BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15324
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
 pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
          Length = 300

 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 144 AFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN-TFGWARAEV 202
           +   L++I   + T S++++A     L D+ A +   L V+ S +    N +FG  +AE 
Sbjct: 21  SLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAES 80

Query: 203 LGALVNAVFLVALCFSITVEACKRFIEVETIHDP 236
           L AL  ++F+      + +   +  I    + DP
Sbjct: 81  LAALAQSMFISGSALFLFLTGIQHLISPTPMTDP 114



 Score = 31.2 bits (69), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 157 TNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALC 216
           T S A+ AD  H  SDV       L++ +S   W    +GW RA+ L AL   ++++   
Sbjct: 142 TQSQAVRADMLHYQSDVMMNGAILLALGLS---W----YGWHRADALFALGIGIYILYSA 194

Query: 217 FSITVEACKRFIE 229
             +  EA +  ++
Sbjct: 195 LRMGYEAVQSLLD 207


>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
          Length = 283

 Score = 36.6 bits (83), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 144 AFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN-TFGWARAEV 202
           +   L++I   + T S++++A     L D+ A +   L V+ S +    N +FG  +AE 
Sbjct: 14  SLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAES 73

Query: 203 LGALVNAVFLVALCFSITVEACKRFIEVETIHDP 236
           L AL  ++F+      + +   +  I    + DP
Sbjct: 74  LAALAQSMFISGSALFLFLTGIQHLISPTPMTDP 107



 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 157 TNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALC 216
           T S A+ AD  H  SDV       L++ +S   W    +GW RA+ L AL   ++++   
Sbjct: 135 TQSQAVRADMLHYQSDVMMNGAILLALGLS---W----YGWHRADALFALGIGIYILYSA 187

Query: 217 FSITVEACKRFIE 229
             +  EA +  ++
Sbjct: 188 LRMGYEAVQSLLD 200


>pdb|2X0S|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
           Phosphate Dikinase From Trypanosoma Brucei
          Length = 913

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 203 LGALVNAVFLVALCFSITVEACKRFIEVETI 233
           L  +VN    V   F+IT EACK + E ETI
Sbjct: 32  LAEMVNLGIPVPPGFTITTEACKTYQETETI 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,310,958
Number of Sequences: 62578
Number of extensions: 262513
Number of successful extensions: 776
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 6
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)