Query psy15323
Match_columns 139
No_of_seqs 157 out of 826
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:04:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hc9_A Trans-acting T-cell-spe 100.0 4.9E-41 1.7E-45 241.4 5.5 110 7-126 4-113 (115)
2 3dfx_A Trans-acting T-cell-spe 99.8 6.7E-22 2.3E-26 127.9 4.0 60 58-127 3-62 (63)
3 4gat_A Nitrogen regulatory pro 99.8 6.5E-21 2.2E-25 124.4 4.1 58 60-127 7-64 (66)
4 2vut_I AREA, nitrogen regulato 99.8 2E-19 7E-24 108.1 3.0 41 63-103 2-42 (43)
5 1gnf_A Transcription factor GA 99.8 1.6E-19 5.4E-24 110.1 2.4 44 7-50 3-46 (46)
6 1gnf_A Transcription factor GA 99.7 6.1E-19 2.1E-23 107.5 4.0 43 61-103 3-45 (46)
7 2vut_I AREA, nitrogen regulato 99.7 4.8E-19 1.6E-23 106.5 1.4 42 8-49 1-42 (43)
8 4gat_A Nitrogen regulatory pro 99.7 7.4E-19 2.5E-23 114.6 1.4 51 3-53 4-54 (66)
9 2kae_A GATA-type transcription 99.7 4.7E-18 1.6E-22 112.2 2.4 43 60-103 6-50 (71)
10 3dfx_A Trans-acting T-cell-spe 99.7 3.6E-18 1.2E-22 110.4 1.7 48 5-52 4-51 (63)
11 2kae_A GATA-type transcription 99.6 1.7E-16 5.9E-21 104.7 0.8 46 6-52 6-53 (71)
12 4hc9_A Trans-acting T-cell-spe 99.5 7E-15 2.4E-19 105.2 4.4 43 61-103 4-46 (115)
13 1dl6_A Transcription factor II 85.4 0.77 2.6E-05 28.1 3.1 31 7-39 10-40 (58)
14 3h0g_I DNA-directed RNA polyme 84.8 1.4 4.8E-05 30.3 4.6 87 8-94 4-111 (113)
15 1pft_A TFIIB, PFTFIIBN; N-term 81.0 0.45 1.5E-05 27.9 0.7 37 62-100 5-41 (50)
16 1dl6_A Transcription factor II 80.6 0.51 1.7E-05 29.0 0.9 37 63-101 12-48 (58)
17 1pft_A TFIIB, PFTFIIBN; N-term 79.7 1.5 5.3E-05 25.5 2.8 30 8-39 5-34 (50)
18 2iqj_A Stromal membrane-associ 79.1 0.65 2.2E-05 33.3 1.2 39 6-45 25-63 (134)
19 3dwd_A ADP-ribosylation factor 76.8 1.2 4E-05 32.6 2.0 40 5-45 35-74 (147)
20 3k7a_M Transcription initiatio 76.7 1.8 6.1E-05 35.0 3.3 33 7-39 20-52 (345)
21 1k81_A EIF-2-beta, probable tr 75.9 0.49 1.7E-05 26.4 -0.2 28 64-91 2-29 (36)
22 2fiy_A Protein FDHE homolog; F 74.9 1.2 4.1E-05 36.0 1.8 70 7-95 181-265 (309)
23 2owa_A Arfgap-like finger doma 74.8 0.9 3.1E-05 32.7 0.9 39 6-45 34-72 (138)
24 1twf_I B12.6, DNA-directed RNA 74.2 3.3 0.00011 28.8 3.7 90 7-96 3-113 (122)
25 1wfk_A Zinc finger, FYVE domai 73.8 3 0.0001 27.4 3.2 27 6-37 7-33 (88)
26 2crw_A ARF GAP 3, ADP-ribosyla 72.8 1.5 5.1E-05 32.0 1.7 39 6-45 27-65 (149)
27 2p57_A GTPase-activating prote 72.8 0.8 2.7E-05 33.3 0.2 39 6-45 35-73 (144)
28 2olm_A Nucleoporin-like protei 70.3 1.5 5E-05 31.6 1.1 37 6-43 23-59 (140)
29 3qt1_I DNA-directed RNA polyme 70.0 3 0.0001 29.7 2.7 90 5-94 21-131 (133)
30 2b0o_E UPLC1; arfgap, structur 69.5 2.1 7.1E-05 33.2 2.0 33 6-39 40-72 (301)
31 2crr_A Stromal membrane-associ 69.0 1.5 5E-05 31.6 0.9 39 6-45 27-65 (141)
32 3k1f_M Transcription initiatio 66.0 3.4 0.00012 31.3 2.4 31 8-38 21-51 (197)
33 2d74_B Translation initiation 64.4 3.9 0.00013 29.7 2.4 29 10-38 106-134 (148)
34 3cw2_K Translation initiation 64.2 3.2 0.00011 29.8 1.9 30 62-91 103-132 (139)
35 3k7a_M Transcription initiatio 63.4 2.9 9.9E-05 33.8 1.7 11 81-91 40-50 (345)
36 2d74_B Translation initiation 61.9 3.1 0.00011 30.2 1.5 33 63-102 105-137 (148)
37 1y02_A CARP2, FYVE-ring finger 61.8 4 0.00014 28.6 2.0 48 8-92 19-66 (120)
38 4bbr_M Transcription initiatio 61.5 3.2 0.00011 33.7 1.7 31 8-38 21-51 (345)
39 1z2q_A LM5-1; membrane protein 60.5 4.5 0.00016 26.1 2.0 31 63-93 46-77 (84)
40 3mpx_A FYVE, rhogef and PH dom 58.0 2.1 7.2E-05 34.9 0.0 29 63-91 400-428 (434)
41 1nee_A EIF-2-beta, probable tr 57.8 3.3 0.00011 29.7 1.0 28 63-90 103-130 (138)
42 2jr6_A UPF0434 protein NMA0874 56.0 9.3 0.00032 24.0 2.8 42 1-45 1-43 (68)
43 4bbr_M Transcription initiatio 55.2 3 0.0001 33.8 0.5 17 21-37 13-29 (345)
44 2js4_A UPF0434 protein BB2007; 54.8 8.9 0.0003 24.2 2.6 42 1-45 1-43 (70)
45 2zet_C Melanophilin; complex, 54.1 4.1 0.00014 29.6 1.0 50 7-91 67-116 (153)
46 3sub_A ADP-ribosylation factor 54.1 3.5 0.00012 30.5 0.6 38 7-45 21-58 (163)
47 3t7l_A Zinc finger FYVE domain 53.8 5.1 0.00018 26.2 1.4 35 62-97 44-78 (90)
48 3k1f_M Transcription initiatio 53.4 3.7 0.00013 31.1 0.7 29 64-92 23-51 (197)
49 1vfy_A Phosphatidylinositol-3- 52.8 5.5 0.00019 25.0 1.3 9 84-92 58-66 (73)
50 3o47_A ADP-ribosylation factor 52.4 4.5 0.00015 32.0 1.1 39 6-45 35-73 (329)
51 2yrc_A Protein transport prote 51.9 10 0.00035 23.1 2.5 37 3-39 4-43 (59)
52 3jue_A Arfgap with coiled-coil 51.2 6.6 0.00022 31.7 1.9 38 6-44 43-80 (368)
53 2zjr_Z 50S ribosomal protein L 50.7 8.1 0.00028 23.8 1.8 28 4-39 26-53 (60)
54 3j20_Y 30S ribosomal protein S 50.7 8.5 0.00029 22.7 1.9 27 8-37 19-45 (50)
55 3lju_X ARF-GAP with dual PH do 49.7 5.6 0.00019 32.6 1.2 31 6-37 32-62 (386)
56 1qyp_A RNA polymerase II; tran 48.6 2.8 9.5E-05 25.1 -0.6 31 63-93 16-53 (57)
57 1zbd_B Rabphilin-3A; G protein 48.6 9.1 0.00031 27.1 2.1 53 7-91 54-106 (134)
58 1dvp_A HRS, hepatocyte growth 48.2 7.2 0.00025 29.3 1.6 29 63-91 186-215 (220)
59 1tfi_A Transcriptional elongat 47.3 11 0.00037 22.2 2.0 34 7-40 8-48 (50)
60 3zyq_A Hepatocyte growth facto 46.3 5.9 0.0002 30.1 0.8 29 63-91 189-218 (226)
61 2jny_A Uncharacterized BCR; st 46.2 13 0.00044 23.3 2.3 37 6-45 8-45 (67)
62 2pk7_A Uncharacterized protein 45.6 10 0.00036 23.9 1.8 36 7-45 7-43 (69)
63 1joc_A EEA1, early endosomal a 44.7 8.8 0.0003 26.6 1.5 17 8-24 69-85 (125)
64 2d8y_A Eplin protein; LIM doma 44.3 48 0.0016 20.8 5.0 11 80-90 60-70 (91)
65 2hf1_A Tetraacyldisaccharide-1 44.2 8.6 0.00029 24.2 1.2 36 7-45 7-43 (68)
66 2owa_A Arfgap-like finger doma 43.7 15 0.00051 26.2 2.6 39 60-99 34-72 (138)
67 2iqj_A Stromal membrane-associ 43.7 15 0.00051 26.0 2.6 38 60-98 25-62 (134)
68 1twf_L ABC10-alpha, DNA-direct 42.9 5.7 0.0002 25.2 0.2 27 61-91 27-53 (70)
69 3v2d_5 50S ribosomal protein L 42.1 11 0.00039 23.1 1.5 27 5-39 27-53 (60)
70 1wig_A KIAA1808 protein; LIM d 41.9 8.9 0.00031 23.5 1.0 21 81-101 51-71 (73)
71 2g2k_A EIF-5, eukaryotic trans 40.2 5.9 0.0002 29.4 -0.0 29 63-91 97-127 (170)
72 1dcq_A PYK2-associated protein 39.8 12 0.00042 28.4 1.7 37 6-43 15-51 (278)
73 1nui_A DNA primase/helicase; z 38.9 17 0.00057 27.6 2.4 29 8-38 14-42 (255)
74 2e9h_A EIF-5, eukaryotic trans 35.9 8.3 0.00029 28.2 0.2 30 62-91 103-134 (157)
75 2crr_A Stromal membrane-associ 35.7 22 0.00074 25.3 2.4 37 60-97 27-63 (141)
76 2g2k_A EIF-5, eukaryotic trans 35.5 12 0.0004 27.8 1.0 30 10-39 98-129 (170)
77 2e9h_A EIF-5, eukaryotic trans 35.2 15 0.00053 26.8 1.6 31 10-40 105-137 (157)
78 3p8c_D Wiskott-aldrich syndrom 33.6 6.8 0.00023 31.3 -0.6 11 129-139 187-197 (279)
79 2crw_A ARF GAP 3, ADP-ribosyla 33.5 26 0.0009 25.3 2.5 39 60-99 27-65 (149)
80 2p57_A GTPase-activating prote 32.7 22 0.00075 25.6 2.0 38 60-98 35-72 (144)
81 2olm_A Nucleoporin-like protei 31.2 24 0.00081 25.1 2.0 37 60-97 23-59 (140)
82 3dwd_A ADP-ribosylation factor 30.7 32 0.0011 24.8 2.6 38 60-98 36-73 (147)
83 1ovx_A ATP-dependent CLP prote 29.6 22 0.00076 22.4 1.4 28 63-91 19-48 (67)
84 3lvq_E ARF-GAP with SH3 domain 28.9 24 0.00082 29.0 1.9 34 6-40 21-54 (497)
85 3sub_A ADP-ribosylation factor 28.5 36 0.0012 25.0 2.6 39 60-99 20-58 (163)
86 1x4u_A Zinc finger, FYVE domai 27.7 40 0.0014 21.3 2.5 31 7-37 13-46 (84)
87 2l1q_A Liver-expressed antimic 26.0 15 0.00052 20.9 0.1 6 19-24 2-7 (40)
88 3h0g_L DNA-directed RNA polyme 25.9 46 0.0016 20.6 2.4 25 9-37 22-46 (63)
89 2kdx_A HYPA, hydrogenase/ureas 25.3 30 0.001 23.4 1.6 11 28-38 72-82 (119)
90 2e72_A POGO transposable eleme 25.2 34 0.0012 20.2 1.6 21 18-40 3-23 (49)
91 2c6a_A Ubiquitin-protein ligas 24.8 22 0.00076 20.8 0.7 26 5-37 10-35 (46)
92 2ds5_A CLPX, ATP-dependent CLP 24.6 32 0.0011 20.3 1.4 30 7-37 10-41 (51)
93 2yw8_A RUN and FYVE domain-con 24.3 44 0.0015 21.1 2.2 8 84-91 64-71 (82)
94 2csz_A Synaptotagmin-like prot 24.0 39 0.0014 21.7 1.8 20 7-26 24-43 (76)
95 2b0o_E UPLC1; arfgap, structur 23.9 49 0.0017 25.2 2.8 38 59-97 39-76 (301)
96 3p8b_A DNA-directed RNA polyme 23.6 34 0.0011 22.4 1.5 11 9-19 24-34 (81)
97 2apo_B Ribosome biogenesis pro 23.2 42 0.0015 20.6 1.8 9 31-39 8-16 (60)
98 2lri_C Autoimmune regulator; Z 23.0 89 0.003 19.0 3.3 52 7-74 11-62 (66)
99 2co8_A NEDD9 interacting prote 23.0 1.4E+02 0.0047 18.2 4.6 11 80-90 62-72 (82)
100 1ryq_A DNA-directed RNA polyme 22.7 36 0.0012 21.5 1.5 16 8-23 23-39 (69)
101 3lpe_B DNA-directed RNA polyme 22.7 24 0.00082 21.6 0.6 14 10-23 15-28 (59)
102 3m7n_A Putative uncharacterize 21.8 49 0.0017 24.0 2.2 26 9-39 141-166 (179)
103 3cng_A Nudix hydrolase; struct 21.8 25 0.00087 24.9 0.7 31 7-37 2-33 (189)
104 2yt5_A Metal-response element- 21.5 1.1E+02 0.0036 18.1 3.5 42 3-48 1-42 (66)
No 1
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=100.00 E-value=4.9e-41 Score=241.41 Aligned_cols=110 Identities=78% Similarity=1.471 Sum_probs=100.7
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCccchhhccccCcccccCCCCCCcceecCCCCCccc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLTATRRLGLCCTNCGTRMTTLWRRNNDGEPVC 86 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kpsKR~~atk~~~~~C~~C~t~~t~~Wr~~~~g~~lC 86 (139)
.+++|+||++++||+||++++|++||||||||+++|++++|+.+++++..+.......|+||+|++||+||++++|++||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 47899999999999999999999999999999999999999999888887777888999999999999999999999999
Q ss_pred chhhhhHHhhCCCCCchhhhcccCcccccccccccccCCC
Q psy15323 87 NACGLYYKLHNVNRPLAMRHLAMRPLAMRKDGIQTRKRKP 126 (139)
Q Consensus 87 naCgly~~~~~~~Rp~~~~~~~~~~~~~~~~~i~~~~r~~ 126 (139)
|||||||++|++.||+ +|+++.|++|+|+-
T Consensus 84 NaCgl~~~~~~~~rp~----------~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 84 NACGLYYKLHNINRPL----------TMKKEGIQTRNRKM 113 (115)
T ss_dssp HHHHHHHHHHSSCCCG----------GGCCSSCCCCC---
T ss_pred hHHHHHHHHhCCCCCc----------cccccchhhccccc
Confidence 9999999999999999 68899999998863
No 2
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.84 E-value=6.7e-22 Score=127.88 Aligned_cols=60 Identities=70% Similarity=1.314 Sum_probs=51.9
Q ss_pred ccccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCCchhhhcccCcccccccccccccCCCC
Q psy15323 58 TRRLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLAMRHLAMRPLAMRKDGIQTRKRKPK 127 (139)
Q Consensus 58 tk~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp~~~~~~~~~~~~~~~~~i~~~~r~~~ 127 (139)
+......|++|+|++||+||++++|.+|||||||||++|++.||+ .++++.|++|+|+..
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~----------~~~~~~i~~R~Rk~~ 62 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPL----------TMKKEGIQTRNRKMS 62 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCG----------GGCCSSCCCCC----
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCc----------CcCCCccccccCCCC
Confidence 345677899999999999999999999999999999999999998 688999999999864
No 3
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.82 E-value=6.5e-21 Score=124.35 Aligned_cols=58 Identities=52% Similarity=1.000 Sum_probs=52.7
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCCchhhhcccCcccccccccccccCCCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLAMRHLAMRPLAMRKDGIQTRKRKPK 127 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp~~~~~~~~~~~~~~~~~i~~~~r~~~ 127 (139)
.....|++|+|++||+||++++|.+|||||||||++|++.||+ +++++.|++|+|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~----------~~k~~~ik~R~R~~~ 64 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL----------SLKTDVIKKRNRNSA 64 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCG----------GGCCSCCCCCCCSCC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCch----------hhccccccccccCCC
Confidence 4567899999999999999999999999999999999999999 577899998888754
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.76 E-value=2e-19 Score=108.14 Aligned_cols=41 Identities=63% Similarity=1.269 Sum_probs=39.3
Q ss_pred cccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCCch
Q psy15323 63 LCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLA 103 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp~~ 103 (139)
..|++|+|++||+||++++|.+|||||||||++|++.||++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCC
Confidence 47999999999999999999999999999999999999985
No 5
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.76 E-value=1.6e-19 Score=110.06 Aligned_cols=44 Identities=84% Similarity=1.639 Sum_probs=41.6
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCC
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK 50 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~k 50 (139)
+.++|+||++++||+||++++|.+||||||||+++|+++||+.+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCCC
Confidence 57899999999999999999999999999999999999999863
No 6
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.75 E-value=6.1e-19 Score=107.46 Aligned_cols=43 Identities=51% Similarity=1.044 Sum_probs=40.4
Q ss_pred cCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCCch
Q psy15323 61 LGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLA 103 (139)
Q Consensus 61 ~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp~~ 103 (139)
....|++|++++||+||++++|.+|||||||||++|+++||++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCC
Confidence 3568999999999999999999999999999999999999984
No 7
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.73 E-value=4.8e-19 Score=106.52 Aligned_cols=42 Identities=52% Similarity=1.096 Sum_probs=39.5
Q ss_pred CCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCC
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 49 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~ 49 (139)
+++|+||++++||+||++++|.+||||||||+++|++.||+.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCC
T ss_pred CCcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCC
Confidence 368999999999999999999999999999999999999975
No 8
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.72 E-value=7.4e-19 Score=114.60 Aligned_cols=51 Identities=43% Similarity=0.856 Sum_probs=46.3
Q ss_pred CCCCCCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCcc
Q psy15323 3 FQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSK 53 (139)
Q Consensus 3 ~~~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kpsK 53 (139)
.+.+.+.+|+||++++||+||++++|.+||||||||+++|+.+||+.+...
T Consensus 4 ~~~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~ 54 (66)
T 4gat_A 4 GEQNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTD 54 (66)
T ss_dssp SCSSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCS
T ss_pred CCCCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccc
Confidence 356679999999999999999999999999999999999999999976543
No 9
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.69 E-value=4.7e-18 Score=112.18 Aligned_cols=43 Identities=35% Similarity=0.787 Sum_probs=38.0
Q ss_pred ccCcccccCCCCCCcceec--CCCCCcccchhhhhHHhhCCCCCch
Q psy15323 60 RLGLCCTNCGTRMTTLWRR--NNDGEPVCNACGLYYKLHNVNRPLA 103 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~--~~~g~~lCnaCgly~~~~~~~Rp~~ 103 (139)
.....|+||+|++||+||+ +++| +|||||||||++|++.||++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~ 50 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVT 50 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcc
Confidence 3457899999999999999 5667 99999999999999999995
No 10
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.69 E-value=3.6e-18 Score=110.38 Aligned_cols=48 Identities=46% Similarity=0.989 Sum_probs=43.7
Q ss_pred CCCCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCc
Q psy15323 5 FGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPS 52 (139)
Q Consensus 5 ~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kps 52 (139)
.....+|+||++++||+||++++|.+||||||||+++++..||+.+..
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~ 51 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK 51 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCC
Confidence 345789999999999999999999999999999999999999997654
No 11
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.58 E-value=1.7e-16 Score=104.67 Aligned_cols=46 Identities=30% Similarity=0.677 Sum_probs=40.0
Q ss_pred CCCCccccCCCCCCCceee--cCCCCcccccccccccccCCCCCCCCCc
Q psy15323 6 GEGRECVNCGAISTPLWRR--DGTGHYLCNACGLYHKMNGMNRPLVKPS 52 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr--~~~g~~lCnaCgly~k~hg~nRP~~kps 52 (139)
....+|+||++++||+||+ ++.| +||||||||+++|+..||+....
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccch
Confidence 4588999999999999999 5566 99999999999999999997654
No 12
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.52 E-value=7e-15 Score=105.16 Aligned_cols=43 Identities=53% Similarity=1.130 Sum_probs=39.4
Q ss_pred cCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCCch
Q psy15323 61 LGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLA 103 (139)
Q Consensus 61 ~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp~~ 103 (139)
....|+||+|++||+||++++|.+|||||||||++|+.+||+.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~ 46 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLI 46 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCS
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccc
Confidence 4678999999999999999999999999999999999999973
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.42 E-value=0.77 Score=28.14 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
....|-+|+.+. +-.....|+++|..||+-.
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSCCEECTTTCCEE
T ss_pred ccccCcCCCCCc--eeEeCCCCeEEeCCCCCEE
Confidence 455899998644 5554556899999999954
No 14
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.77 E-value=1.4 Score=30.34 Aligned_cols=87 Identities=17% Similarity=0.367 Sum_probs=46.3
Q ss_pred CCccccCCCCCCCceeecCC-CCcccccccccccccCC--CCCCCCCc-cc---h-------hhccccCcccccCCCCCC
Q psy15323 8 GRECVNCGAISTPLWRRDGT-GHYLCNACGLYHKMNGM--NRPLVKPS-KR---L-------TATRRLGLCCTNCGTRMT 73 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~-g~~lCnaCgly~k~hg~--nRP~~kps-KR---~-------~atk~~~~~C~~C~t~~t 73 (139)
-..|.+|+..=.|.=-.+.. ..+.|..|+..+..... .+-....+ +. . .........|..|+-.+.
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a 83 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEA 83 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSCE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCCceE
Confidence 46899999654443111111 26899999984432210 00000000 00 0 011133468999999876
Q ss_pred ccee----cCCCC---CcccchhhhhHH
Q psy15323 74 TLWR----RNNDG---EPVCNACGLYYK 94 (139)
Q Consensus 74 ~~Wr----~~~~g---~~lCnaCgly~~ 94 (139)
--|. ..+++ ++.|-.|+..|+
T Consensus 84 ~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 84 VFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp EEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred EEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 5553 34444 367999997765
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.04 E-value=0.45 Score=27.92 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=23.8
Q ss_pred CcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCC
Q psy15323 62 GLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNR 100 (139)
Q Consensus 62 ~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~R 100 (139)
...|.+|+.. +|-.....|+.+|..||+-|.-+.+..
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~e~~id~ 41 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIEENIIDM 41 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBCCCCCCCC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCCccccccccc
Confidence 3469999773 343333457789999998665544443
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=80.63 E-value=0.51 Score=28.95 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=24.7
Q ss_pred cccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCC
Q psy15323 63 LCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRP 101 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp 101 (139)
..|.+|+... +-.....|+++|..||+-+.-+-+..-
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~e~~iD~g 48 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGDMICPECGLVVGDRVIDVG 48 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCCEECTTTCCEECCSCCCCC
T ss_pred ccCcCCCCCc--eeEeCCCCeEEeCCCCCEEeccccccC
Confidence 3699998754 333345678999999986655444433
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.66 E-value=1.5 Score=25.49 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=22.0
Q ss_pred CCccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
...|-+|+.+ ++-.....|+++|..||+-+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCCcc
Confidence 4579999863 55444456889999999954
No 18
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=79.06 E-value=0.65 Score=33.26 Aligned_cols=39 Identities=23% Similarity=0.659 Sum_probs=30.6
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
+..+.|++|++. -|.|=.-.-|.|||-.|.--.+.-|.+
T Consensus 25 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 25 EDNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred cCCCcCCcCcCC-CCCeEEecCCEEEhHhhhHHHhcCCCC
Confidence 456799999986 499998888999999997755544544
No 19
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=76.81 E-value=1.2 Score=32.58 Aligned_cols=40 Identities=30% Similarity=0.700 Sum_probs=30.9
Q ss_pred CCCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 5 FGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 5 ~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
.+..+.|++|++.. |.|=.-.-|.|||-.|.-..+.-|.+
T Consensus 35 ~p~N~~CaDCga~~-P~WaS~nlGvfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 35 QDENNVCFECGAFN-PQWVSVTYGIWICLECSGRHRGLGVH 74 (147)
T ss_dssp STTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred CcCCCccCCCCCCC-CCeEEecccEeEhHhhChHHhcCCCC
Confidence 34567999999864 99998888999999998755444443
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=76.71 E-value=1.8 Score=34.99 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
....|.+|+.+.+.+=.....|+++|..||+.-
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 356899999874334334457899999999954
No 21
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=75.90 E-value=0.49 Score=26.40 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=20.8
Q ss_pred ccccCCCCCCcceecCCCCCcccchhhh
Q psy15323 64 CCTNCGTRMTTLWRRNNDGEPVCNACGL 91 (139)
Q Consensus 64 ~C~~C~t~~t~~Wr~~~~g~~lCnaCgl 91 (139)
.|..|+-.+|.+-..+..-..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 6899999999987754222356999984
No 22
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=74.89 E-value=1.2 Score=36.00 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=45.5
Q ss_pred CCCccccCCCCCCCceee--c-CCC--CcccccccccccccCCCCCCCCCccchhhccccCcccccCCCCCCc-ceecCC
Q psy15323 7 EGRECVNCGAISTPLWRR--D-GTG--HYLCNACGLYHKMNGMNRPLVKPSKRLTATRRLGLCCTNCGTRMTT-LWRRNN 80 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr--~-~~g--~~lCnaCgly~k~hg~nRP~~kpsKR~~atk~~~~~C~~C~t~~t~-~Wr~~~ 80 (139)
....|-.||+..+--+=+ + .+| ...|.-|+-.|... ...|++|+.+..- .|.-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-------------------R~~C~~Cg~~~~l~y~~~e~ 241 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-------------------RIKCSHCEESKHLAYLSLEH 241 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-------------------TTSCSSSCCCSCCEEECCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-------------------CcCCcCCCCCCCeeEEEecC
Confidence 357899999876654433 3 356 36899999976432 2359999997644 443322
Q ss_pred -------CCC--cccchhhhhHHh
Q psy15323 81 -------DGE--PVCNACGLYYKL 95 (139)
Q Consensus 81 -------~g~--~lCnaCgly~~~ 95 (139)
++. .+|..|+.|.+.
T Consensus 242 ~~~~~~~~~~r~e~C~~C~~YlK~ 265 (309)
T 2fiy_A 242 DGQPAEKAVLRAETCPSCQGYLKQ 265 (309)
T ss_dssp -CCCSTTCSEEEEEETTTTEEEEE
T ss_pred ccccCCCcceEEEEcccccchHhh
Confidence 222 689999998864
No 23
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=74.76 E-value=0.9 Score=32.72 Aligned_cols=39 Identities=26% Similarity=0.680 Sum_probs=30.6
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
+..+.|++|++.. |.|=.-.-|.|||-.|.--.+.-|.+
T Consensus 34 p~N~~CaDCga~~-P~WaS~n~GvfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 34 PENRTCFDCESRN-PTWLSLSFAVFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred cCCCcCCCCcCCC-CCeEEecCCEEEhHhhhHHHhCCCCC
Confidence 3467999999864 99998888999999998755544544
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=74.21 E-value=3.3 Score=28.80 Aligned_cols=90 Identities=17% Similarity=0.365 Sum_probs=49.8
Q ss_pred CCCccccCCCCCCCceeecC-CCCcccccccccccccCC--CC--CC-CCCccc-h-------hhccccCcccccCCCCC
Q psy15323 7 EGRECVNCGAISTPLWRRDG-TGHYLCNACGLYHKMNGM--NR--PL-VKPSKR-L-------TATRRLGLCCTNCGTRM 72 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~-~g~~lCnaCgly~k~hg~--nR--P~-~kpsKR-~-------~atk~~~~~C~~C~t~~ 72 (139)
....|..|+..=.|.=.+.. ...+.|..|+..+..... .+ .. ....+. . .........|..|+-.+
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~ 82 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRE 82 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCC
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCCCCE
Confidence 35689999975554322222 236899999985543210 00 00 000000 0 01112356899999988
Q ss_pred Cccee----cCCCC---CcccchhhhhHHhh
Q psy15323 73 TTLWR----RNNDG---EPVCNACGLYYKLH 96 (139)
Q Consensus 73 t~~Wr----~~~~g---~~lCnaCgly~~~~ 96 (139)
.-.|. .++++ ++.|-.|+..|+-.
T Consensus 83 a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 83 NVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp EEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred EEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 66554 34444 37899999877554
No 25
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.77 E-value=3 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=18.4
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccc
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGL 37 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl 37 (139)
.+...|..|+..-|.+.|+- .|-.||.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrH-----HCR~CG~ 33 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEY-----GCKNCGR 33 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEE-----ECSSSCC
T ss_pred CcCCCCcCcCCcccCccccc-----cCCCCCC
Confidence 35678999999888776652 4555544
No 26
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.83 E-value=1.5 Score=32.01 Aligned_cols=39 Identities=31% Similarity=0.733 Sum_probs=30.5
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
+..+.|++|++. -|.|=.-.-|.|||-.|.-..+.-|.+
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTT
T ss_pred cCCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCCC
Confidence 456899999975 689998888999999997755544544
No 27
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=72.83 E-value=0.8 Score=33.33 Aligned_cols=39 Identities=31% Similarity=0.756 Sum_probs=30.2
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
+..+.|.+|++. -|.|=.-.-|.|||-.|.-..+.-|.+
T Consensus 35 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 35 PTNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred CCCCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCCC
Confidence 456799999986 599998778999999998755444544
No 28
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=70.32 E-value=1.5 Score=31.61 Aligned_cols=37 Identities=19% Similarity=0.524 Sum_probs=28.7
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNG 43 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg 43 (139)
+..+.|++|++. -|.|=.-.-|.|||-.|.--.+.-|
T Consensus 23 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~LG 59 (140)
T 2olm_A 23 PHNRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLRGLN 59 (140)
T ss_dssp GGGGSCTTTCSS-CCCEEETTTTEEECHHHHHHHTTSS
T ss_pred cCCCcCCCCCCC-CCCceeeccCEEEchhccchhccCC
Confidence 346799999985 6999988889999999976443334
No 29
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=69.96 E-value=3 Score=29.68 Aligned_cols=90 Identities=17% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCCCCccccCCCCCCCceeec-CCCCcccccccccccccCC--CCCCCCCcc--c---h------hhccccCcccccCCC
Q psy15323 5 FGEGRECVNCGAISTPLWRRD-GTGHYLCNACGLYHKMNGM--NRPLVKPSK--R---L------TATRRLGLCCTNCGT 70 (139)
Q Consensus 5 ~~~~~~C~nC~~~~tp~WRr~-~~g~~lCnaCgly~k~hg~--nRP~~kpsK--R---~------~atk~~~~~C~~C~t 70 (139)
+..-+.|..|+.-=.|.=-++ ....+.|..|+........ .+-..+.+. . . .........|..|+-
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkCg~ 100 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHS 100 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSCSEEEECCC--------------------------------
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCCCCCC
Confidence 445689999997766642211 1226899999975432211 000000000 0 0 011123568999998
Q ss_pred CCCccee----cCCCC---CcccchhhhhHH
Q psy15323 71 RMTTLWR----RNNDG---EPVCNACGLYYK 94 (139)
Q Consensus 71 ~~t~~Wr----~~~~g---~~lCnaCgly~~ 94 (139)
.+.-.|. .++++ +++|-.|+..|+
T Consensus 101 ~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 101 RENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp -------------------------------
T ss_pred ceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 8765543 23333 478999998775
No 30
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=69.48 E-value=2.1 Score=33.23 Aligned_cols=33 Identities=30% Similarity=0.756 Sum_probs=27.2
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
+....|..|++.. |.|-.-.-|.++|-.|.-..
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~h 72 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVH 72 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHH
Confidence 4567999999964 99998888999999996533
No 31
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.98 E-value=1.5 Score=31.64 Aligned_cols=39 Identities=26% Similarity=0.682 Sum_probs=30.0
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
+..+.|++|++. -|.|=.-.-|.|||-.|.--.+.-|.+
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 27 EDNKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GGGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHCTT
T ss_pred ccCCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCCCC
Confidence 346799999986 589998778999999997755444543
No 32
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=66.01 E-value=3.4 Score=31.31 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=20.9
Q ss_pred CCccccCCCCCCCceeecCCCCccccccccc
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLY 38 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly 38 (139)
...|-.|+...+.+=-....|+++|..||+-
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 4478888875544443345678888888885
No 33
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=64.39 E-value=3.9 Score=29.74 Aligned_cols=29 Identities=34% Similarity=0.679 Sum_probs=22.7
Q ss_pred ccccCCCCCCCceeecCCCCccccccccc
Q psy15323 10 ECVNCGAISTPLWRRDGTGHYLCNACGLY 38 (139)
Q Consensus 10 ~C~nC~~~~tp~WRr~~~g~~lCnaCgly 38 (139)
.|..|+..+|-+=..+..--.-|+|||..
T Consensus 106 lC~~C~sPdT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 106 ICPVCGSPDTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp SCSSSCCTTCCCCBSSSSBCCCCSSSCCC
T ss_pred ECCCCCCcCcEEEEeCCEEEEEecCCCCC
Confidence 69999999999887543335689999984
No 34
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=64.16 E-value=3.2 Score=29.81 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred CcccccCCCCCCcceecCCCCCcccchhhh
Q psy15323 62 GLCCTNCGTRMTTLWRRNNDGEPVCNACGL 91 (139)
Q Consensus 62 ~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgl 91 (139)
-..|..|+..+|.+-..+..-..-|+|||-
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred eeECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 367999999999997754333467999984
No 35
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=63.37 E-value=2.9 Score=33.76 Aligned_cols=11 Identities=55% Similarity=1.383 Sum_probs=5.3
Q ss_pred CCCcccchhhh
Q psy15323 81 DGEPVCNACGL 91 (139)
Q Consensus 81 ~g~~lCnaCgl 91 (139)
.|+++|..||+
T Consensus 40 ~G~~vC~~CG~ 50 (345)
T 3k7a_M 40 EGDVVCALCGL 50 (345)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCEecCCCCe
Confidence 34455555544
No 36
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=61.86 E-value=3.1 Score=30.25 Aligned_cols=33 Identities=30% Similarity=0.703 Sum_probs=25.2
Q ss_pred cccccCCCCCCcceecCCCCCcccchhhhhHHhhCCCCCc
Q psy15323 63 LCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPL 102 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~Rp~ 102 (139)
..|..|+..+|.+-..+..-..-|+||| ..||+
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACG-------a~~~V 137 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACG-------AETPI 137 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSC-------CCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCC-------CCccc
Confidence 6799999999999775433346799997 56666
No 37
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.76 E-value=4 Score=28.56 Aligned_cols=48 Identities=23% Similarity=0.560 Sum_probs=27.5
Q ss_pred CCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCccchhhccccCcccccCCCCCCcceecCCCCCcccc
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLTATRRLGLCCTNCGTRMTTLWRRNNDGEPVCN 87 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kpsKR~~atk~~~~~C~~C~t~~t~~Wr~~~~g~~lCn 87 (139)
...|..|++.-|.+.|+ -.|-+||. ..|..|-....++ .-+|+
T Consensus 19 ~~~C~~C~~~Fs~~~Rk-----HHCR~CG~-------------------------ifC~~Cs~~~~~~-------vRVC~ 61 (120)
T 1y02_A 19 EPSCKSCGAHFANTARK-----QTCLDCKK-------------------------NFCMTCSSQVGNG-------PRLCL 61 (120)
T ss_dssp -CCCTTTCCCCSSGGGC-----EECTTTCC-------------------------EECGGGEEC-----------CCEEH
T ss_pred cCcccCcCCcccccccc-----ccCCCCCC-------------------------eeCHHHhCCCCCC-------ceECH
Confidence 55777887777665554 35555555 2466665554432 56899
Q ss_pred hhhhh
Q psy15323 88 ACGLY 92 (139)
Q Consensus 88 aCgly 92 (139)
.|+..
T Consensus 62 ~C~~~ 66 (120)
T 1y02_A 62 LCQRF 66 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99754
No 38
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=61.49 E-value=3.2 Score=33.67 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=21.9
Q ss_pred CCccccCCCCCCCceeecCCCCccccccccc
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLY 38 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly 38 (139)
...|-+|+...+-+--....|+++|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 3469999875555545456788899999985
No 39
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.48 E-value=4.5 Score=26.09 Aligned_cols=31 Identities=29% Similarity=0.579 Sum_probs=14.8
Q ss_pred cccccCCCCCCcceecCCCC-CcccchhhhhH
Q psy15323 63 LCCTNCGTRMTTLWRRNNDG-EPVCNACGLYY 93 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g-~~lCnaCgly~ 93 (139)
.+|..|-....++=..+... .-+|+.|+...
T Consensus 46 v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 46 VLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp EECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred EEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 34555555444432111111 25788887543
No 40
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.00 E-value=2.1 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=0.0
Q ss_pred cccccCCCCCCcceecCCCCCcccchhhh
Q psy15323 63 LCCTNCGTRMTTLWRRNNDGEPVCNACGL 91 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g~~lCnaCgl 91 (139)
..|..|-....++-..+..-.-+|+.|+-
T Consensus 400 ~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 400 IVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp -----------------------------
T ss_pred EeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 46777776666653222112357888864
No 41
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=57.80 E-value=3.3 Score=29.71 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=22.4
Q ss_pred cccccCCCCCCcceecCCCCCcccchhh
Q psy15323 63 LCCTNCGTRMTTLWRRNNDGEPVCNACG 90 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g~~lCnaCg 90 (139)
..|..|+..+|.+-+.+..-..-|+|||
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACG 130 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACG 130 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTS
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCC
Confidence 5799999999999875433346799998
No 42
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=56.02 E-value=9.3 Score=24.01 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCCCCCCCCccccCCCCCCCceeecCCCCcccccccc-cccccCCC
Q psy15323 1 MDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGL-YHKMNGMN 45 (139)
Q Consensus 1 ~~~~~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl-y~k~hg~n 45 (139)
|+...-+--.|-.|. +++--....+.++|.+|++ |....|+.
T Consensus 1 md~~LL~iL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (68)
T 2jr6_A 1 MEKKFLDILVCPVTK---GRLEYHQDKQELWSRQAKLAYPIKDGIP 43 (68)
T ss_dssp CCCSSSCCCBCSSSC---CBCEEETTTTEEEETTTTEEEEEETTEE
T ss_pred CChHHhhheECCCCC---CcCeEeCCCCEEEcCCCCcEecCCCCee
Confidence 444455566788787 5665555567899999999 55555653
No 43
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=55.23 E-value=3 Score=33.81 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=5.5
Q ss_pred ceeecCCCCcccccccc
Q psy15323 21 LWRRDGTGHYLCNACGL 37 (139)
Q Consensus 21 ~WRr~~~g~~lCnaCgl 37 (139)
.|+-+-+-...|..|+-
T Consensus 13 ~~~~~l~~~~~Cp~C~~ 29 (345)
T 4bbr_M 13 RRGPNLNIVLTCPECKV 29 (345)
T ss_dssp ---------CCCSSCCC
T ss_pred ccCcccccCCcCCCCCC
Confidence 55544444556777775
No 44
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=54.83 E-value=8.9 Score=24.25 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred CCCCCCCCCccccCCCCCCCceeecCCCCcccccccc-cccccCCC
Q psy15323 1 MDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGL-YHKMNGMN 45 (139)
Q Consensus 1 ~~~~~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl-y~k~hg~n 45 (139)
|+...-+--.|-.|. +++--....|..+|.+|++ |....|+.
T Consensus 1 md~~LL~iL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (70)
T 2js4_A 1 MESRLLDILVCPVCK---GRLEFQRAQAELVCNADRLAFPVRDGVP 43 (70)
T ss_dssp CCCCCCCCCBCTTTC---CBEEEETTTTEEEETTTTEEEEEETTEE
T ss_pred CChHHhhheECCCCC---CcCEEeCCCCEEEcCCCCceecCCCCee
Confidence 344445566777777 4665555567899999999 55555643
No 45
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.10 E-value=4.1 Score=29.63 Aligned_cols=50 Identities=22% Similarity=0.602 Sum_probs=32.8
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCccchhhccccCcccccCCCCCCcceecCCCCCccc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLTATRRLGLCCTNCGTRMTTLWRRNNDGEPVC 86 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kpsKR~~atk~~~~~C~~C~t~~t~~Wr~~~~g~~lC 86 (139)
....|..|+.+-+-+.-+ ..+|..|..+ +|..|+... + .+...+|
T Consensus 67 ~~~~C~~C~~~fg~l~~~----g~~C~~C~~~-------------------------VC~~C~~~~-----~-~~~~W~C 111 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS----RRQCLECSLF-------------------------VCKSCSHAH-----P-EEQGWLC 111 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC----CEECTTTCCE-------------------------ECGGGEECC-----S-SSSSCEE
T ss_pred CCccchhhcCccccccCC----CCcCCCCCch-------------------------hhccccccc-----C-CCCcEee
Confidence 467888888776655433 2477777763 688888522 2 2345899
Q ss_pred chhhh
Q psy15323 87 NACGL 91 (139)
Q Consensus 87 naCgl 91 (139)
+.|..
T Consensus 112 ~vC~k 116 (153)
T 2zet_C 112 DPCHL 116 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99953
No 46
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=54.06 E-value=3.5 Score=30.52 Aligned_cols=38 Identities=29% Similarity=0.760 Sum_probs=29.7
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
.-+.|++|++. -|.|=.-.-|.|||-.|.-..+.-|.+
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCTT
T ss_pred CCCccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCCC
Confidence 45799999985 699998888999999997654444544
No 47
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=53.79 E-value=5.1 Score=26.24 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=20.0
Q ss_pred CcccccCCCCCCcceecCCCCCcccchhhhhHHhhC
Q psy15323 62 GLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHN 97 (139)
Q Consensus 62 ~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~ 97 (139)
..+|..|-....++-..+ .-.-+|+.|+.......
T Consensus 44 ~v~C~~Cs~~~~~l~~~~-~~~RVC~~C~~~l~~~~ 78 (90)
T 3t7l_A 44 KVFCGVCCNRKCKLQYLE-KEARVCVVCYETISKAQ 78 (90)
T ss_dssp CEECGGGSCEEEEETTTT-EEEEECHHHHHHHHHHC
T ss_pred CEECCcccCCeeecCCCC-CCCeECHHHHHHHHHHh
Confidence 346777777665552111 11268999986554433
No 48
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=53.37 E-value=3.7 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.760 Sum_probs=14.4
Q ss_pred ccccCCCCCCcceecCCCCCcccchhhhh
Q psy15323 64 CCTNCGTRMTTLWRRNNDGEPVCNACGLY 92 (139)
Q Consensus 64 ~C~~C~t~~t~~Wr~~~~g~~lCnaCgly 92 (139)
.|..|+...+.+=.....|+++|..||+-
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 56666653322211223455666666653
No 49
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.78 E-value=5.5 Score=24.99 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=6.1
Q ss_pred cccchhhhh
Q psy15323 84 PVCNACGLY 92 (139)
Q Consensus 84 ~lCnaCgly 92 (139)
-+|+.|+..
T Consensus 58 RVC~~C~~~ 66 (73)
T 1vfy_A 58 RVCDSCFED 66 (73)
T ss_dssp EECHHHHHH
T ss_pred EECHHHHHH
Confidence 578888643
No 50
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=52.43 E-value=4.5 Score=32.00 Aligned_cols=39 Identities=31% Similarity=0.737 Sum_probs=29.5
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~n 45 (139)
+..+.|++|++. -|.|=.-.-|-+||-.|.--.+.-|.+
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred CCCCcCCCCCCC-CCCeEEecCCEEEChhhhhhhcccCCC
Confidence 456799999985 579998778999999997654443433
No 51
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=51.90 E-value=10 Score=23.13 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=30.3
Q ss_pred CCCCCCCcccc--CCCCCCCceeecCCC-Ccccccccccc
Q psy15323 3 FQFGEGRECVN--CGAISTPLWRRDGTG-HYLCNACGLYH 39 (139)
Q Consensus 3 ~~~~~~~~C~n--C~~~~tp~WRr~~~g-~~lCnaCgly~ 39 (139)
+....+..|.. |.+-.-|.++-+..+ ...||-|+...
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 43 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC
Confidence 44556789998 999999999987766 68999998753
No 52
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=51.22 E-value=6.6 Score=31.70 Aligned_cols=38 Identities=26% Similarity=0.623 Sum_probs=29.2
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM 44 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~ 44 (139)
+.-+.|.+|++. -|.|=.-.-|.|||-.|.--.+.-|.
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~lg~ 80 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLGVTLCIQCSGIHRSLGV 80 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred CCcCcCCCCCCC-CCCeEEecCCeEEcHhHHHHHhccCC
Confidence 456799999985 69999888899999999754433343
No 53
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=50.72 E-value=8.1 Score=23.76 Aligned_cols=28 Identities=29% Similarity=0.702 Sum_probs=18.5
Q ss_pred CCCCCCccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 4 QFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 4 ~~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
+.+..-.|.+||.. .. -+.+|..||.|.
T Consensus 26 ~~p~l~~c~~cG~~-----~~---pH~vc~~CG~Y~ 53 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK-----KL---SHHICPNCGYYD 53 (60)
T ss_dssp CCCCCEECTTTCCE-----EC---TTBCCTTTCBSS
T ss_pred cCCCceECCCCCCE-----eC---CceEcCCCCcCC
Confidence 34556678888843 21 246999999774
No 54
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.67 E-value=8.5 Score=22.72 Aligned_cols=27 Identities=26% Similarity=0.715 Sum_probs=16.7
Q ss_pred CCccccCCCCCCCceeecCCCCcccccccc
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGL 37 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl 37 (139)
-+.|..||+.- ++. ...+...|..||+
T Consensus 19 ~k~CP~CG~~~--fm~-~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGV--FMA-DHGDRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSC--EEE-ECSSEEECSSSCC
T ss_pred cccCCCCCCce--EEe-cCCCeEECCCCCC
Confidence 46788888521 222 2335678888887
No 55
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=49.68 E-value=5.6 Score=32.59 Aligned_cols=31 Identities=29% Similarity=0.762 Sum_probs=26.1
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccc
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGL 37 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl 37 (139)
+..+.|++|++. -|.|=.-.-|.+||-.|.-
T Consensus 32 ~~N~~C~dC~~~-~p~w~s~~~g~~~C~~Csg 62 (386)
T 3lju_X 32 PGNARCADCGAP-DPDWASYTLGVFICLSCSG 62 (386)
T ss_dssp GGGSBCTTTCCB-SCCEEETTTTEEECHHHHH
T ss_pred cCCCcCccCCCC-CCCeEEecccEEEhhhhch
Confidence 345689999986 7899988889999999975
No 56
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=48.62 E-value=2.8 Score=25.11 Aligned_cols=31 Identities=23% Similarity=0.651 Sum_probs=16.8
Q ss_pred cccccCCCCCC----cceecCCCCC---cccchhhhhH
Q psy15323 63 LCCTNCGTRMT----TLWRRNNDGE---PVCNACGLYY 93 (139)
Q Consensus 63 ~~C~~C~t~~t----~~Wr~~~~g~---~lCnaCgly~ 93 (139)
..|..|+-.+. ..||..+++. ++|..|+..|
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 45777776442 2444444442 5677776544
No 57
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=48.60 E-value=9.1 Score=27.09 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=32.5
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCccchhhccccCcccccCCCCCCcceecCCCCCccc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLTATRRLGLCCTNCGTRMTTLWRRNNDGEPVC 86 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kpsKR~~atk~~~~~C~~C~t~~t~~Wr~~~~g~~lC 86 (139)
....|..|+.+.+-+.-.+ .+|..|..+ +|..|+...+.. ...-..+|
T Consensus 54 ~~~~C~~C~~~~g~l~~~g----~~C~~C~~~-------------------------VC~~C~~~~~~~---~~~~~W~C 101 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS----VVCEDCKKN-------------------------VCTKCGVETSNN---RPHPVWLC 101 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE----EECTTTCCE-------------------------EETTSEEECCCS---SSSCCEEE
T ss_pred CCccccccCCCcccccCCC----CCCCCCCcc-------------------------cccccCCccCCC---CCccceec
Confidence 3567888887776544432 467777663 688888754321 11123799
Q ss_pred chhhh
Q psy15323 87 NACGL 91 (139)
Q Consensus 87 naCgl 91 (139)
+.|..
T Consensus 102 ~vC~k 106 (134)
T 1zbd_B 102 KICLE 106 (134)
T ss_dssp HHHHH
T ss_pred hhhHH
Confidence 99953
No 58
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.22 E-value=7.2 Score=29.28 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=14.5
Q ss_pred cccccCCCCCCcceecCCCC-Ccccchhhh
Q psy15323 63 LCCTNCGTRMTTLWRRNNDG-EPVCNACGL 91 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g-~~lCnaCgl 91 (139)
.+|..|-....++=..+... .-+|+.|+.
T Consensus 186 v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~ 215 (220)
T 1dvp_A 186 VFCGQCTAKQCPLPKYGIEKEVRVCDGCFA 215 (220)
T ss_dssp EECSTTSCEEEEEGGGTEEEEEEECHHHHH
T ss_pred EEChHHhCCeeecCcCCCCCCCEeCHHHHH
Confidence 45666665554442222111 257888864
No 59
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=47.31 E-value=11 Score=22.21 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCCccccCCCCCCCceee----cCCC---Cccccccccccc
Q psy15323 7 EGRECVNCGAISTPLWRR----DGTG---HYLCNACGLYHK 40 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr----~~~g---~~lCnaCgly~k 40 (139)
....|.+|+-.+.-.|.. ++++ -+.|..|+..++
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 345788888877766652 2223 258888887553
No 60
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.33 E-value=5.9 Score=30.14 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=15.3
Q ss_pred cccccCCCCCCcceecCCCC-Ccccchhhh
Q psy15323 63 LCCTNCGTRMTTLWRRNNDG-EPVCNACGL 91 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g-~~lCnaCgl 91 (139)
..|..|-....++=.-+... .-+|+.|+-
T Consensus 189 v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~ 218 (226)
T 3zyq_A 189 IFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 218 (226)
T ss_dssp EECTTTCCEEEEEGGGTEEEEEEECHHHHH
T ss_pred EeChhhcCCcccCCCCCCCCCCEeCHHHHH
Confidence 45677766555542222111 258888864
No 61
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=46.18 E-value=13 Score=23.34 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccc-cccccCCC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGL-YHKMNGMN 45 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl-y~k~hg~n 45 (139)
-+--.|-.|. +++--....|..+|.+|++ |....|+.
T Consensus 8 LeiL~CP~ck---~~L~~~~~~g~LvC~~c~~~YPI~dGIP 45 (67)
T 2jny_A 8 LEVLACPKDK---GPLRYLESEQLLVNERLNLAYRIDDGIP 45 (67)
T ss_dssp TCCCBCTTTC---CBCEEETTTTEEEETTTTEEEEEETTEE
T ss_pred HHHhCCCCCC---CcCeEeCCCCEEEcCCCCccccCCCCEe
Confidence 3455677776 5766655678899999999 55555653
No 62
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=45.56 E-value=10 Score=23.86 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=24.4
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccc-cccccCCC
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGL-YHKMNGMN 45 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl-y~k~hg~n 45 (139)
+--.|-.|. +++--....+..+|.+|++ |....|+.
T Consensus 7 eiL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (69)
T 2pk7_A 7 DILACPICK---GPLKLSADKTELISKGAGLAYPIRDGIP 43 (69)
T ss_dssp GTCCCTTTC---CCCEECTTSSEEEETTTTEEEEEETTEE
T ss_pred hheeCCCCC---CcCeEeCCCCEEEcCCCCcEecCcCCee
Confidence 445677777 5665545567899999999 55555643
No 63
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.72 E-value=8.8 Score=26.64 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=9.5
Q ss_pred CCccccCCCCCCCceee
Q psy15323 8 GRECVNCGAISTPLWRR 24 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr 24 (139)
...|..|+...|.+-|+
T Consensus 69 ~~~C~~C~~~Fs~~~Rr 85 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRR 85 (125)
T ss_dssp CCBCTTTCCBCCSSSCC
T ss_pred CCCCcCcCCcccccccc
Confidence 44566666665544443
No 64
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.28 E-value=48 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=7.9
Q ss_pred CCCCcccchhh
Q psy15323 80 NDGEPVCNACG 90 (139)
Q Consensus 80 ~~g~~lCnaCg 90 (139)
.+|.++|..|+
T Consensus 60 ~~g~~yC~~~y 70 (91)
T 2d8y_A 60 LHGRIYCKPHF 70 (91)
T ss_dssp SSSCCCCHHHH
T ss_pred ECCEEECHHHH
Confidence 35667888885
No 65
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=44.16 E-value=8.6 Score=24.19 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccc-cccccCCC
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGL-YHKMNGMN 45 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl-y~k~hg~n 45 (139)
+--.|-.|. +++--....+.++|.+|++ |....|+.
T Consensus 7 ~iL~CP~ck---~~L~~~~~~~~LiC~~cg~~YPI~dGIP 43 (68)
T 2hf1_A 7 EILVCPLCK---GPLVFDKSKDELICKGDRLAFPIKDGIP 43 (68)
T ss_dssp EECBCTTTC---CBCEEETTTTEEEETTTTEEEEEETTEE
T ss_pred hheECCCCC---CcCeEeCCCCEEEcCCCCcEecCCCCee
Confidence 344677776 5665555567899999999 55555653
No 66
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=43.73 E-value=15 Score=26.19 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=31.6
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVN 99 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~ 99 (139)
.....|..|+.. .|.|=.-+-|..||-.|.--.|..+++
T Consensus 34 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 34 PENRTCFDCESR-NPTWLSLSFAVFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred cCCCcCCCCcCC-CCCeEEecCCEEEhHhhhHHHhCCCCC
Confidence 457899999985 599988888989999998777666643
No 67
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=43.70 E-value=15 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=31.0
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNV 98 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~ 98 (139)
.....|..|+.. .|.|=.-+-|..||-.|.--.|..++
T Consensus 25 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 25 EDNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCcCCcCcCC-CCCeEEecCCEEEhHhhhHHHhcCCC
Confidence 457789999985 58998888898999999877776664
No 68
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=42.95 E-value=5.7 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.699 Sum_probs=14.9
Q ss_pred cCcccccCCCCCCcceecCCCCCcccchhhh
Q psy15323 61 LGLCCTNCGTRMTTLWRRNNDGEPVCNACGL 91 (139)
Q Consensus 61 ~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgl 91 (139)
..-+|.+|+...... ..+...|-.||.
T Consensus 27 v~Y~C~~CG~~~e~~----~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS----RTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC----TTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeC----CCCCccCCCCCc
Confidence 344677777754443 223356777763
No 69
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=42.13 E-value=11 Score=23.09 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=17.5
Q ss_pred CCCCCccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 5 FGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 5 ~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
.+..-.|.+||. +.. -+.+|..||.|.
T Consensus 27 ~p~l~~c~~cGe-----~~~---~H~vc~~CG~Y~ 53 (60)
T 3v2d_5 27 PPTLVPCPECKA-----MKP---PHTVCPECGYYA 53 (60)
T ss_dssp CCCCEECTTTCC-----EEC---TTSCCTTTCEET
T ss_pred CCceeECCCCCC-----eec---ceEEcCCCCcCC
Confidence 445667888884 222 146899999764
No 70
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.86 E-value=8.9 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=14.4
Q ss_pred CCCcccchhhhhHHhhCCCCC
Q psy15323 81 DGEPVCNACGLYYKLHNVNRP 101 (139)
Q Consensus 81 ~g~~lCnaCgly~~~~~~~Rp 101 (139)
++.++|..|+.........||
T Consensus 51 ~~~~yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 51 GSSIWHPACRQAARTEDSGPS 71 (73)
T ss_dssp TTEEECTTHHHHTSSSSCCSC
T ss_pred CCEEEChHHChHhhcccccCC
Confidence 566899999865555555555
No 71
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=40.16 E-value=5.9 Score=29.43 Aligned_cols=29 Identities=28% Similarity=0.628 Sum_probs=22.4
Q ss_pred cccccCCCCCCcceecCCCC--Ccccchhhh
Q psy15323 63 LCCTNCGTRMTTLWRRNNDG--EPVCNACGL 91 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr~~~~g--~~lCnaCgl 91 (139)
..|..|+..+|.|-....++ ..-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 67999999999998743333 357999983
No 72
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=39.82 E-value=12 Score=28.36 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=28.4
Q ss_pred CCCCccccCCCCCCCceeecCCCCcccccccccccccC
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNG 43 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg 43 (139)
+....|..||+.. |.|-.-.-|.++|-.|.-..+.-|
T Consensus 15 ~~n~~c~dc~~~~-p~w~s~~~g~~~c~~c~~~hr~lg 51 (278)
T 1dcq_A 15 TGNDVCCDCGAPD-PTWLSTNLGILTCIECSGIHRELG 51 (278)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHC
T ss_pred CCCCcCCCCCCCC-CCeEEecCCeEEcHHHHHHHhhcC
Confidence 4567999999985 699988889999999955333333
No 73
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=38.93 E-value=17 Score=27.57 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=21.5
Q ss_pred CCccccCCCCCCCceeecCCCCccccccccc
Q psy15323 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLY 38 (139)
Q Consensus 8 ~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly 38 (139)
...|-.||.+.. +| -..+|.+.|+.||.+
T Consensus 14 ~~~CP~Cg~~d~-~~-~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDG-NS-LFSDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSC-EE-EETTSCEEETTTCCE
T ss_pred CCcCCCCCCCCC-ce-EeCCCCeecccCCCc
Confidence 457999998753 44 335677999999975
No 74
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.86 E-value=8.3 Score=28.24 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=22.4
Q ss_pred CcccccCCCCCCcceecCCCC--Ccccchhhh
Q psy15323 62 GLCCTNCGTRMTTLWRRNNDG--EPVCNACGL 91 (139)
Q Consensus 62 ~~~C~~C~t~~t~~Wr~~~~g--~~lCnaCgl 91 (139)
-..|..|+..+|.|-....++ ..-|+|||-
T Consensus 103 YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TTSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 367999999999997632333 357999983
No 75
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.74 E-value=22 Score=25.34 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=30.4
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHN 97 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~ 97 (139)
.....|..|+.. .|.|=.-+-|..||-.|.--.|..+
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG 63 (141)
T 2crr_A 27 EDNKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLG 63 (141)
T ss_dssp GGGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHC
T ss_pred ccCCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCC
Confidence 456789999985 6899888889899999987777666
No 76
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=35.53 E-value=12 Score=27.80 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=22.1
Q ss_pred ccccCCCCCCCceeecCCC--Ccccccccccc
Q psy15323 10 ECVNCGAISTPLWRRDGTG--HYLCNACGLYH 39 (139)
Q Consensus 10 ~C~nC~~~~tp~WRr~~~g--~~lCnaCgly~ 39 (139)
.|..|+..+|-+=....++ ...|+|||...
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 5899999999888732233 46899999854
No 77
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.18 E-value=15 Score=26.78 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=23.1
Q ss_pred ccccCCCCCCCceeecCCC--Cccccccccccc
Q psy15323 10 ECVNCGAISTPLWRRDGTG--HYLCNACGLYHK 40 (139)
Q Consensus 10 ~C~nC~~~~tp~WRr~~~g--~~lCnaCgly~k 40 (139)
.|..|+..+|-+=....+. ...|+|||...-
T Consensus 105 lC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 105 LCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp SCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 6999999999988732222 468999998643
No 78
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=33.56 E-value=6.8 Score=31.29 Aligned_cols=11 Identities=73% Similarity=1.458 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q psy15323 129 QGGGGGGGSGG 139 (139)
Q Consensus 129 ~~~~~~~~~~~ 139 (139)
-++||+||+||
T Consensus 187 ~~~~~~~~~~~ 197 (279)
T 3p8c_D 187 GGSGGSGGSGG 197 (279)
T ss_dssp -----------
T ss_pred CCCCCCCCCCC
Confidence 33444455554
No 79
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.46 E-value=26 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=31.8
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVN 99 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~ 99 (139)
.....|..|+. ..|.|=.-+-|..||-.|.-..|..+++
T Consensus 27 p~N~~CaDCga-~~P~WaS~n~GvfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 27 PTNKVCFDCGA-KNPSWASITYGVFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TTTSBCSSSCC-BSCCCEETTTTEECCHHHHHHHHHHCTT
T ss_pred cCCCcCCCCcC-CCCCcEEeccCEEEchhcchhhccCCCC
Confidence 46789999997 5689988888988999998777776653
No 80
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=32.66 E-value=22 Score=25.60 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=31.1
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNV 98 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~ 98 (139)
.....|.+|+.. .|.|=.-+-|..||-.|.-..|..++
T Consensus 35 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 35 PTNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCC
Confidence 467899999984 68998878888899999877776664
No 81
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=31.16 E-value=24 Score=25.12 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=29.3
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHN 97 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~ 97 (139)
.....|..|+. ..|.|=.-+-|-.||-.|.--.|..+
T Consensus 23 p~N~~CaDCg~-~~P~WaS~n~GvfiC~~CsgiHR~LG 59 (140)
T 2olm_A 23 PHNRKCFDCDQ-RGPTYVNMTVGSFVCTSCSGSLRGLN 59 (140)
T ss_dssp GGGGSCTTTCS-SCCCEEETTTTEEECHHHHHHHTTSS
T ss_pred cCCCcCCCCCC-CCCCceeeccCEEEchhccchhccCC
Confidence 35778999998 47999888889899999976555444
No 82
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=30.72 E-value=32 Score=24.82 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.2
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNV 98 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~ 98 (139)
.....|..|+.. .|.|=.-+-|-.||-.|.--.|..++
T Consensus 36 p~N~~CaDCga~-~P~WaS~nlGvfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 36 DENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCccCCCCCC-CCCeEEecccEeEhHhhChHHhcCCC
Confidence 457789999985 59998888898999999877776654
No 83
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=29.58 E-value=22 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.574 Sum_probs=20.1
Q ss_pred cccccCCCCCCccee--cCCCCCcccchhhh
Q psy15323 63 LCCTNCGTRMTTLWR--RNNDGEPVCNACGL 91 (139)
Q Consensus 63 ~~C~~C~t~~t~~Wr--~~~~g~~lCnaCgl 91 (139)
..|+-|+-.+..+-+ .|+ |.++|+.|.-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-gvyICdeCI~ 48 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-SVYICDECVD 48 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-SCEEEHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-CCChhHHHHH
Confidence 579999987755432 344 5689999974
No 84
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=28.87 E-value=24 Score=28.97 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=26.7
Q ss_pred CCCCccccCCCCCCCceeecCCCCccccccccccc
Q psy15323 6 GEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHK 40 (139)
Q Consensus 6 ~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k 40 (139)
+....|.+|++ .-|.|=.-.-|-++|-.|.=-.+
T Consensus 21 ~~n~~c~dc~~-~~p~w~s~~~~~~~c~~c~~~hr 54 (497)
T 3lvq_E 21 PGNSQCCDCGA-ADPTWLSTNLGVLTCIQCSGVHR 54 (497)
T ss_dssp TTTTBCTTTCC-BSCCEEETTTTEEECHHHHHHHH
T ss_pred CCCCcccCCCC-CCCCEEEechhHHhHHhhHHHHH
Confidence 45679999996 56899887779999999875433
No 85
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=28.52 E-value=36 Score=25.01 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=31.3
Q ss_pred ccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhCCC
Q psy15323 60 RLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVN 99 (139)
Q Consensus 60 ~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~~~ 99 (139)
.....|..|+.. .|.|=.-.-|-.||-.|.--.|..+++
T Consensus 20 p~N~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 20 ESNNKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCTT
T ss_pred CCCCccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCCC
Confidence 356789999994 799988888989999998767666543
No 86
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.71 E-value=40 Score=21.35 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=16.9
Q ss_pred CCCccccCCCCCCCceeecC---CCCcccccccc
Q psy15323 7 EGRECVNCGAISTPLWRRDG---TGHYLCNACGL 37 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~---~g~~lCnaCgl 37 (139)
+...|..|+..-|-+-|+-. =|..+|..|-.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 35577777776665555422 14445555543
No 87
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=25.99 E-value=15 Score=20.86 Aligned_cols=6 Identities=67% Similarity=1.664 Sum_probs=5.0
Q ss_pred CCceee
Q psy15323 19 TPLWRR 24 (139)
Q Consensus 19 tp~WRr 24 (139)
||+||-
T Consensus 2 TP~WR~ 7 (40)
T 2l1q_A 2 TPFWRG 7 (40)
T ss_dssp CCTTSS
T ss_pred cchhhh
Confidence 899994
No 88
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.91 E-value=46 Score=20.60 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=13.5
Q ss_pred CccccCCCCCCCceeecCCCCcccccccc
Q psy15323 9 RECVNCGAISTPLWRRDGTGHYLCNACGL 37 (139)
Q Consensus 9 ~~C~nC~~~~tp~WRr~~~g~~lCnaCgl 37 (139)
-.|..|+++.+.. .....-|..||.
T Consensus 22 Y~C~~Cg~~~~l~----~~~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQ----AKEVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCC----SSSCCCCSSSCC
T ss_pred EECCCCCCeeecC----CCCceECCCCCc
Confidence 4566666655422 223456666665
No 89
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.30 E-value=30 Score=23.37 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=6.0
Q ss_pred CCccccccccc
Q psy15323 28 GHYLCNACGLY 38 (139)
Q Consensus 28 g~~lCnaCgly 38 (139)
..+.|..||..
T Consensus 72 ~~~~C~~CG~~ 82 (119)
T 2kdx_A 72 VELECKDCSHV 82 (119)
T ss_dssp CEEECSSSSCE
T ss_pred ceEEcCCCCCE
Confidence 34556666653
No 90
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.19 E-value=34 Score=20.25 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=15.0
Q ss_pred CCCceeecCCCCccccccccccc
Q psy15323 18 STPLWRRDGTGHYLCNACGLYHK 40 (139)
Q Consensus 18 ~tp~WRr~~~g~~lCnaCgly~k 40 (139)
..+.|..+ +.+.|..|+..++
T Consensus 3 ~~~~~~~~--~~~~CPrCn~~f~ 23 (49)
T 2e72_A 3 SGSSGQDG--GRKICPRCNAQFR 23 (49)
T ss_dssp SSSSSCCS--SCCCCTTTCCCCS
T ss_pred CCcccccC--CceeCCccccccc
Confidence 34566654 6789999998664
No 91
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=24.80 E-value=22 Score=20.81 Aligned_cols=26 Identities=27% Similarity=0.694 Sum_probs=19.4
Q ss_pred CCCCCccccCCCCCCCceeecCCCCcccccccc
Q psy15323 5 FGEGRECVNCGAISTPLWRRDGTGHYLCNACGL 37 (139)
Q Consensus 5 ~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgl 37 (139)
.....+|..|....+|+-| .|+-|--
T Consensus 10 ~~D~WkC~~C~~~N~Pl~r-------~C~rCw~ 35 (46)
T 2c6a_A 10 LADYWKCTSCNEMNPPLPS-------HCNRCWA 35 (46)
T ss_dssp GGGCEECTTTCCEECSSCS-------SCTTTCC
T ss_pred ccceEecccccccCCCccc-------hhhHHHh
Confidence 3456789999999998877 5766654
No 92
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=24.62 E-value=32 Score=20.32 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=19.9
Q ss_pred CCCccccCCCCCCCcee--ecCCCCcccccccc
Q psy15323 7 EGRECVNCGAISTPLWR--RDGTGHYLCNACGL 37 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WR--r~~~g~~lCnaCgl 37 (139)
....|+=||-.+...-+ .+ .|.++|+.|-.
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaG-pgv~IC~eCi~ 41 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAG-PSVYICDECVD 41 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEEC-SSCEEEHHHHH
T ss_pred CCcEecCCCCCHHHhcccCCC-CCCEehHHHHH
Confidence 34579999987765444 23 36788888854
No 93
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.28 E-value=44 Score=21.11 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=5.9
Q ss_pred cccchhhh
Q psy15323 84 PVCNACGL 91 (139)
Q Consensus 84 ~lCnaCgl 91 (139)
-+|+.|+.
T Consensus 64 RVC~~C~~ 71 (82)
T 2yw8_A 64 RVCDSCHT 71 (82)
T ss_dssp EECHHHHH
T ss_pred EECHHHHH
Confidence 57888864
No 94
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.96 E-value=39 Score=21.73 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=14.8
Q ss_pred CCCccccCCCCCCCceeecC
Q psy15323 7 EGRECVNCGAISTPLWRRDG 26 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~ 26 (139)
..+.|+.|+..-.-++-++.
T Consensus 24 ~~r~CarC~~~LG~l~~~g~ 43 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTN 43 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTS
T ss_pred CccchhhhCccccccccCCC
Confidence 46788888877777776654
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=23.95 E-value=49 Score=25.21 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=30.3
Q ss_pred cccCcccccCCCCCCcceecCCCCCcccchhhhhHHhhC
Q psy15323 59 RRLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHN 97 (139)
Q Consensus 59 k~~~~~C~~C~t~~t~~Wr~~~~g~~lCnaCgly~~~~~ 97 (139)
......|..|+.. .|.|-.-+-|..+|-.|.--.|.-+
T Consensus 39 ~~~n~~c~dc~~~-~p~w~s~~~g~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 39 RPGNSQCCDCGAA-DPTWLSTNLGVLTCIQCSGVHRELG 76 (301)
T ss_dssp STTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHC
T ss_pred CCCCCcCCCCCCC-CCCeEEeecCeEEcHHHHHHHHhhC
Confidence 3457899999995 5999998889899999976555544
No 96
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=23.56 E-value=34 Score=22.36 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=5.2
Q ss_pred CccccCCCCCC
Q psy15323 9 RECVNCGAIST 19 (139)
Q Consensus 9 ~~C~nC~~~~t 19 (139)
+.|.+|....|
T Consensus 24 rAC~~C~~v~~ 34 (81)
T 3p8b_A 24 KACRHCHYITS 34 (81)
T ss_dssp EEETTTCBEES
T ss_pred HHHhhCCCccC
Confidence 34555555433
No 97
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.22 E-value=42 Score=20.57 Aligned_cols=9 Identities=56% Similarity=1.394 Sum_probs=5.1
Q ss_pred ccccccccc
Q psy15323 31 LCNACGLYH 39 (139)
Q Consensus 31 lCnaCgly~ 39 (139)
.|.+|++|.
T Consensus 8 ~C~~CgvYT 16 (60)
T 2apo_B 8 KCPKCGLYT 16 (60)
T ss_dssp ECTTTCCEE
T ss_pred eCCCCCCEe
Confidence 466666553
No 98
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=22.96 E-value=89 Score=19.01 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=31.0
Q ss_pred CCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCCCCCccchhhccccCcccccCCCCCCc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLTATRRLGLCCTNCGTRMTT 74 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~~kpsKR~~atk~~~~~C~~C~t~~t~ 74 (139)
....|..|+- ...-++|..|...+.+.-...|+..... ..=.|..|....+|
T Consensus 11 ~~~~C~vC~~---------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~-------g~W~C~~C~~~~~p 62 (66)
T 2lri_C 11 PGARCGVCGD---------GTDVLRCTHCAAAFHWRCHFPAGTSRPG-------TGLRCRSCSGDVTP 62 (66)
T ss_dssp TTCCCTTTSC---------CTTCEECSSSCCEECHHHHCTTTCCCCS-------SSCCCTTTTTCCCC
T ss_pred CCCCcCCCCC---------CCeEEECCCCCCceecccCCCccCcCCC-------CCEECccccCCCcc
Confidence 4567999972 1225799999987776665555533211 12357777655443
No 99
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.95 E-value=1.4e+02 Score=18.23 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=8.3
Q ss_pred CCCCcccchhh
Q psy15323 80 NDGEPVCNACG 90 (139)
Q Consensus 80 ~~g~~lCnaCg 90 (139)
.+|.++|..|+
T Consensus 62 ~~g~~yC~~~y 72 (82)
T 2co8_A 62 GDGHFYCLQHL 72 (82)
T ss_dssp TTCCCEETTTC
T ss_pred cCCEEEChHHH
Confidence 46778898886
No 100
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=22.74 E-value=36 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=10.6
Q ss_pred CCccccCCCCC-CCcee
Q psy15323 8 GRECVNCGAIS-TPLWR 23 (139)
Q Consensus 8 ~~~C~nC~~~~-tp~WR 23 (139)
...|.||+.+. |+.|.
T Consensus 23 ~~~CPnC~s~~tS~~w~ 39 (69)
T 1ryq_A 23 EDRCPVCGSRDLSEEWF 39 (69)
T ss_dssp SSSCTTTCCCCEESCEE
T ss_pred CCcCCCccCCccCCccc
Confidence 45677887665 56666
No 101
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=22.70 E-value=24 Score=21.57 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=12.5
Q ss_pred ccccCCCCCCCcee
Q psy15323 10 ECVNCGAISTPLWR 23 (139)
Q Consensus 10 ~C~nC~~~~tp~WR 23 (139)
.|.||+...|+.|.
T Consensus 15 ~CpnC~~~tt~~~~ 28 (59)
T 3lpe_B 15 ICPICHSPTSENWI 28 (59)
T ss_dssp BCTTTCCBEESCEE
T ss_pred CCCCCCCCccCCEe
Confidence 79999987799998
No 102
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=21.83 E-value=49 Score=23.99 Aligned_cols=26 Identities=31% Similarity=0.645 Sum_probs=18.7
Q ss_pred CccccCCCCCCCceeecCCCCcccccccccc
Q psy15323 9 RECVNCGAISTPLWRRDGTGHYLCNACGLYH 39 (139)
Q Consensus 9 ~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~ 39 (139)
..|+.|| .++.+.+ .++.|..||...
T Consensus 141 a~~~~~g---~~m~~~~--~~~~cp~~g~~e 166 (179)
T 3m7n_A 141 ALCSNCK---TEMVREG--DILKCPECGRVE 166 (179)
T ss_dssp CBCTTTC---CBCEECS--SSEECSSSCCEE
T ss_pred ecccccC---CceEECC--CEEECCCCCCEE
Confidence 4577777 6666665 578888888854
No 103
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=21.78 E-value=25 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=19.2
Q ss_pred CCCccccCCCCCCCceeecCCC-Ccccccccc
Q psy15323 7 EGRECVNCGAISTPLWRRDGTG-HYLCNACGL 37 (139)
Q Consensus 7 ~~~~C~nC~~~~tp~WRr~~~g-~~lCnaCgl 37 (139)
..+.|.+||+.-+...-.+... ..+|-.|+.
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCC
Confidence 4678999996554333222222 468999985
No 104
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=21.53 E-value=1.1e+02 Score=18.10 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCCCCCccccCCCCCCCceeecCCCCcccccccccccccCCCCCC
Q psy15323 3 FQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 48 (139)
Q Consensus 3 ~~~~~~~~C~nC~~~~tp~WRr~~~g~~lCnaCgly~k~hg~nRP~ 48 (139)
+++++...|..|+..... +.+.-++|..|...+.+.-...|+
T Consensus 1 g~~~~~~~C~vC~~~~~~----~~~~ll~Cd~C~~~~H~~C~~p~l 42 (66)
T 2yt5_A 1 GSSGSSGVCTICQEEYSE----APNEMVICDKCGQGYHQLCHTPHI 42 (66)
T ss_dssp CCCCCCCCBSSSCCCCCB----TTBCEEECSSSCCEEETTTSSSCC
T ss_pred CCCCCCCCCCCCCCCCCC----CCCCEEECCCCChHHHhhhCCCcc
Confidence 356677899999964321 112247999999877666544443
Done!