RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15323
(139 letters)
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 75.0 bits (184), Expect = 1e-19
Identities = 43/72 (59%), Positives = 48/72 (66%), Gaps = 10/72 (13%)
Query: 59 RRLGLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLAMRHLAMRPLAMRKDG 118
+R G C+NC T TTLWRR+ G+PVCNACGLYYKLH VN RPL MRKDG
Sbjct: 1 KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVN----------RPLTMRKDG 50
Query: 119 IQTRKRKPKKQG 130
IQTR RK +G
Sbjct: 51 IQTRNRKVSSKG 62
Score = 60.4 bits (146), Expect = 5e-14
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 8 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLTATRR 60
G C NC +T LWRR G +CNACGLY+K++ +NRPL + R
Sbjct: 4 GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNR 56
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor
GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 65.5 bits (160), Expect = 3e-16
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 7 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 45
E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG N
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39
Score = 60.5 bits (147), Expect = 2e-14
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 62 GLCCTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVN 99
C NCG T LWRR+ G +CNACGLY+K++ N
Sbjct: 2 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1
{Emericella nidulans [TaxId: 162425]}
Length = 42
Score = 65.2 bits (159), Expect = 4e-16
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 65 CTNCGTRMTTLWRRNNDGEPVCNACGLYYKLHNVNRPLAM 104
CTNC T+ T LWRRN +G+P+CNACGL+ KLH V RPL++
Sbjct: 3 CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 42
Score = 60.2 bits (146), Expect = 4e-14
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 11 CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 48
C NC +TPLWRR+ G LCNACGL+ K++G+ RPL
Sbjct: 3 CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 40
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 28.3 bits (63), Expect = 0.061
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 52 SKRLTATRRLGLCCTNCGTRMTTLWRRNNDGEPVCNACGL 91
+ RL A R+ C N L G+ +C CGL
Sbjct: 3 TSRLDALPRV--TCPNHPD--AILVEDYRAGDMICPECGL 38
Score = 26.7 bits (59), Expect = 0.26
Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 10 ECVNCGAISTPLWRRDGTGHYLCNACGL 37
C N L G +C CGL
Sbjct: 13 TCPNHP--DAILVEDYRAGDMICPECGL 38
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
N-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 50
Score = 25.9 bits (57), Expect = 0.47
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 64 CCTNCGTRMTTLWRRNNDGEPVCNACGL 91
C C + L GE VC CG
Sbjct: 7 VCPACES--AELIYDPERGEIVCAKCGY 32
Score = 24.7 bits (54), Expect = 1.1
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 9 RECVNCGAISTPLWRRDGTGHYLCNACGL 37
+ C C S L G +C CG
Sbjct: 6 KVCPACE--SAELIYDPERGEIVCAKCGY 32
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation
initiation factor 2 beta {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 37
Score = 23.5 bits (51), Expect = 2.9
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 10 ECVNCGAISTPLWRRDGTGHYLCNACG 36
C C T + R C ACG
Sbjct: 3 ICHECNRPDTRIIREGRISLLKCEACG 29
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 59
Score = 23.4 bits (51), Expect = 3.7
Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 3/31 (9%)
Query: 63 LCCTNCGTRMTTLWRRNNDGEPVCNACGLYY 93
L C L ++ V L Y
Sbjct: 11 LACPKDKGP---LRYLESEQLLVNERLNLAY 38
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation
initiation factor 2 beta {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 36
Score = 23.1 bits (50), Expect = 3.9
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 11 CVNCGAISTPLWRRDGTGHYLCNACG 36
C CG T + + C ACG
Sbjct: 3 CRECGKPDTKIIKEGRVHLLKCMACG 28
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and
RPA-binding domain, N-terminal subdomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 36
Score = 22.9 bits (49), Expect = 4.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 65 CTNCGTRMTTLWRRNNDGEPVCNAC 89
C CG + ++ P C+ C
Sbjct: 8 CEECGKEFMDSYLMDHFDLPTCDDC 32
>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.8 bits (49), Expect = 5.4
Identities = 8/41 (19%), Positives = 10/41 (24%), Gaps = 13/41 (31%)
Query: 65 CTNCGTRMTTLWRRNNDG-----------EPVCNACGLYYK 94
C C R + VC C Y+K
Sbjct: 3 CMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLC--YFK 41
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
{Chromobacterium violaceum [TaxId: 536]}
Length = 59
Score = 22.6 bits (49), Expect = 6.7
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 63 LCCTNCGTRMTTLWRRNNDGEPVCNACGLYY 93
L C C L + E +C L +
Sbjct: 8 LVCPLCKGP---LVFDKSKDELICKGDRLAF 35
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase
carboxyl transferase subunit beta, AccD {Escherichia
coli [TaxId: 562]}
Length = 263
Score = 24.0 bits (51), Expect = 7.6
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 11 CVNCGAISTPLWRRD-GTGHYLCNACGLYHKMNGMNR 46
C +CG + L+R + +C C + +M NR
Sbjct: 5 CDSCGQV---LYRAELERNLEVCPKCDHHMRMTARNR 38
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 22.7 bits (49), Expect = 8.0
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 8/29 (27%)
Query: 10 ECVNCGAISTPLWRRDGTGHYLCNACGLY 38
EC C H++C CG Y
Sbjct: 31 ECPQCHGKKLS--------HHICPNCGYY 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.475
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,905
Number of extensions: 25261
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 35
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)