RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15319
(101 letters)
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 85.8 bits (213), Expect = 1e-22
Identities = 42/92 (45%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
F L+D DKDG + K D+ FD++G+L T++E+D M+AEA GPINFT L++F +R++G
Sbjct: 63 FQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRIAG- 121
Query: 65 ATDDDEVVVAAFRAFDEG-GVINGEKIRGAMK 95
TD+++V+V AF FDEG G E ++ ++
Sbjct: 122 -TDEEDVIVNAFNLFDEGDGKCKEETLKRSLT 152
Score = 36.9 bits (86), Expect = 3e-04
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ F L D + DG + L + T G+ + EVD L+EA G I+ +
Sbjct: 128 IVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKK---- 182
Query: 57 FANRMSGGATDDD 69
FA ++ GA ++
Sbjct: 183 FAQILTKGAKEEG 195
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 76.8 bits (190), Expect = 1e-19
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
F ++D ++DG + K DL + ++GK TD+ ++ M++EA GPINFT L++F +++G
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNG- 71
Query: 65 ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
TD ++V+ AF FDE G I+ + +R +
Sbjct: 72 -TDPEDVIRNAFACFDEEASGFIHEDHLRELLT 103
Score = 35.9 bits (84), Expect = 5e-04
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ FA D + G + + L ++ T+G TD+EVD+M EA G N+ +
Sbjct: 78 IRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVE---- 133
Query: 57 FANRMSGGA 65
F + GA
Sbjct: 134 FTRILKHGA 142
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 76.8 bits (190), Expect = 1e-19
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
F+++D D+DG + K D+ I + +G+ DKE+ ML EA GP+NFT LS+F++++SG
Sbjct: 24 FSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSG- 82
Query: 65 ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
TD +E + AF FDE +N E I+ ++
Sbjct: 83 -TDSEETIRNAFAMFDEQETKKLNIEYIKDLLE 114
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA---TGPINFTQLLSLF 57
+ FA+ D + L + + + +G E+ EA G ++ + F
Sbjct: 89 IRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGKFDYVK----F 144
Query: 58 ANRMSGGATDD 68
+ G ++
Sbjct: 145 TAMIKGSGEEE 155
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 75.6 bits (187), Expect = 4e-19
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
F ++D D+DG +G DL +F ++G++ D E++ ML E G +NFT L+LF ++SG
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSG- 80
Query: 65 ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
TD ++ + AF FDE G I + ++ ++
Sbjct: 81 -TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLE 112
Score = 38.7 bits (91), Expect = 5e-05
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA---TGPINFTQLLSLF 57
+ F++ D D G + + L + + +G + +E+ ++ +A N+ +
Sbjct: 87 LRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQFNYNK----M 142
Query: 58 ANRMSGGATDD 68
+ +D
Sbjct: 143 VDIKGKAEDED 153
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 71.9 bits (177), Expect = 1e-17
Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKL-VTDKEVDDMLAEATGPINFTQLLSLFANRMSG 63
F ++D + DGI+ K DL + F +G+L V ++E+D M+ EA+GPINFT L++F ++ G
Sbjct: 31 FTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 90
Query: 64 GATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
D ++V++ AF+ D G I + +
Sbjct: 91 --ADPEDVIMGAFKVLDPDGKGSIKKSFLEELLT 122
Score = 41.0 bits (97), Expect = 7e-06
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ F ++D D G + K+ L ++ T G T +E+ +M A G +++
Sbjct: 97 IMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKN---- 152
Query: 57 FANRMSGGATDDDE 70
++ G + E
Sbjct: 153 ICYVITHGEDAEGE 166
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 59.8 bits (146), Expect = 4e-13
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F L D+++ G + K L + G V ++M EA G I F + LS+ R
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRR 71
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M T ++++ AFR FD G I ++ A+
Sbjct: 72 MKQ--TTSEDILRQAFRTFDPEGTGYIPKAALQDALL 106
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA---TGPINF 50
+ + F D + G + KA L +G + E + L G I +
Sbjct: 81 LRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETEKGQIRY 133
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 56.4 bits (137), Expect = 8e-12
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
F+L D G + K + + G+ T E+ ++ + ++ Q L +
Sbjct: 11 FSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFD 70
Query: 65 ATDDDEVVVAAFRAFD-EG-GVINGEKIRGAMK 95
D E V F+ FD + G+I ++R +
Sbjct: 71 MPGDPEEFVKGFQVFDKDATGMIGVGELRYVLT 103
Score = 32.9 bits (76), Expect = 0.006
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA---TGPINF 50
KGF + D D G++G +L + ++G+ ++++E+D++L G +N+
Sbjct: 78 FVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNY 130
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 55.2 bits (134), Expect = 2e-11
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D + DG + ++ + ++ + + G I+ + + +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Query: 61 MSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMK 95
+DD + ++ D G + E++ K
Sbjct: 66 QGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFK 102
Score = 25.6 bits (57), Expect = 2.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
+ LMD D DG L K ++ F G ++V + + +A
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKA 116
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 55.2 bits (134), Expect = 2e-11
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA-TGPINFTQLLSLFANRMSG 63
F + D D DG + +L ++GK T+ E++ + + + +++ +
Sbjct: 11 FQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPI-K 69
Query: 64 GATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
T+ + ++ AFRA D+ G I ++R +
Sbjct: 70 TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLL 103
Score = 32.9 bits (76), Expect = 0.006
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
M F +D + +G + +A+L ++ +G +T EV++++ E G IN+
Sbjct: 78 MLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINY 131
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 55.2 bits (134), Expect = 3e-11
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F+L D + DG L +L +G + +E+ D++ E + + + +
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ D + + AF+ FD+ G I+ + +R K
Sbjct: 89 IL--KRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAK 123
Score = 32.1 bits (74), Expect = 0.012
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+ + F L D D G + +L ++ +G+ +TD+E+ M+ E G IN
Sbjct: 98 IKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINE 151
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 54.9 bits (133), Expect = 3e-11
Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
+ G + + +G + + + + + Q L + +
Sbjct: 21 IYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLSICVHD- 79
Query: 65 ATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
D+ E ++ F FD G + +++ +
Sbjct: 80 -KDNVEELIKMFAHFDNNCTGYLTKSQMKNILT 111
Score = 35.3 bits (82), Expect = 8e-04
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT--GPINF 50
+ K FA D + G L K+ + I T G +TD+E D L + I++
Sbjct: 86 LIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSEDNIDY 137
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 51.6 bits (124), Expect = 1e-09
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D D L + + +G ++ E + + + +G ++ + L
Sbjct: 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPP 102
Query: 61 MSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMK 95
MS + V+ AAF D GV+ + +RG
Sbjct: 103 MS---QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYS 136
Score = 31.9 bits (73), Expect = 0.016
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDT-------VGKLVTDKEVDDMLAEA-----TGPI 48
++ FA +D DG++ DL ++ G+ D+ + L G +
Sbjct: 111 IAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQV 170
Query: 49 NFTQLLSLFANRMSGGATDDDEVVVAAFRAF 79
+ ++ +S D+E V A+
Sbjct: 171 TLAEFQDYYSG-VSASMNTDEEFVAMMTSAW 200
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 51.4 bits (124), Expect = 1e-09
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D D G L +++ +G ++ +L + +G I++T L+ ++
Sbjct: 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDK 122
Query: 61 MSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
+ EV + F+ FD G I+ E+++
Sbjct: 123 QT---YLKKEVCLIPFKFFDIDGNGKISVEELKRIFG 156
Score = 29.1 bits (66), Expect = 0.16
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 1 MSKGFALMDADKDGILGKADLIKIF--DTVGKLVTDKEVDDMLAEA 44
F D D +G + +L +IF D + + DK +D +L E
Sbjct: 131 CLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 50.5 bits (122), Expect = 2e-09
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F L DAD G + +L +G +E+ M++E TG +NF L++ +
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQK 71
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
MS D E ++ AF+ FD+ G I+ + ++ K
Sbjct: 72 MS--EKDTKEEILKAFKLFDDDETGKISFKNLKRVAK 106
Score = 31.3 bits (72), Expect = 0.024
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+ K F L D D+ G + +L ++ +G+ +TD+E+ +M+ EA G ++
Sbjct: 81 ILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 134
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 50.2 bits (121), Expect = 2e-09
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA------TGPINFTQLLSLFA 58
F L D D + + + I +G+ T+ E++ +L I F + L +
Sbjct: 14 FLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQ 73
Query: 59 NRMSGGATDDDEVVVAAFRAFD-EG-GVINGEKIRGAMK 95
+ E V R FD EG G + G ++R +
Sbjct: 74 AAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLA 112
Score = 33.7 bits (78), Expect = 0.004
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT---GPINF 50
+G + D + +G + A+L + T+G+ +T++EV++++ G IN+
Sbjct: 89 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQEDSNGCINY 139
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 49.8 bits (120), Expect = 3e-09
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
FAL D D DG + +L + ++G+ T+ E+ DM+ E G I+F + LSL A +
Sbjct: 16 FALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 75
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M D +E ++ AF+ FD G+I+ ++R M
Sbjct: 76 MK--EQDSEEELIEAFKVFDRDGNGLISAAELRHVMT 110
Score = 32.5 bits (75), Expect = 0.009
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+ + F + D D +G++ A+L + +G+ +TD EVD+M+ EA G IN+
Sbjct: 85 LIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 138
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 49.8 bits (120), Expect = 4e-09
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F+L D D DG + +L + ++G+ T+ E+ DM+ E G I+F + L++ A +
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M TD +E + AFR FD+ G I+ ++R M
Sbjct: 77 MK--DTDSEEEIREAFRVFDKDGNGYISAAELRHVMT 111
Score = 41.7 bits (99), Expect = 5e-06
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ + F + D D +G + A+L + +G+ +TD+EVD+M+ EA G +N+ + + +
Sbjct: 86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 145
Query: 57 FANRMSG-GATDDDEVVVAAFRAFDEGG 83
+ G GA EV+ RA +
Sbjct: 146 MTAKGGGGGAAARKEVIRNKIRAIGKMA 173
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 51.0 bits (122), Expect = 4e-09
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F+L D D DG + +L + ++G+ T+ E+ DM+ E G I+F + L++ A +
Sbjct: 318 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 377
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M TD +E + AFR FD+ G I+ ++R M
Sbjct: 378 MK--DTDSEEEIREAFRVFDKDGNGYISAAELRHVMT 412
Score = 34.9 bits (80), Expect = 0.002
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+ + F + D D +G + A+L + +G+ +TD+EVD+M+ EA G +N+
Sbjct: 387 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 440
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 49.5 bits (119), Expect = 5e-09
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F L D D G + +L +G +E+ M++E +G I+F + L++ +
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK 93
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M D E ++ AFR FD+ G I + +R K
Sbjct: 94 MG--ERDSREEILKAFRLFDDDNSGTITIKDLRRVAK 128
Score = 31.4 bits (72), Expect = 0.024
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+ K F L D D G + DL ++ +G+ +T++E+ +M+AEA I+
Sbjct: 103 ILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 156
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 49.1 bits (118), Expect = 8e-09
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F + DAD G + +L + +G+ T +E+D ++ E +G I+F + L + +
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85
Query: 61 MSG-GATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M +E + FR FD+ G I+ E++ ++
Sbjct: 86 MKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILR 123
Score = 30.6 bits (70), Expect = 0.039
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
++ F + D + DG + +L +I G+ VT+++++D++ ++ G I+F
Sbjct: 98 LANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDF 151
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 48.6 bits (117), Expect = 1e-08
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
FAL D D G + ++L + ++G ++ EV D++ E I F++ L+L + +
Sbjct: 17 FALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQ 76
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ D ++ ++ AF+ FD+ G+I+ +++ +
Sbjct: 77 LK--CNDSEQELLEAFKVFDKNGDGLISAAELKHVLT 111
Score = 32.8 bits (76), Expect = 0.007
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA---TGPINF 50
+ + F + D + DG++ A+L + ++G+ +TD EVD+ML E +G IN
Sbjct: 86 LLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINI 138
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 48.0 bits (115), Expect = 2e-08
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA------TGPINFTQLLSLFA 58
F L D DG + + + +G+ T+ EV +L + ++F L +
Sbjct: 16 FELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQ 75
Query: 59 NRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
E + FR FD+ G + G ++R +
Sbjct: 76 AVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLT 114
Score = 33.3 bits (77), Expect = 0.004
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT---GPINF 50
+GF + D + +G + A+L + T+G+ +T++EV+ +LA G IN+
Sbjct: 89 YLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINY 141
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 48.0 bits (115), Expect = 3e-08
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F ++D D G + +L VG + + E+ D++ A +G I++ + ++ +
Sbjct: 16 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHL 75
Query: 61 MSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
+ +E +V+AF FD+ G I ++I+ A K
Sbjct: 76 NK---LEREENLVSAFSYFDKDGSGYITLDEIQQACK 109
Score = 34.1 bits (79), Expect = 0.002
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ F+ D D G + ++ + G + D +DDM+ E G I++ + ++
Sbjct: 84 LVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYGEFAAM 141
Query: 57 FANRMSGGATDDDEV-----VVAAFRAFDEG--GVINGEKIRGAM 94
R G + + A D G VI G
Sbjct: 142 MRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHHHH 186
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 47.1 bits (113), Expect = 3e-08
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F D DKDG + DL T+G + T+ E+ ++ + G ++F + L +
Sbjct: 17 FREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPK 76
Query: 61 MSGGATDDD--EVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ D + + AFR FD G I+ ++R AM+
Sbjct: 77 LLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMR 115
Score = 26.0 bits (58), Expect = 1.8
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTV-GKLVTDKEVDDMLAEA----TGPINF 50
+ F D + DG + ++L + + G V +++++++ + G ++F
Sbjct: 90 LRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDF 144
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 46.4 bits (111), Expect = 9e-08
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F ++DADK G + +L VG + + E+ D++ A +G I++ + ++ +
Sbjct: 33 FNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHL 92
Query: 61 MSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
+ ++ + AAF FD+ G I ++++ A +
Sbjct: 93 NK---IEREDHLFAAFTYFDKDGSGYITPDELQQACE 126
Score = 29.4 bits (67), Expect = 0.13
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
+ F D D G + +L + + G V D +++++ +
Sbjct: 101 LFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDV 142
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 44.6 bits (106), Expect = 5e-07
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 5 FALMDADKDGILGKADLIK-----------IFDTVGKLVTDKEVDDMLAEA----TGPIN 49
F +D + DG L + +LI+ + + EVD +L G I
Sbjct: 46 FRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIE 105
Query: 50 FTQLLSLFANRMSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
+++ +++ ++ E ++AAF+ FD G I E++
Sbjct: 106 YSEFVTVCMDKQ---LLLSRERLLAAFQQFDSDGSGKITNEELGRLFG 150
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
+ F D+D G + +L ++F V D+ +L E
Sbjct: 125 LLAAFQQFDSDGSGKITNEELGRLFGVTE--VDDETWHQVLQEC 166
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 42.9 bits (101), Expect = 6e-07
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+++ F D K + + + I + +++TD++ D + E G + + LS
Sbjct: 26 ITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSR 85
Query: 57 FANRMSGGATDDDEVVVA 74
F++ + + VA
Sbjct: 86 FSSETAATPMATGDSAVA 103
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 44.2 bits (105), Expect = 7e-07
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D + +G L ++ + +VG + +++ +L G I +T+ ++
Sbjct: 45 FYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNITYTEFMAGCYRW 102
Query: 61 MSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMK 95
+ + AAF D E G I+ I +
Sbjct: 103 K----NIESTFLKAAFNKIDKDEDGYISKSDIVSLVH 135
Score = 28.4 bits (64), Expect = 0.28
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
F +D D+DG + K+D++ + K++ + ++D+
Sbjct: 114 FNKIDKDEDGYISKSDIVSLV--HDKVLDNNDIDNFFLSV 151
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 43.4 bits (103), Expect = 8e-07
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDML-----AEATGPINFTQLLSLFAN 59
F L D G + K L +G T++ V D++ + Q+ L
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEV 69
Query: 60 RMSG---GATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
E V AF+ FD+ G ++ +R +
Sbjct: 70 NEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLT 110
Score = 33.3 bits (77), Expect = 0.004
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
K F + D + G + DL + +G+ +TD EVD++L G I++
Sbjct: 85 FVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDY 138
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 43.3 bits (103), Expect = 9e-07
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 5 FALMD-ADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFAN 59
F + + G + + I + +G T + ++ E G I+F + A
Sbjct: 19 FRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGAR 78
Query: 60 RMS--GGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ + + AFR +D+ G I+ + +R +
Sbjct: 79 FLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILA 118
Score = 31.4 bits (72), Expect = 0.025
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ + F L D + +G + + +I + + ++ +++D M+ E +G ++F +
Sbjct: 93 LREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEE---- 148
Query: 57 FANRMSGG 64
F M+GG
Sbjct: 149 FMGVMTGG 156
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 43.3 bits (103), Expect = 1e-06
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 5 FALMDA--DKDGILGKADLIKIFDTVGKLVTDKEVDDML---AEATGPINFTQLLSLFAN 59
F L D +DG + A + + +G T+ +V ++L ++
Sbjct: 15 FDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEEILPIYEE 74
Query: 60 RMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
S + + AF+ FD G+I+ +IR +K
Sbjct: 75 MSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLK 112
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA------TGPINFTQLLSL 56
+ F D + G++ A++ + +G+ +T+ + +D+ G I +
Sbjct: 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYED---- 144
Query: 57 FANRMSGGATDDDE 70
++ G D
Sbjct: 145 LMKKVMAGPFPDKS 158
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 43.4 bits (103), Expect = 1e-06
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F ++D D G + K L K + G L D +L + +G I++T+ ++ +R
Sbjct: 58 FLVLDEDGKGYITKEQLKKGLEKDG-LKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDR 116
Query: 61 MSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMK 95
+++ AFR FD G I ++ +
Sbjct: 117 K----QLSKKLIYCAFRVFDVDNDGEITTAELAHILY 149
Score = 26.4 bits (59), Expect = 1.3
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVT-----DKEVDDMLAEA 44
F + D D DG + A+L I K V M+ +
Sbjct: 128 FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDV 172
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 42.2 bits (100), Expect = 2e-06
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 5 FALMDAD-KDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFAN 59
F + +DG + +L K+ +G+ T +E+ +M+ E +G ++F + L +
Sbjct: 24 FDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR 83
Query: 60 RMSG-GATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M +E + FR FD+ G I+ E+++ ++
Sbjct: 84 SMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQ 122
Score = 30.2 bits (69), Expect = 0.062
Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+S F + D + DG + +L + G+ +T+ ++++++ + G I++
Sbjct: 97 LSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDY 150
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 39.9 bits (94), Expect = 8e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ + F + D D++G + ++L + +G+ +TD+EV+ M+ EA G +N+ + + +
Sbjct: 11 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM 70
Query: 57 FANRMSGGATDDDEVVVAAFRA 78
GG + + F +
Sbjct: 71 MMTVRGGGGGNGWSRLRRKFSS 92
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 40.6 bits (95), Expect = 9e-06
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ + D + +G + L ++ + +G T E+ M++E + I++ +++
Sbjct: 52 FKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNM 111
Query: 57 FANRMSGGATDDDEVVVAAFRAFDEGGVINGEKIRG 92
+ S V+ F+ + K G
Sbjct: 112 MLGKRSA--------VLKLVMMFEGKANESSPKPVG 139
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 38.9 bits (91), Expect = 2e-05
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
+ D + +G + L ++ + +G T E+ ++ E ++ L + +
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGK 97
Query: 61 MSG 63
S
Sbjct: 98 RSA 100
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 40.2 bits (94), Expect = 3e-05
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F G DL ++ + + + + G +++ L++
Sbjct: 128 FLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVA----- 182
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+D +VA FR D G ++ ++ R
Sbjct: 183 ----VANDLAALVADFRKIDTNSNGTLSRKEFREHFV 215
Score = 30.5 bits (69), Expect = 0.069
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ F +D + +G L + + + F +G D + A + + F++ + L
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFVRLG-FDKKSVQDALFRYADEDESDDVGFSEYVHL 248
Query: 57 FANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
V+ + D G ++ E+++ ++
Sbjct: 249 GLCL---------LVLRILYAFADFDKSGQLSKEEVQKVLE 280
Score = 28.2 bits (63), Expect = 0.39
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVG-KLVTDKEVDDMLAEA----TGPINF 50
+A D DK G L K ++ K+ + K+ + + + +++
Sbjct: 259 YAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSY 309
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 39.1 bits (92), Expect = 4e-05
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 5 FALMDA--DKDGILGKADLIKIFDTVGKLVTDKEVDDML---AEATGPINFTQLLSLFAN 59
F L D +DG + L + +G +++V + + F + L +
Sbjct: 15 FELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEG 74
Query: 60 RMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
M + AF+ FD G I+G ++R +
Sbjct: 75 LMDC-EQGTFADYMEAFKTFDREGQGFISGAELRHVLT 111
Score = 32.9 bits (76), Expect = 0.006
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA------TGPINFTQLL 54
+ F D + G + A+L + +G+ ++D++VD+++ G + +
Sbjct: 86 YMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYED-- 143
Query: 55 SLFANRMSGGATDD 68
F ++ G D
Sbjct: 144 --FVKKVMAGPYPD 155
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 37.5 bits (88), Expect = 4e-05
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F L D +K G + +L +G V E+ +++ E G I F L + +
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEK 72
Query: 61 MS 62
+
Sbjct: 73 IK 74
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 37.6 bits (88), Expect = 4e-05
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F L D D D L +L + +G T +++ +++ + +G + L++
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEY 79
Query: 61 MS 62
Sbjct: 80 GQ 81
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 38.8 bits (91), Expect = 5e-05
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D D G L + + + +L + V ++ G ++F + + +
Sbjct: 12 FKKLDLDNSGSLSVEEFMSL----PELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQF 67
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
D ++ + AFR +D G I+ ++ +K
Sbjct: 68 SV--KGDKEQKLRFAFRIYDMDKDGYISNGELFQVLK 102
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 39.0 bits (91), Expect = 6e-05
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 24/115 (20%)
Query: 5 FALMDADKDGILGKADLIKIFD-----TVGKLVTDKEVDDMLAEA---------TGPINF 50
F +D + +G + +++ + + + EA I F
Sbjct: 26 FDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 51 TQLLSLFANRMSGGATDDD--------EVVVAAFRAFDEG--GVINGEKIRGAMK 95
Q L + + E A F FD+ G I ++ + K
Sbjct: 86 PQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK 140
Score = 31.6 bits (72), Expect = 0.021
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
F + D D G + + G + ++ + G ++ +
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDE---- 170
Query: 57 FANRMSGGATDDDE 70
+ G D
Sbjct: 171 MTRQHLGFWYTLDP 184
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 36.7 bits (86), Expect = 8e-05
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ F D +KDG L + ++ T +++ E G +N + S
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
Query: 57 FANRM 61
+
Sbjct: 63 IEKML 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 1e-04
Identities = 31/145 (21%), Positives = 47/145 (32%), Gaps = 65/145 (44%)
Query: 4 GFALMDADKD----------GILGKADLIK------IFDTV--GKLVTDK---EVDDMLA 42
GF+++D + G GK I+ IF+T+ GKL T+K E+++
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKR--IRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 43 EAT--GPIN------FTQLLSLFANRMSGGATDDDEVVVAAFRAFDEGGVIN-------- 86
T FTQ +L M AAF G+I
Sbjct: 1716 SYTFRSEKGLLSATQFTQP-ALTL--ME----------KAAFEDLKSKGLIPADATFAGH 1762
Query: 87 --GE-----------KIRGAMKLVR 98
GE I +++V
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVF 1787
Score = 28.5 bits (63), Expect = 0.34
Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 16/57 (28%)
Query: 38 DDMLAEA--TGPINF-TQLLSL-------------FANRMSGGATDDDEVVVAAFRA 78
D L + P+ QL + + G +V A A
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Score = 27.3 bits (60), Expect = 0.81
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 36 EVDDMLAEATGPINFTQLLSLF----ANRMS-GGATDDDEVVVAAFRAFDEGGVINGEKI 90
E + A P +L+ F ++ + D+V+ F E + G I
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDI 101
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 36.6 bits (85), Expect = 3e-04
Identities = 14/116 (12%), Positives = 28/116 (24%), Gaps = 25/116 (21%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKL---------------VTDKEVDDMLAEA----T 45
F D D +G + ++D + + + A
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 46 GPINFTQLLSLFANRMSGGATDDDEVVV----AAFRAFDE--GGVINGEKIRGAMK 95
I + ++ R+ E+ AA D G + A+
Sbjct: 70 QRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Score = 29.3 bits (66), Expect = 0.14
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFA 58
+ D D DG + AD + G V + A G + T+++ FA
Sbjct: 104 LGVADTDGDGAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 37.2 bits (86), Expect = 3e-04
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 18/109 (16%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTD------KEVDDMLAEA----TGPINFTQLL 54
+ DAD G L +L + + + E+ + + G I +L
Sbjct: 22 WLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELA 81
Query: 55 SLFANRMSGGA------TDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ + E + +R +D G I E+++ +K
Sbjct: 82 HVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLK 130
Score = 36.8 bits (85), Expect = 4e-04
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 19/112 (16%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVT--------DKEVDDMLAEA----TGPINF 50
K + D D G + +L + + + D ML G +
Sbjct: 107 KTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLEL 166
Query: 51 TQLLSLFANRMSG-----GATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
T++ L + + G + AF +D+ G I+ ++ +K
Sbjct: 167 TEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLK 218
Score = 25.6 bits (56), Expect = 3.3
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAE 43
+K F L D D +G + + +L + + + + + ++
Sbjct: 193 FNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNIST 235
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 36.3 bits (84), Expect = 5e-04
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 24/115 (20%)
Query: 5 FALMDADKDGILGKADLIK-----IFDTVGKLVTDKEVDDMLAEA---------TGPINF 50
F +D + +G + +++ + + +G + EA ++
Sbjct: 22 FNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDW 81
Query: 51 TQLLSLFANRMS--------GGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ + + T A F D+ G I ++ + K
Sbjct: 82 PAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK 136
Score = 33.2 bits (76), Expect = 0.006
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
F ++D D++G + + G + + ++ ++
Sbjct: 115 FDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVC 154
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 35.3 bits (82), Expect = 5e-04
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F + DAD G + +L + +G+ T +E+D ++ E +G I+F + L + +
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85
Query: 61 MS 62
M
Sbjct: 86 MK 87
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 36.1 bits (84), Expect = 5e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 15/97 (15%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D D G + +L + G + + +L +G I F + L
Sbjct: 33 FRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI 92
Query: 61 MSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
+S + FR D G ++ ++R A+
Sbjct: 93 LS---------MREGFRKRDSSGDGRLDSNEVRAALL 120
Score = 30.7 bits (70), Expect = 0.051
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
M +GF D+ DG L ++ + G V+++ ++ + G + F + L
Sbjct: 95 MREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVEL 154
Query: 57 FANRMSGGATDDDEVVVAAFRAFDEGG 83
+ F +D
Sbjct: 155 SIFVCR--VRN-------VFAFYDRER 172
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 35.7 bits (82), Expect = 6e-04
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSL 56
+ D + +G + L ++ + +G T E+ ++ E +++ L +
Sbjct: 50 FKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRM 109
Query: 57 FANRMSG 63
+ S
Sbjct: 110 MLGKRSA 116
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 35.8 bits (83), Expect = 8e-04
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKL--------VTDKEVDDMLAEA----TGPI 48
++ F +D + DG L K +LI+ ++ + ++EVD++L E G I
Sbjct: 357 LTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYI 416
Query: 49 NFTQLLSLFANRMSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMKL 96
+++ +S+ M +E + AF FD + G I E++ L
Sbjct: 417 EYSEFISVC---MDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGL 463
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 35.1 bits (81), Expect = 0.001
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F +D D+ G L +L+ G ++ + M+ G I+F + ++++
Sbjct: 57 FMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM 116
Query: 61 MSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
E+ F G + +I A++
Sbjct: 117 ---------ELAYNLFVMNARARSGTLEPHEILPALQ 144
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/110 (10%), Positives = 32/110 (29%), Gaps = 19/110 (17%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVT-------------DKEVDDMLAEATGPINFT 51
+D DG + + D I + K+ + D + I+
Sbjct: 20 MQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVE 79
Query: 52 QLLSLFANRMSGGATDDDEVVV----AAFRAFDEG--GVINGEKIRGAMK 95
+ + + ++ + V + D G ++ + + ++
Sbjct: 80 EAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQ 129
Score = 35.1 bits (81), Expect = 0.001
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
+ +D DKDG + + VG +TD + G I+ + L +
Sbjct: 108 YDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDF 167
Query: 61 MSG 63
+ G
Sbjct: 168 LFG 170
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 34 DKEVDDMLAEA----TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFD--EGGVING 87
+ ML E + +L + A +M + + F E +I
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKM--DVEEFVSELCKGFSLLADPERHLITA 59
Query: 88 EKIRGAMK 95
E +R
Sbjct: 60 ESLRRNSG 67
Score = 31.2 bits (71), Expect = 0.028
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVG-KLVTDKEVDDMLAEA----TGPINFTQLLS 55
+ KGF+L+ + ++ L + +G + ++ ++ M+ E G +N T+
Sbjct: 42 LCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101
Query: 56 LFANRMSGGATDDDEVVVAAF 76
L D + + A
Sbjct: 102 LMVRLSPEMMEDAETWLEKAL 122
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 34.7 bits (80), Expect = 0.002
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVG--------KLVTDKEVDDMLAEA----TGPI 48
++ F +D + DG L + +LI + + + EVD +L A G I
Sbjct: 348 LTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYI 407
Query: 49 NFTQLLSLFANRMSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMKL 96
++++ +++ M + + + +AF+ FD G I+ +++ L
Sbjct: 408 DYSEFVTVA---MDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL 454
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 34.7 bits (80), Expect = 0.003
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 20/113 (17%)
Query: 1 MSKGFALMDADKDGILGKADLIK-----------IFDTVGKLVTDKEVDDMLAEA----T 45
++ F MD + DG L +A+LI+ + + EVD +L
Sbjct: 337 LTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKN 396
Query: 46 GPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMKL 96
G I +++ +++ M E + AFR FD G I+ ++ +
Sbjct: 397 GYIEYSEFVTVA---MDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGV 446
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 32.9 bits (76), Expect = 0.003
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFT 51
F ++D D G + +L VG + + E+ D++ A +G I++
Sbjct: 29 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG 79
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 34.0 bits (78), Expect = 0.003
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 23/114 (20%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLV--TDKEVDDMLAEA-----------TGPINFT 51
F D D DG + +++ D + +LV TD++V+ M +
Sbjct: 42 FDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE 101
Query: 52 QLLSLFANRMS--------GGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ G + + + + D+ G ++ ++++ MK
Sbjct: 102 DWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMK 155
Score = 28.6 bits (64), Expect = 0.30
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
+ ++D D DG + +L + V + +A
Sbjct: 134 YDVLDDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKA 171
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 32.2 bits (74), Expect = 0.007
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
+ F + D D +G + A+L + +G+ +TD+EVD+M+ EA G +N+
Sbjct: 33 EAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 84
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 33.0 bits (75), Expect = 0.007
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT----GPINFTQLLSLFANR 60
F MD DGI+ + + +V + T + + L+
Sbjct: 111 FKGMDVSGDGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
Query: 61 MSGGATD 67
++ A D
Sbjct: 169 LTSPAAD 175
Score = 25.3 bits (55), Expect = 3.5
Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 27/117 (23%)
Query: 6 ALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT-------------------G 46
+D + DG + D + ++ D
Sbjct: 16 FFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDD 75
Query: 47 PINFTQLLSLFANRMSGGATDDD------EVVVAAFRAFDEG--GVINGEKIRGAMK 95
+++ + L+++ ++ + D + F+ D G+++ E+ + K
Sbjct: 76 VVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCK 132
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 32.9 bits (75), Expect = 0.007
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT----GPINFTQLLSLFANR 60
F + D D I+ K + ++ + G + + D + + L+
Sbjct: 115 FDVNDTSGDNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARLWTEY 172
Query: 61 MSG 63
Sbjct: 173 FVS 175
Score = 27.1 bits (60), Expect = 0.86
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 27/118 (22%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKL---------------VTDKEVDDMLAEA----T 45
D + DG++ D + L D + A
Sbjct: 19 NTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENED 78
Query: 46 GPINFTQLLSLFANRMSGGATDDD------EVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ + L ++A + + + + F D +I+ +
Sbjct: 79 EQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYM 136
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 32.9 bits (75), Expect = 0.008
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 19/107 (17%)
Query: 5 FALMDADKDGILGKADLIK-IFDTVGKLVTDKEVDDMLAEAT-------------GPINF 50
F D ++ G L ++ + + V D+ A G +F
Sbjct: 54 FKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDF 113
Query: 51 TQLLSLFANRMSGGATDDDEVVVAAFRAFDEG--GVINGEKIRGAMK 95
+ L D + F D +++ E+ + A+
Sbjct: 114 VEFLEFRLMLCY---IYDFFELTVMFDEIDASGNMLVDEEEFKRAVP 157
Score = 27.6 bits (61), Expect = 0.61
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 5 FALMDADKDGILGKADLIKIFDTVG-KLVTDKEVDDMLAEA----TGPINFTQLLSLFAN 59
F +DA + ++ + + + + ++ + E TG + F + FA
Sbjct: 136 FDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDE----FAA 191
Query: 60 RMSGGATDDDE 70
S D D
Sbjct: 192 WASAVKLDADG 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.010
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 18/65 (27%)
Query: 8 MDADKDGI-LGKADLIKIF--------------DTVGKLVTDKEVDDMLAEATGPINFTQ 52
MD + D++ +F D +++ +E+D ++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS---KDAVSG 63
Query: 53 LLSLF 57
L LF
Sbjct: 64 TLRLF 68
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 31.0 bits (71), Expect = 0.010
Identities = 6/59 (10%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFAN 59
F +D + DG + ++ + ++ + + G I+ + + +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 32.7 bits (75), Expect = 0.012
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
F + D D G + +L K+F + +E++ ++ + G ++F
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDF 472
Score = 32.3 bits (74), Expect = 0.016
Identities = 16/116 (13%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 1 MSKGFALMDADKDGILGKADLIK--------------IFDTVGKLVTDKEVDDMLAEA-- 44
+++ F +D + DG+L + +L++ + ++D ++
Sbjct: 333 LTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDM 392
Query: 45 --TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMKL 96
+G I +++ ++ + E + AF+ FD G I+ +++
Sbjct: 393 DGSGSIEYSEFIASA---IDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQ 445
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 32.0 bits (73), Expect = 0.014
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA--TGPINFTQLLSLFA 58
+ F D D+ G + +L K T+G ++ + V+ + G I F ++
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCV 164
Query: 59 NRMSGGATDDDEVVVAAFRAFDEGG 83
+ TD +FR D
Sbjct: 165 KLRA--LTD-------SFRRRDTAQ 180
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 32.0 bits (73), Expect = 0.015
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVT-DKEVDDMLAEA--------------TGPIN 49
F +D DKDG + + D + + K E +L ++ I+
Sbjct: 12 FNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGID 71
Query: 50 FTQLLSLFANRMSGGATDD--DEVVVAAFRAFDEG--GVINGEKIRGAMK 95
T ++ + + + FRA D I+ ++
Sbjct: 72 ETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFG 121
Score = 29.7 bits (67), Expect = 0.088
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
F +D ++D + + + F +G +
Sbjct: 100 FRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAI 137
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 31.5 bits (72), Expect = 0.016
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ F +D D+ G L +L ++ F + + +T+ E ++ A
Sbjct: 43 VKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAA 89
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 32.0 bits (73), Expect = 0.018
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 24/107 (22%)
Query: 1 MSKGFALMDADKDGILGKADLIKIFDTV----GKLVTDKEVDDMLAEAT----------- 45
+ K F D D +G L +AD K + GK EV +
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAG 68
Query: 46 ----GPINFTQLLSLFANRMSGGATDDDEVVV-----AAFRAFDEGG 83
G + Q + + N + V+ D+
Sbjct: 69 VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNA 115
Score = 31.3 bits (71), Expect = 0.026
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEAT----GPINFTQLLSLFANR 60
+ D + DG + + +G ++ E + + G ++ +LL+ +
Sbjct: 108 VGMCDKNADGQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAVRDF 165
Query: 61 MSG 63
G
Sbjct: 166 HFG 168
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 31.1 bits (71), Expect = 0.021
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ K F ++D DK G + + +L +K F + + ++ KE ++A
Sbjct: 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 30.2 bits (69), Expect = 0.027
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 5 FALMDADKDGILGKADLIKIFDTVG-KLVTDKEVDDMLAEA----TGPINFTQLLSLFAN 59
F + DA+ DG++ + I VG + +TD EV++ + EA G I+ + F +
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPE----FMD 69
Query: 60 RMSGGATDDDE 70
+ E
Sbjct: 70 LIKKSKNALKE 80
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 31.3 bits (71), Expect = 0.034
Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMS 62
F +D ++G L + D +I + + D+ ++ +E +NF + A+
Sbjct: 33 SRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRP 92
Query: 63 GGATDD-------------DEVVVAAFRAFD--EGGVINGEKIRGAMK 95
+ + AFR +D + I+ +++ ++
Sbjct: 93 IEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLR 140
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 30.0 bits (68), Expect = 0.042
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
FA DA++ G L + + + + V + + + G I F + F
Sbjct: 33 FAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFARGFLGS 90
Query: 61 M 61
+
Sbjct: 91 L 91
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 30.9 bits (70), Expect = 0.047
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 3 KGFALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMS 62
F +D +K G L + DL +I + D+ ++ + + ++F + + A+
Sbjct: 33 HRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRP 92
Query: 63 GGATDDDEVVVA--------------AFRAFD 80
D + AF+ +D
Sbjct: 93 VEDEDTETQDPKKPEPLNSRRNKLHYAFQLYD 124
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 30.8 bits (69), Expect = 0.049
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 24/115 (20%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLV--TDKEVDDMLAEAT------------GPINF 50
+ DAD +G + +L F + K + DK D+ + + G +
Sbjct: 17 WQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQI 76
Query: 51 TQLLSLFANRMSG--------GATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
+L ++ + D+ + +R +D G I+ +++ +K
Sbjct: 77 EELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLK 131
Score = 29.3 bits (65), Expect = 0.15
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 23/118 (19%)
Query: 1 MSKGFALMDADKDGILGKADL--------IKIFDTVGKLVTDKEVDDMLAEA----TGPI 48
K + DAD G + A+L ++ + D+ D M+ G +
Sbjct: 106 FMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRL 165
Query: 49 NFTQLLSLFANR---------MSGGATDDDEVVVAAFRAFD--EGGVINGEKIRGAMK 95
+ L + A + + + F +D G + G ++ G +K
Sbjct: 166 DLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVK 223
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 30.0 bits (68), Expect = 0.067
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA--TGPINFTQLLSLFANRMS 62
F +D D G + +L + +G ++ + + ++ G I F ++ +
Sbjct: 76 FMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRA 135
Query: 63 GGATDDDEVVVAAFRAFDEGG 83
+ FR D
Sbjct: 136 ---------LTDFFRKRDHLQ 147
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.6 bits (67), Expect = 0.071
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ + F ++D D+ G + + +L ++ F++ +++T E LA A
Sbjct: 43 LKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAA 89
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 29.5 bits (67), Expect = 0.073
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 28 VGKLVTDKEVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE--GG 83
+ K++ +++ ++ G ++ + L + D V F D+ G
Sbjct: 2 MTKVLKADDINKAISAFKDPGTFDYKRFFHLVGLKG-----KTDAQVKEVFEILDKDQSG 56
Query: 84 VINGEKIRGAMK 95
I E+++G +K
Sbjct: 57 FIEEEELKGVLK 68
Score = 27.9 bits (63), Expect = 0.33
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ + F ++D D+ G + + +L +K F G+ + D E +LA
Sbjct: 43 VKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 29.1 bits (66), Expect = 0.076
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F D + DG + ++L T+G + EV M+AE G I+F + F +
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNE----FISF 63
Query: 61 MSGGATDDDEVVVAAFRAF 79
+ +V + F
Sbjct: 64 CNANPGLMKDV----AKVF 78
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 29.1 bits (66), Expect = 0.10
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ K F ++D DK G + + +L +++F + +TD E L
Sbjct: 44 IKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90
Score = 26.4 bits (59), Expect = 0.99
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 29 GKLVTDKEVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE--GGV 84
++ D +V L A N+ + G + + AF D+ G
Sbjct: 4 SGILADADVAAALKACEAADSFNYKAFFA-----KVGLTAKSADDIKKAFFVIDQDKSGF 58
Query: 85 INGEKIRGAMK 95
I ++++ ++
Sbjct: 59 IEEDELKLFLQ 69
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 28.7 bits (65), Expect = 0.13
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ K F +DAD G + + +L +K F G+ +TD E L A
Sbjct: 44 VKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90
Score = 28.7 bits (65), Expect = 0.16
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 31 LVTDKEVDDMLAE--ATGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE--GGVIN 86
L+ ++ L A G N + +L + V F+A D G I
Sbjct: 6 LLKADDIKKALDAVKAEGSFNHKKFFALVGLKA-----MSANDVKKVFKAIDADASGFIE 60
Query: 87 GEKIRGAMK 95
E+++ +K
Sbjct: 61 EEELKFVLK 69
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 28.2 bits (64), Expect = 0.14
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINF 50
F D D DG + +L + +G+ + +E+D M+ EA G +N+
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 28.4 bits (64), Expect = 0.17
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F D + DG + ++L T+G + T EV M+AE G I+F + F +
Sbjct: 17 FKRFDTNGDGKISSSELGDALKTLGSV-TPDEVRRMMAEIDTDGDGFISFDE----FTDF 71
Query: 61 MSGGATDDDEV 71
+V
Sbjct: 72 ARANRGLVKDV 82
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 29.2 bits (66), Expect = 0.18
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLSLFANRMSGG 64
L++A +G K+ D + + +++ ++F + F N S
Sbjct: 325 EQLIEAISNG--DFESYTKMCDPGMTAFEPEALGNLV----EGLDFHRFY--FENLWSRN 376
Query: 65 ATDDDEVVVAAFRAF--DEGGVINGEKIRGAMK 95
+ ++ DE I +I +
Sbjct: 377 SKPVHTTILNPHIHLMGDESACIAYIRITQYLD 409
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 28.7 bits (65), Expect = 0.22
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA----TGPINFTQLLSLFANR 60
F D D G++ K +L + G ++D+ D ++ + G I F +
Sbjct: 80 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL 139
Query: 61 MSGGATDDDEVVVAAFRAFD 80
+ FR +D
Sbjct: 140 QR---------LTDIFRRYD 150
Score = 28.4 bits (64), Expect = 0.31
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 16/98 (16%)
Query: 5 FALMDADKDGILGKADLIKIFDTVG-KLVTDKEVDDMLAEA----TGPINFTQLLSLFAN 59
F +D D+ G++ +L + V +++ +NF++ ++
Sbjct: 13 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY 72
Query: 60 RMSGGATDDDEVVVAAFRAFDE--GGVINGEKIRGAMK 95
FR +D G+I+ +++ A+
Sbjct: 73 ITD---------WQNVFRTYDRDNSGMIDKNELKQALS 101
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 28.4 bits (63), Expect = 0.25
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 5 FALMDADKDGILGKADLIKIF--------DTVGKLVTDKE----VDDMLAEA 44
F + D D + +L +L L+++ E +D +L +
Sbjct: 74 FKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDD 125
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 28.0 bits (63), Expect = 0.32
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ K F ++D DK G + + +L +K F + +++T E LA
Sbjct: 44 IKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.5 bits (62), Expect = 0.45
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 32 VTDKEVDDMLAEA--TGPINFTQLLSLFANRMSGGATDDDEVVVAAFRAFDE--GGVING 87
+ D +V LA + + G A+ + V AF D+ G I
Sbjct: 6 LKDADVAAALAACSAADSFKHKEFFA-----KVGLASKSLDDVKKAFYVIDQDKSGFIEE 60
Query: 88 EKIRGAMK 95
++++ ++
Sbjct: 61 DELKLFLQ 68
Score = 27.1 bits (61), Expect = 0.50
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 1 MSKGFALMDADKDGILGKADL---IKIFDTVGKLVTDKEVDDMLAEA 44
+ K F ++D DK G + + +L ++ F + +TD E LA+
Sbjct: 43 VKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 27.1 bits (61), Expect = 0.90
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 63 GGATDDDEVVVAAFRAFDEG 82
A D D V AA AFD G
Sbjct: 43 AAAADVDAAVAAARAAFDNG 62
>3opu_A SPAP; cell adhesion; 2.18A {Streptococcus mutans}
Length = 339
Score = 27.1 bits (59), Expect = 0.99
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 1 MSKGFALMD-ADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLL 54
+ KGF +D ++ + + DL+KI D G VT VD+ + P +L
Sbjct: 49 IQKGFYYVDDYPEEALELRQDLVKITDANGNEVTGVSVDNYTSLEAAPQEIRDVL 103
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 26.9 bits (60), Expect = 1.2
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 17 GKADLIKIFDTVGKLVTDKEVDDMLAEATG-PINFTQLLSLFANRMSGGATDDDEVVVAA 75
K + + D L T K + + + E G + +S A + V+
Sbjct: 70 FKIQMFRFVDVFPSLTTSKLLTEHIREYFGNEQDMPAFMSTGAKVAGMLGSFGGAVLNKV 129
Query: 76 FRA---FDEGGVINGEKIRGAMKLVRTFE 101
+ I GE + A+K +
Sbjct: 130 LTSNIEEMARQFIVGETTKEAVKNLEKLR 158
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 26.8 bits (60), Expect = 1.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 62 SGGATDDDEVVVAAFRAFDEG 82
A D + V AA +AFD G
Sbjct: 57 EASADDVRKAVAAARKAFDAG 77
>3qe5_A Antigen I/II, major cell-surface adhesin PAC; DE-variant
immunoglobulin-like fold, IGG-like fold, adherenc human
tooth, salivary agglutinin; HET: GLC; 2.50A
{Streptococcus mutans}
Length = 516
Score = 26.8 bits (58), Expect = 1.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MSKGFALMD-ADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGPINFTQLLS 55
+ KGF +D ++ + + DL+KI D G VT VD+ P +LS
Sbjct: 225 IQKGFYYVDDYPEEALELRQDLVKITDANGNEVTGVSVDNYTNLEAAPQEIRDVLS 280
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 26.4 bits (59), Expect = 2.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 19 ADLIKIFDTVGKLVTDKEVDDMLAEATG 46
A L+ + + V DK++ +L G
Sbjct: 494 ATLLSAMTGIARFVQDKDLKKILRATDG 521
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD,
cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries}
SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 26.0 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 62 SGGATDDDEVVVAAFRAFDEGGV 84
G D D+ V AA +AF G
Sbjct: 54 EGDKEDVDKAVKAARQAFQIGSP 76
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 26.0 bits (58), Expect = 2.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 62 SGGATDDDEVVVAAFRAFDEGGV 84
G D D+ V AA AF G
Sbjct: 53 EGDKEDVDKAVKAARAAFQLGSP 75
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 25.3 bits (55), Expect = 3.8
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEATGP 47
F+L D D +G + K ++++I + K++T ++V + + P
Sbjct: 113 FSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTP 155
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 25.2 bits (56), Expect = 4.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 63 GGATDDDEVVVAAFRAFDEG 82
G D + ++AA RAF+ G
Sbjct: 67 GTKEDAERAILAARRAFESG 86
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 24.1 bits (53), Expect = 5.1
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 5 FALMDADKDGILGKADLIKIF------DTVGKLVTDKEVDDMLAEA----TGPINFTQLL 54
F +DA+ DG + +L + K + ++ A G I+ + L
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL 72
Query: 55 SLFANRMS 62
+ A +
Sbjct: 73 NANAELLC 80
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase,
FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB:
2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A*
3rhr_A* 3rhl_A*
Length = 517
Score = 24.8 bits (55), Expect = 5.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 62 SGGATDDDEVVVAAFRAFDEG 82
+D D+ V AA AF+ G
Sbjct: 70 LAQVSDVDKAVAAAKEAFENG 90
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 24.3 bits (53), Expect = 6.7
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 5 FALMDADKDGILGKADLIKIFDTVGKLVTDKEVDDMLAEA 44
F D G L I + ++ + +
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLS 57
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 24.5 bits (53), Expect = 8.1
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 5 FALMDADKDGILGKADLIKI----FDTVGKLVTDKEVDDMLAE 43
F L D +KDG + K +++ I +D +GK +D +
Sbjct: 144 FNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQ 186
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 24.4 bits (54), Expect = 8.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 63 GGATDDDEVVVAAFRAFDE 81
G D D+ + AA +AF
Sbjct: 60 GSTRDADKAINAAKKAFQT 78
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 24.4 bits (54), Expect = 8.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 63 GGATDDDEVVVAAFRAFDE 81
G D D+ V AA + E
Sbjct: 42 GNKADVDKAVEAADDVYLE 60
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 23.5 bits (51), Expect = 9.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 5 FALMDADKDGILGKADLIKIF 25
F D D DG + ++ +IF
Sbjct: 16 FLKTDKDMDGFVSGLEVREIF 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.381
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,623,691
Number of extensions: 94771
Number of successful extensions: 550
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 204
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)