RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15324
(363 letters)
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 76.0 bits (186), Expect = 8e-17
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 135 RLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALVVAFLSVKMSPKKWSK-N 193
I+ + + L++I + T S++++A L D+ A + L V+ S + +
Sbjct: 8 AAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNH 67
Query: 194 TFGWARAEVLGALVNAVFLVALCFSITVEACKRFIEVETIHDPWLIVVVGALGLLVNVV 252
+FG +AE L AL ++F+ + + + I + DP + V+V + L+ ++
Sbjct: 68 SFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTII 126
Score = 47.8 bits (113), Expect = 4e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 48 HGHGHSHDTSQMNMRGVFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVML 107
T +R LH +D + + ++++ ++ W D +L + +
Sbjct: 130 FQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLAL-GLSWYGWHR---ADALFALGIGIY 185
Query: 108 ILRSVWPLLQESALILL 124
IL S + E+ LL
Sbjct: 186 ILYSALRMGYEAVQSLL 202
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
{Escherichia coli [TaxId: 562]}
Length = 82
Score = 31.2 bits (71), Expect = 0.036
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 257 RRLLENVDGVLAVHEFHVWQLAGDRIIASAHIRCR---NLSEYMKLAEKVKEFFHNE-GI 312
++ + GV H+ Q +G H+ L + +A++V++
Sbjct: 11 IDIVTSWPGVSGAHDLRTRQ-SGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG 69
Query: 313 HSTTIQPE 320
I +
Sbjct: 70 SDVIIHQD 77
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 176
Score = 28.3 bits (62), Expect = 1.0
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 3/121 (2%)
Query: 168 HMLSDVAALVVAFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITVEACKRF 227
H+ V + G A G + +A + + +
Sbjct: 35 HIYIRRHPDDVYQGKCPYHGDCFEGLASGPAIEARWGKKAADLSDIAQVWELEGYYIAQA 94
Query: 228 IE-VETIHDPWLIVVVGALGLLVNVVDAIQRRLLENVDGVLAVHEFHVWQLAGDRIIASA 286
+ I P I++ G + V I + + + ++ L E D I+
Sbjct: 95 LAQYILILAPKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELS--DDISDYIVPPR 152
Query: 287 H 287
Sbjct: 153 L 153
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 405
Score = 28.4 bits (62), Expect = 1.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 203 LGALVNAVFLVALCFSITVEACKRFIEVETIHD 235
L +VN V F+IT EACK + E ETI
Sbjct: 31 LAEMVNLGIPVPPGFTITTEACKTYQETETIPQ 63
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 380
Score = 27.6 bits (60), Expect = 2.5
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 203 LGALVNAVFLVALCFSITVEACKRFIE 229
L + + V F+++ EAC+++ +
Sbjct: 29 LAEMASIGLSVPPGFTVSTEACQQYQD 55
>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
{Chloroflexus aurantiacus [TaxId: 1108]}
Length = 346
Score = 27.2 bits (60), Expect = 3.0
Identities = 5/51 (9%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 243 GALGLLVNVVDAIQRRLLENVDGVLAVHEFHV----WQLAGDRIIASAHIR 289
+ V+ QR + + + ++++ E + + + + I
Sbjct: 221 SGQHWIETVLTPEQRAVFDRIQALMSLIEGYGNHVMNAVGRRLLPSFNQIE 271
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 375
Score = 27.3 bits (59), Expect = 3.5
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 203 LGALVNAVFLVALCFSITVEACKRFIE 229
L + + F++T EAC +
Sbjct: 25 LAEMTILGMPIPQGFTVTTEACTEYYN 51
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 26.9 bits (59), Expect = 5.4
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 60 NMRGVFLHILADALGSVIVIISATVIAT---TEWEYRYHIDPALSLLMVMLILRSVWPLL 116
N+ G++ ILA+ + + + +V EW+ +DP L V I+ P
Sbjct: 548 NLLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIV----PQY 603
Query: 117 QESALILLQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYVTNSMALV-ADSFHM---LSD 172
Q IL + VP I + L+ V ++N + AD FH+
Sbjct: 604 Q----ILNEAVPDFFAGGEDILILQ------LIRAVYDTLSNKLGRNPADIFHLEEVFKV 653
Query: 173 VAALVVAFLSVKMSPKKW 190
+ +V + K+ +K+
Sbjct: 654 IEEIVSVLVQQKIDVRKY 671
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 24.8 bits (54), Expect = 5.4
Identities = 2/13 (15%), Positives = 7/13 (53%)
Query: 298 KLAEKVKEFFHNE 310
K+A++++
Sbjct: 53 KIAKEIRRVITAP 65
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 26.2 bits (56), Expect = 7.7
Identities = 12/152 (7%), Positives = 40/152 (26%), Gaps = 5/152 (3%)
Query: 63 GVFLHILADALGSVIVIISATVIATTEWEYRYHIDPALSLLMVMLILRSVWPLLQESAL- 121
+ ++D + + + ++A + + A S + VM +L + Q
Sbjct: 76 KFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 135
Query: 122 ----ILLQTVPTHIQKCRLISMFWLTAFFFLVEIVVGYVTNSMALVADSFHMLSDVAALV 177
++ + + + ++ + + + + A++
Sbjct: 136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 195
Query: 178 VAFLSVKMSPKKWSKNTFGWARAEVLGALVNA 209
VA + M +
Sbjct: 196 VALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.411
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,328,945
Number of extensions: 59383
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 14
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)