RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15324
(363 letters)
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 131 bits (332), Expect = 8e-36
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 135 RLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN- 193
RL+ L F L+EI+ G +T S+AL+AD+ HMLSD AL++A +++K++ + +K
Sbjct: 23 RLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRF 82
Query: 194 TFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLLVNVVD 253
TFG+ R E+L A +NA+ L+ + I EA +R + IH ++ VV +GL+VN+V
Sbjct: 83 TFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHYSGML-VVAIIGLVVNLVS 141
Query: 254 AI 255
A+
Sbjct: 142 AL 143
Score = 88.9 bits (221), Expect = 4e-20
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 52 HSHDTSQMNMRGVFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVMLILRS 111
H +NMRG +LH+L DALGSV VII+A VI T W + +DP LS+++ +LIL S
Sbjct: 146 HKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSW---LDPILSIVIALLILSS 202
Query: 112 VWPLLQESALILLQTVPTHI 131
WPLL+ES ILL+ VP I
Sbjct: 203 AWPLLKESLNILLEGVPEGI 222
Score = 56.9 bits (138), Expect = 3e-09
Identities = 66/325 (20%), Positives = 112/325 (34%), Gaps = 87/325 (26%)
Query: 48 HGHGHSHDTSQMNMR----------------------GVF----------LHILADALGS 75
H H HD + N R G+ LH+L+DAL +
Sbjct: 5 AHHSHGHDHAHDNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDAL-A 63
Query: 76 VIVIISATVIA----TTEWEYRYHIDPALSLLM-----VMLILRSVWPLLQESALILLQT 126
+++ + A +A T + + Y L +L ++LI+ S+ +L E+ LL
Sbjct: 64 LLLALIAIKLARRPATKRFTFGYK---RLEILAAFLNALLLIVVSLL-ILWEAIQRLLA- 118
Query: 127 VPTHIQKCRLISMFWLTAFFFLVEIVVGYV-----TNSMALVADSFHMLSDVAALVVAFL 181
P I M + +V +V + ++ + H+L D V +
Sbjct: 119 -PPPIH---YSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVII 174
Query: 182 SVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVV 241
+ + + GW+ + + ++V A+ I A E I
Sbjct: 175 AA-IVIRFT-----GWSWLDPILSIVIALL-------ILSSAWPLLKESLNI-------- 213
Query: 242 VGALGLLVNVVDAI----QRRLLENVDGVLAVHEFHVWQLAGDRIIASAHI-RCRNLSEY 296
LL V + I R L + GV +VH+ HVW + G + H+
Sbjct: 214 -----LLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLHVVVDEVADAD 268
Query: 297 MKLAEKVKEFFHNEGIHSTTIQPEF 321
L + V+ GI TIQ E
Sbjct: 269 AALDQIVRRLLEKYGIEHVTIQLET 293
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 110 bits (277), Expect = 4e-28
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 145 FFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN-TFGWARAEVL 203
L++IV G ++ S+AL+AD+ H LSDVAA +A L++++S + + FG RAE+L
Sbjct: 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEIL 60
Query: 204 GALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLLVNVVDAI 255
AL+N +FLV + I EA +R I E D +++V +GL+VN++ A+
Sbjct: 61 AALLNGLFLVVVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILAL 112
Score = 64.2 bits (157), Expect = 1e-11
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 54 HDTSQMNMRGVFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVMLILRSVW 113
H + +R LH+L+DAL SV V+I A +I W + DP +LL+ +LIL + +
Sbjct: 119 HRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG-WHW---ADPIAALLISLLILYTAF 174
Query: 114 PLLQESALILLQTVPTHIQ 132
LL+ES +LL P
Sbjct: 175 RLLKESINVLLDAAPDEED 193
Score = 56.1 bits (136), Expect = 5e-09
Identities = 47/275 (17%), Positives = 105/275 (38%), Gaps = 51/275 (18%)
Query: 66 LHILADALGSVIVIIS---ATVIATTEWEYRYHIDPAL-SLLMVMLILRSVWPLLQESAL 121
+H L+D S I +++ + A + + L +LL + ++ +L E+
Sbjct: 23 IHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIE 82
Query: 122 -ILLQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYV-------TNSMALVADSFHMLSDV 173
++ +M + +V +++ S+AL A + H+LSD
Sbjct: 83 RLINPEPEID-----GGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDA 137
Query: 174 AALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETI 233
+ V + + FGW A+ + AL+ ++ ++ F + E+ ++
Sbjct: 138 LSSVGVLIGALLI-------YFGWHWADPIAALLISLLILYTAFRLLKESINVLLD-AAP 189
Query: 234 HDPWLIVVVGALGLLVNVVDAIQRRLLENVDGVLAVHEFHVWQLAGDRIIASAHI---RC 290
+ L + ++ + ++ GV VH+ H+W++ ++ H+
Sbjct: 190 DEEDLEEI---------------KKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPD 234
Query: 291 RNLSEYMKLAEKV-----KEFFHNEGIHSTTIQPE 320
+L + +A ++ K GI TIQ E
Sbjct: 235 LDLKQAHDIALEIEREILKRHP---GIEHVTIQVE 266
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 101 bits (255), Expect = 5e-25
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 145 FFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN-TFGWARAEVL 203
LV++ G +T S+AL+AD+ H L D+ + ++A L++++S + K FG R E L
Sbjct: 1 LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPL 60
Query: 204 GALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLLVNVVDAI 255
AL+ ++ L+ + I E+ +R I E I I++V + L+VN++ A+
Sbjct: 61 AALIVSLLLLGVGVFILYESIERLISPEEIEPGG-ILLVALISLVVNLLLAL 111
Score = 65.8 bits (161), Expect = 3e-12
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 48 HGHGHSHDTSQMNMRGVFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVML 107
G +R LH L D LGS+ V+I +I T DP SLL+ +L
Sbjct: 114 RRAGRKIGKKSSALRADALHALVDVLGSLAVLIGLLLILLTGLPI---ADPLASLLIALL 170
Query: 108 ILRSVWPLLQESALILLQTVPTHIQKCRLISMFWLT 143
IL + LL+ES LL P +
Sbjct: 171 ILYTGLRLLKESLSELLGASPDPELVDEIRDALEKL 206
Score = 58.5 bits (142), Expect = 8e-10
Identities = 54/281 (19%), Positives = 107/281 (38%), Gaps = 54/281 (19%)
Query: 65 FLHILADALGSVIVIISATVIA-TTEWEYRY---HIDP----ALSLLMVMLILRSVWPLL 116
LH L D L S++ +++ + + + + + ++P +SLL++ + + ++
Sbjct: 22 ALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEPLAALIVSLLLLGVGVFILY--- 78
Query: 117 QESALILLQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYV---------TNSMALVADSF 167
ES L+ + + +V +++ S AL AD+
Sbjct: 79 -ESIERLISPEEIEP-----GGILLVALISLVVNLLLALYLRRAGRKIGKKSSALRADAL 132
Query: 168 HMLSDVAALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRF 227
H L DV + + + + G A+ L +L+ A+ ++ + E+
Sbjct: 133 HALVDVLGSLAVLIGLLLIL------LTGLPIADPLASLLIALLILYTGLRLLKES--LS 184
Query: 228 IEVETIHDPWLIVVVGALGLLVNVVDAIQRRLLENVDGVLAVHEFHVWQLAGDRIIASAH 287
+ DP +VD I R LE + GVL VH+ VW+ G + H
Sbjct: 185 ELLGASPDP-------------ELVDEI-RDALEKLPGVLGVHDLRVWKS-GPKYFVDIH 229
Query: 288 I---RCRNLSEYMKLAEKVKEFFHNE--GIHSTTIQPEFVE 323
I + E ++A++++ + GI TI E
Sbjct: 230 IEVDPDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAP 270
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional.
Length = 312
Score = 89.0 bits (221), Expect = 4e-20
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 135 RLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWS-KN 193
RL+ F +TA F LVE++ G+++ S+AL+AD+ HML+D AAL+ A L+V+ S + + ++
Sbjct: 20 RLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRH 79
Query: 194 TFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHD-PWLIVVVGALGLLVNVV 252
TFGW R L A VNA+ LV + I EA +RF + + + V GLL N++
Sbjct: 80 TFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVAGGMMMAIAVA--GLLANIL 137
Score = 69.4 bits (170), Expect = 3e-13
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 52 HSHDTSQMNMRGVFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVMLILRS 111
H + +N+R LH+L D LGSV II+A +I T W DP LS+L+ +L+LRS
Sbjct: 144 HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWT---PADPILSILVSVLVLRS 200
Query: 112 VWPLLQESALILLQTVPTHI 131
W LL+ES LL+ P +
Sbjct: 201 AWRLLKESVNELLEGAPVSL 220
Score = 34.3 bits (79), Expect = 0.084
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 252 VDAIQRRLLENVDGVLAVHEFHVWQLAGDRIIASAHIRCRNLSEYMKLAEKVKEFF-HNE 310
+ ++RRL + V VH HVW + G++ + + H++ ++ L ++++++ H+
Sbjct: 222 IAELKRRLCREIPEVRNVHHVHVWMV-GEKPVMTLHVQVIPPHDHDALLDRIQDYLMHHY 280
Query: 311 GIHSTTIQPEF 321
I TIQ E+
Sbjct: 281 QIEHATIQMEY 291
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 77.3 bits (191), Expect = 6e-16
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 136 LISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN-T 194
L L L++++ G +T S+AL+AD+ H LSD+ A ++ + +++S K ++
Sbjct: 19 LAVNLALA----LLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHP 74
Query: 195 FGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLLVNVVDA 254
+G +AE L +L+ ++ + A F I +EA KR I + + P L + V + +++
Sbjct: 75 YGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALY 134
Query: 255 -IQRRL 259
RR+
Sbjct: 135 RYLRRV 140
Score = 58.8 bits (143), Expect = 1e-09
Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 42/254 (16%)
Query: 66 LHILADALGSVIVIISATVIATTE-WEYRY-H--IDPALSLLMVMLILRSVWPLLQES-- 119
+H L+D + S+IV+I + + ++ Y H + SL++ +LI + + +L E+
Sbjct: 46 IHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEILLEAIK 105
Query: 120 ALILLQTVPTH-----IQKCRLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVA 174
LI Q V + ++ L + V TNS AL+AD+ H SDV
Sbjct: 106 RLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKK----TNSQALIADALHHRSDVL 161
Query: 175 ALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIH 234
+ + + + GW + L AL+ +++++ F + E+ ++
Sbjct: 162 TSLAVLVGL-------LGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDA---- 210
Query: 235 DPWLIVVVGALGLLVNVVDAIQRRLLENVDGVLAVHEFHVWQLAGDRIIASAHIR-CRNL 293
L ++ I R ++ +V GV VH+ + +G RI HI +L
Sbjct: 211 -----------ALDPEDLEKI-RAIILSVPGVKGVHDLRT-RKSGSRIFIDVHIEVDPDL 257
Query: 294 S--EYMKLAEKVKE 305
S E ++A++V++
Sbjct: 258 SLEEAHEIADEVEK 271
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 45.0 bits (107), Expect = 2e-05
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 135 RLISMFWLTA-----FFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKK 189
RL+S + A L++I + T S++L+A L D+AA + L V+ S +
Sbjct: 7 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQP 66
Query: 190 WSKN-TFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLL 248
TFG +AE L AL ++F+ + + + I ++DP + ++V + L+
Sbjct: 67 ADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALI 126
Query: 249 VNVV 252
++
Sbjct: 127 CTLI 130
Score = 30.4 bits (69), Expect = 1.3
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 19/94 (20%)
Query: 137 ISMFWLTAFFFLVEI---VVGYVTNSMALVADSFHMLSDV----AALVVAFLSVKMSPKK 189
+++ L LV VV T S A+ AD H SDV A L+ LS
Sbjct: 120 VTLVALICTLILVTFQRWVV-RKTQSQAVRADMLHYQSDVMMNGAILLALGLS------- 171
Query: 190 WSKNTFGWARAEVLGALVNAVFLVALCFSITVEA 223
W +GW RA+ L AL ++++ + EA
Sbjct: 172 W----YGWHRADALFALGIGIYILYSALRMGYEA 201
>gnl|CDD|213524 TIGR00317, cobS, cobalamin 5'-phosphate synthase/cobalamin
synthase. cobS is involved with cobalamin biosynthesis
in part III of colbalmin biosynthesis. The enzyme
catyalzes the reactions adenosylcobinamide-GDP +
alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate +
GMP and adenosylcobinamide-GDP + alpha-ribazole =
adenosylcobalamin + GMP. The protein product is
associated with a large complex of proteins and is
induced by cobinamide [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 241
Score = 33.2 bits (76), Expect = 0.17
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 173 VAALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVAL 215
+AAL A L + +++K FG +VLGA +V+L
Sbjct: 197 LAALASAILIG-LLVGRYAKRHFGGVTGDVLGASNELGEVVSL 238
>gnl|CDD|223909 COG0839, NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J)
[Energy production and conversion].
Length = 166
Score = 31.1 bits (71), Expect = 0.50
Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 26/152 (17%)
Query: 119 SALILLQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVV 178
+ ++L P + +++ + A FFL+ A +L V A++V
Sbjct: 19 ALGVVLAKNPVYSALYLALTLLSIAALFFLLG----------AEFLGVVQVLVYVGAVMV 68
Query: 179 AFLSVKMSPKKWSK-NTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPW 237
FL V M R + L ALV V L L S+ V + F+
Sbjct: 69 LFLFVVMMLNVDGAEVREEGLRGKPLAALVGLVLLALLIISVAVVS-GAFVPPSNPAAIG 127
Query: 238 LIVVVG--------------ALGLLVNVVDAI 255
I +G ++ LLV +V AI
Sbjct: 128 NIKALGSVLFTDYLLPFELASVLLLVAMVGAI 159
>gnl|CDD|111541 pfam02654, CobS, Cobalamin-5-phosphate synthase. This is family of
Colbalmin-5-phosphate synthases, CobS, from bacteria.
The CobS enzyme catalyzes the synthesis of AdoCbl-5'-p
from AdoCbi-GDP and alpha-ribazole-5'-P. This enzyme is
involved in the cobalamin (vitamin B12) biosynthesis
pathway in particular the nucleotide loop assembly stage
in conjunction with CobC, CobU and CobT.
Length = 234
Score = 31.6 bits (72), Expect = 0.50
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 173 VAALVVAFLSVKMSPKKWSKNTFGWARAEVLGA---LVNAVFLVAL 215
+ A++VA L ++ + +K FG +VLGA L V L+ L
Sbjct: 190 LIAVLVAVLIG-LALGRIAKRNFGGVTGDVLGAANELTRVVSLLGL 234
>gnl|CDD|216299 pfam01102, Glycophorin_A, Glycophorin A.
Length = 120
Score = 30.3 bits (68), Expect = 0.64
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 9 LTQLVSVGAASASATDDNDNDDHYVPPVPTA--------PPLPSEQGHGHGHSHDTSQMN 60
+ + G S+ D + +D P + T P E+G +HD S++
Sbjct: 4 ESGSATPGYISSQTNDTHTSDSAATPTMTTEVTTAFSGRTVYPPEEGDPVQLAHDFSELV 63
Query: 61 MRGVFLHILADALGSVIVI 79
+ + ++A +G++++I
Sbjct: 64 ITLIIFGVMAGIIGTILLI 82
>gnl|CDD|204597 pfam11151, DUF2929, Protein of unknown function (DUF2929). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 57
Score = 28.4 bits (64), Expect = 0.91
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 139 MFWLTAFF--FLVEIVVGYVTNSMALVADSFH---MLSDVAALVVAFLSVKMSPKK 189
M ++ FF FL+ VVGY+ +S+ +F +++ + ++V L + K
Sbjct: 1 MRYIVTFFWSFLLGQVVGYIVSSLTGGTYNFLTAIIIAVIFGILVFLLIAIIPKKS 56
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 30.5 bits (69), Expect = 1.3
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 143 TAFFFLVEIVVGYVTNSMALVADSFHMLSDV-----AALVVAFLSVKMSPKKWSKNTFGW 197
T F I+ G ++ SM+++ D + L D + LV ++ ++ +G+
Sbjct: 29 TVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARF---PYGF 85
Query: 198 ARAEVLGALVNAVFLVALCFSITVEACKRFI----EVETIHDPWLIVVVGALGLLVNVVD 253
E L +N L LC + A + EVE H +V +
Sbjct: 86 WHLEPLVLAINGTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAW-- 143
Query: 254 AIQRRLLENVDGVLAVHEFHVWQLAG 279
RRL + L + W ++
Sbjct: 144 -KLRRLNRRLKSPLIALDTKQWLMST 168
>gnl|CDD|130070 TIGR00997, ispZ, intracellular septation protein A. This partially
characterized protein, whose absence can cause a cell
division defect in an intracellularly replicating
bacterium, is found only so far only in the
Proteobacteria [Cellular processes, Cell division].
Length = 178
Score = 30.0 bits (68), Expect = 1.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 183 VKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFS 218
+++ K W K F WA + A++N VA FS
Sbjct: 109 FQLTEKGWLKLNFRWAGFFIFMAVLNEY--VATNFS 142
>gnl|CDD|226374 COG3856, Sbp, Uncharacterized conserved protein (small basic
protein) [Function unknown].
Length = 113
Score = 28.9 bits (65), Expect = 1.4
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 141 WLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKNTFGWARA 200
+ L+ IV+G V N V D + +A V+A L FG RA
Sbjct: 2 MIPIAGLLIGIVLGLVFN--PGVPDVYSPYLSIA--VLAALD----------TVFGGIRA 47
Query: 201 EVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGL-LVNVVDAIQRRL 259
+ VF+ F+I + A ++ + D +L + G+ + N + I+RRL
Sbjct: 48 YLQRTFDPKVFVSGFFFNIILAASLVYLGDQLGVDLYLAAIF-VFGVRIFNNIAVIRRRL 106
Query: 260 LE 261
L
Sbjct: 107 LG 108
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 30.2 bits (68), Expect = 1.5
Identities = 26/189 (13%), Positives = 70/189 (37%), Gaps = 5/189 (2%)
Query: 64 VFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVMLILRSVWPLLQESALIL 123
+ L +L +++++ A ++ + + ++ +LI + LL +L
Sbjct: 140 LLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLL---GALL 196
Query: 124 LQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSV 183
+ K L+ + L A L I++ + +A + + L++ L +
Sbjct: 197 ARYRKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLL 256
Query: 184 KMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVG 243
+ + + LG ++L+ + + K + + + L ++
Sbjct: 257 LLLALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLT--KLLLLLPPLGPILLFLLAL 314
Query: 244 ALGLLVNVV 252
L LLV+++
Sbjct: 315 VLTLLVSLL 323
>gnl|CDD|221020 pfam11191, DUF2782, Protein of unknown function (DUF2782). This
is a bacterial family of proteins whose function is
unknown.
Length = 104
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 12 LVSVGAASASATDDNDNDDHYVPPVPTAPPLPSEQ 46
L + AA A A D DD P+P P P ++
Sbjct: 4 LALLLAAPALAAADAATDD-DPIPLPAIPTTPEDK 37
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 30.2 bits (69), Expect = 1.8
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 171 SDVA-ALVVAFLS---VKMSPKKWSKNTFGWARAEVLGA 205
++VA ALV FL+ VK KK +K+ +A VLGA
Sbjct: 283 TNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGA 321
>gnl|CDD|226496 COG4008, COG4008, Predicted metal-binding transcription factor
[Transcription].
Length = 153
Score = 29.1 bits (65), Expect = 1.9
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 292 NLS--EYMKLAEKVKEFFHNEGIHSTTIQPEFVELTEFAENKVSEDPSEDCVLD 343
N+S EYM+L +++ E+ +P E+ A+ V+ + + + + +
Sbjct: 90 NMSPEEYMELKKQLAEYILGHS------EPPVEEVEVLADAFVTPEEAREALEE 137
>gnl|CDD|218950 pfam06236, MelC1, Tyrosinase co-factor MelC1. This family
consists of several tyrosinase co-factor MELC1 proteins
from a number of Streptomyces species. The melanin
operon (melC) of Streptomyces antibioticus contains two
genes, melC1 and melC2 (apotyrosinase). It is thought
that MelC1 forms a transient binary complex with the
downstream apotyrosinase MelC2 to facilitate the
incorporation of copper ion and the secretion of
tyrosinase indicating that MelC1 is a chaperone for the
apotyrosinase MelC2.
Length = 124
Score = 28.7 bits (64), Expect = 2.5
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 14 SVGAASASATDDNDNDDHYVPPVPTAPPLPSE----------QGH----GHGHSHDTSQM 59
A+A D P+ QG G H +
Sbjct: 13 LAAGGEAAAAPDAAAHPGPSTGRGAPGGAPASFDEVYKGRRIQGGPSAGGGHHHGGGYAV 72
Query: 60 NMRGVFLHILADALGSVIVIIS 81
+ G LH++ +A GS I ++S
Sbjct: 73 FVDGRPLHVMRNADGSWISVVS 94
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 29.6 bits (67), Expect = 3.0
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 72 ALGSVIVIISATVIATTEWEYRYHI--DPALS 101
A G + I ATT EYR +I D AL
Sbjct: 296 ARGELRCIG-----ATTLDEYRKYIEKDAALE 322
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 29.3 bits (66), Expect = 3.4
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 134 CRLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSKN 193
C L++M+ +TAF + Y T ++ L + F ++ LV + + W +
Sbjct: 261 CELLTMYIVTAF------ALNYSTQNLGLPRELF---LNIGLLVGGLSCLTIPCFAWLAD 311
Query: 194 TFGWARAEVLGALVNAV----FLVAL 215
FG R + GAL+ + F +AL
Sbjct: 312 RFGRRRVYITGALIGTLSAFPFFMAL 337
>gnl|CDD|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate
dikinase [Carbohydrate transport and metabolism].
Length = 740
Score = 29.3 bits (66), Expect = 3.6
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 173 VAALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVET 232
+ L++ VK+ G A LG ++ V F+IT EA + F++
Sbjct: 1 MMNLILWLDEVKLEDV----GLVGGKGAS-LGEMLKMGLPVPPGFAITSEAYRYFLKENG 55
Query: 233 IHDPWLIVVVGALGLLVNVVDAIQRR 258
+ D L ++ L +N ++ R
Sbjct: 56 LADKILKILS---ALDLNDNVELEFR 78
>gnl|CDD|220516 pfam10004, DUF2247, Uncharacterized protein conserved in bacteria
(DUF2247). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 161
Score = 28.6 bits (64), Expect = 3.8
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 221 VEACKRFIEVETIHDPWLIVVVGALGLLVNVVDAIQRRLLENVDGVLAVHEFHVWQLAGD 280
VE + + + D +V++ + L V + +L E W
Sbjct: 35 VEYAVKLLSIGD-SDEDELVLLLSWKLEDAEVGKLLEKLASKDKSEDRSRELRKWLYI-- 91
Query: 281 RIIASAHIRCRNLSEYMKLAEKVKEFF 307
+++ + E+V+E +
Sbjct: 92 -LLSWLFHNS---EDDEDPLEEVEEIY 114
>gnl|CDD|219050 pfam06478, Corona_RPol_N, Coronavirus RPol N-terminus. This family
covers the N-terminal region of the coronavirus
RNA-directed RNA Polymerase.
Length = 356
Score = 28.9 bits (65), Expect = 3.9
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 265 GVLAVHEFHVWQLAGDRIIASAHIRCRNLSEY--MKLAEKVKEF 306
G +A H+F ++ ++ + L++Y M L ++ F
Sbjct: 83 GAVAEHDFFTFKDGRVIY---GNVSRQRLTKYTMMDLCYALRHF 123
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is generated from
the calcium ion/proton exchangers of the CacA family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 365
Score = 28.5 bits (64), Expect = 5.9
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 22/151 (14%)
Query: 51 GHSHDTSQMNMRGVFLHILAD-ALGSVIVIISATVIATTEWEYRYHIDPALSLL----MV 105
G + Q RG A L + +++ + A + D L L +V
Sbjct: 122 GIKNIREQRFNRGAAQVNSALLLLAILSLVLPLALPAG-----KPGQDSILGLSRGIAIV 176
Query: 106 MLILRSVWPLLQ---ESALILLQ------TVPTHIQKCRLISMFWLTAFFFLVEIVVGYV 156
MLIL + + Q L Q ++ +IS + A+ IVV +
Sbjct: 177 MLILYGAFLVFQLVTHRQLFEPQEEADSDYDDEVHEEPTVISPWSAAAWLVGATIVVALL 236
Query: 157 TNSMALVADSFHMLSDVAALVVAFLSVKMSP 187
+ D+ + L VAF+ V ++P
Sbjct: 237 AE---YLVDTIESAVESWGLSVAFIGVILAP 264
>gnl|CDD|233951 TIGR02614, ftsW, cell division protein FtsW. This family consists
of FtsW, an integral membrane protein with ten
transmembrane segments. In general, it is one of two
paralogs involved in peptidoglycan biosynthesis, the
other being RodA, and is essential for cell division.
All members of the seed alignment for this model are
encoded in operons for the biosynthesis of
UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein
(peptidoglycan). The FtsW designation is not used in
endospore-forming bacterial (e.g. Bacillus subtilis),
where the member of this family is designated SpoVE and
three or more RodA/FtsW/SpoVE family paralogs are
present. SpoVE acts in spore cortex formation and is
dispensible for growth. Biological rolls for FtsW in
cell division include recruitment of penicillin-binding
protein 3 to the division site [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 356
Score = 28.3 bits (64), Expect = 6.1
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 138 SMFWLTAFFFLVEIVVGYVTNSMALVA----DSFHMLSD-----VAALVVAFLSVKMSPK 188
+ ++ + +V+ Y + S A+ D F+ L + L++ F++ ++ +
Sbjct: 3 LLLFVVLLLLGIGLVMVY-SASAAVALRLGGDPFYFLKRQLFYALLGLILMFVASRLPLR 61
Query: 189 KWSKNTFGWARAEVLGALVNAVFLVAL 215
W K + L+ V LV +
Sbjct: 62 FWRKLSV-------PILLIAIVLLVLV 81
>gnl|CDD|199847 cd03865, M14_CPE, Peptidase M14 carboxypeptidase subfamily
N/E-like; Carboxypeptidase E subgroup. Peptidase M14
Carboxypeptidase (CP) E (CPE, also known as
carboxypeptidase H, and enkephalin convertase; EC
3.4.17.10) belongs to the N/E subfamily of the M14
family of metallocarboxypeptidases (MCPs).The M14 family
are zinc-binding CPs which hydrolyze single, C-terminal
amino acids from polypeptide chains, and have a
recognition site for the free C-terminal carboxyl group,
which is a key determinant of specificity. CPE is an
important enzyme responsible for the proteolytic
processing of prohormone intermediates (such as
pro-insulin, pro-opiomelanocortin, or
pro-gonadotropin-releasing hormone) by specifically
removing C-terminal basic residues. In addition, it has
been proposed that the regulated secretory pathway (RSP)
of the nervous and endocrine systems utilizes
membrane-bound CPE as a sorting receptor. A naturally
occurring point mutation in CPE reduces the stability of
the enzyme and causes its degradation, leading to an
accumulation of numerous neuroendocrine peptides that
result in obesity and hyperglycemia. Reduced CPE enzyme
and receptor activity could underlie abnormal placental
phenotypes from the observation that CPE is
down-regulated in enlarged placentas of interspecific
hybrid (interspecies hybrid placental dysplasia, IHPD)
and cloned mice.
Length = 323
Score = 28.4 bits (63), Expect = 6.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 194 TFGWARAEVLGALVNAVFLVALCFSITVE-ACKRFIEVETIHDPW 237
T G A V G + + +L + CF ITVE +C +F ET+ W
Sbjct: 266 TNGGAWYSVPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQYW 310
>gnl|CDD|222237 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4-like domain.
Length = 158
Score = 27.8 bits (62), Expect = 6.5
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 232 TIHDPWLIVVVGALGLLVNVVDAIQRRLLENVDGVLAVHEFHVWQLAGDRIIASAHIR 289
+ P + + GL + A++RRLL D V+AV E +L + +A +
Sbjct: 97 VVVTPHGLALRQGSGLKRRLARALERRLLRRADAVVAVSEAEA-ELLRALGVPAARVV 153
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 28.3 bits (64), Expect = 6.8
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 99 ALSLLMVMLILRSVWPLLQESALILLQTVPTHIQKCRLISMF 140
AL++L+ +LIL +V+P+ + LILL T P LI +F
Sbjct: 145 ALAVLVPLLILIAVFPINWAAGLILLGTAP-------LIPLF 179
>gnl|CDD|218171 pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family
represents a family of bacterial
phosphatidylglycerophosphatases (EC:3.1.3.27), known as
PgpA. It appears that bacteria possess several
phosphatidylglycerophosphatases, and thus, PgpA is not
essential in Escherichia coli.
Length = 144
Score = 27.1 bits (61), Expect = 7.7
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 195 FGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVV 241
E+L L V V L F + + C ++ HDP IV+
Sbjct: 28 LYLLLLELLEGLELLVLEVLLAFLVGIWLCGLAEKLLGEHDPGEIVI 74
>gnl|CDD|133477 cd06971, PgpA, Phosphatidylglycerophosphatase A; a bacterial
membrane-associated enzyme involved in lipid metabolism.
Phosphatidylglycerophosphatase A domain represents a
family of bacterial membrane-associated enzymes involved
in lipid metabolism. The prototype of this CD is a
putative Phosphatidylglycerophosphatase A (PGPase A)
from Listeria monocytogenes. PGPase A (EC: 3.1.3.27),
encoded by the gene pgpA, specifically catalyzes the
formation of phosphatidylglycerol from phosphatidyl
glycerophosphate (PGP). It requires Mg2+ for activity
and is inhibited by sulfhydryl agents and
freezing/thawing. PGPase B encoded from pgpB is not
included in this family, which also acts on phosphatidic
acid (PA) and lysophosphatidic acid (LPA). Aside from
PGPase A and B, evidence shows that there is another
PGPase existing in E. coli. Thus, PGPase A is not
essential for PGPase activity in E. coli.
Length = 143
Score = 27.1 bits (61), Expect = 7.8
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 195 FGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVV 241
+E+ L+ + + L F + + A ++ ++ +HDP IV+
Sbjct: 28 LELLLSELGKVLLE-LLALLLAFLLGIWAAEKTLKDLGVHDPGEIVI 73
>gnl|CDD|119265 pfam10745, DUF2530, Protein of unknown function (DUF2530). This
family of proteins with unknown function appears to be
restricted to mycobacteria.
Length = 77
Score = 26.2 bits (58), Expect = 8.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 235 DPWLIVVVGALGLLVNVVDAI 255
DPW ++ VG LG LV VV A
Sbjct: 13 DPWPVIAVGTLGWLVAVVAAF 33
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 27.8 bits (62), Expect = 8.7
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 4 KSQNRLTQLVSVGAASASATDDNDNDDHYVPPVPTAPPLPSEQGHGHG-----HSHDTSQ 58
S +R ++ ASA D DD VPP+ +PP P E H
Sbjct: 184 PSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPTISASQPAQRDHAVLA 243
Query: 59 MNMRG 63
+RG
Sbjct: 244 PFLRG 248
>gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38
C-terminal domain. Glycosyl hydrolases are key enzymes
of carbohydrate metabolism.
Length = 379
Score = 27.8 bits (62), Expect = 9.5
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 193 NTFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLLVNVV 252
N W R EV+ V++ + S+ +E + +L V GLL ++
Sbjct: 7 NPLAWERTEVVTIPVSSPNVSVTDESVILE------------NGFLKVEFDPTGLLKSIY 54
Query: 253 D-AIQRRLLENVDGVLAVHE-----FHVWQLAGDRIIAS 285
D R +L V ++E + W + D
Sbjct: 55 DKENGREVLAGVGNQFQLYEDKPLYWDAWDIDKDYEEKP 93
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 28.0 bits (63), Expect = 9.5
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 37 PTAPPLPSEQGHGHGHSHDTSQMNMRGVFLHILADALGSVIVIISATVIATTEWEYRYHI 96
P A ++ G + N GS I ISA + +T + Y +
Sbjct: 245 PDATATNNDDNEKEGTDSVSISFN-------------GSWI-EISAA-LNSTPLKLVYQV 289
Query: 97 DPALSLLMVMLILRSVWPLLQESALILL 124
P +LL+ +L ++WPLL L+ L
Sbjct: 290 -PLGTLLLDLLQ-NNLWPLLLNLGLLAL 315
>gnl|CDD|240605 cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria.
This family includes vitamin K epoxide reductase (VKOR)
mostly present in actinobacteria. VKOR (also named
VKORC1) is an integral membrane protein that catalyzes
the reduction of vitamin K 2,3-epoxide and vitamin K to
vitamin K hydroquinone, an essential co-factor
subsequently used in the gamma-carboxylation of glutamic
acid residues in blood coagulation enzymes. All homologs
of VKOR contain an active site CXXC motif, which is
switched between reduced and disulfide-bonded states
during the reaction cycle. In some bacterial homologs,
the VKOR domain is fused with domains of the thioredoxin
family of oxidoreductases which may function as redox
partners in initiating the reduction cascade.
Length = 133
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 237 WLIVVVGALGLLVNVVDAIQR-RLLENVDGVLA 268
WL++V G +GL+ + V +++ +LLE+ D VL+
Sbjct: 1 WLLLVAGLIGLVASFVLTVEKIQLLEDPDYVLS 33
>gnl|CDD|223939 COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N)
[Energy production and conversion].
Length = 475
Score = 28.0 bits (63), Expect = 9.8
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 99 ALSLLMVMLILRSVWPLLQESALILLQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYVTN 158
AL LL+V L +R LL A++ L L A L+ I
Sbjct: 18 ALVLLLVGLFIRRSRSLLAYLAVLGL-----------------LAALASLLFIAYRGSAF 60
Query: 159 SMALVADSFHMLSDVAALVVAFLSVKMS-PKKWSKNTF 195
+ A + D+ +L + L+ + ++ +S P TF
Sbjct: 61 AGAFIVDALALLMKIVVLLASLAALILSLPYLERAGTF 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.411
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,385,131
Number of extensions: 1817909
Number of successful extensions: 2132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2104
Number of HSP's successfully gapped: 83
Length of query: 363
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 265
Effective length of database: 6,590,910
Effective search space: 1746591150
Effective search space used: 1746591150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.7 bits)