RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15319
(101 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 48.8 bits (117), Expect = 1e-08
Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE---ATGPINFTQLLSLF 57
+ + F L D D DG++ + +L KI ++G ++ E++ + E ++F + L++
Sbjct: 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVM 81
Query: 58 ANRMSGGATDDDEVVVAAFRAFDEGG 83
+ ++ G +++ + AF+ FD+
Sbjct: 82 SVKLKRGDKEEE--LREAFKLFDKDH 105
Score = 29.6 bits (67), Expect = 0.20
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT----GPINFTQLLSLFA 58
+ F L D D DG + +L ++ ++G+ ++D+EV+ +L E G I++ + F
Sbjct: 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEE----FK 151
Query: 59 NRMSGGATD 67
+ T
Sbjct: 152 KLIKDSPTI 160
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 46.3 bits (110), Expect = 1e-07
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDML----AEATGPINFTQLLSLFANR 60
F+L D D DG + +L + ++G+ T+ E+ DM+ A+ G I+F + L+L A +
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76
Query: 61 MSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAM 94
M TD +E + AF+ FD G I+ ++R M
Sbjct: 77 MKD--TDSEEEIKEAFKVFDRDGNGFISAAELRHVM 110
Score = 33.6 bits (77), Expect = 0.007
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F + D D +G + A+L + +G+ +TD+EVD+M+ EA G IN+ + + + ++
Sbjct: 90 FKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 32.9 bits (76), Expect = 0.003
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
F L D D DG + +L ++G+ ++++E+D+M+ E
Sbjct: 6 FRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREV 45
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 27.3 bits (61), Expect = 0.47
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 6 ALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43
L+D D DG + +L K+ +G +TD+EV++++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEA 38
>gnl|CDD|183152 PRK11470, PRK11470, hypothetical protein; Provisional.
Length = 200
Score = 27.8 bits (62), Expect = 0.90
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 28 VGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGGA 65
VG ++ D ++AE+ P++ LS F R +
Sbjct: 38 VGIIIGHNGEDFLVAESRVPLSTVTTLSRFIKRSANQR 75
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 27.0 bits (60), Expect = 1.3
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
+ K F L D DK G + +L ++ +G+ +TD+E+ +M+ EA
Sbjct: 92 ILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA 135
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 24.9 bits (55), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 5 FALMDADKDGILGKADLIKIFDTVG 29
F L D D DG + +L K ++G
Sbjct: 6 FKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 26.7 bits (60), Expect = 2.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 19 ADLIKIFDTVGKLVTDKEVDDMLAEATG 46
L+ + + + V DKE+ L E G
Sbjct: 484 GTLLSAMENIARFVQDKELKKTLKETDG 511
>gnl|CDD|234512 TIGR04228, isopep_sspB_C2, adhesin isopeptide-forming domain,
sspB-C2 type. This domain has a conserved Lys
(position 3 in seed alignment) and Asn at 177 that form
an intramolecular isopeptide bond. The Asp (or Glu) at
position 59.
Length = 173
Score = 26.1 bits (58), Expect = 2.7
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 3 KGFALMDADKDGIL-GKADLIKIFDTVGKLVTDK 35
KGF +D + L I I D+ GK VT
Sbjct: 47 KGFGYVDDYDEEALTVDDKKITITDSNGKDVTGL 80
>gnl|CDD|182490 PRK10478, PRK10478, putative PTS system fructose-like transporter
subunit EIIC; Provisional.
Length = 359
Score = 26.3 bits (58), Expect = 2.8
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 22 IKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE 81
I I VG L+T + L E G T L+ + M G+ V++ AFD
Sbjct: 135 IFIIPIVGTLITAGIMMWGLGEPIG--ALTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDM 192
Query: 82 GGVIN 86
GG +N
Sbjct: 193 GGPVN 197
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 26.2 bits (57), Expect = 3.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 18 KADLIKIFDTVGKLVTDKEVDDMLA 42
K K+ DT+G+ ++DKE+ M+A
Sbjct: 327 KEKYDKLVDTMGRRLSDKEISKMVA 351
>gnl|CDD|234859 PRK00893, PRK00893, aspartate carbamoyltransferase regulatory
subunit; Reviewed.
Length = 152
Score = 25.5 bits (57), Expect = 4.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 10/38 (26%)
Query: 16 LGKADLIKIFDTVGKLVTDKEVDDMLA----EATGPIN 49
LG+ D+IKI + ++++EV D LA AT IN
Sbjct: 52 LGRKDIIKI---ENRFLSEEEV-DQLALIAPNAT--IN 83
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is
the NAD+-dependent, betaine aldehyde dehydrogenase
(BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved
in the synthesis of the osmoprotectant glycine betaine
from choline or glycine betaine aldehyde.
Length = 482
Score = 25.7 bits (57), Expect = 4.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 63 GGATDDDEVVVAAFRAFDEGG 83
G A D + AA RAFD G
Sbjct: 32 GTAEDAKRAIAAARRAFDSGE 52
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 25.3 bits (56), Expect = 6.9
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 23 KIFDTVGKLVTDKEVDDMLAEATGP-INFTQLLSLFANRMSGGATDD 68
+IFD V + V M P I+ QL++ + +
Sbjct: 810 RIFDAVDIYEALESVTTMKPVVVNPNISLEQLVNELTDADGESHAEH 856
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain,
uncharacterized subfamily 5. gap in seq This family is
a member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 312
Score = 25.3 bits (56), Expect = 7.1
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Query: 55 SLFANRMSG--GATDDDEVVVAAF-RAFDEG 82
+L A R+ G G+T +D ++AAF RA+++G
Sbjct: 95 TLGAYRVFGCSGSTTED-TIIAAFLRAYEDG 124
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 25.2 bits (55), Expect = 7.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 56 LFANRMSGGATDDDEVVVAAFRAFDEG 82
+ A+ G A D + V AA +AFDEG
Sbjct: 85 VIAHVAEGDAEDVNRAVAAARKAFDEG 111
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase
PDB structure, 3B4W, and the Mycobacterium
tuberculosis H37Rv aldehyde dehydrogenase AldA (locus
Rv0768) sequence, as well as the Rhodococcus
rhodochrous ALDH involved in haloalkane catabolism, and
other similar sequences, are included in this CD.
Length = 471
Score = 25.2 bits (56), Expect = 8.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 63 GGATDDDEVVVAAFRAFDEG 82
D D V AA RAFD G
Sbjct: 33 ATPADVDAAVAAARRAFDNG 52
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 and also, the
Mycobacterium tuberculosis H37Rv ALDH AldA (locus
Rv0768) sequence; and other similar sequences, are
included in this CD.
Length = 459
Score = 24.9 bits (55), Expect = 9.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 63 GGATDDDEVVVAAFRAFDEG 82
GA D D + AA RAFD G
Sbjct: 16 AGAADVDAAIAAARRAFDTG 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.381
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,320,623
Number of extensions: 467367
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 50
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)