-.++ ..+...+.-+|.. +...|+|++|+.+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4555555 3556678999999999996654 4677777777777 3456999999998854
No 103
>KOG2243|consensus
Probab=94.50 E-value=0.1 Score=41.09 Aligned_cols=55 Identities=25% Similarity=0.416 Sum_probs=44.9
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
..|+.+|+++.|.|+..+|.++|.. ..+.++.++.-++.- .+...+|.+|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4588999999999999999999973 345677888777766 577899999987654
No 104
>KOG0040|consensus
Probab=93.89 E-value=0.32 Score=38.59 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=42.5
Q ss_pred CCCCcCHHHHHHHHHhhhcC---C-CCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 44 ATGPINFTQLLSLFANRMSG---G-ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~---~-~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
.+|.+++.+|..++...-.. . +..+...+..+....|++ |+|+..++..++..
T Consensus 2266 k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2266 KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 79999999999998643211 1 245667899999999999 99999999988754
No 105
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=93.78 E-value=0.58 Score=25.50 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=51.8
Q ss_pred CCCcccHHHHHHHHHHhC----C-CCCHHHHHHHHHh-CCC--CcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCC
Q psy15319 12 KDGILGKADLIKIFDTVG----K-LVTDKEVDDMLAE-ATG--PINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGG 83 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~----~-~~~~~~~~~~~~~-~~g--~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g 83 (101)
.||.++..|...+.+.+. . ......+..++.. ... ..+..++...+...... .....-+.-++....-||
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~ia~aDG 92 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALLRPEGLAALLKAAAKLLPP--ELRETAFAVAVDIAAADG 92 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHccC
Confidence 479999999887766553 2 2344566666666 333 45666777666554322 233344455566666668
Q ss_pred CcCHHH---HHHHHHhhcc
Q psy15319 84 VINGEK---IRGAMKLVRT 99 (101)
Q Consensus 84 ~is~~e---l~~~l~~~g~ 99 (101)
.++..| +.++...+|+
T Consensus 93 ~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 93 EVDPEERAVLEKLYRALGL 111 (111)
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 888877 4455555553
No 106
>KOG4578|consensus
Probab=93.61 E-value=0.088 Score=34.94 Aligned_cols=56 Identities=7% Similarity=0.114 Sum_probs=34.9
Q ss_pred hhccCCCCCCcccHHHHHHHHHHhCCCCCHHHH-HHHHHh----CCCCcCHHHHHHHHHhh
Q psy15319 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEV-DDMLAE----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~-~~~~~~----~~g~i~~~ef~~~l~~~ 60 (101)
|..+|+|+++.|...|++-.=+.+......... +.++.. ++..|++.||+..+...
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 788899999999988875433322222222222 233333 67789999998888543
No 107
>KOG0042|consensus
Probab=93.17 E-value=0.28 Score=34.95 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=52.7
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcC
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSG 63 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~ 63 (101)
..|..+|.++.|+++..+..++|+..+...+++.+.+.+.+ -+|.+...||..+++...++
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 46889999999999999999999999988888888888877 48999999999988765444
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=93.12 E-value=0.53 Score=33.87 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=37.3
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHh---CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q psy15319 12 KDGILGKADLIKIFDTVGK--LVTDKEVDDMLAE---ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAF 79 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~---~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~ 79 (101)
+.|.++..+|+...+.+.. .....++..+|.. +++.++.++|..++...-.+ .....+....++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e-~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDE-LDCTLAEAQRIVEEV 84 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCC-cCCCHHHHHHHHHHH
Confidence 3467777777666665532 2245666666666 34567777777777543322 123334445555443
No 109
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=92.60 E-value=0.65 Score=27.07 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=37.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-----------CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccC
Q psy15319 13 DGILGKADLIKIFDTVGKLVTDKEVDDMLAE-----------ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE 81 (101)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-----------~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~ 81 (101)
=+.|++.||.++-.-..+. ...+..++.+ ..+.|+|+-|..+|...+.- ..+.+--..+|..|-.
T Consensus 5 ~~~lsp~eF~qLq~y~eys--~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~--d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYS--TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV--DLPEDLCQHLFLSFQK 80 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT---S--HHHHHHHHHHS--
T ss_pred eeccCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC--CCCHHHHHHHHHHHhC
Confidence 4678999998765533221 1122333333 46689999999999887776 5777778888998865
Q ss_pred C
Q psy15319 82 G 82 (101)
Q Consensus 82 ~ 82 (101)
.
T Consensus 81 ~ 81 (138)
T PF14513_consen 81 K 81 (138)
T ss_dssp -
T ss_pred c
Confidence 4
No 110
>KOG3555|consensus
Probab=92.54 E-value=0.22 Score=33.31 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=39.6
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
+|+.+|.|.+|.++..|+.. +.....+.=++.+|.. .+|.|+-.||...+.
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~----I~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRA----IELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhccccccccccCHHHhhh----hhccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 68889999999999988764 4445555666777777 789999999988773
No 111
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=92.42 E-value=0.3 Score=26.78 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=30.5
Q ss_pred CHHHHHHHHHh--CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc----cCC-CCcCHHHHHHHHHh
Q psy15319 33 TDKEVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAF----DEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 33 ~~~~~~~~~~~--~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~----D~~-g~is~~el~~~l~~ 96 (101)
.+..++.-|.. .+|.+....|-.++.. .++.+-...+|... ... ..||++||..++..
T Consensus 28 ~W~~VE~RFd~La~dG~L~rs~Fg~CIGM------~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 28 GWKEVEKRFDKLAKDGLLPRSDFGECIGM------KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp -HHHHHHHHHHH-BTTBEEGGGHHHHHT--------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCCcccHHHHHHhcCC------cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 45566666665 6777777777766642 23334444444333 223 67777777766654
No 112
>KOG3866|consensus
Probab=92.28 E-value=1.3 Score=29.45 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=49.8
Q ss_pred hhhccCCCCCCcccHHHHHHHHHH----h-CCCCCHHHHHHHHHh---------------CCCCcCHHHHHHHHHhhhcC
Q psy15319 4 GFALMDADKDGILGKADLIKIFDT----V-GKLVTDKEVDDMLAE---------------ATGPINFTQLLSLFANRMSG 63 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~----~-~~~~~~~~~~~~~~~---------------~~g~i~~~ef~~~l~~~~~~ 63 (101)
.|..+|-|++|+++..++..++.. . ...-.++.+..+-.. .+.-|+.+||+..-..+-..
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~ 328 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFN 328 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccC
Confidence 477889999999999999877651 1 222222233222221 46679999999876544322
Q ss_pred CCCCcHHHHHHHHHhccCCCCcCHHHHHHHHH
Q psy15319 64 GATDDDEVVVAAFRAFDEGGVINGEKIRGAMK 95 (101)
Q Consensus 64 ~~~~~~~~~~~~f~~~D~~g~is~~el~~~l~ 95 (101)
.+.+ -|...+...+-|.+|++++=+
T Consensus 329 ---~p~e----~WEtl~q~~~yTeEEL~~fE~ 353 (442)
T KOG3866|consen 329 ---PPKE----EWETLGQKKVYTEEELQQFER 353 (442)
T ss_pred ---Ccch----hhhhhcccccccHHHHHHHHH
Confidence 2222 233444335666777766543
No 113
>KOG2562|consensus
Probab=92.00 E-value=1.3 Score=30.83 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=50.0
Q ss_pred cCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh---hhc---CCCCCcHHHHHHHHH
Q psy15319 8 MDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN---RMS---GGATDDDEVVVAAFR 77 (101)
Q Consensus 8 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~---~~~---~~~~~~~~~~~~~f~ 77 (101)
+-...+|.++.++|...+-++....+..-++-.|.- ++|.++-.|...+... .+. .+.-..++.+-+++.
T Consensus 324 ~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~D 403 (493)
T KOG2562|consen 324 FTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRD 403 (493)
T ss_pred ceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 334567888888888877766555444444433333 7888888876544421 111 111223344555566
Q ss_pred hccCC--CCcCHHHHHH
Q psy15319 78 AFDEG--GVINGEKIRG 92 (101)
Q Consensus 78 ~~D~~--g~is~~el~~ 92 (101)
.+-+. |.||..+|+.
T Consensus 404 MvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 404 MVKPEDENKITLQDLKG 420 (493)
T ss_pred HhCccCCCceeHHHHhh
Confidence 66533 8899988876
No 114
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=91.39 E-value=0.13 Score=29.48 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCc
Q psy15319 12 KDGILGKADLIKIFDTV--GKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVI 85 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~i 85 (101)
.||.++.+|...+...+ ....+..+...+... .....++.+++..+...... .....-+..++...--||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~r~~ll~~l~~ia~ADG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP--EEREDLLRMLIAIAYADGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H--HHHHHHHHHHHHHCTCTTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch--HHHHHHHHHHHHHHhcCCCC
Confidence 47899999987665544 222233333333333 33467777777655332221 22234455667777667888
Q ss_pred CHHH---HHHHHHhhccC
Q psy15319 86 NGEK---IRGAMKLVRTF 100 (101)
Q Consensus 86 s~~e---l~~~l~~~g~~ 100 (101)
+..| +.++...+|+.
T Consensus 114 ~~~E~~~l~~ia~~L~i~ 131 (140)
T PF05099_consen 114 SPEEQEFLRRIAEALGIS 131 (140)
T ss_dssp SCCHHHHHHHHHHHCTS-
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 8766 55666666664
No 115
>KOG1029|consensus
Probab=91.37 E-value=0.28 Score=36.20 Aligned_cols=55 Identities=11% Similarity=0.249 Sum_probs=43.0
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
+.+|+.+|+...|+++-..-+.+|...++ +...+..++.. +||+++-+||.-.|.
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 57899999999999999999988865554 34455555554 899999999976553
No 116
>KOG1707|consensus
Probab=89.26 E-value=1 Score=32.32 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=40.8
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHh-CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLV-TDKEVDDMLAE-ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~-~~g~i~~~ef~~~l~~ 59 (101)
..+|..||.++||.++..++..+....+-.+ ++.-....... ..|.++++-|+..++.
T Consensus 318 ~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 318 VDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHH
Confidence 4679999999999999999999998665433 11100011111 6789999999988854
No 117
>KOG2871|consensus
Probab=89.06 E-value=0.55 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.349 Sum_probs=35.5
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
++++|+.+|+.+.|+|+-.-++.+|..++...++...-.+...
T Consensus 311 ~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~ 353 (449)
T KOG2871|consen 311 LRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQ 353 (449)
T ss_pred HHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcC
Confidence 4689999999999999999999999999977777665555444
No 118
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.02 E-value=2.4 Score=22.94 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCc
Q psy15319 12 KDGILGKADLIKIFDTVG--KLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVI 85 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~i 85 (101)
.||.++..|...+-..+. ...+..+...+... .....++.+|...+...... .....-+..+|+..--||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~l~~L~~vA~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY--EERLELVEALWEVAYADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCCC
Confidence 479999999765543221 23455555555544 45668899998888654322 23334455567777666999
Q ss_pred CHHHHHHH
Q psy15319 86 NGEKIRGA 93 (101)
Q Consensus 86 s~~el~~~ 93 (101)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 99885543
No 119
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=88.66 E-value=1 Score=20.84 Aligned_cols=27 Identities=7% Similarity=0.389 Sum_probs=20.9
Q ss_pred HHHHHHHHhcc---CC-CCcCHHHHHHHHHh
Q psy15319 70 EVVVAAFRAFD---EG-GVINGEKIRGAMKL 96 (101)
Q Consensus 70 ~~~~~~f~~~D---~~-g~is~~el~~~l~~ 96 (101)
..+...|..|- .+ .++++.||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34667787774 45 99999999999864
No 120
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=87.92 E-value=0.21 Score=28.04 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=36.4
Q ss_pred CHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHH
Q psy15319 33 TDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRG 92 (101)
Q Consensus 33 ~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~ 92 (101)
-...+...|.. ++|.++..|+..+.... ..+..-+...|+.+|.| |.||..|...
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-----~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-----MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-----STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-----hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34455566655 78899999988765433 13345678889999988 9999998753
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.81 E-value=2 Score=26.07 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=12.9
Q ss_pred HHHHHHhc-cCCCCcCHHHHHHHH
Q psy15319 72 VVAAFRAF-DEGGVINGEKIRGAM 94 (101)
Q Consensus 72 ~~~~f~~~-D~~g~is~~el~~~l 94 (101)
+..+|... |++|++++++++.+.
T Consensus 141 W~~~y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 141 WGALYILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHcCcCCcEeHHHHhhhc
Confidence 33344444 344777777777653
No 122
>KOG0169|consensus
Probab=85.65 E-value=11 Score=28.03 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=61.7
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh---CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE---ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAF 79 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~ 79 (101)
..|...+...++.+...++......++..+ ++..++.. +.+.++..+++.++... +++.....+...++.+.+
T Consensus 176 ~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~~~~ls~~~L~~Fl~~~-q~e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 176 RLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHGKEYLSTDDLLRFLEEE-QGEDGATLDEAEEIIERY 251 (746)
T ss_pred HHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCCCCccCHHHHHHHHHHh-cccccccHHHHHHHHHHh
Confidence 456666777899999999999888887777 55555555 57789999988888544 332234444455554444
Q ss_pred ---cCC---CCcCHHHHHHHHHh
Q psy15319 80 ---DEG---GVINGEKIRGAMKL 96 (101)
Q Consensus 80 ---D~~---g~is~~el~~~l~~ 96 (101)
... +.++.+.|.+.|..
T Consensus 252 e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 252 EPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred hhhhhccccceecHHHHHHHhcC
Confidence 222 77999999988754
No 123
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.06 E-value=2.1 Score=26.08 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=40.0
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLL 54 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~ 54 (101)
++++|..||++.--..+.+++.++|...++.-+...+...+.. ... +|.+|+
T Consensus 55 fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~yl 113 (179)
T TIGR00624 55 YRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN--DLVEFL 113 (179)
T ss_pred HHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHH
Confidence 3678999999998889999999999877777667666666554 223 777776
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=83.30 E-value=15 Score=26.79 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=36.1
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-CCcCHHHHHHHHHh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-g~is~~el~~~l~~ 96 (101)
+.|.++|.+|..+.. .++.....+..++..+|..+-.+ +.+|.++|..+|..
T Consensus 13 ~~g~l~f~~f~~f~~-~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNR-KFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHH-HhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 457888888876653 33321134667788888888666 78888888888865
No 125
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=83.24 E-value=2.9 Score=22.98 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=35.7
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHHHHHHhh
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLLSLFANR 60 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~~~l~~~ 60 (101)
+.|+.+-. +|.|+..+|..++ |...+++-...+|.. ....|+.+|+..++.+.
T Consensus 34 ~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 34 KRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 44555544 8999999999765 666777777777766 46789999999888654
No 126
>KOG3449|consensus
Probab=81.82 E-value=7.1 Score=21.88 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=40.9
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHH
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSL 56 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 56 (101)
.|.+++..++-..+.++++.+|...|.....+.+..++..-+|+ +.+|.+.-
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKGK-DIEELIAA 57 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcCC-CHHHHHHH
Confidence 45556666667788999999999999999999999999885555 66666543
No 127
>KOG0046|consensus
Probab=81.51 E-value=17 Score=26.22 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=39.2
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
++|+|+..+....+...-..-..-..+.++.+....+.| |.|+.++|..++..
T Consensus 31 ~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 31 QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 789999999988885432110133467788888888888 99999999886544
No 128
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=81.48 E-value=4.6 Score=24.82 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=39.5
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLL 54 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~ 54 (101)
++++|..||+.+--..+.+++.++|.-.|+.-....+...+.. ....=+|.+|+
T Consensus 57 freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~l~~e~Gsf~~fl 117 (188)
T COG2818 57 FREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFL 117 (188)
T ss_pred HHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3688999999999999999999999988876665555554444 33344566555
No 129
>PLN02228 Phosphoinositide phospholipase C
Probab=81.33 E-value=18 Score=26.26 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=40.4
Q ss_pred CHHHHHHHHHh--CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccC-----C-CCcCHHHHHHHHHh
Q psy15319 33 TDKEVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE-----G-GVINGEKIRGAMKL 96 (101)
Q Consensus 33 ~~~~~~~~~~~--~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~-----~-g~is~~el~~~l~~ 96 (101)
...++..++.. +++.++.++|..++...-.+ .....+.+..+|..+.. . |.++.+.|...|..
T Consensus 22 ~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGE-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCC-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 44566666666 45678899988888543222 12445566777776643 2 67899988887743
No 130
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.52 E-value=6.1 Score=20.26 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=6.5
Q ss_pred CCcCHHHHHHHHH
Q psy15319 83 GVINGEKIRGAMK 95 (101)
Q Consensus 83 g~is~~el~~~l~ 95 (101)
+.||++||.+.++
T Consensus 40 ~kIsR~~fvr~lR 52 (70)
T PF12174_consen 40 KKISREEFVRKLR 52 (70)
T ss_pred CCCCHHHHHHHHH
Confidence 5555555554443
No 131
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=78.58 E-value=15 Score=23.80 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=48.2
Q ss_pred CCCcccHHHHHH---HHHHhCCCCCH-HHHHHHHHh-CCCCcCHHHHHHHHHhhhcCCCCCcHHH----HHHHHHhccCC
Q psy15319 12 KDGILGKADLIK---IFDTVGKLVTD-KEVDDMLAE-ATGPINFTQLLSLFANRMSGGATDDDEV----VVAAFRAFDEG 82 (101)
Q Consensus 12 ~~g~i~~~e~~~---~l~~~~~~~~~-~~~~~~~~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~----~~~~f~~~D~~ 82 (101)
.||.++..|+.. ++..++..... ..+..++.. .....++.+|+..+...... .... +.-.|+..=-|
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~----r~~l~~~lL~~l~~vA~AD 143 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGG----RFDLLRMFLEIQIQAAFAD 143 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHhc
Confidence 489999999862 23333443322 226667766 45568899999888665432 1122 23334444344
Q ss_pred CCcCHHH---HHHHHHhhcc
Q psy15319 83 GVINGEK---IRGAMKLVRT 99 (101)
Q Consensus 83 g~is~~e---l~~~l~~~g~ 99 (101)
|.++..| +.++...+|+
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgi 163 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGF 163 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 8788766 4445455554
No 132
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=78.27 E-value=8.6 Score=20.69 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHH---HHHhCCCC-CHHHHHHHHHh-CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCcC
Q psy15319 12 KDGILGKADLIKI---FDTVGKLV-TDKEVDDMLAE-ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVIN 86 (101)
Q Consensus 12 ~~g~i~~~e~~~~---l~~~~~~~-~~~~~~~~~~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~is 86 (101)
.||.++..|...+ +....... ...++..++.. .....++.+|...+.............-+..++...--||.++
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~ADG~~~ 91 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYADGELS 91 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4899999997554 44433211 23445555555 3334788999888866532100222344555566665569999
Q ss_pred HHHHH
Q psy15319 87 GEKIR 91 (101)
Q Consensus 87 ~~el~ 91 (101)
..|-.
T Consensus 92 ~~E~~ 96 (106)
T cd07316 92 EAERE 96 (106)
T ss_pred HHHHH
Confidence 88744
No 133
>KOG1955|consensus
Probab=76.15 E-value=9.8 Score=27.24 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=36.1
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
.|+..-++-.|+|+-.-.+..+.+-.+ .-.|+..++.. .+|.+++.||++.+..
T Consensus 236 QFrtvQpDp~gfisGsaAknFFtKSkl--pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 236 QFRTVQPDPHGFISGSAAKNFFTKSKL--PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhhcccCCcccccccHHHHhhhhhccC--chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 356666677778777777776664443 34556666665 6788888888887753
No 134
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=76.11 E-value=4.3 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDM 40 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 40 (101)
.|+.++|..+|+......+..++..+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47889999999988888888887754
No 135
>KOG4347|consensus
Probab=75.91 E-value=8.2 Score=28.28 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG 82 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~ 82 (101)
.+|-++|.+++..+...... +..+.+.-.|+.+|++
T Consensus 568 ~~g~Ltf~~lv~gL~~l~~~---~~~ek~~l~y~lh~~p 603 (671)
T KOG4347|consen 568 MTGLLTFKDLVSGLSILKAG---DALEKLKLLYKLHDPP 603 (671)
T ss_pred CcceeEHHHHHHHHHHHHhh---hHHHHHHHHHhhccCC
Confidence 46677777777777554433 4446666667777766
No 136
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=75.70 E-value=4.1 Score=15.72 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=11.2
Q ss_pred CCCCCCcccHHHHHH
Q psy15319 9 DADKDGILGKADLIK 23 (101)
Q Consensus 9 D~~~~g~i~~~e~~~ 23 (101)
|-|++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 568899999888764
No 137
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=74.15 E-value=9.6 Score=19.22 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
-|+.+-++..+...|..|++..+..+...
T Consensus 31 pine~mir~M~~QMG~kpSekqi~Q~m~~ 59 (64)
T PF03672_consen 31 PINEKMIRAMMMQMGRKPSEKQIKQMMRS 59 (64)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 57778888888888999998888876543
No 138
>KOG1264|consensus
Probab=72.68 E-value=9 Score=29.21 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHH-HHHHHHHh---CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhc
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDK-EVDDMLAE---ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAF 79 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~---~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~ 79 (101)
.+-..|.+....|+..+++..|...++..+.. .+..-+.+ ..+.++|.+|-.+....+-+............|-.-
T Consensus 149 ~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~ 228 (1267)
T KOG1264|consen 149 QIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILG 228 (1267)
T ss_pred hheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhc
Confidence 34445666667799999999888777766543 33233333 788999999988776655431011111122222222
Q ss_pred cC---C-CCcCHHHHHHHHHh
Q psy15319 80 DE---G-GVINGEKIRGAMKL 96 (101)
Q Consensus 80 D~---~-g~is~~el~~~l~~ 96 (101)
.+ + -.++..+|+++|..
T Consensus 229 ~~~~~d~~vV~~~ef~rFL~~ 249 (1267)
T KOG1264|consen 229 NTDRPDASVVYLQEFQRFLIH 249 (1267)
T ss_pred CCCCccceEeeHHHHHHHHHh
Confidence 22 2 67899999988853
No 139
>KOG2871|consensus
Probab=71.29 E-value=5.3 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHhccCC--CCcCHHHHHHHHHhhc
Q psy15319 66 TDDDEVVVAAFRAFDEG--GVINGEKIRGAMKLVR 98 (101)
Q Consensus 66 ~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~~g 98 (101)
..+.++++++|+.+|+. |+||-.-+++++..++
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 35668999999999998 9999999999988765
No 140
>KOG1265|consensus
Probab=71.25 E-value=45 Score=25.97 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=47.6
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh------C-----CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHh
Q psy15319 10 ADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE------A-----TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRA 78 (101)
Q Consensus 10 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~------~-----~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~ 78 (101)
-+..|.|....+.+.+.+-. .+..+.+.+.. . ....+++.|..++.. .-+...+..+|..
T Consensus 159 vn~~grip~knI~k~F~~~k---~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~k------lcpR~eie~iF~k 229 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSADK---KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNK------LCPRPEIEEIFRK 229 (1189)
T ss_pred ccccccccHHHHHHHhhcCC---chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHh------cCCchhHHHHHHH
Confidence 35567777766655554222 12333333333 1 123456666655533 2334679999999
Q ss_pred ccCC--CCcCHHHHHHHHHh
Q psy15319 79 FDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 79 ~D~~--g~is~~el~~~l~~ 96 (101)
+..+ -|+|.++|..+|..
T Consensus 230 i~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 230 ISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred hccCCCccccHHHHHHHHhh
Confidence 9877 89999999998864
No 141
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=70.89 E-value=13 Score=20.13 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHHhccCC-CCcCHHHHHHHHHh
Q psy15319 70 EVVVAAFRAFDEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 70 ~~~~~~f~~~D~~-g~is~~el~~~l~~ 96 (101)
++.+.+|+.+..+ |.++...|..+|..
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 5677788888544 88888887777755
No 142
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=70.56 E-value=2.2 Score=26.19 Aligned_cols=54 Identities=11% Similarity=0.258 Sum_probs=39.6
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLL 54 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~ 54 (101)
++++|..||++.--..+.+++.++|...++.-+...+...+.. ....-+|.+|+
T Consensus 56 fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 56 YRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFV 116 (187)
T ss_pred HHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3678999999988888999999999877766666666655554 22334777766
No 143
>KOG3555|consensus
Probab=69.61 E-value=5.9 Score=26.91 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHH
Q psy15319 32 VTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAM 94 (101)
Q Consensus 32 ~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l 94 (101)
+=+.++.+||.. .++.++..|...+.. .-.+.-++..|-.+|.. |.||..|..-.+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-------DKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc-------cCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 345788999998 688999999887663 23446788889999887 999998876444
No 144
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=69.54 E-value=3.6 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=15.8
Q ss_pred HhccCC--CCcCHHHHHHHHHh
Q psy15319 77 RAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~ 96 (101)
+.||.. .|||.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 467777 88999999888764
No 145
>KOG1955|consensus
Probab=69.51 E-value=4.1 Score=29.01 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.3
Q ss_pred ChHhhhccCCCCCCcccHHHHHHHHH
Q psy15319 1 MSKGFALMDADKDGILGKADLIKIFD 26 (101)
Q Consensus 1 l~~~f~~~D~~~~g~i~~~e~~~~l~ 26 (101)
|.++|...|-++||.++..||..++.
T Consensus 267 LshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 267 LSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhcccCccccccHHHHHhhHh
Confidence 46789999999999999999998877
No 146
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=69.51 E-value=15 Score=19.61 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHh---CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHHh
Q psy15319 32 VTDKEVDDMLAE---ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 32 ~~~~~~~~~~~~---~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~~ 96 (101)
+++.+....... ..-.|.+.+|...+...-.- .+..+...+=..+|.- |+||.-||.-..+-
T Consensus 4 ITK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~---~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPI---SSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS-----SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCC---CchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 445555555555 34457777777777544322 3323333333445544 77777776554443
No 147
>PRK00523 hypothetical protein; Provisional
Probab=67.57 E-value=16 Score=18.93 Aligned_cols=28 Identities=4% Similarity=0.274 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDMLA 42 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 42 (101)
-|+.+-++..+...|..|++..++.+..
T Consensus 39 pine~mir~M~~QMGqKPSekki~Q~m~ 66 (72)
T PRK00523 39 PITENMIRAMYMQMGRKPSESQIKQVMR 66 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 5677777777888888888888776654
No 148
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=66.50 E-value=7.8 Score=20.52 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-CCc---CHHHHHHHHH
Q psy15319 46 GPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-GVI---NGEKIRGAMK 95 (101)
Q Consensus 46 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-g~i---s~~el~~~l~ 95 (101)
..++|.+.+..+.+.+++ ....||..-|.+ ..| |-+|++.++.
T Consensus 21 ~~L~F~DvL~~I~~vlp~-------aT~tAFeYEDE~gDRITVRSDeEm~AMls 67 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPE-------ATTTAFEYEDEDGDRITVRSDEEMKAMLS 67 (91)
T ss_pred ccccHHHHHHHHHHhccc-------ccccceeeccccCCeeEecchHHHHHHHH
Confidence 458999999999887665 256788888887 555 4578887764
No 149
>KOG0506|consensus
Probab=66.36 E-value=34 Score=24.55 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=35.0
Q ss_pred hhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh------------CCCCcCHHHHHHHH
Q psy15319 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE------------ATGPINFTQLLSLF 57 (101)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~------------~~g~i~~~ef~~~l 57 (101)
|..|-..+.+.++.-.|..+|++.|+..+...+..++.. ....++.+-|..++
T Consensus 92 FyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 92 FYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 444433445778888888888888887777666666655 12456667676654
No 150
>KOG4347|consensus
Probab=66.24 E-value=7.4 Score=28.50 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=32.3
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
+++|..+|.+.+|.|+..++...|..+.....-+.+..++..
T Consensus 558 ~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~l 599 (671)
T KOG4347|consen 558 ERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKL 599 (671)
T ss_pred HHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 578999999999999999999988877655544444444444
No 151
>PLN02230 phosphoinositide phospholipase C 4
Probab=66.04 E-value=32 Score=25.26 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=38.7
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHh-----------CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL---VTDKEVDDMLAE-----------ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~-----------~~g~i~~~ef~~~l~~ 59 (101)
..+|..+-.++ +.++.++|...|...+.. .+......++.. ..+.++.+.|...|..
T Consensus 32 ~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 32 RDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 56777774444 799999999999977642 245555555543 2345899999887743
No 152
>KOG4578|consensus
Probab=65.79 E-value=8.4 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=36.8
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC--CCcCHHHHHHHHH
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~--g~is~~el~~~l~ 95 (101)
.++.|.-.||-.+-....+. ..+..-.+..|+++|.| ..||.+|++..|.
T Consensus 346 ~nn~i~rrEwKpFK~~l~k~--s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 346 SNNDIERREWKPFKRVLLKK--SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred ccCccchhhcchHHHHHHhh--ccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 56778877765544333333 45667788899999999 8999999987664
No 153
>KOG1029|consensus
Probab=65.07 E-value=3.7 Score=30.84 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.3
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTV 28 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~ 28 (101)
..+|..-|.|+||.++..||..+|+-+
T Consensus 52 aqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 52 AQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred HHHHHhhhcCccccchHHHHHHHHHHH
Confidence 467888999999999999999988743
No 154
>COG5562 Phage envelope protein [General function prediction only]
Probab=63.87 E-value=7.2 Score=22.71 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHh
Q psy15319 13 DGILGKADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFAN 59 (101)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~ 59 (101)
+|.|...-.+.+.. .....+..-+...... ..|.++|+||+..+..
T Consensus 54 ~~~Il~~g~k~~~~-V~~~~n~~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 54 DGVILIKGVKKVVG-VAEVFNTTLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CCEEEeeccccccc-eecccCHHHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 34444444443322 2233445555555555 7899999999988753
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=61.64 E-value=42 Score=24.60 Aligned_cols=56 Identities=11% Similarity=0.248 Sum_probs=38.4
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC--CCHHHHHHHHHh-----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL--VTDKEVDDMLAE-----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~-----~~g~i~~~ef~~~l~~ 59 (101)
..+|..+.. ++.++.++|...|...... .+.+.+..++.. ..+.++++.|...|..
T Consensus 28 ~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 28 KTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 456666643 4689999998888866543 355666666664 4567888888887754
No 156
>KOG0039|consensus
Probab=61.20 E-value=19 Score=26.54 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=33.1
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-CCcCHHHHHHHHHh
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-g~is~~el~~~l~~ 96 (101)
++ ++++||. ... .+.+..+...|..+|.. |.++.+++..++..
T Consensus 2 ~~-~~~~~~~------~~~--~~~d~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 45 (646)
T KOG0039|consen 2 EG-ISFQELK------ITD--CSYDDKLQTFFDMYDKGDGKLTEEEVRELIMS 45 (646)
T ss_pred CC-cchhhhc------ccC--CChhHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 45 7888877 334 56778888888888888 99999888877754
No 157
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=60.75 E-value=13 Score=21.18 Aligned_cols=27 Identities=33% Similarity=0.674 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHh----CCCCcCHHHHHHHHH
Q psy15319 32 VTDKEVDDMLAE----ATGPINFTQLLSLFA 58 (101)
Q Consensus 32 ~~~~~~~~~~~~----~~g~i~~~ef~~~l~ 58 (101)
+++++++.++.+ ..|++.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 467778888877 689999999998764
No 158
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=59.71 E-value=13 Score=15.90 Aligned_cols=17 Identities=6% Similarity=0.050 Sum_probs=12.6
Q ss_pred CcCHHHHHHHHHhhccC
Q psy15319 84 VINGEKIRGAMKLVRTF 100 (101)
Q Consensus 84 ~is~~el~~~l~~~g~~ 100 (101)
.++..+++..+...|+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46777888888887764
No 159
>PRK08181 transposase; Validated
Probab=59.27 E-value=33 Score=22.30 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHH
Q psy15319 13 DGILGKADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFA 58 (101)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~ 58 (101)
...|+.+.+...|+.++.+--...+...... ..+..+|.||+..+.
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a~~~~~~~~e~L~~ll 50 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQADKEGWPAARFLAAIA 50 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 4678888899899999887655555555544 567899999998875
No 160
>PRK01844 hypothetical protein; Provisional
Probab=59.25 E-value=24 Score=18.25 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDMLA 42 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 42 (101)
-|+.+-++..+...|..|++..+..+..
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~ 65 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMS 65 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 5677777777888888888888776654
No 161
>KOG0998|consensus
Probab=58.90 E-value=2.9 Score=31.58 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~ 59 (101)
.++|...|++++|.|+..+....+.. .......+...+.. +.+.+++.+|...+..
T Consensus 286 ~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 286 SKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 35788899999999999998887765 44455555555555 6788999888766643
No 162
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=58.80 E-value=9.1 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCC--CCcCHHHHHHHHHhhccC
Q psy15319 70 EVVVAAFRAFDEG--GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 70 ~~~~~~f~~~D~~--g~is~~el~~~l~~~g~~ 100 (101)
+..+.+|..||+. -..|.+++.+++..-||+
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 6689999999999 889999999999998886
No 163
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=58.25 E-value=14 Score=17.17 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.4
Q ss_pred CCcCHHHHHHHHHhhccCC
Q psy15319 83 GVINGEKIRGAMKLVRTFE 101 (101)
Q Consensus 83 g~is~~el~~~l~~~g~~~ 101 (101)
..+|-+|+++.|..+|+++
T Consensus 4 ~~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 4 DRLSDAELRAELKQYGLPP 22 (44)
T ss_pred hHcCHHHHHHHHHHcCCCC
Confidence 4578889999999999763
No 164
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=57.05 E-value=12 Score=16.14 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=12.3
Q ss_pred CcCHHHHHHHHHhhccC
Q psy15319 84 VINGEKIRGAMKLVRTF 100 (101)
Q Consensus 84 ~is~~el~~~l~~~g~~ 100 (101)
.++..|+++.+...|+.
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 45677888888888764
No 165
>KOG4004|consensus
Probab=55.97 E-value=8 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=14.3
Q ss_pred HhhhccCCCCCCcccHHHHHHH
Q psy15319 3 KGFALMDADKDGILGKADLIKI 24 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~ 24 (101)
..|...|.++||+|+..++...
T Consensus 226 ~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 226 RFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred hhhhcccCCCCCceeHHHhhcc
Confidence 3456667777777777776643
No 166
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=55.04 E-value=48 Score=20.47 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHH
Q psy15319 12 KDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLS 55 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~ 55 (101)
.||.|+.+|-..+...++......+.+..+.. =...++..+...
T Consensus 92 ADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P~d~~~la~ 136 (188)
T PF04391_consen 92 ADGHIDEEERQRIEGALQELGLDAEERAWLQAELAAPLDPDALAA 136 (188)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 46777777777766655443223333333333 344455554443
No 167
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=54.22 E-value=2.7 Score=25.65 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=37.6
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHHHHH
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLLSLF 57 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~~~l 57 (101)
+++|..||++.--..+.+++.++|..-++.-+...+..++.. ....-+|.+|+--+
T Consensus 52 r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~~~l~i~~e~gsF~~ylw~f 114 (179)
T PF03352_consen 52 REAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNARAILKIQEEFGSFSDYLWSF 114 (179)
T ss_dssp HHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHC
T ss_pred HHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 678999999888888999999998877777777777766655 23334777766543
No 168
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=53.44 E-value=28 Score=17.19 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=21.6
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 14 GILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 14 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
..+|.+|+...+..++-.++..++..++..
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQ 37 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 457777888888878777777777666544
No 169
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=52.56 E-value=12 Score=19.28 Aligned_cols=22 Identities=23% Similarity=0.693 Sum_probs=18.7
Q ss_pred HHHHHhccCC-----CCcCHHHHHHHH
Q psy15319 73 VAAFRAFDEG-----GVINGEKIRGAM 94 (101)
Q Consensus 73 ~~~f~~~D~~-----g~is~~el~~~l 94 (101)
..||..|++| |.++.+++.+-+
T Consensus 44 ~SAYSVFN~~~~~i~Gtl~aE~~erei 70 (71)
T PF10260_consen 44 LSAYSVFNKGCERIPGTLTAEQFEREI 70 (71)
T ss_pred ccchhhhCCCccccCCCCCHHHHHHhh
Confidence 6789999988 999999987654
No 170
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.44 E-value=32 Score=17.68 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDMLA 42 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 42 (101)
-|+.+-++..+...|..|++..+..+..
T Consensus 38 pine~~iR~M~~qmGqKpSe~kI~Qvm~ 65 (71)
T COG3763 38 PINEEMIRMMMAQMGQKPSEKKINQVMR 65 (71)
T ss_pred CCCHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4666666777777777777777666543
No 171
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=52.06 E-value=28 Score=18.16 Aligned_cols=40 Identities=8% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHHHHHh--CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcc
Q psy15319 36 EVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFD 80 (101)
Q Consensus 36 ~~~~~~~~--~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D 80 (101)
.+..++.. ..|.+||.+....+... ....+.+..+|..+.
T Consensus 8 ~i~~Li~~gK~~G~lT~~eI~~~L~~~-----~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 8 AIKKLIEKGKKKGYLTYDEINDALPED-----DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHHHHHSS-BHHHHHHH-S-S--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHcCcc-----CCCHHHHHHHHHHHH
Confidence 34444444 56778888777766321 233455666665553
No 172
>PLN02228 Phosphoinositide phospholipase C
Probab=51.99 E-value=80 Score=23.15 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=39.1
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC--CCHHHHHHHHHh--------CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL--VTDKEVDDMLAE--------ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~--------~~g~i~~~ef~~~l~~ 59 (101)
..+|..+-. ++.++.++|...|...... .+...+..++.. ..+.++.+.|...|..
T Consensus 27 ~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 27 KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 456666643 3689999999999876532 445556666665 2357999999888854
No 173
>PHA02335 hypothetical protein
Probab=51.57 E-value=42 Score=18.79 Aligned_cols=33 Identities=6% Similarity=0.205 Sum_probs=22.7
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCc
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVI 85 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~i 85 (101)
+...|+++||..-+.+. ..+.+.|+.|...|.+
T Consensus 21 np~sVt~ddf~~DlkRi---------~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 21 NPQSVTYDDFEEDLKRF---------KYIKRLFKRYLNTGEL 53 (118)
T ss_pred CcccccHHHHHHHHHHH---------HHHHHHHHhhcCCCCh
Confidence 46789999998888553 4466677777655433
No 174
>KOG0871|consensus
Probab=51.10 E-value=15 Score=21.82 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=17.0
Q ss_pred hccCC--CCcCHHHHHHHHHhhccC
Q psy15319 78 AFDEG--GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 78 ~~D~~--g~is~~el~~~l~~~g~~ 100 (101)
.+++. .+|..+++...|..+|..
T Consensus 58 ic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 58 ICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHhHHhcccCCHHHHHHHHHHcchH
Confidence 45555 788888888888888753
No 175
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=50.91 E-value=48 Score=20.30 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.8
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 10 ADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 10 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
.+.+|+++.+++.+.++.-+...+.+.+..++..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 4678999999999888765667888888888877
No 176
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=50.66 E-value=34 Score=17.38 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 18 KADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 18 ~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
..++..++...|...+..++..++..
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCC
Confidence 34555555555666666666555555
No 177
>PF14164 YqzH: YqzH-like protein
Probab=50.31 E-value=34 Score=17.28 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=21.1
Q ss_pred HHHHHHHHhccCC---CCcCHHHHHHHHHhh
Q psy15319 70 EVVVAAFRAFDEG---GVINGEKIRGAMKLV 97 (101)
Q Consensus 70 ~~~~~~f~~~D~~---g~is~~el~~~l~~~ 97 (101)
..+.+.|++|..| -.+|..|++.+...+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 4577889999777 778888888776543
No 178
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=49.88 E-value=47 Score=18.76 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=25.3
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 10 ADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 10 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
..++..+|.+++..+|.+.|.......+..++..
T Consensus 14 lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~ 47 (112)
T PTZ00373 14 LGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKS 47 (112)
T ss_pred HcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 3455568888899999988888877777666555
No 179
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=49.77 E-value=20 Score=15.70 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=12.1
Q ss_pred CHHHHHHHHHhhccC
Q psy15319 86 NGEKIRGAMKLVRTF 100 (101)
Q Consensus 86 s~~el~~~l~~~g~~ 100 (101)
|.++|+..|...|++
T Consensus 5 s~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIP 19 (38)
T ss_pred CHHHHHHHHHHcCCC
Confidence 567888888888875
No 180
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=48.83 E-value=44 Score=20.49 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=21.6
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 9 DADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 9 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
..+.+|+++.+++.+.+..-+...+.+++..++..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 34678899998888887766666778888887766
No 181
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=48.26 E-value=82 Score=21.22 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=33.0
Q ss_pred cCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHH---HHHHHHHhh
Q psy15319 8 MDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFT---QLLSLFANR 60 (101)
Q Consensus 8 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~---ef~~~l~~~ 60 (101)
|.+.++|.++..++.+++- .-..+.+|+.+.+..+.|.+.|- ++..+..+.
T Consensus 211 fspersG~lP~~dlv~lcf--Sgk~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~ 264 (358)
T COG3426 211 FSPERSGTLPTGDLVRLCF--SGKYTEEELLKKITGKGGLVAYLGTNDAKEVERRI 264 (358)
T ss_pred CCcccCCCCChHHHHHHHh--cCcccHHHHHHHhhcCCceEEEeccchHHHHHHHH
Confidence 4567889999999988774 44567777777766655544442 444444333
No 182
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=47.36 E-value=60 Score=19.32 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=19.6
Q ss_pred HHHHHHHHhccCC-CCcCHHHHHHHHHhhccC
Q psy15319 70 EVVVAAFRAFDEG-GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 70 ~~~~~~f~~~D~~-g~is~~el~~~l~~~g~~ 100 (101)
..+..+.+..... |+|+.+.+..+-..+|+.
T Consensus 23 ~~li~~L~~vQ~~~G~Ip~e~~~~iA~~l~v~ 54 (156)
T PRK05988 23 GALLPILHAIQDEFGYVPEDAVPVIAEALNLS 54 (156)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC
Confidence 3445555555433 788887777777777764
No 183
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=47.21 E-value=36 Score=20.27 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC----CCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG----GVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~----g~is~~el~~~l~~~ 97 (101)
.+|.|+|+.+...=...++. ..-.+...|...+.. ..+|.+|+.+.+..+
T Consensus 65 ~NGnidye~ls~~eqee~k~----~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eAL 118 (162)
T PF12207_consen 65 KNGNIDYEKLSKEEQEEYKK----LTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEAL 118 (162)
T ss_dssp TTS-B-GGGS-HHHHHHHHH----HHHHHHHHHHHHTT---HHHHS-HHHHHHHHHHH
T ss_pred cCCCcCHHhCCHHHHHHHHH----HHHhcchHHHHhcCCcchhhhcCHHHHHHHHHHH
Confidence 57778877654332211110 112244556666443 556777776665543
No 184
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=47.11 E-value=25 Score=14.93 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=10.4
Q ss_pred CCCcCHHHHHHHHHh
Q psy15319 45 TGPINFTQLLSLFAN 59 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~ 59 (101)
.+.|++.+++.+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 467777777776654
No 185
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=45.35 E-value=44 Score=17.23 Aligned_cols=33 Identities=3% Similarity=0.044 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHhccCCCCcCHHHHHHHHHhhcc
Q psy15319 67 DDDEVVVAAFRAFDEGGVINGEKIRGAMKLVRT 99 (101)
Q Consensus 67 ~~~~~~~~~f~~~D~~g~is~~el~~~l~~~g~ 99 (101)
...+++..+|...-..+..|..|++.+...+|-
T Consensus 36 ~~yedl~diy~~V~~K~~fS~sEm~aI~~ELG~ 68 (71)
T PF06569_consen 36 EKYEDLKDIYEMVMSKDSFSPSEMQAIAEELGQ 68 (71)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 444678888888766688999999999888873
No 186
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=45.05 E-value=46 Score=17.30 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=6.7
Q ss_pred CCCCCHHHHHHHHHh
Q psy15319 29 GKLVTDKEVDDMLAE 43 (101)
Q Consensus 29 ~~~~~~~~~~~~~~~ 43 (101)
|.+.+.+.+...+..
T Consensus 53 G~~~~~~~i~~~l~~ 67 (86)
T PF10437_consen 53 GCPYDREAIKEALNS 67 (86)
T ss_dssp TCBSSHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHH
Confidence 444444444444443
No 187
>PLN02222 phosphoinositide phospholipase C 2
Probab=44.85 E-value=1.3e+02 Score=22.29 Aligned_cols=61 Identities=7% Similarity=0.086 Sum_probs=39.5
Q ss_pred HHHHHHHHh--CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccC--C-CCcCHHHHHHHHHh
Q psy15319 35 KEVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE--G-GVINGEKIRGAMKL 96 (101)
Q Consensus 35 ~~~~~~~~~--~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~--~-g~is~~el~~~l~~ 96 (101)
.++..++.. +++.++.++|..+|...-.+ .....+....++..+.. . +.++.+.|...|..
T Consensus 25 ~ei~~if~~~~~~~~mt~~~l~~FL~~~Q~~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSENGVMTVDHLHRFLIDVQKQ-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHHHhcCC-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 366666666 45689999998888543322 12345556666666533 2 77999999888754
No 188
>PHA00003 B internal scaffolding protein
Probab=44.74 E-value=44 Score=18.75 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=35.6
Q ss_pred CcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-CCcCHHHHHHH----HHhhccC
Q psy15319 47 PINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-GVINGEKIRGA----MKLVRTF 100 (101)
Q Consensus 47 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-g~is~~el~~~----l~~~g~~ 100 (101)
.++.+-=..++++.... ..-.++-.+++..||++ ..|-..||-++ +..+|+|
T Consensus 64 r~~iEagk~~c~RrFGg--Atcddksa~iya~FD~~d~rVQpaEFYRFnD~ei~k~GYF 120 (120)
T PHA00003 64 RADIEAGKAICARRFGG--ATCDDKSAKIYAQFDPNDRRVQPAEFYRFNDGEINKYGYF 120 (120)
T ss_pred HHHHHHHHHHHHHHcCC--CCcchHHHHHhcccCcccceechhHheecccchhhhcccC
Confidence 34555555666666665 55557788899999999 88988887643 4555543
No 189
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=44.63 E-value=27 Score=25.06 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=37.9
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--C-CCCcCHHHHHHHHHhhhcC
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE--A-TGPINFTQLLSLFANRMSG 63 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~-~g~i~~~ef~~~l~~~~~~ 63 (101)
+|.++-+.+...++..++..++..+|......+--..|.. + ...+.|.+++..+...+.+
T Consensus 490 ~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel~D 552 (612)
T COG5069 490 LFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVD 552 (612)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHHHhhhhcC
Confidence 4555555555668888888888888877655443333433 2 2356777777777665544
No 190
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=44.32 E-value=28 Score=14.58 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=7.9
Q ss_pred CCcCHHHHHHHH
Q psy15319 83 GVINGEKIRGAM 94 (101)
Q Consensus 83 g~is~~el~~~l 94 (101)
|.||.+||.+.-
T Consensus 15 G~IseeEy~~~k 26 (31)
T PF09851_consen 15 GEISEEEYEQKK 26 (31)
T ss_pred CCCCHHHHHHHH
Confidence 777777766543
No 191
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=43.94 E-value=42 Score=16.50 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=20.7
Q ss_pred HHHHHHHHhccCCCC----cCHHHHHHHHHhhccC
Q psy15319 70 EVVVAAFRAFDEGGV----INGEKIRGAMKLVRTF 100 (101)
Q Consensus 70 ~~~~~~f~~~D~~g~----is~~el~~~l~~~g~~ 100 (101)
+++..+-..+..+|+ .+..+..+++..+|+-
T Consensus 11 ~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 11 EQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCC
Confidence 444444444444477 8888888888888874
No 192
>KOG4286|consensus
Probab=43.30 E-value=1.5e+02 Score=22.89 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=57.8
Q ss_pred hhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--CCC-CcCHHHHHHHHHhh------------hcCCCCCcH
Q psy15319 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE--ATG-PINFTQLLSLFANR------------MSGGATDDD 69 (101)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~~g-~i~~~ef~~~l~~~------------~~~~~~~~~ 69 (101)
++.||+.++|.|..-+|+..+..+.....++-+..+|.. +++ .++-..|-.++... +.. .+.+
T Consensus 476 lNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGg--sNve 553 (966)
T KOG4286|consen 476 LNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGG--SNIE 553 (966)
T ss_pred HHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcC--CCCC
Confidence 578999999999999999999888888888888888877 333 34344443333221 222 3455
Q ss_pred HHHHHHHHhccCCCCcCHHHHHHHH
Q psy15319 70 EVVVAAFRAFDEGGVINGEKIRGAM 94 (101)
Q Consensus 70 ~~~~~~f~~~D~~g~is~~el~~~l 94 (101)
..++..|+.....-.|+...|..++
T Consensus 554 psvrsCF~~v~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 554 PSVRSCFQFVNNKPEIEAALFLDWM 578 (966)
T ss_pred hHHHHHHHhcCCCCcchHHHHHHHh
Confidence 6677788844221566666665443
No 193
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=42.32 E-value=19 Score=15.75 Aligned_cols=16 Identities=0% Similarity=0.025 Sum_probs=10.2
Q ss_pred CcCHHHHHHHHHhhcc
Q psy15319 84 VINGEKIRGAMKLVRT 99 (101)
Q Consensus 84 ~is~~el~~~l~~~g~ 99 (101)
.++..+++.+|...||
T Consensus 3 sltV~~Lk~iL~~~~I 18 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGI 18 (35)
T ss_dssp T--SHHHHHHHHHHT-
T ss_pred cCcHHHHHHHHHHcCC
Confidence 3566788888888776
No 194
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=42.32 E-value=78 Score=19.19 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=20.5
Q ss_pred cHHHHHHHHHhccCC-CCcCHHHHHHHHHhhccC
Q psy15319 68 DDEVVVAAFRAFDEG-GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 68 ~~~~~~~~f~~~D~~-g~is~~el~~~l~~~g~~ 100 (101)
....+..+.+..... |+|+.+.+..+-..+|+.
T Consensus 34 ~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~ 67 (169)
T PRK07571 34 RQDALIEVLHKAQELFGYLERDLLLYVARQLKLP 67 (169)
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcC
Confidence 344455555555444 777777777777777664
No 195
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=42.08 E-value=29 Score=15.73 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=12.3
Q ss_pred CCcCHHHHHHHHHh
Q psy15319 83 GVINGEKIRGAMKL 96 (101)
Q Consensus 83 g~is~~el~~~l~~ 96 (101)
|.+|.+++++++..
T Consensus 12 GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 12 GPFSLEELRQLISS 25 (45)
T ss_pred CCcCHHHHHHHHHc
Confidence 99999999988865
No 196
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=41.57 E-value=8.4 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHhccCC-CCcCHHHHHHHHHh
Q psy15319 75 AFRAFDEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 75 ~f~~~D~~-g~is~~el~~~l~~ 96 (101)
.|..+|.+ ..|+.+++..++..
T Consensus 148 ~f~l~D~~~~~i~~~~~~~~~~~ 170 (221)
T PF08812_consen 148 SFILYDEEGKPISNEELEEYIDE 170 (221)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHH
Confidence 48888888 88999998887766
No 197
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=40.81 E-value=64 Score=19.73 Aligned_cols=52 Identities=8% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-CCcCHHHHHHHHHhh
Q psy15319 46 GPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-GVINGEKIRGAMKLV 97 (101)
Q Consensus 46 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-g~is~~el~~~l~~~ 97 (101)
..++|.+.+.-+.....-........+...|.-+..+ .+|+..+...-|+.+
T Consensus 29 ~~~~F~dii~EI~~~~~~s~~ei~~~i~~FYTdln~DgrFi~LGdn~WgLRsw 81 (175)
T COG3343 29 KPFNFSDIINEIQKLLGVSKEEIRSRIGQFYTDLNIDGRFISLGDNKWGLRSW 81 (175)
T ss_pred CCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhccCCceeeccccccchhhc
Confidence 3588888777775544321234445666677777778 888888876666654
No 198
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=40.44 E-value=68 Score=17.96 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=32.8
Q ss_pred hccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHH
Q psy15319 6 ALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSL 56 (101)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 56 (101)
.+.-..++..+|.+++..+|++.|.......+..++..-.| .+.++.+.-
T Consensus 8 lL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-Kdi~eLIa~ 57 (109)
T cd05833 8 LLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-KDVEELIAA 57 (109)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-CCHHHHHHH
Confidence 33334556678999999999999988877777666555211 344555443
No 199
>PLN02230 phosphoinositide phospholipase C 4
Probab=40.27 E-value=58 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHhccCC-CCcCHHHHHHHHHhh
Q psy15319 66 TDDDEVVVAAFRAFDEG-GVINGEKIRGAMKLV 97 (101)
Q Consensus 66 ~~~~~~~~~~f~~~D~~-g~is~~el~~~l~~~ 97 (101)
..+..++..+|..+-.+ +++|.++|.++|...
T Consensus 25 ~~p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~ 57 (598)
T PLN02230 25 SGPVADVRDLFEKYADGDAHMSPEQLQKLMAEE 57 (598)
T ss_pred CCCcHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence 44556777777777555 777777777777653
No 200
>PHA02105 hypothetical protein
Probab=39.52 E-value=44 Score=16.51 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHhC---CCCCHH---HHHHHHHh---CCCCcCHHHHHHHH
Q psy15319 15 ILGKADLIKIFDTVG---KLVTDK---EVDDMLAE---ATGPINFTQLLSLF 57 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~---~~~~~~---~~~~~~~~---~~g~i~~~ef~~~l 57 (101)
+++.++|+.++..-. .+...+ .++..|+. .--+++|+||-.++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 467788887776332 222222 22333333 34567888887766
No 201
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.35 E-value=1e+02 Score=19.63 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHH
Q psy15319 12 KDGILGKADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLF 57 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l 57 (101)
.||+|+..|=..++..+...-.+.+.+..+.. -...++.++.....
T Consensus 123 aDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~PlD~~~ia~~a 169 (225)
T COG2979 123 ADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQPLDPDEIAAAA 169 (225)
T ss_pred hcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 46666666666666555444444444444433 34445555444433
No 202
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=37.89 E-value=81 Score=20.16 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=30.9
Q ss_pred hccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 6 ALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
...-.+++|.++...++.-+..+....+..|+..+-..
T Consensus 158 ~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~R 195 (224)
T PF13829_consen 158 DIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKR 195 (224)
T ss_pred EEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHH
Confidence 34446789999999999999999999999988766544
No 203
>KOG2301|consensus
Probab=37.51 E-value=20 Score=29.35 Aligned_cols=56 Identities=9% Similarity=0.200 Sum_probs=40.5
Q ss_pred hHhhhccCCCCCCcccHHHHHHHHHHhCCC----CCHHHHHHHHHh-----CCCCcCHHHHHHHHHh
Q psy15319 2 SKGFALMDADKDGILGKADLIKIFDTVGKL----VTDKEVDDMLAE-----ATGPINFTQLLSLFAN 59 (101)
Q Consensus 2 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~-----~~g~i~~~ef~~~l~~ 59 (101)
.++++.+|++..|.|+..++...++.+..+ ..... +++.. .++.|++.+-+.++..
T Consensus 1420 ~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1420 YEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 568899999999999999999999976432 11111 22222 6889999998777753
No 204
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=37.22 E-value=71 Score=17.27 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHh---------CCCCcCHHHHHHH
Q psy15319 20 DLIKIFDTVGKLVTDKEVDDMLAE---------ATGPINFTQLLSL 56 (101)
Q Consensus 20 e~~~~l~~~~~~~~~~~~~~~~~~---------~~g~i~~~ef~~~ 56 (101)
.++.+|+.-|+..+..++...+.. .+|.|+.+.|..+
T Consensus 13 ~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 13 ILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 456666777888888888777666 5677888877653
No 205
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=36.63 E-value=77 Score=18.54 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=23.1
Q ss_pred cHHHHHHHHHhccCC-CCcCHHHHHHHHHhhccC
Q psy15319 68 DDEVVVAAFRAFDEG-GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 68 ~~~~~~~~f~~~D~~-g~is~~el~~~l~~~g~~ 100 (101)
....+..+.+..... |+|+.+.+..+-..+|+.
T Consensus 14 ~~~~li~~L~~vQ~~~G~i~~~~~~~iA~~l~~~ 47 (148)
T TIGR01958 14 KRSAIMPALMIAQEQKGWVTPEAIAAVAEMLGIP 47 (148)
T ss_pred ChhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcC
Confidence 445566666666545 888888888888877764
No 206
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=36.43 E-value=11 Score=17.89 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=14.6
Q ss_pred HHHHHHhccCC---CCcCHHHHHHHH
Q psy15319 72 VVAAFRAFDEG---GVINGEKIRGAM 94 (101)
Q Consensus 72 ~~~~f~~~D~~---g~is~~el~~~l 94 (101)
+..+.+.+|++ |.|+.+.|++.+
T Consensus 7 ll~iLk~iDqdLvK~AisGe~Fqe~F 32 (48)
T PF12408_consen 7 LLDILKAIDQDLVKTAISGERFQECF 32 (48)
T ss_dssp HHHHHHHS-HHHHHHHT-SHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHhccHHHHHHH
Confidence 55666777777 777777777654
No 207
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=36.19 E-value=73 Score=17.07 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=33.8
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~is~~el~~~l~~~ 97 (101)
++|.|+-+++-.+.+. ..+.+..++++...-..|....+-|.++|..+
T Consensus 26 ~n~~it~E~y~~V~a~------~T~qdkmRkLld~v~akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVCAC------PTQPDKVRKILDLVQSKGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHHhC------CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 6788888888766543 45667788888775333877777787777653
No 208
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=35.82 E-value=52 Score=15.32 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=13.1
Q ss_pred hccCCCCcCHHHHHHHHHhhcc
Q psy15319 78 AFDEGGVINGEKIRGAMKLVRT 99 (101)
Q Consensus 78 ~~D~~g~is~~el~~~l~~~g~ 99 (101)
.|..+.+++.++...+...+|+
T Consensus 18 ~f~~~~~p~~~~~~~la~~l~l 39 (57)
T PF00046_consen 18 YFQENPYPSKEEREELAKELGL 39 (57)
T ss_dssp HHHHSSSCHHHHHHHHHHHHTS
T ss_pred HHHHhccccccccccccccccc
Confidence 3333466666666666666665
No 209
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.71 E-value=1.5e+02 Score=20.56 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=32.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHh-----CCCCcCHHHHHHHHHhh
Q psy15319 14 GILGKADLIKIFDTVGKLVTDKEVDDMLAE-----ATGPINFTQLLSLFANR 60 (101)
Q Consensus 14 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-----~~g~i~~~ef~~~l~~~ 60 (101)
..++.++|+..|. .+.. +++.+...+.+ -.-++.|.||+..++..
T Consensus 6 ~~~~LeeLe~kLa-~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 6 PNLKLEELEEKLA-SNDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI 55 (379)
T ss_pred CCCcHHHHHHHHh-cCCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 5678899998887 3334 66666666666 24578999999999765
No 210
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=35.66 E-value=96 Score=18.29 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccCC-CCcCHHHHHHHHHhhccC
Q psy15319 69 DEVVVAAFRAFDEG-GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 69 ~~~~~~~f~~~D~~-g~is~~el~~~l~~~g~~ 100 (101)
...+..+.+..... |+|+.+.+..+-..+|+.
T Consensus 21 ~~~ll~~L~~vQ~~~g~ip~~~~~~iA~~l~v~ 53 (154)
T PRK07539 21 RSAVIPALKIVQEQRGWVPDEAIEAVADYLGMP 53 (154)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcC
Confidence 34455555555444 777777777776666654
No 211
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=35.62 E-value=79 Score=17.33 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHH
Q psy15319 16 LGKADLIKIFDTVGKLVTDKEVDDMLAE----ATGPINFTQLLSLFANRMSGGATDDDEVVVAA 75 (101)
Q Consensus 16 i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 75 (101)
++..+..-+|.-++..++++++..+... +...++-.+-...+.....+ ....+++.+.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~--~P~~~di~RV 81 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDE--LPTPEDIERV 81 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS---S-HHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcC--CcCHHHHHHH
Confidence 6777888888888999999998887776 44444555555555555544 4555555544
No 212
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=35.27 E-value=1.7e+02 Score=20.97 Aligned_cols=46 Identities=7% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--CCCCcCHHHHHHHHH
Q psy15319 12 KDGILGKADLIKIFDTVGKLVTDKEVDDMLAE--ATGPINFTQLLSLFA 58 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~~g~i~~~ef~~~l~ 58 (101)
...+|+.+++..+|.... .++...+..++.. ....++.+|++.++.
T Consensus 9 ~~~~i~~~~i~~~l~~~~-~~~~~~v~~il~Kal~~~~Ls~eEal~LL~ 56 (469)
T PRK09613 9 AADFIDDEEIEELLEKAK-NPDKDEIREILEKAKEKKGLSPEEAAVLLN 56 (469)
T ss_pred hhhhcCHHHHHHHHHhcc-CCCHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 346788899988888644 6667778888777 667899999998874
No 213
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=34.85 E-value=63 Score=15.95 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=10.1
Q ss_pred CCcCHHHHHHHHH
Q psy15319 83 GVINGEKIRGAMK 95 (101)
Q Consensus 83 g~is~~el~~~l~ 95 (101)
|.||.+++.+++.
T Consensus 42 GLItL~QL~~i~D 54 (58)
T PF11165_consen 42 GLITLEQLDQIFD 54 (58)
T ss_pred ccccHHHHHHHHH
Confidence 8888888887764
No 214
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=33.94 E-value=32 Score=15.39 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=7.5
Q ss_pred CCcCHHHHHHH
Q psy15319 83 GVINGEKIRGA 93 (101)
Q Consensus 83 g~is~~el~~~ 93 (101)
|.||.+|++.+
T Consensus 25 g~IT~eey~eI 35 (40)
T PF09693_consen 25 GWITKEEYKEI 35 (40)
T ss_pred CeECHHHHHHh
Confidence 77777777654
No 215
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=33.79 E-value=73 Score=16.39 Aligned_cols=51 Identities=8% Similarity=0.033 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHHHhhhcCCCCCcHHHHHH
Q psy15319 22 IKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGGATDDDEVVVA 74 (101)
Q Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 74 (101)
+.++..+....+.+.++.-|...=+.|+..|-..+-...+.+ ..+.+++.+
T Consensus 3 K~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~e--G~~~eeiq~ 53 (71)
T PF04282_consen 3 KEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQE--GMPVEEIQK 53 (71)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 344455555555555555555534445555555444444444 344444433
No 216
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=32.77 E-value=93 Score=17.27 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHHHh
Q psy15319 16 LGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFAN 59 (101)
Q Consensus 16 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~ 59 (101)
+|.+++..+|...|.......+..++..-.| .+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 9999999999999998888887776655222 255665554433
No 217
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.67 E-value=1.4e+02 Score=19.22 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=54.2
Q ss_pred CCCCcccHHHHHHHHHHhCCC----------CCHHHHHHHHHh---------CCCCcCHHHHHHHHHhhhcCCCCCcHHH
Q psy15319 11 DKDGILGKADLIKIFDTVGKL----------VTDKEVDDMLAE---------ATGPINFTQLLSLFANRMSGGATDDDEV 71 (101)
Q Consensus 11 ~~~g~i~~~e~~~~l~~~~~~----------~~~~~~~~~~~~---------~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 71 (101)
..++.++.+....+|.-.|-. ...+|+..+... ..|.|+.+.|..++...+.. .....
T Consensus 130 ~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~lda---Gv~kv 206 (236)
T TIGR03581 130 GKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDA---GVEKV 206 (236)
T ss_pred CCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHc---CCCee
Confidence 345778888877777766532 234566655555 57889999999888655433 22233
Q ss_pred HHHHH-HhccCC-CCcCHHHHHHHHHh
Q psy15319 72 VVAAF-RAFDEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 72 ~~~~f-~~~D~~-g~is~~el~~~l~~ 96 (101)
+-.+| ..+|+. |.--.+++++++..
T Consensus 207 iPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 207 IPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred ccccceeccccccCCCCHHHHHHHHHH
Confidence 34445 345777 88888888888764
No 218
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=32.67 E-value=86 Score=16.83 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--CCCCcCHHHHHHHHH
Q psy15319 13 DGILGKADLIKIFDTVGKLVTDKEVDDMLAE--ATGPINFTQLLSLFA 58 (101)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~~g~i~~~ef~~~l~ 58 (101)
.|.|+..+...++.......+...+..++.- ..|.=-|.-|+..+.
T Consensus 28 ~~Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL~~rG~~~f~aFLeSLE 75 (86)
T cd08809 28 CKVLNSDDEEQVLNDPSLVIRKRKVGVLLDILQRTGLKGYEAFLESLE 75 (86)
T ss_pred hCCCChhhHHHHHcCcccchHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4667777777777766666666666666655 566666776666653
No 219
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=32.24 E-value=90 Score=16.95 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.6
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHh
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLV-TDKEVDDMLAE 43 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~ 43 (101)
+|+.-.+++.-.++..|-+++....|-.+ +..++...+..
T Consensus 2 VFh~~s~~g~y~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~ 42 (92)
T cd01102 2 VFHLESQNGRYKLTFAEAALACKARGAHLATPGQLEAAWQD 42 (92)
T ss_pred EEEecCCCCCcccCHHHHHHHHHHcCCEeCCHHHHHHHHHc
Confidence 56666677888899999999999888654 66677766665
No 220
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=32.01 E-value=1.4e+02 Score=18.94 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCCcCHHHHHHHHHhhhcCCCC---------CcHHHHHHHHHhccCC--CCcCH
Q psy15319 44 ATGPINFTQLLSLFANRMSGGAT---------DDDEVVVAAFRAFDEG--GVING 87 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~~~---------~~~~~~~~~f~~~D~~--g~is~ 87 (101)
..|.++|..++.-|+....+... +..+.+...-+.||++ |.|-.
T Consensus 174 d~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I 228 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKI 228 (246)
T ss_pred hcCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceee
Confidence 56889999999888765443211 2224555667899999 66543
No 221
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=30.80 E-value=98 Score=16.91 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.1
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHh-----------CCCCcCHH
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLV-TDKEVDDMLAE-----------ATGPINFT 51 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~-----------~~g~i~~~ 51 (101)
.|...-+++...++..+-+++....|-.+ +-.++...+.. .||.+.|.
T Consensus 2 lf~~~~~~G~y~l~f~eA~~AC~~~gA~lAs~~QL~~AW~~~Gld~C~aGWLaDGTVryp 61 (95)
T cd03521 2 LFVLELENGSQGLGLRAARQSCASLGARLASAAELRRAVVECFFSACARGWLADGTVGTT 61 (95)
T ss_pred ceeEeCCCCccccCHHHHHHHHHHcCCEeccHHHHHHHHHHhCccccccccccCCccccc
Confidence 56677788899999999999998887544 55666666654 46666664
No 222
>KOG0035|consensus
Probab=30.69 E-value=2.7e+02 Score=21.92 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHHHh----CCCCcCHHHHHHHHHhhhcCCCCCc-HHHHHHHHHhc---cCC--CCcCHHHHHHHHH
Q psy15319 36 EVDDMLAE----ATGPINFTQLLSLFANRMSGGATDD-DEVVVAAFRAF---DEG--GVINGEKIRGAMK 95 (101)
Q Consensus 36 ~~~~~~~~----~~g~i~~~ef~~~l~~~~~~~~~~~-~~~~~~~f~~~---D~~--g~is~~el~~~l~ 95 (101)
++..++.. ..+..++++|+.++...-.. ... ..-+...|+.. |.+ |.++..++.+.+.
T Consensus 748 ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~--~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 748 ELRALENEQDKIDGGAASPEELLRCLMSLGYN--TEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred HHHHHHhHHHHhhcccCCHHHHHHHHHhcCcc--cchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 34444444 56779999999988654333 233 23344555555 444 8899988877664
No 223
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.43 E-value=1.4e+02 Score=18.72 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHhccCC-CCcCHHHHHHHHHhhcc
Q psy15319 67 DDDEVVVAAFRAFDEG-GVINGEKIRGAMKLVRT 99 (101)
Q Consensus 67 ~~~~~~~~~f~~~D~~-g~is~~el~~~l~~~g~ 99 (101)
.+.....++-..+..+ .+.+.+|+...|+.+|.
T Consensus 52 sSA~~~~~~q~~lG~gfly~~~eEL~e~Lk~~g~ 85 (210)
T COG1059 52 SSATMGLRAQNELGDGFLYLSEEELREKLKEVGY 85 (210)
T ss_pred chHHHHHHHHHHhccccccCCHHHHHHHHHHhcc
Confidence 3334445555556655 77788888888887764
No 224
>PHA03415 putative internal virion protein; Provisional
Probab=30.35 E-value=99 Score=23.95 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.4
Q ss_pred HhhhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 3 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
+.|..||++=+|+ ++...+|+..|+.+++.-+..+-..
T Consensus 93 e~f~~~dp~fd~k---r~~~d~l~~~g~~~t~~~l~~la~a 130 (1019)
T PHA03415 93 EMFNDFDPNFDGK---REAGDILNAHGIEDTDDHLEALAKA 130 (1019)
T ss_pred HhcccCCCCccch---HHHHHHHHHcCCCCchhHHHHHHhc
Confidence 5789999999987 6777788889999988877665544
No 225
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=30.33 E-value=77 Score=15.60 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHhc--cCC-CCcCHHHHHHHHHh
Q psy15319 67 DDDEVVVAAFRAF--DEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 67 ~~~~~~~~~f~~~--D~~-g~is~~el~~~l~~ 96 (101)
-+.+.+-...+.+ +.+ ..+|.+|++++|..
T Consensus 12 l~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDPGGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH-GGG--TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH
Confidence 3445566666666 555 77888999888865
No 226
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=30.32 E-value=65 Score=21.93 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-----CCcCH
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-----GVING 87 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-----g~is~ 87 (101)
+|.+-|.|...-+. +....+.++|..+-.| |+|.+
T Consensus 93 SGflLYKEl~rrlk--------~~nP~lae~F~lMaRDEARHAGFlNk 132 (357)
T PLN02508 93 SGFLLYKELGRRLK--------KTNPVVAEIFTLMSRDEARHAGFLNK 132 (357)
T ss_pred ccchHHHHHHHhcc--------cCChHHHHHHHHhCchhHHHHhHHHH
Confidence 67777776554332 2235577788777665 66654
No 227
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=30.24 E-value=88 Score=16.23 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=41.2
Q ss_pred CCCcccHHHHHHHHHHhCCC-----CCHHHHHHHHHh-CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCc
Q psy15319 12 KDGILGKADLIKIFDTVGKL-----VTDKEVDDMLAE-ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVI 85 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~-----~~~~~~~~~~~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~i 85 (101)
.||.++..|...+...+... ....++...+.. ....-+...+.......... ......+..++.....||.+
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~l~~~~~ia~aDG~~ 89 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPDA--ELREALLAALWEVALADGEL 89 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhccCC
Confidence 48999999987665543322 223344444444 11123444455444332211 12234455556666666999
Q ss_pred CHHHHHH
Q psy15319 86 NGEKIRG 92 (101)
Q Consensus 86 s~~el~~ 92 (101)
+..|..-
T Consensus 90 ~~~E~~~ 96 (104)
T cd07177 90 DPEERAL 96 (104)
T ss_pred CHHHHHH
Confidence 8877543
No 228
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=29.77 E-value=58 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.4
Q ss_pred hccCCCCCCcccHHHHHHHHH
Q psy15319 6 ALMDADKDGILGKADLIKIFD 26 (101)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~ 26 (101)
..+|.+++|.++.+++..+-.
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~ 77 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAK 77 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHH
Confidence 467899999999999887654
No 229
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=29.67 E-value=20 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=18.9
Q ss_pred HHHHhccCC-CCcCHHHHHHHHHh
Q psy15319 74 AAFRAFDEG-GVINGEKIRGAMKL 96 (101)
Q Consensus 74 ~~f~~~D~~-g~is~~el~~~l~~ 96 (101)
..|..+|.+ ..|+.+++..++..
T Consensus 203 ~~f~l~D~~~~~i~~e~l~~~~~~ 226 (276)
T TIGR02834 203 GSFRLYDENGRDLSSEELVELIDE 226 (276)
T ss_pred CeEEEEcCCCCccCHHHHHHHHHH
Confidence 358888888 88999999888765
No 230
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=29.46 E-value=1.2e+02 Score=17.71 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCCCcCHHHHHHHHHhhhcCC-CCCcHHHHHHHHHhccCCCCcCHHHHHHHHHhh
Q psy15319 44 ATGPINFTQLLSLFANRMSGG-ATDDDEVVVAAFRAFDEGGVINGEKIRGAMKLV 97 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~~~~~~~-~~~~~~~~~~~f~~~D~~g~is~~el~~~l~~~ 97 (101)
....++..+|+.-+.+....+ ..++...+...|+... .-||..++.++...+
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~--r~Is~gei~~v~s~L 124 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLK--RHISPGEIDKVRSRL 124 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHC
Confidence 356789999998888776653 2344444557788886 456666666665543
No 231
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=28.91 E-value=1.1e+02 Score=16.74 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=30.3
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHh
Q psy15319 4 GFALMDADKDGILGKADLIKIFDTVGKLV-TDKEVDDMLAE 43 (101)
Q Consensus 4 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~ 43 (101)
+|+.-.+++.-.++..|-+++....|-.+ +..++...+..
T Consensus 2 VFh~~~~~grY~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~ 42 (93)
T cd03515 2 VFHLRSRSGKYKLTYTEAKAACEAEGAHLATYSQLSAAQQL 42 (93)
T ss_pred eeeeeCCCCccccCHHHHHHHHHHcCCccCCHHHHHHHHHc
Confidence 56666677777899999999999887654 66677766665
No 232
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=28.20 E-value=1.5e+02 Score=18.28 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=9.5
Q ss_pred CCcCHHHHHHHHHhhc
Q psy15319 83 GVINGEKIRGAMKLVR 98 (101)
Q Consensus 83 g~is~~el~~~l~~~g 98 (101)
..||..||...+..+|
T Consensus 74 ~~iT~~Df~~F~A~FG 89 (181)
T PF11422_consen 74 NVITIPDFYKFLARFG 89 (181)
T ss_dssp SEEEHHHHHHHHHHSS
T ss_pred ceeeHHHHHHHHHHhC
Confidence 5566666666665554
No 233
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.01 E-value=1e+02 Score=16.20 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEV 37 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~ 37 (101)
.|+...++++++.+|.....-+.
T Consensus 8 ~VP~~~wk~F~R~LGLsdn~Ie~ 30 (77)
T cd08815 8 AVPARRWKEFVRTLGLREAEIEA 30 (77)
T ss_pred cCChHHHHHHHHHcCCcHhHHHH
Confidence 57889999999999987766443
No 234
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=27.90 E-value=53 Score=15.18 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=7.4
Q ss_pred CCcCHHHHHHH
Q psy15319 83 GVINGEKIRGA 93 (101)
Q Consensus 83 g~is~~el~~~ 93 (101)
|.||.+|++.+
T Consensus 30 ~~IT~eey~eI 40 (45)
T TIGR01669 30 KLITREQYKVI 40 (45)
T ss_pred CccCHHHHHHH
Confidence 67777776654
No 235
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.79 E-value=47 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=19.7
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-----CCcCH
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-----GVING 87 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-----g~is~ 87 (101)
+|.+-|.|...-+. +....+.+.|..+-.| |+|.+
T Consensus 93 SGflLYKEl~rrlk--------~~nP~lae~F~lMaRDEARHAGFlNk 132 (351)
T CHL00185 93 SGFLLYKELSRKLK--------DKNPLLAEGFLLMSRDEARHAGFLNK 132 (351)
T ss_pred hhhHHHHHHHHHhc--------cCCcHHHHHHHHHhhhhHHHhhhHHH
Confidence 56666665544332 1224577777777555 66654
No 236
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.72 E-value=70 Score=19.24 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 17 GKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 17 ~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
+.+||-+.|+..=...++++.++.++.
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~ 28 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEY 28 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555555422224566666666544
No 237
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=27.65 E-value=1.2e+02 Score=17.00 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.5
Q ss_pred hccCCCCCCcccHHHHHHHHH
Q psy15319 6 ALMDADKDGILGKADLIKIFD 26 (101)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l~ 26 (101)
+.+|.+.+-+|+.++++.+..
T Consensus 10 RLYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cccCCCccceeeHHHHHHHHH
Confidence 468899999999999998877
No 238
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=27.54 E-value=99 Score=16.37 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy15319 17 GKADLIKIFDTVGKLVTDKEVDDMLA 42 (101)
Q Consensus 17 ~~~e~~~~l~~~~~~~~~~~~~~~~~ 42 (101)
+..||...+..-....+..++..++.
T Consensus 2 tk~eli~~ia~~~~~~s~~~~~~vv~ 27 (94)
T PRK00199 2 TKSELIERLAARNPHLSAKDVENAVK 27 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34555555544333445555444433
No 239
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=27.16 E-value=1.1e+02 Score=16.19 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHH
Q psy15319 17 GKADLIKIFDTVGKLVTDKEVDDML 41 (101)
Q Consensus 17 ~~~e~~~~l~~~~~~~~~~~~~~~~ 41 (101)
+..++...+..-....+..++...+
T Consensus 2 ~k~eli~~i~~~~~~~s~~~v~~vv 26 (94)
T TIGR00988 2 TKSELIERIATQQSHLPAKDVEDAV 26 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455555554333334444444433
No 240
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.12 E-value=2.1e+02 Score=19.62 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHHHHHHh
Q psy15319 20 DLIKIFDTVGKLVTDKEVDDMLAE-------ATGPINFTQLLSLFAN 59 (101)
Q Consensus 20 e~~~~l~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~~~l~~ 59 (101)
-++..+..+|+..++.++..++.. ....++-+|+..++..
T Consensus 324 ~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~ 370 (378)
T PRK11858 324 ALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVED 370 (378)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345567777888877777766655 2346777776666644
No 241
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=27.09 E-value=1.5e+02 Score=17.86 Aligned_cols=48 Identities=4% Similarity=-0.011 Sum_probs=27.4
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCcCHHHHHHHHHhhccC
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~is~~el~~~l~~~g~~ 100 (101)
...|+..+|+.++...-.+ ...-..+...|+...++ .-.++|..+|+.
T Consensus 113 ~~~V~~~~w~~l~~~~g~~--~~~m~~wh~~fe~~~p~------~h~~~l~~~g~~ 160 (172)
T cd04790 113 QRLVTKEKWVAILKAAGMD--EADMRRWHIEFEKMEPE------AHQEFLQSLGIP 160 (172)
T ss_pred cccCCHHHHHHHHHHcCCC--hHHHHHHHHHHHHhCcH------HHHHHHHHcCCC
Confidence 3467777787777443222 22225566777777653 445556666653
No 242
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=26.84 E-value=54 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-----CCcCH
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-----GVING 87 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-----g~is~ 87 (101)
+|.+-|.|...-+ +. ....+.++|..+-.| |+|.+
T Consensus 97 SGflLYKEl~rrl----k~----~nP~lae~F~lMaRDEARHAGFlNk 136 (355)
T PRK13654 97 SGFLLYKELSRRL----KD----RNPLLAELFQLMARDEARHAGFLNK 136 (355)
T ss_pred hhHHHHHHHHHhc----cc----cCcHHHHHHHHHhhhHHHHhhhHHH
Confidence 5566665544333 21 125577788777655 66654
No 243
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=26.65 E-value=62 Score=21.76 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=19.9
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-----CCcCH
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-----GVING 87 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-----g~is~ 87 (101)
+|.+-|.|...-+. +....+.++|..+-.| |+|.+
T Consensus 77 SGflLYKEl~rrlk--------~~nP~lae~F~lMaRDEARHAGFlNk 116 (323)
T cd01047 77 SGFLLYKELGRRLK--------NTNPVVAELFRLMARDEARHAGFLNK 116 (323)
T ss_pred hhHHHHHHHHHHcc--------cCCcHHHHHHHHHhhhHHHHhhhHHH
Confidence 56666655544332 2234577788777655 66654
No 244
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=26.53 E-value=54 Score=18.94 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=25.6
Q ss_pred HHHhCCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-CCcCHHH
Q psy15319 40 MLAEATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-GVINGEK 89 (101)
Q Consensus 40 ~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-g~is~~e 89 (101)
++......++|.+.+.-+..............+.+.|..+..+ .+|+..+
T Consensus 12 iL~~~~~~m~f~dL~~ev~~~~~~s~e~~~~~iaq~YtdLn~DGRFi~lG~ 62 (129)
T PRK02363 12 ILKEKKEPMSFYDLVNEIQKYLGKSDEEIRERIAQFYTDLNLDGRFISLGD 62 (129)
T ss_pred HHHHcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCCeeEcCC
Confidence 3333556677777766654443321112234455556666655 5555444
No 245
>KOG4301|consensus
Probab=26.44 E-value=1e+02 Score=21.21 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=36.3
Q ss_pred hhccCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh---CCCCcCHHHHHHHHHh
Q psy15319 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE---ATGPINFTQLLSLFAN 59 (101)
Q Consensus 5 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~g~i~~~ef~~~l~~ 59 (101)
...+|+.+.|.++.--.+.+|..+.-..-.+.++-++.. ++|-+.+-.|..++..
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 346789999999988888888766555555555555555 5665555555555443
No 246
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=26.43 E-value=1.3e+02 Score=16.83 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15319 31 LVTDKEVDDMLAEATGPINFTQLLSLF 57 (101)
Q Consensus 31 ~~~~~~~~~~~~~~~g~i~~~ef~~~l 57 (101)
+.+.++++.++..-...++=++.-.++
T Consensus 78 P~~~dElrai~~~~~~~~~~e~l~~IL 104 (112)
T PRK14981 78 PETRDELRAIFAKERYTLSPEELDEIL 104 (112)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345667777666544455555554444
No 247
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.42 E-value=1.2e+02 Score=16.44 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHH---HhhhcCCCCCcHHHHHHHHHhccCCCCcCHHHHH
Q psy15319 15 ILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLF---ANRMSGGATDDDEVVVAAFRAFDEGGVINGEKIR 91 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l---~~~~~~~~~~~~~~~~~~f~~~D~~g~is~~el~ 91 (101)
.|+..+++.+++.+|+ ++.++..+-..+.+. .+....++ ...... ..+...+.++.+.++. ..+.+.+.
T Consensus 16 ~V~~~~Wk~laR~LGL--se~~I~~i~~~~~~~--~eq~~qmL~~W~~~~G~--~At~~~L~~aL~~~~~--~~~Ae~I~ 87 (96)
T cd08315 16 EVPFDSWNRLMRQLGL--SENEIDVAKANERVT--REQLYQMLLTWVNKTGR--KASVNTLLDALEAIGL--RLAKESIQ 87 (96)
T ss_pred HCCHHHHHHHHHHcCC--CHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHccc--ccHHHHHH
Confidence 5677889999888884 555555444332221 33333333 333333 4555666666666543 23344455
Q ss_pred HHHHhhc
Q psy15319 92 GAMKLVR 98 (101)
Q Consensus 92 ~~l~~~g 98 (101)
..+..-|
T Consensus 88 ~~l~~~~ 94 (96)
T cd08315 88 DELISSG 94 (96)
T ss_pred HHHHHcC
Confidence 5444443
No 248
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=26.19 E-value=1.5e+02 Score=17.61 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=33.0
Q ss_pred HhhhccCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHHHhh
Q psy15319 3 KGFALMDAD-KDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANR 60 (101)
Q Consensus 3 ~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~l~~~ 60 (101)
-+|+..|++ .-|.=-.+|+..+|+.+|++.. .--+..+..-+..-+|..++.++...
T Consensus 78 fL~~~idp~~~~~~k~eeev~~~lK~L~YP~~-~isKS~L~a~gs~hsWP~lL~~L~WL 135 (157)
T PF03801_consen 78 FLFRQIDPNFKFGKKFEEEVPFLLKALGYPFA-TISKSSLQAPGSPHSWPHLLGALHWL 135 (157)
T ss_dssp HHHHTTSTT---SSTHHHHHHHHHHHTT-SS-----HHHHHSTTSTTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCHHHHHHHHHHHhCCCcc-ccCHHHccCCCCcccHHHHHHHHHHH
Confidence 345666754 2232225578889999998874 22223333456677899998888654
No 249
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=26.16 E-value=1.3e+02 Score=16.95 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=24.4
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 11 DKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 11 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
.++..+|.+++..+|.+.|.......+..++..
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~ 45 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSE 45 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 344568888999999988887777766655554
No 250
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=25.98 E-value=1e+02 Score=15.74 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.0
Q ss_pred CCCCcCHHHHHHHHH
Q psy15319 44 ATGPINFTQLLSLFA 58 (101)
Q Consensus 44 ~~g~i~~~ef~~~l~ 58 (101)
..|+++-+||..++.
T Consensus 27 ~~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 27 ASGKLRGEEINSLLE 41 (75)
T ss_pred HcCcccHHHHHHHHH
Confidence 788888888887763
No 251
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=25.71 E-value=61 Score=21.90 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=19.7
Q ss_pred CCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC-----CCcCH
Q psy15319 45 TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG-----GVING 87 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~-----g~is~ 87 (101)
+|.+-|.|...-+ .++...+.++|..+-.| |+|.+
T Consensus 87 SGflLYKEl~rrl--------k~~~P~lae~F~~MaRDEARHAGFlNk 126 (337)
T TIGR02029 87 SGFLLYKELSRRL--------KNRDPVVAELFQLMARDEARHAGFLNK 126 (337)
T ss_pred hhhHHHHHHHHhc--------CCCChHHHHHHHHHhhhhHHHhhhHHH
Confidence 4555555544322 23335577788777655 76654
No 252
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=25.32 E-value=1.2e+02 Score=16.15 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--CCCCcCHHHHHHHHH
Q psy15319 13 DGILGKADLIKIFDTVGKLVTDKEVDDMLAE--ATGPINFTQLLSLFA 58 (101)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~~g~i~~~ef~~~l~ 58 (101)
.|.++.++...+...............++.. ..|.=.|.-|+..+.
T Consensus 28 ~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~~Af~~F~~aL~ 75 (86)
T cd08785 28 CKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGKRGYVAFLESLE 75 (86)
T ss_pred cCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 4566666666555432222223444444444 566666777777663
No 253
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.06 E-value=1e+02 Score=15.18 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHh-CCCCcCHHH
Q psy15319 29 GKLVTDKEVDDMLAE-ATGPINFTQ 52 (101)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~g~i~~~e 52 (101)
|..++.+++..++.. -+|.++=.+
T Consensus 12 g~~Ls~~e~~~~~~~i~~g~~s~~q 36 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILDGEVSDAQ 36 (66)
T ss_dssp T----HHHHHHHHHHHHTTSS-HHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCCHHH
Confidence 445555555555555 344444333
No 254
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=24.68 E-value=77 Score=17.58 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=11.4
Q ss_pred CCcCHHHHHHHHHhh
Q psy15319 83 GVINGEKIRGAMKLV 97 (101)
Q Consensus 83 g~is~~el~~~l~~~ 97 (101)
|+|+.+|+.+++..+
T Consensus 28 ~~is~~ef~~iI~~I 42 (118)
T PF10256_consen 28 GYISPEEFEEIINTI 42 (118)
T ss_pred CCCCHHHHHHHHHHH
Confidence 778888888777665
No 255
>KOG0869|consensus
Probab=24.67 E-value=1.7e+02 Score=17.70 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=11.0
Q ss_pred CCCcccHHHHHHHHHH
Q psy15319 12 KDGILGKADLIKIFDT 27 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~ 27 (101)
.|.+++...+.++|+.
T Consensus 29 qDr~LPIANV~RIMK~ 44 (168)
T KOG0869|consen 29 QDRFLPIANVSRIMKK 44 (168)
T ss_pred hhhhccHHHHHHHHHh
Confidence 4566777777777773
No 256
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=24.66 E-value=1.2e+02 Score=19.17 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHhccCC---CCcCHHHHHHHHHhhccC
Q psy15319 67 DDDEVVVAAFRAFDEG---GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 67 ~~~~~~~~~f~~~D~~---g~is~~el~~~l~~~g~~ 100 (101)
........+|+.++.- -.++.+++...++..|+.
T Consensus 46 ~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGly 82 (211)
T COG0177 46 VVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLY 82 (211)
T ss_pred HHHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCc
Confidence 3335566668888743 668889999999988864
No 257
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=24.43 E-value=1.3e+02 Score=16.06 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCcCHHHHHHHHHhhhcCC-------------CCCcHHHHHHHHHhccCCCC
Q psy15319 45 TGPINFTQLLSLFANRMSGG-------------ATDDDEVVVAAFRAFDEGGV 84 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~~~~-------------~~~~~~~~~~~f~~~D~~g~ 84 (101)
++..++.+|+.++...++-. ...+.+.+.++|+.+|.||.
T Consensus 23 ~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGf 75 (87)
T cd01612 23 SATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGE 75 (87)
T ss_pred CCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCE
Confidence 45567777777776544320 12345778888888876654
No 258
>PF15244 HSD3: Hydroxy-steroid dehydrogenase
Probab=24.28 E-value=2.5e+02 Score=19.87 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhc-cCC-CCcCHHHHHHHHHhh
Q psy15319 68 DDEVVVAAFRAF-DEG-GVINGEKIRGAMKLV 97 (101)
Q Consensus 68 ~~~~~~~~f~~~-D~~-g~is~~el~~~l~~~ 97 (101)
....+.++|+.+ +.| |.++.+-++++|..+
T Consensus 380 Snr~Lervfe~HI~~Nk~~Lde~kMr~ll~~L 411 (419)
T PF15244_consen 380 SNRVLERVFERHIDQNKHRLDEEKMRHLLEQL 411 (419)
T ss_pred cHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 346688889776 666 999999999888654
No 259
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=23.27 E-value=51 Score=19.58 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=13.8
Q ss_pred hccCCCCCCcccHHHHHHHH
Q psy15319 6 ALMDADKDGILGKADLIKIF 25 (101)
Q Consensus 6 ~~~D~~~~g~i~~~e~~~~l 25 (101)
...|+++.+++|.++++.++
T Consensus 76 ~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 76 NQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHhcCCceeHHHHHHHH
Confidence 44566677778888887654
No 260
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=23.21 E-value=56 Score=17.87 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=7.0
Q ss_pred CCcCHHHHHHHHHhhc
Q psy15319 83 GVINGEKIRGAMKLVR 98 (101)
Q Consensus 83 g~is~~el~~~l~~~g 98 (101)
-.+|.+|+..++...|
T Consensus 34 ~p~s~~eL~~~l~~~g 49 (105)
T cd03035 34 DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 3444444444444433
No 261
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=22.44 E-value=68 Score=17.63 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=7.2
Q ss_pred CCcCHHHHHHHHHhhc
Q psy15319 83 GVINGEKIRGAMKLVR 98 (101)
Q Consensus 83 g~is~~el~~~l~~~g 98 (101)
...+.+++.+++...|
T Consensus 34 ~~~~~~el~~~~~~~~ 49 (111)
T cd03036 34 EPPSKEELKKWLEKSG 49 (111)
T ss_pred CcccHHHHHHHHHHcC
Confidence 4444444444444433
No 262
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=22.40 E-value=58 Score=18.16 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=7.4
Q ss_pred CCcCHHHHHHHHHhhc
Q psy15319 83 GVINGEKIRGAMKLVR 98 (101)
Q Consensus 83 g~is~~el~~~l~~~g 98 (101)
..+|.+|+..++..+|
T Consensus 35 ~p~s~~eL~~~l~~~g 50 (113)
T cd03033 35 EPWTAETLRPFFGDLP 50 (113)
T ss_pred CCCCHHHHHHHHHHcC
Confidence 3444445544444443
No 263
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.30 E-value=70 Score=19.47 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=15.4
Q ss_pred HhccCC--CCcCHHHHHHHHHh
Q psy15319 77 RAFDEG--GVINGEKIRGAMKL 96 (101)
Q Consensus 77 ~~~D~~--g~is~~el~~~l~~ 96 (101)
+.||.. .|||.+++.++...
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~ 40 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKE 40 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhc
Confidence 567777 78888888887764
No 264
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=22.30 E-value=1.9e+02 Score=17.40 Aligned_cols=17 Identities=12% Similarity=0.512 Sum_probs=12.7
Q ss_pred CCCcCHHHHHHHHHhhh
Q psy15319 45 TGPINFTQLLSLFANRM 61 (101)
Q Consensus 45 ~g~i~~~ef~~~l~~~~ 61 (101)
++.|++..|..++....
T Consensus 97 n~~i~~~~ff~~lQ~~l 113 (175)
T PF04876_consen 97 NGLIDIGKFFDILQPKL 113 (175)
T ss_pred ccceeHHHHHHHHHHHh
Confidence 45699999998885443
No 265
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=22.29 E-value=1.4e+02 Score=15.96 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy15319 14 GILGKADLIKIFDTVGKLVTDKEVDDMLAE 43 (101)
Q Consensus 14 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 43 (101)
..||..|+..+-+..+.+.+..+...++..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~ 42 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANI 42 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 468899999999999999999998887766
No 266
>PF01454 MAGE: MAGE family; InterPro: IPR002190 The first mammalian members of the MAGE (melanoma-associated antigen) gene family were originally described as completely silent in normal adult tissues, with the exception of male germ cells and, for some of them, placenta. By contrast, these genes were expressed in various kinds of tumors. However, other members of the family were recently found to be expressed in normal cells, indicating that the family is larger and more disparate than initially expected. MAGE-like genes have also been identified in non-mammalian species, including Drosophila melanogaster (Fruit fly) and Danio rerio (Zebrafish). Although no MAGE homologous sequences have been identified in Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast) or Schizosaccharomyces pombe (Fission yeast), MAGE sequences have been found in several vegetal species, including Arabidopsis thaliana (Mouse-ear cress) []. The only region of homology shared by all of the members of the family is a stretch of about 200 amino acids which has been named the MAGE conserved domain. The MAGE conserved domain is usually located close to the C-terminal, although it can also be found in a more central position in some proteins. The MAGE conserved domain is generally present as a single copy but it is duplicated in some proteins. It has been proposed that the MAGE conserved domain of MAGE-D proteins might interact with p75 neurotrophin or related receptors [].; PDB: 3NW0_B 2WA0_A 1I4F_C.
Probab=22.19 E-value=75 Score=19.30 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=14.3
Q ss_pred CCcCHHHHHHHHHhhccC
Q psy15319 83 GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 83 g~is~~el~~~l~~~g~~ 100 (101)
|.|+.+++.+.|..+|+.
T Consensus 119 ~~i~E~~L~~~L~~lgi~ 136 (195)
T PF01454_consen 119 NSISEDDLWKFLRRLGID 136 (195)
T ss_dssp T-EEHHHHHHHHHHTT--
T ss_pred CccCHHHHHHHHHhcCCC
Confidence 999999999999999975
No 267
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=22.14 E-value=1.2e+02 Score=17.49 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHh-CCCCcCHHHHHHHHHh
Q psy15319 31 LVTDKEVDDMLAE-ATGPINFTQLLSLFAN 59 (101)
Q Consensus 31 ~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~ 59 (101)
..+...+...+.. ..|.++|.+|+..+..
T Consensus 66 ~~n~~~~~~~lk~hq~Gqtdf~tfC~~~A~ 95 (125)
T PF07166_consen 66 TSNKALFKEALKRHQQGQTDFETFCKDAAK 95 (125)
T ss_dssp ---HHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCccHHHHHHHHHh
Confidence 3444555555555 7899999999988764
No 268
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=22.08 E-value=99 Score=16.32 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=14.6
Q ss_pred CCcCHHHHHHHHHhhccC
Q psy15319 83 GVINGEKIRGAMKLVRTF 100 (101)
Q Consensus 83 g~is~~el~~~l~~~g~~ 100 (101)
-.|+.+|...+|+.+|+-
T Consensus 19 ~vls~eE~~~vLk~l~i~ 36 (80)
T COG2012 19 EVLSEEEAKEVLKELGIE 36 (80)
T ss_pred EEcCHHHHHHHHHHhCCC
Confidence 668888899999888763
No 269
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=22.05 E-value=64 Score=17.87 Aligned_cols=16 Identities=0% Similarity=-0.006 Sum_probs=9.4
Q ss_pred CCcCHHHHHHHHHhhc
Q psy15319 83 GVINGEKIRGAMKLVR 98 (101)
Q Consensus 83 g~is~~el~~~l~~~g 98 (101)
..+|.+++..++..+|
T Consensus 34 ~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 34 NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCcCHHHHHHHHHHcC
Confidence 4556666666665555
No 270
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=21.99 E-value=2e+02 Score=17.58 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccCC------C--------CcCHHHHHHHHHhhcc
Q psy15319 46 GPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDEG------G--------VINGEKIRGAMKLVRT 99 (101)
Q Consensus 46 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~------g--------~is~~el~~~l~~~g~ 99 (101)
..|+|+-.+....+.+.= .+..+-+...|+.+=.. . .+|..+|+++-..+|+
T Consensus 101 DIVDfdKLl~~t~~LL~F--mdN~~~Id~~W~L~V~~sgr~~~~~~v~l~~h~LslkDLqkik~~l~l 166 (170)
T PF08730_consen 101 DIVDFDKLLRNTYRLLIF--MDNEEHIDESWKLFVTASGRDTQFPNVELKNHVLSLKDLQKIKNSLNL 166 (170)
T ss_pred ceeeHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhcCCCCCCcchhhhhceechHHHHHHHHHhCC
Confidence 457777777666655543 46666677777666222 2 2888999998887775
No 271
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=21.98 E-value=1e+02 Score=14.09 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=6.8
Q ss_pred HHHHHHHHHhCCCCCHH
Q psy15319 19 ADLIKIFDTVGKLVTDK 35 (101)
Q Consensus 19 ~e~~~~l~~~~~~~~~~ 35 (101)
+++..+-+..|+..+..
T Consensus 30 ~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 30 EEVVALAREAGYDFTEE 46 (49)
T ss_pred HHHHHHHHHcCCCCCHH
Confidence 33333333444444433
No 272
>PF13310 Virulence_RhuM: Virulence protein RhuM family
Probab=21.98 E-value=1e+02 Score=20.22 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=7.7
Q ss_pred CCcCHHHHHHH
Q psy15319 83 GVINGEKIRGA 93 (101)
Q Consensus 83 g~is~~el~~~ 93 (101)
|.||.+.-...
T Consensus 229 GkIS~e~A~~k 239 (260)
T PF13310_consen 229 GKISHEQAKEK 239 (260)
T ss_pred ChhhHHHHHHH
Confidence 88888765543
No 273
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=21.80 E-value=93 Score=15.29 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.3
Q ss_pred CcCHHHHHHHHHhhcc
Q psy15319 84 VINGEKIRGAMKLVRT 99 (101)
Q Consensus 84 ~is~~el~~~l~~~g~ 99 (101)
.++.+++...|..+|+
T Consensus 18 ~i~~~ei~~~L~~lg~ 33 (71)
T smart00874 18 DLSAEEIEEILKRLGF 33 (71)
T ss_pred CCCHHHHHHHHHHCCC
Confidence 4677777777777764
No 274
>KOG2303|consensus
Probab=21.80 E-value=1.8e+02 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.6
Q ss_pred cCCCCCCcccHHHHHHHHH
Q psy15319 8 MDADKDGILGKADLIKIFD 26 (101)
Q Consensus 8 ~D~~~~g~i~~~e~~~~l~ 26 (101)
-|.|.-|-|+.-+++..|+
T Consensus 534 ADINPIGgISK~DLr~Fl~ 552 (706)
T KOG2303|consen 534 ADINPIGGISKTDLRRFLQ 552 (706)
T ss_pred cccCCccCccHHHHHHHHH
Confidence 3667789999999988876
No 275
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=21.61 E-value=2.3e+02 Score=18.14 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHH-HhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHhhhcC
Q psy15319 12 KDGILGKADLIKIFD-TVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFANRMSG 63 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~~~~~ 63 (101)
..+.|+..+++..|. .+|..- ...+-.++.. =.|+++-.||-..+...+..
T Consensus 5 ~~~Ridl~~lk~~l~~~LG~~~-~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~ 57 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLGPDR-WKKYFQSLKRFLSGKLSKEEFDKECRRILGR 57 (252)
T ss_pred cccccCHHHHHHHHHHHHChHH-HHHHHHHHHHHHHhccCHHHHHHHHHHHhCh
Confidence 456677777766544 445222 2222223333 57888888888777666544
No 276
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=21.57 E-value=2.6e+02 Score=20.34 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=27.4
Q ss_pred CcCHHHHHHHHH-hhhcCCCCCcHHH-HHHHHHhccCC--CCcCHHHHHHHHHhh
Q psy15319 47 PINFTQLLSLFA-NRMSGGATDDDEV-VVAAFRAFDEG--GVINGEKIRGAMKLV 97 (101)
Q Consensus 47 ~i~~~ef~~~l~-~~~~~~~~~~~~~-~~~~f~~~D~~--g~is~~el~~~l~~~ 97 (101)
+.+..||=.++. +.+.- .+.++. +.-+|+..|.+ =-|+..+|+.+|.-+
T Consensus 105 RaTvsemGPlLLsrlL~L--NdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLEL--NDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred EeeHHhhchHHHHHHhcc--chHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 355666644443 33332 333333 44457777766 557777777777654
No 277
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.20 E-value=3.2e+02 Score=19.60 Aligned_cols=44 Identities=14% Similarity=0.430 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHhh
Q psy15319 17 GKADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFANR 60 (101)
Q Consensus 17 ~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~~ 60 (101)
..-|+..++.......++++...+... ..|..++++|...+...
T Consensus 295 GMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m 339 (451)
T COG0541 295 GMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQM 339 (451)
T ss_pred CcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334455555555555555556666555 67889999999888543
No 278
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=21.19 E-value=1.1e+02 Score=15.98 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=9.2
Q ss_pred cCHHHHHHHHHhhccC
Q psy15319 85 INGEKIRGAMKLVRTF 100 (101)
Q Consensus 85 is~~el~~~l~~~g~~ 100 (101)
+|.+.+++++...|+|
T Consensus 58 ~~~~~v~~II~~~~LF 73 (87)
T PF14297_consen 58 VSEEYVEEIINEYGLF 73 (87)
T ss_pred cCHHHHHHHHHHhCCc
Confidence 4555566666655554
No 279
>KOG3197|consensus
Probab=21.16 E-value=2.1e+02 Score=17.97 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHhccCC-CCcCHHHHH
Q psy15319 67 DDDEVVVAAFRAFDEG-GVINGEKIR 91 (101)
Q Consensus 67 ~~~~~~~~~f~~~D~~-g~is~~el~ 91 (101)
+..+.+.++|++=.+. |.+...+|-
T Consensus 154 DK~eMi~QafEYE~~~ng~~~lq~F~ 179 (210)
T KOG3197|consen 154 DKFEMIVQAFEYEKKHNGEKDLQQFF 179 (210)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHH
Confidence 3345667777666555 555555444
No 280
>PHA02952 EEV maturation protein; Provisional
Probab=20.90 E-value=2.9e+02 Score=20.84 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHhccCCCCcCHHHHHHHHHhhcc
Q psy15319 52 QLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVINGEKIRGAMKLVRT 99 (101)
Q Consensus 52 ef~~~l~~~~~~~~~~~~~~~~~~f~~~D~~g~is~~el~~~l~~~g~ 99 (101)
-++.++...- ...+++..++......|..|..|+.++|..-|+
T Consensus 100 PLlDILkkRa-----~~~~dL~~Al~~~~~~~~~svseiN~WL~~~GL 142 (648)
T PHA02952 100 PLLDILKKRA-----EELDDLAAALEKLGPEGNVSISEINYWLSDNGL 142 (648)
T ss_pred cHHHHHHHHh-----cccHHHHHHHHhcCCccCCCHHHHHHHHHhcCH
Confidence 3566665432 334678888888544499999999999999886
No 281
>PRK06526 transposase; Provisional
Probab=20.70 E-value=2.5e+02 Score=18.11 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHh
Q psy15319 19 ADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFAN 59 (101)
Q Consensus 19 ~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~ 59 (101)
.++...++.++.+--...+...... .....+|.||+..+..
T Consensus 3 ~~l~~~l~~LrL~~~~~~~~~~~~~a~~~~~~~~e~l~~ll~ 44 (254)
T PRK06526 3 SELAYLTRALKAPTLAGAVERLAERARAESWSHEEFLAACLQ 44 (254)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 3466677777776544555555444 6788999999887753
No 282
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=20.62 E-value=2e+02 Score=17.07 Aligned_cols=87 Identities=11% Similarity=0.199 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCC-----HHHHHHHHHh------CCCCcCHHHHHHHHHhhhcCCCCCcHHHHHHHHHhcc
Q psy15319 12 KDGILGKADLIKIFDTVGKLVT-----DKEVDDMLAE------ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFD 80 (101)
Q Consensus 12 ~~g~i~~~e~~~~l~~~~~~~~-----~~~~~~~~~~------~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~f~~~D 80 (101)
-+|.++..+.+.++..+.-.+. ..++...++. .+..+..-+-+..+.....+ ....+..+.-+.-..+
T Consensus 37 adg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~lk~d-~e~Ae~vL~vAv~VA~ 115 (144)
T COG3793 37 ADGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDLKHD-TEAAEDVLRVAVAVAE 115 (144)
T ss_pred cccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCC-hHHHHHHHHHHHHHhh
Confidence 3677888888887775543322 2233334443 23333344444444222222 0113344566666666
Q ss_pred CCCCcCHHH---HHHHHHhhcc
Q psy15319 81 EGGVINGEK---IRGAMKLVRT 99 (101)
Q Consensus 81 ~~g~is~~e---l~~~l~~~g~ 99 (101)
.||..+.+| +.+++..+|+
T Consensus 116 aDG~~d~~E~avl~eI~~aLGL 137 (144)
T COG3793 116 ADGEFEAEERAVLREIAGALGL 137 (144)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 678888666 7788888875
No 283
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=20.54 E-value=1.1e+02 Score=15.66 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=8.3
Q ss_pred CHHHHHHHHHhhcc
Q psy15319 86 NGEKIRGAMKLVRT 99 (101)
Q Consensus 86 s~~el~~~l~~~g~ 99 (101)
|.-+|.+.|...|+
T Consensus 47 s~~eF~~~L~~~gI 60 (76)
T PF03683_consen 47 SRWEFLELLKERGI 60 (76)
T ss_pred CHHHHHHHHHHCCC
Confidence 55566666666555
No 284
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.40 E-value=1.8e+02 Score=16.50 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15319 31 LVTDKEVDDMLAEATGPINFTQLLSLF 57 (101)
Q Consensus 31 ~~~~~~~~~~~~~~~g~i~~~ef~~~l 57 (101)
+-+..+++.++....-.++-++.-.++
T Consensus 79 P~t~~ElRsIla~e~~~~s~E~l~~Il 105 (114)
T COG1460 79 PRTPDELRSILAKERVMLSDEELDKIL 105 (114)
T ss_pred CCCHHHHHHHHHHccCCCCHHHHHHHH
Confidence 346667777666644444555444443
No 285
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.23 E-value=1.6e+02 Score=15.68 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHh--CCCCcCHHHHHHHHH
Q psy15319 13 DGILGKADLIKIFDTVGKLVTDKEVDDMLAE--ATGPINFTQLLSLFA 58 (101)
Q Consensus 13 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--~~g~i~~~ef~~~l~ 58 (101)
.|.++.++...+.. .....+....++.. ..|.-.|..|+.++.
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 35666655444332 22233444444444 566677777777763
No 286
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.22 E-value=1.9e+02 Score=16.67 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=6.7
Q ss_pred cccHHHHHHHHHHhCC
Q psy15319 15 ILGKADLIKIFDTVGK 30 (101)
Q Consensus 15 ~i~~~e~~~~l~~~~~ 30 (101)
.+|.+++...|+.-+.
T Consensus 33 h~sa~eI~~~l~~~~~ 48 (148)
T PRK09462 33 HVSAEDLYKRLIDMGE 48 (148)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 4444444444443333
No 287
>PRK09183 transposase/IS protein; Provisional
Probab=20.10 E-value=2.6e+02 Score=18.02 Aligned_cols=42 Identities=5% Similarity=0.080 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHh
Q psy15319 18 KADLIKIFDTVGKLVTDKEVDDMLAE-ATGPINFTQLLSLFAN 59 (101)
Q Consensus 18 ~~e~~~~l~~~~~~~~~~~~~~~~~~-~~g~i~~~ef~~~l~~ 59 (101)
..++...|+.++..--...+...... .....++.||+..+..
T Consensus 6 ~~~l~~~l~~LkL~~~~~~~~~~~~~~~~~~~~~~e~l~~ll~ 48 (259)
T PRK09183 6 HQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLH 48 (259)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 34577788888887666666665555 6788999999988753
No 288
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=20.03 E-value=95 Score=14.55 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=8.6
Q ss_pred CcCHHHHHHHHHhhcc
Q psy15319 84 VINGEKIRGAMKLVRT 99 (101)
Q Consensus 84 ~is~~el~~~l~~~g~ 99 (101)
.+|.+++++++..+|-
T Consensus 9 ~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 9 DVTEEELRDFFSQFGK 24 (70)
T ss_dssp TSSHHHHHHHHHTTST
T ss_pred cCCHHHHHHHHHHhhh
Confidence 3455555555555543
Done!