BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15325
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 6/100 (6%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------ 54
F+ EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F G
Sbjct: 139 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 198
Query: 55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 199 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 238
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 45 TGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
+ + + QAKQTLADIEARHADI+KLE SIRELHDMFMDMAMLVE+Q DR +N
Sbjct: 3 SASGIIMETQQAKQTLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYN 62
>pdb|1S94|A Chain A, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin
From The Squid Loligo Pealei
pdb|1S94|B Chain B, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin
From The Squid Loligo Pealei
Length = 180
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG 46
F+ +YN TQ DYR+RCK RI+RQ+EITGRTTTNEELE ML++G
Sbjct: 135 FVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 54 GQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2 SHSKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 42
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%), Gaps = 3/49 (6%)
Query: 56 AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQD---DRGNHN 101
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q DR +N
Sbjct: 9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 37/39 (94%)
Query: 56 AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 47
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 35/37 (94%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
Q L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 1 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 37
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A
Complex Between The N-Terminal Region Of Snap25 And The
Snare Region Of Syntaxin 1a
Length = 77
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 34/36 (94%)
Query: 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 36
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 38
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 38
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 62
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q
Sbjct: 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQ 38
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ------ 53
FL ++Y ++Y+E K + +RQ I T +E+EA + D G +F+Q
Sbjct: 93 FLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNAN 152
Query: 54 --GQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLV 91
G+AK LA+++ARH +++KLE S+ EL +F DM LV
Sbjct: 153 RRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV 192
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFT----QGQA 56
F+ YN Q + + R + RQ + + +++ ++ +++ G +F+ +G A
Sbjct: 147 FVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEG-A 205
Query: 57 KQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
+ L +I RH DI +LE S+ ELH+MF DM+ LV +Q
Sbjct: 206 EAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQ 243
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQ 24
F+ EYN TQ+DYRERCKGRIQ
Sbjct: 104 FVEVMSEYNATQSDYRERCKGRIQ 127
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLV 91
LA+++ARH +++KLE S+ EL +F DM LV
Sbjct: 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELV 33
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 1 FLLYWREYNRTQTDYRERCK 20
F+ EYN TQ+DYRER K
Sbjct: 101 FVEVMSEYNATQSDYRERSK 120
>pdb|3H4C|A Chain A, Structure Of The C-Terminal Domain Of Transcription Factor
Iib From Trypanosoma Brucei
Length = 260
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 58 QTLADIEARHADIIK---LENSIRELHDMFMD 86
+L D+E R ADI++ LE+S R L D F D
Sbjct: 86 SSLGDVELRRADIVRELHLEDSERRLRDTFAD 117
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 23 IQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQ 58
+Q++L IT T+++ EAM AVF QG+ Q
Sbjct: 179 LQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214
>pdb|1Z29|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 5 WREYNRTQT-------DYRERCKGRIQRQLEITGRTTTNEELEAMLD 44
W E +RT D +E K IQ+ LE GR+ E ++ M++
Sbjct: 179 WWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETVDLMVE 225
>pdb|1CJM|A Chain A, Human Sult1a3 With Sulfate Bound
pdb|2A3R|A Chain A, Crystal Structure Of Human Sulfotransferase Sult1a3 In
Complex With Dopamine And 3-Phosphoadenosine 5-Phosphate
pdb|2A3R|B Chain B, Crystal Structure Of Human Sulfotransferase Sult1a3 In
Complex With Dopamine And 3-Phosphoadenosine 5-Phosphate
Length = 295
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 5 WREYNRTQT-------DYRERCKGRIQRQLEITGRTTTNEELEAML 43
W E +RT D +E K IQ+ LE GR+ E ++ M+
Sbjct: 179 WWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMV 224
>pdb|4GRA|A Chain A, Crystal Structure Of Sult1a1 Bound With Pap
pdb|4GRA|B Chain B, Crystal Structure Of Sult1a1 Bound With Pap
Length = 299
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 5 WREYNRTQT-------DYRERCKGRIQRQLEITGRTTTNEELEAML 43
W E +RT D +E K IQ+ LE GR+ E ++ M+
Sbjct: 183 WWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETVDFMV 228
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 43 LDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRE 79
L TGN + QAK+TLA A D E S R+
Sbjct: 91 LITGNAVILACRQAKETLAKTAAEKLDCAPEELSFRD 127
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 44 DTGNPAVFTQ----GQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
DTG ++ + Q + +A + I +LEN + + + FMD+AM +E
Sbjct: 262 DTGEKGIYGRYLINAQGEDVVAGVRTPQP-ITQLENDMPDCYKQFMDLAMKLEKH 315
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 22 RIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQ 58
++QRQL +T T++++EAM AV +G +Q
Sbjct: 184 KLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220
>pdb|3LG7|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold
4e10_s0_1ez3a_002_c
pdb|3LG7|B Chain B, Crystal Structure Of Hiv Epitope-Scaffold
4e10_s0_1ez3a_002_c
pdb|3LG7|C Chain C, Crystal Structure Of Hiv Epitope-Scaffold
4e10_s0_1ez3a_002_c
Length = 133
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 6 REYNRTQTDYRERCKGR 22
+EYN TQ DYR+R + R
Sbjct: 108 KEYNATQQDYRKRARKR 124
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 27 LEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLAD 62
+E++G+T + ++ +LD+G + Q Q LAD
Sbjct: 201 VEVSGKTINTDNVDVLLDSGTTITYLQ----QDLAD 232
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 27 LEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLAD 62
+E++G+T + ++ +LD+G + Q Q LAD
Sbjct: 201 VEVSGKTINTDNVDVLLDSGTTITYLQ----QDLAD 232
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 15 YRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKL 73
++E +I RQ+ + EE+E +L+ + F GQ + A +AR A + L
Sbjct: 382 HKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQPRHIDAGGKARRAHLPNL 440
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 22 RIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQ 58
++Q++L++T T++++EAM AV +GQ Q
Sbjct: 186 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 22 RIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQ 58
++Q++L++T T++++EAM AV +GQ Q
Sbjct: 187 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,842,334
Number of Sequences: 62578
Number of extensions: 92354
Number of successful extensions: 274
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 42
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)