Query psy15325
Match_columns 102
No_of_seqs 111 out of 612
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:06:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810|consensus 100.0 7.7E-32 1.7E-36 202.0 12.6 101 1-101 132-239 (297)
2 COG5074 t-SNARE complex subuni 99.9 4.3E-25 9.3E-30 160.0 11.3 102 1-102 109-219 (280)
3 KOG0809|consensus 99.5 3.6E-13 7.7E-18 100.6 8.9 96 2-101 150-251 (305)
4 cd00179 SynN Syntaxin N-termin 99.4 3.8E-13 8.3E-18 91.1 6.2 53 1-53 97-149 (151)
5 KOG0811|consensus 99.4 2E-12 4.4E-17 96.2 8.8 46 56-101 168-213 (269)
6 COG5325 t-SNARE complex subuni 99.0 3.1E-09 6.7E-14 79.1 10.7 42 60-101 187-228 (283)
7 cd00193 t_SNARE Soluble NSF (N 99.0 2.1E-10 4.6E-15 66.2 3.6 39 64-102 2-40 (60)
8 PF05739 SNARE: SNARE domain; 98.9 1.5E-09 3.3E-14 63.8 4.6 37 65-101 1-37 (63)
9 smart00397 t_SNARE Helical reg 98.9 3.8E-09 8.3E-14 61.7 5.3 43 59-101 3-45 (66)
10 KOG0812|consensus 98.4 4.4E-07 9.6E-12 68.1 5.3 43 59-101 218-260 (311)
11 PF09164 VitD-bind_III: Vitami 90.0 0.82 1.8E-05 27.5 4.1 29 13-45 12-40 (68)
12 PF11598 COMP: Cartilage oligo 75.8 8.1 0.00017 21.4 3.9 23 72-94 5-27 (45)
13 TIGR01834 PHA_synth_III_E poly 74.6 38 0.00082 26.3 9.0 41 1-42 254-294 (320)
14 TIGR02132 phaR_Bmeg polyhydrox 68.9 40 0.00087 24.1 10.0 40 1-41 37-76 (189)
15 PF09712 PHA_synth_III_E: Poly 60.7 71 0.0015 24.2 7.7 39 2-41 238-276 (293)
16 PRK09343 prefoldin subunit bet 60.2 46 0.00099 21.8 8.1 86 2-87 10-104 (121)
17 PF05008 V-SNARE: Vesicle tran 57.6 37 0.00081 20.0 4.7 28 64-91 21-48 (79)
18 PRK04325 hypothetical protein; 56.6 37 0.0008 20.5 4.5 30 58-87 26-56 (74)
19 PF07544 Med9: RNA polymerase 55.5 31 0.00066 21.1 4.1 29 63-91 54-82 (83)
20 PF04102 SlyX: SlyX; InterPro 53.1 46 0.00099 19.6 4.7 24 65-88 29-52 (69)
21 TIGR02338 gimC_beta prefoldin, 51.2 62 0.0013 20.6 8.1 87 2-88 6-101 (110)
22 PF13334 DUF4094: Domain of un 47.9 27 0.00059 22.2 3.0 27 55-81 60-86 (95)
23 PF08700 Vps51: Vps51/Vps67; 47.3 60 0.0013 19.3 5.3 33 60-92 50-82 (87)
24 PF12325 TMF_TATA_bd: TATA ele 44.3 50 0.0011 21.8 4.0 31 57-87 85-115 (120)
25 KOG3894|consensus 44.0 1E+02 0.0023 23.8 6.1 45 57-101 221-265 (316)
26 PRK00295 hypothetical protein; 43.9 68 0.0015 18.9 4.5 30 58-87 22-52 (68)
27 KOG0028|consensus 43.7 28 0.00061 24.6 2.8 23 23-45 128-150 (172)
28 PRK13676 hypothetical protein; 41.5 92 0.002 19.8 9.7 30 4-42 41-70 (114)
29 KOG0031|consensus 41.1 49 0.0011 23.3 3.6 28 20-47 51-78 (171)
30 KOG3046|consensus 40.8 53 0.0011 22.6 3.7 27 66-92 10-36 (147)
31 PF11464 Rbsn: Rabenosyn Rab b 39.3 46 0.001 18.1 2.6 20 65-84 19-38 (42)
32 KOG3202|consensus 38.8 96 0.0021 23.0 5.1 41 61-101 145-185 (235)
33 PRK02793 phi X174 lysis protei 38.1 89 0.0019 18.6 4.5 30 57-86 24-54 (72)
34 KOG3478|consensus 37.0 1.3E+02 0.0027 20.0 9.5 86 2-87 8-102 (120)
35 PF02346 Vac_Fusion: Chordopox 34.9 94 0.002 18.0 3.7 26 63-88 24-49 (57)
36 PF05377 FlaC_arch: Flagella a 34.3 95 0.0021 17.9 4.5 25 61-85 21-45 (55)
37 PRK00736 hypothetical protein; 34.1 1E+02 0.0022 18.1 4.5 29 58-86 22-51 (68)
38 PF11460 DUF3007: Protein of u 33.6 1.3E+02 0.0027 19.6 4.4 37 8-44 64-100 (104)
39 PRK02119 hypothetical protein; 32.5 1.1E+02 0.0025 18.2 4.8 30 57-86 25-55 (73)
40 PF06133 DUF964: Protein of un 32.1 1.3E+02 0.0027 18.6 8.4 26 67-92 77-102 (108)
41 cd00632 Prefoldin_beta Prefold 30.7 1.4E+02 0.003 18.7 9.0 89 1-89 1-98 (105)
42 PRK04406 hypothetical protein; 29.3 1.4E+02 0.0029 18.1 4.5 29 58-86 28-57 (75)
43 KOG3065|consensus 28.8 87 0.0019 23.7 3.6 37 66-102 216-252 (273)
44 PF08920 SF3b1: Splicing facto 28.5 68 0.0015 22.0 2.7 26 20-45 73-98 (144)
45 PF15466 DUF4635: Domain of un 27.1 86 0.0019 21.0 2.9 24 67-90 97-120 (135)
46 PHA02117 glutathionylspermidin 26.0 1.5E+02 0.0032 23.6 4.6 29 67-95 46-74 (397)
47 PF05256 UPF0223: Uncharacteri 25.8 1.8E+02 0.0039 18.3 4.4 53 31-88 8-64 (88)
48 PF13779 DUF4175: Domain of un 25.4 3.9E+02 0.0085 23.4 7.3 93 3-100 496-606 (820)
49 PF13342 Toprim_Crpt: C-termin 25.3 55 0.0012 19.0 1.6 21 29-49 11-31 (62)
50 cd05027 S-100B S-100B: S-100B 25.1 76 0.0017 19.4 2.3 17 72-88 2-18 (88)
51 cd04259 AAK_AK-DapDC AAK_AK-Da 24.6 3E+02 0.0065 20.7 5.8 32 57-88 61-101 (295)
52 PF08863 YolD: YolD-like prote 24.5 1.1E+02 0.0024 18.2 3.0 28 15-42 4-31 (92)
53 PF08181 DegQ: DegQ (SacQ) fam 23.1 1.4E+02 0.0031 16.2 2.9 21 61-81 18-38 (46)
54 COG0754 Gsp Glutathionylspermi 22.5 1.5E+02 0.0033 23.6 3.9 26 73-98 49-74 (387)
55 KOG4403|consensus 22.3 2.3E+02 0.0051 23.3 5.0 42 46-87 229-271 (575)
56 PRK10507 bifunctional glutathi 21.9 1.7E+02 0.0037 24.8 4.3 33 67-99 257-289 (619)
57 PF07011 DUF1313: Protein of u 21.9 1.5E+02 0.0032 18.7 3.1 23 69-91 50-72 (87)
58 PF13232 Complex1_LYR_1: Compl 21.6 1.6E+02 0.0035 16.3 3.3 32 15-46 22-53 (61)
59 PF09682 Holin_LLH: Phage holi 21.4 2E+02 0.0044 18.2 3.8 18 27-44 81-98 (108)
60 cd04244 AAK_AK-LysC-like AAK_A 20.9 3.7E+02 0.008 20.2 5.8 31 58-88 64-108 (298)
No 1
>KOG0810|consensus
Probab=99.98 E-value=7.7e-32 Score=202.03 Aligned_cols=101 Identities=55% Similarity=0.792 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHhCCCcchhhhh------HHHHHHHHHHHHHHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGR-TTTNEELEAMLDTGNPAVFTQG------QAKQTLADIEARHADIIKL 73 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~-~~tdeei~~~i~~~~~~~f~~~------~~~~~l~~i~~R~~eI~~l 73 (102)
|.++|..|+..|..|+++||.+++|||.+++| .++|++|+.++++|++++|+++ +++++|+++++||.+|++|
T Consensus 132 f~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~L 211 (297)
T KOG0810|consen 132 LKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHDEIKKL 211 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999 8999999999999999999877 7899999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 74 ENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 74 E~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
|+||.||||||+|||+||+.||||||+|
T Consensus 212 Eksi~ELhqlFlDMa~LVe~QgEmvd~I 239 (297)
T KOG0810|consen 212 EKSIRELHQLFLDMAVLVESQGEMVDRI 239 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999997
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.93 E-value=4.3e-25 Score=160.02 Aligned_cols=102 Identities=34% Similarity=0.552 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC-CCcchhhhh--------HHHHHHHHHHHHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDT-GNPAVFTQG--------QAKQTLADIEARHADII 71 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~-~~~~~f~~~--------~~~~~l~~i~~R~~eI~ 71 (102)
|.+++++|+.++..|++..+.+++|||-|+.|++|++|++..|.+ ++.++|.+. .++.+|.++++||.+|+
T Consensus 109 f~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAktaL~Evq~Rh~~ik 188 (280)
T COG5074 109 FLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAKTALAEVQARHQEIK 188 (280)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999966 567899876 68999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325 72 KLENSIRELHDMFMDMAMLVENQDDRGNHNN 102 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla~LV~~QGe~id~~~ 102 (102)
+||++|.||.+||+||+.||.+|.+++|-||
T Consensus 189 kiEkt~ael~qLfndm~~~V~eq~e~Vd~I~ 219 (280)
T COG5074 189 KIEKTMAELTQLFNDMEELVIEQQENVDVID 219 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 9999999999999999999999999999875
No 3
>KOG0809|consensus
Probab=99.46 E-value=3.6e-13 Score=100.59 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHhCCCcchhhhh---HHHHHHHHHHHHHHHHHHHHH
Q psy15325 2 LLYWREYNRTQTDYRERCKGRIQRQLEI---TGRTTTNEELEAMLDTGNPAVFTQG---QAKQTLADIEARHADIIKLEN 75 (102)
Q Consensus 2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i---~~~~~tdeei~~~i~~~~~~~f~~~---~~~~~l~~i~~R~~eI~~lE~ 75 (102)
.++..+|+..|..|.++++.+-++.... +.|..+..+.+.+.. ..|++. ..+.+-..+.+|.++|.+|-+
T Consensus 150 Q~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~----~~~qe~ql~~~e~~~~~~~erE~EV~ql~~ 225 (305)
T KOG0809|consen 150 QTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSD----RTFQEQQLMLFENNEEVVREREKEVTQLVE 225 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhh----hhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4678899999999999999997765322 223222222222211 234332 335566789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 76 SIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 76 si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
||.||++||+||++||.+||.+||+|
T Consensus 226 sI~dL~~if~DL~~lVvdQGtvvDRI 251 (305)
T KOG0809|consen 226 SIYDLNQIFKDLSALVVDQGTVVDRI 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhe
Confidence 99999999999999999999999997
No 4
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.42 E-value=3.8e-13 Score=91.10 Aligned_cols=53 Identities=57% Similarity=0.877 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhh
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ 53 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~ 53 (102)
|.++|.+|+.+|..|+++||.+++|+++|++|++||+|+++++++|++++|++
T Consensus 97 f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 97 FVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHcCChhhhcC
Confidence 78999999999999999999999999999999999999999999998888875
No 5
>KOG0811|consensus
Probab=99.39 E-value=2e-12 Score=96.16 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 56 AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 56 ~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
....+..+++|...|.+||..|.|||+||+|||.||++||++||+|
T Consensus 168 ~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsI 213 (269)
T KOG0811|consen 168 LEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSI 213 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Confidence 4457889999999999999999999999999999999999999987
No 6
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.05 E-value=3.1e-09 Score=79.06 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 60 LADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 60 l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
...+.+|..+|.+|.++|.||+++|.||+.+|.+||+.||||
T Consensus 187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrI 228 (283)
T COG5325 187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRI 228 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 344889999999999999999999999999999999999997
No 7
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.05 E-value=2.1e-10 Score=66.16 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325 64 EARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN 102 (102)
Q Consensus 64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~~ 102 (102)
++|++++..|+++|.+|++||.||+.+|.+||++||+|.
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~ 40 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIE 40 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999873
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=98.94 E-value=1.5e-09 Score=63.78 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 65 ARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
+|+.+|..|+++|.+|++||.||+.+|.+||++||+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i 37 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRI 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHH
Confidence 5899999999999999999999999999999999986
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.90 E-value=3.8e-09 Score=61.71 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
....+.+|+.+|..|+++|.+|+.||.||+.+|++||++||++
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i 45 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRI 45 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999986
No 10
>KOG0812|consensus
Probab=98.42 E-value=4.4e-07 Score=68.07 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
....+++|.+.+..||.+|.||-+||..||+||.+|||+|.||
T Consensus 218 s~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RI 260 (311)
T KOG0812|consen 218 SDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRI 260 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999876
No 11
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=89.99 E-value=0.82 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC
Q psy15325 13 TDYRERCKGRIQRQLEITGRTTTNEELEAMLDT 45 (102)
Q Consensus 13 ~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~ 45 (102)
.+||+++.+++... -|++|+.++.++++.
T Consensus 12 tEyKKrL~e~l~~k----~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 12 TEYKKRLAERLRAK----LPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHHHHH-----TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCCCHHHHHHHHHH
Confidence 46777777776555 489999999999864
No 12
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=75.83 E-value=8.1 Score=21.40 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Q psy15325 72 KLENSIRELHDMFMDMAMLVENQ 94 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla~LV~~Q 94 (102)
.|-+.|.+|++++.+|-.++.+|
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q 27 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQ 27 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688899999999999888877
No 13
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=74.64 E-value=38 Score=26.26 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAM 42 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~ 42 (102)
|..+..++-+++..|+.....-+...++-.|- +|-.|++++
T Consensus 254 fak~~G~lvna~m~lr~~~qe~~e~~L~~Lnl-PTRsElDe~ 294 (320)
T TIGR01834 254 NAKVHGKFINALMRLRIQQQEIVEALLKMLNL-PTRSELDEA 294 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHH
Confidence 44556666677777777777777666665553 555555553
No 14
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=68.89 E-value=40 Score=24.14 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEA 41 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~ 41 (102)
|..+|..+-.+...|.+.....+++++.-++- +|-+++..
T Consensus 37 FSa~IG~vLd~yL~yQKafnE~MekYLe~lNl-PSr~Diar 76 (189)
T TIGR02132 37 FSALMGNVLDLNLFYQKALNDTTGNYLEQVNV-PTKEDIAN 76 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHH
Confidence 56777888888888888888888888776553 34444443
No 15
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=60.72 E-value=71 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy15325 2 LLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEA 41 (102)
Q Consensus 2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~ 41 (102)
..+..++-++...|+.....-+...++..+- +|-.|+++
T Consensus 238 ~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~l-PTr~evd~ 276 (293)
T PF09712_consen 238 AQAYGQLVNALMDLRKQQQEVVEEYLRSLNL-PTRSEVDE 276 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHH
Confidence 3444455555555555555555555554442 34444443
No 16
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.24 E-value=46 Score=21.80 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCC-----cchhhhhHHHHHHHHHHHHH----HHHHH
Q psy15325 2 LLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGN-----PAVFTQGQAKQTLADIEARH----ADIIK 72 (102)
Q Consensus 2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~-----~~~f~~~~~~~~l~~i~~R~----~eI~~ 72 (102)
...+..|+..|..+..-...+-.-.........+-+|++.+=+++. +.+|.......+..++..|. .+|..
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~ 89 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRT 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889988888776665553322222222344555555422221 12344332233334444443 45666
Q ss_pred HHHhHHHHHHHHHHH
Q psy15325 73 LENSIRELHDMFMDM 87 (102)
Q Consensus 73 lE~si~eL~qlF~Dl 87 (102)
||+....|..=+.++
T Consensus 90 lekq~~~l~~~l~e~ 104 (121)
T PRK09343 90 LEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666666555544
No 17
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=57.65 E-value=37 Score=19.99 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15325 64 EARHADIIKLENSIRELHDMFMDMAMLV 91 (102)
Q Consensus 64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV 91 (102)
.+|+..|..++..|.|..++...|-.-|
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999887644
No 18
>PRK04325 hypothetical protein; Provisional
Probab=56.62 E-value=37 Score=20.45 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=14.5
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Q psy15325 58 QTLADIEARH-ADIIKLENSIRELHDMFMDM 87 (102)
Q Consensus 58 ~~l~~i~~R~-~eI~~lE~si~eL~qlF~Dl 87 (102)
..|+++-.+. ++|.+|.+.+.-|.+=..++
T Consensus 26 e~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 26 DGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344433332 45566666555555544443
No 19
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.54 E-value=31 Score=21.14 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15325 63 IEARHADIIKLENSIRELHDMFMDMAMLV 91 (102)
Q Consensus 63 i~~R~~eI~~lE~si~eL~qlF~Dla~LV 91 (102)
+.++..+|..||..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999988766
No 20
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.13 E-value=46 Score=19.61 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q psy15325 65 ARHADIIKLENSIRELHDMFMDMA 88 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF~Dla 88 (102)
.-.+.|.+|++.+..|.+-..++.
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334556666666666665555543
No 21
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.18 E-value=62 Score=20.59 Aligned_cols=87 Identities=10% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCC-----cchhhhhHHHHHHHHHHHHH----HHHHH
Q psy15325 2 LLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGN-----PAVFTQGQAKQTLADIEARH----ADIIK 72 (102)
Q Consensus 2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~-----~~~f~~~~~~~~l~~i~~R~----~eI~~ 72 (102)
...+..|+..|.....-...+-.-...+-....+.++++.+=+++. +.+|.......+..++..|. ..|..
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~ 85 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877665544433222222122233444444322211 12343333344445555554 45566
Q ss_pred HHHhHHHHHHHHHHHH
Q psy15325 73 LENSIRELHDMFMDMA 88 (102)
Q Consensus 73 lE~si~eL~qlF~Dla 88 (102)
|++.+..|..=|.++.
T Consensus 86 lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 86 LQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766666554
No 22
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=47.93 E-value=27 Score=22.15 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15325 55 QAKQTLADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 55 ~~~~~l~~i~~R~~eI~~lE~si~eL~ 81 (102)
..+..+.+|...|..|..|+|+|..|-
T Consensus 60 ~~~di~~eV~kTh~aIq~LdKtIS~LE 86 (95)
T PF13334_consen 60 DQRDIMGEVSKTHEAIQSLDKTISSLE 86 (95)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998875
No 23
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=47.35 E-value=60 Score=19.29 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15325 60 LADIEARHADIIKLENSIRELHDMFMDMAMLVE 92 (102)
Q Consensus 60 l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~ 92 (102)
+.+.-.-.++|..++.++.+|..+..++...+.
T Consensus 50 Y~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 50 YRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555443
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.35 E-value=50 Score=21.84 Aligned_cols=31 Identities=13% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15325 57 KQTLADIEARHADIIKLENSIRELHDMFMDM 87 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dl 87 (102)
...|..+=++..++..|..+|.||.+||.+.
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677788888999999999999864
No 25
>KOG3894|consensus
Probab=43.99 E-value=1e+02 Score=23.85 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 57 KQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
+..+....+=-.++++||+.|.|+..|=.-++.-|-+|..-||.|
T Consensus 221 ~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I 265 (316)
T KOG3894|consen 221 QRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLI 265 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666678999999999999999999999999999888754
No 26
>PRK00295 hypothetical protein; Provisional
Probab=43.94 E-value=68 Score=18.94 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=15.4
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHH
Q psy15325 58 QTLADIEARH-ADIIKLENSIRELHDMFMDM 87 (102)
Q Consensus 58 ~~l~~i~~R~-~eI~~lE~si~eL~qlF~Dl 87 (102)
..|+++-.+. ++|..|++.+..|.+=+.++
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444333 45666666666665544443
No 27
>KOG0028|consensus
Probab=43.73 E-value=28 Score=24.60 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhC
Q psy15325 23 IQRQLEITGRTTTNEELEAMLDT 45 (102)
Q Consensus 23 ~~rq~~i~~~~~tdeei~~~i~~ 45 (102)
++|-++=.||++||+|+.+||++
T Consensus 128 lkrvakeLgenltD~El~eMIeE 150 (172)
T KOG0028|consen 128 LKRVAKELGENLTDEELMEMIEE 150 (172)
T ss_pred HHHHHHHhCccccHHHHHHHHHH
Confidence 34455666999999999999974
No 28
>PRK13676 hypothetical protein; Provisional
Probab=41.52 E-value=92 Score=19.81 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy15325 4 YWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAM 42 (102)
Q Consensus 4 ~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~ 42 (102)
++.+|+..|..+..+. ..|..+++++..++
T Consensus 41 li~~F~~~q~~~~~~q---------~~g~~~~~e~~~~l 70 (114)
T PRK13676 41 LFDEFRALQLEIQQKQ---------MTGQEITEEEQQKA 70 (114)
T ss_pred HHHHHHHHHHHHHHHH---------HcCCCCCHHHHHHH
Confidence 4555555555554322 33666776665554
No 29
>KOG0031|consensus
Probab=41.05 E-value=49 Score=23.33 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhCCC
Q psy15325 20 KGRIQRQLEITGRTTTNEELEAMLDTGN 47 (102)
Q Consensus 20 k~~~~rq~~i~~~~~tdeei~~~i~~~~ 47 (102)
|.-++--+..+|..+++++|+.|+.++.
T Consensus 51 keDL~d~~aSlGk~~~d~elDaM~~Ea~ 78 (171)
T KOG0031|consen 51 KEDLRDMLASLGKIASDEELDAMMKEAP 78 (171)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 3444445667788899999999998753
No 30
>KOG3046|consensus
Probab=40.81 E-value=53 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.505 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15325 66 RHADIIKLENSIRELHDMFMDMAMLVE 92 (102)
Q Consensus 66 R~~eI~~lE~si~eL~qlF~Dla~LV~ 92 (102)
=..++.+|+.++.+.-+.|.+|+.+|.
T Consensus 10 ~~ekl~~l~~~le~~~e~~~~Lgl~vs 36 (147)
T KOG3046|consen 10 MQEKLAQLENSLEKFLENFRQLGLIVS 36 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 346788999999999999999999987
No 31
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=39.27 E-value=46 Score=18.12 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy15325 65 ARHADIIKLENSIRELHDMF 84 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF 84 (102)
.|..++..|+.++.||..=+
T Consensus 19 ~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 19 RRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp T-HHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 68899999999999998644
No 32
>KOG3202|consensus
Probab=38.76 E-value=96 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 61 ADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 61 ~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
..+++--..+-.|+++|.-++.+=.-|+.=++.||.+||+-
T Consensus 145 qm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl 185 (235)
T KOG3202|consen 145 QMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDL 185 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44556667788899999999999999999999999999963
No 33
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.13 E-value=89 Score=18.64 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q psy15325 57 KQTLADIEARH-ADIIKLENSIRELHDMFMD 86 (102)
Q Consensus 57 ~~~l~~i~~R~-~eI~~lE~si~eL~qlF~D 86 (102)
-..|+++-.+. ++|..|.+.+.-|.+=+.+
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444443 3555666555555543433
No 34
>KOG3478|consensus
Probab=36.98 E-value=1.3e+02 Score=20.03 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCc-----chhhhh---HHHHHH-HHHHHHHHHHHH
Q psy15325 2 LLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNP-----AVFTQG---QAKQTL-ADIEARHADIIK 72 (102)
Q Consensus 2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~-----~~f~~~---~~~~~l-~~i~~R~~eI~~ 72 (102)
.+..+.|++.|.+.-+.+..|-+--........--+|++-+-.+... .++... .++..+ .-+.=-..+|.+
T Consensus 8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr 87 (120)
T KOG3478|consen 8 EEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKR 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45678999999988877777654333332222333455544322221 122222 333332 122223578899
Q ss_pred HHHhHHHHHHHHHHH
Q psy15325 73 LENSIRELHDMFMDM 87 (102)
Q Consensus 73 lE~si~eL~qlF~Dl 87 (102)
+|.+|.++..=|...
T Consensus 88 ~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 88 LENQIRDSQEEFEKQ 102 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887665543
No 35
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=34.87 E-value=94 Score=17.97 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15325 63 IEARHADIIKLENSIRELHDMFMDMA 88 (102)
Q Consensus 63 i~~R~~eI~~lE~si~eL~qlF~Dla 88 (102)
.+...+.|.+||..+.-|++-..-|+
T Consensus 24 c~~~~~~i~RLE~H~ETlRk~mv~L~ 49 (57)
T PF02346_consen 24 CKENSEAIKRLEHHIETLRKYMVILA 49 (57)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666555544
No 36
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.27 E-value=95 Score=17.86 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15325 61 ADIEARHADIIKLENSIRELHDMFM 85 (102)
Q Consensus 61 ~~i~~R~~eI~~lE~si~eL~qlF~ 85 (102)
++.++=.++|.+|+.++.+|-.||-
T Consensus 21 ~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667777777777765554
No 37
>PRK00736 hypothetical protein; Provisional
Probab=34.07 E-value=1e+02 Score=18.15 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=14.9
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q psy15325 58 QTLADIEARH-ADIIKLENSIRELHDMFMD 86 (102)
Q Consensus 58 ~~l~~i~~R~-~eI~~lE~si~eL~qlF~D 86 (102)
..|+++-.+. ++|-.|.+.+.-|.+=+.+
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 3566666666665554444
No 38
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.59 E-value=1.3e+02 Score=19.64 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHh
Q psy15325 8 YNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLD 44 (102)
Q Consensus 8 f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~ 44 (102)
|.+--.+|++.+.+.....+..-=..+|++|.+.+.+
T Consensus 64 y~~Q~k~Ye~a~~~~~~~~lqkRle~l~~eE~~~L~~ 100 (104)
T PF11460_consen 64 YMQQRKDYEEAVDQLTNEELQKRLEELSPEELEALQA 100 (104)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 4455556666652222222211113688888877754
No 39
>PRK02119 hypothetical protein; Provisional
Probab=32.51 E-value=1.1e+02 Score=18.23 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=14.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q psy15325 57 KQTLADIEARH-ADIIKLENSIRELHDMFMD 86 (102)
Q Consensus 57 ~~~l~~i~~R~-~eI~~lE~si~eL~qlF~D 86 (102)
-..|+++-.+. ++|..|.+.+.-|.+=+.+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444433 3555566555555554444
No 40
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=32.14 E-value=1.3e+02 Score=18.62 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15325 67 HADIIKLENSIRELHDMFMDMAMLVE 92 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~LV~ 92 (102)
+..+...-..=.+|.+|+.++...+.
T Consensus 77 ~p~v~~y~~ae~~~~~ll~~i~~~I~ 102 (108)
T PF06133_consen 77 NPVVKEYLQAEQALQDLLQDINQIIS 102 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666555443
No 41
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.65 E-value=1.4e+02 Score=18.68 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCC-----cchhhhhHHHHHHHHHHHH----HHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGN-----PAVFTQGQAKQTLADIEAR----HADII 71 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~-----~~~f~~~~~~~~l~~i~~R----~~eI~ 71 (102)
|...+..|+..+..+..-...+-.=..........-+++..+=+++. +.+|.......+...+..| ..+|.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888887765554442111111111111122222111111 1234332223333333333 45567
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy15325 72 KLENSIRELHDMFMDMAM 89 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla~ 89 (102)
+|++++.+|..-|.++..
T Consensus 81 ~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 81 RLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888777654
No 42
>PRK04406 hypothetical protein; Provisional
Probab=29.27 E-value=1.4e+02 Score=18.06 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Q psy15325 58 QTLADIEARH-ADIIKLENSIRELHDMFMD 86 (102)
Q Consensus 58 ~~l~~i~~R~-~eI~~lE~si~eL~qlF~D 86 (102)
..|+++-.+. ++|..|.+.+.-|.+=+.+
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443333 4566666665555544433
No 43
>KOG3065|consensus
Probab=28.83 E-value=87 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325 66 RHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN 102 (102)
Q Consensus 66 R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~~ 102 (102)
=...+.+|-.-+..|..|=.||+.=|+.|.+.||+|+
T Consensus 216 iD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~ 252 (273)
T KOG3065|consen 216 IDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIE 252 (273)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHH
Confidence 4466777778888888888999999999999999984
No 44
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=28.53 E-value=68 Score=21.96 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhC
Q psy15325 20 KGRIQRQLEITGRTTTNEELEAMLDT 45 (102)
Q Consensus 20 k~~~~rq~~i~~~~~tdeei~~~i~~ 45 (102)
.-++++.+..-|.-+||||++.|+-+
T Consensus 73 ~~~~~~eid~RNrpLTDEELD~mLPs 98 (144)
T PF08920_consen 73 AMRWEKEIDERNRPLTDEELDAMLPS 98 (144)
T ss_dssp HHHHHHHHHHCTS-S-HHHHHHTS--
T ss_pred hhccccchhhccCcCCHHHHHHhCCc
Confidence 34455555555777999999999964
No 45
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=27.05 E-value=86 Score=21.04 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q psy15325 67 HADIIKLENSIRELHDMFMDMAML 90 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~L 90 (102)
|-=+.+||+-+.+|-|+-.||-.-
T Consensus 97 hvflEkLE~EvreLEQlV~DLE~W 120 (135)
T PF15466_consen 97 HVFLEKLEKEVRELEQLVRDLEEW 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667888888888888887543
No 46
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=26.01 E-value=1.5e+02 Score=23.61 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy15325 67 HADIIKLENSIRELHDMFMDMAMLVENQD 95 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~LV~~QG 95 (102)
..++..||.--.|||+||.+.+..|.+-+
T Consensus 46 ~~e~~~l~~at~eLh~m~~~a~~~v~~~~ 74 (397)
T PHA02117 46 QAEQDELEGAANELHAMCGHALDWMFSYP 74 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 36778899999999999999999998766
No 47
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=25.81 E-value=1.8e+02 Score=18.31 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=29.9
Q ss_pred cCCCCHHHHHHHHhCCCcchhhhh----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15325 31 GRTTTNEELEAMLDTGNPAVFTQG----QAKQTLADIEARHADIIKLENSIRELHDMFMDMA 88 (102)
Q Consensus 31 ~~~~tdeei~~~i~~~~~~~f~~~----~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla 88 (102)
+++.|.+||-.++. .|..- ..--...++.++++.-+++-.|..|=.+||.+..
T Consensus 8 d~dWsteEii~Vi~-----F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe 64 (88)
T PF05256_consen 8 DPDWSTEEIIDVIN-----FFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFE 64 (88)
T ss_dssp -----HHHHHHHHH-----HHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-----HHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 56788888766653 12111 0111245677999999999999999999999864
No 48
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=25.42 E-value=3.9e+02 Score=23.43 Aligned_cols=93 Identities=16% Similarity=0.292 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-------CCCHHHHHHHHh-------CCCcchhhhhHHHHHHHHHHHHH
Q psy15325 3 LYWREYNRTQTDYRERCKGRIQRQLEIT-GR-------TTTNEELEAMLD-------TGNPAVFTQGQAKQTLADIEARH 67 (102)
Q Consensus 3 ~~~~~f~~~Q~~y~~~~k~~~~rq~~i~-~~-------~~tdeei~~~i~-------~~~~~~f~~~~~~~~l~~i~~R~ 67 (102)
.+|.+.+.+-.+|-..+-.+..+.-.-. .| .++..+++.|++ +|... .++..|+++++=-
T Consensus 496 rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~-----~A~q~L~qlq~mm 570 (820)
T PF13779_consen 496 RLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMD-----EARQLLEQLQQMM 570 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHH
Confidence 5788999999999999888887764321 11 245666666654 34321 2233333222222
Q ss_pred HHHHHH---HHhHHHHHHHHHHHHHHHHHhhhhhhc
Q psy15325 68 ADIIKL---ENSIRELHDMFMDMAMLVENQDDRGNH 100 (102)
Q Consensus 68 ~eI~~l---E~si~eL~qlF~Dla~LV~~QGe~id~ 100 (102)
+.++.= ...-.+-.+.+.+|+.|+..|..+.|.
T Consensus 571 enmq~~~~q~~~~~~~~q~m~~L~dl~r~Qq~L~D~ 606 (820)
T PF13779_consen 571 ENMQNAQPQQQQQQEMQQAMEELGDLLRRQQQLMDE 606 (820)
T ss_pred HhccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211110 134456667777888888888887764
No 49
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=25.34 E-value=55 Score=19.05 Aligned_cols=21 Identities=33% Similarity=0.718 Sum_probs=17.5
Q ss_pred HhcCCCCHHHHHHHHhCCCcc
Q psy15325 29 ITGRTTTNEELEAMLDTGNPA 49 (102)
Q Consensus 29 i~~~~~tdeei~~~i~~~~~~ 49 (102)
|.+..+|++++..++..|.+.
T Consensus 11 i~gk~lt~~~~~~Ll~~gkT~ 31 (62)
T PF13342_consen 11 IAGKKLTDEEVKELLEKGKTG 31 (62)
T ss_pred EcCCCCCHHHHHHHHHcCCcc
Confidence 567889999999999988654
No 50
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=25.05 E-value=76 Score=19.38 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.0
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy15325 72 KLENSIRELHDMFMDMA 88 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla 88 (102)
.||++|..|.+.|.-++
T Consensus 2 ~le~~~~~l~~aF~~fD 18 (88)
T cd05027 2 ELEKAMVALIDVFHQYS 18 (88)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 58999999999888664
No 51
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=24.57 E-value=3e+02 Score=20.75 Aligned_cols=32 Identities=19% Similarity=0.457 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHH
Q psy15325 57 KQTLADIEARHADIIK---------LENSIRELHDMFMDMA 88 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~---------lE~si~eL~qlF~Dla 88 (102)
...+..+.+||.++.+ |+..+.+|..++..++
T Consensus 61 ~~~l~~i~~~~~~~~~~L~~~~~~~i~~~~~~l~~~l~~~~ 101 (295)
T cd04259 61 HSLFNAIQSRHLNLAEQLEVDADALLANDLAQLQRWLTGIS 101 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 3457777888865553 6667777777776653
No 52
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=24.50 E-value=1.1e+02 Score=18.18 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy15325 15 YRERCKGRIQRQLEITGRTTTNEELEAM 42 (102)
Q Consensus 15 y~~~~k~~~~rq~~i~~~~~tdeei~~~ 42 (102)
.++.+++..+.+-++..|.+++++++++
T Consensus 4 H~e~L~~~~~e~~k~~kp~Lde~~leei 31 (92)
T PF08863_consen 4 HKEALRELIKEQNKVEKPELDEQQLEEI 31 (92)
T ss_pred HHHHHHHHHHHhcccCCCCCcHHHHHHH
Confidence 3455555555566677889999887655
No 53
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.06 E-value=1.4e+02 Score=16.19 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q psy15325 61 ADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 61 ~~i~~R~~eI~~lE~si~eL~ 81 (102)
++|++.-..+++|.+||..+.
T Consensus 18 ~eirett~sl~ninksidq~d 38 (46)
T PF08181_consen 18 NEIRETTDSLRNINKSIDQYD 38 (46)
T ss_pred HHHHHHHHHHHHHHHhHHHHh
Confidence 678888888999999987653
No 54
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=22.53 E-value=1.5e+02 Score=23.60 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhh
Q psy15325 73 LENSIRELHDMFMDMAMLVENQDDRG 98 (102)
Q Consensus 73 lE~si~eL~qlF~Dla~LV~~QGe~i 98 (102)
||..-.|||+||.+++.=|..=++.+
T Consensus 49 ie~at~eLh~Mcle~~e~~i~~d~~l 74 (387)
T COG0754 49 IEEATNELHDMCLELVEDVVKSDELL 74 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhH
Confidence 99999999999999998777655533
No 55
>KOG4403|consensus
Probab=22.32 E-value=2.3e+02 Score=23.30 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCcchhhhh-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15325 46 GNPAVFTQG-QAKQTLADIEARHADIIKLENSIRELHDMFMDM 87 (102)
Q Consensus 46 ~~~~~f~~~-~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dl 87 (102)
|.|..+.|+ .++..++....--..+..-|+|+.||.....+-
T Consensus 229 gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Leka 271 (575)
T KOG4403|consen 229 GCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKA 271 (575)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777 788899999999999999999999988876653
No 56
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=21.94 E-value=1.7e+02 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q psy15325 67 HADIIKLENSIRELHDMFMDMAMLVENQDDRGN 99 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id 99 (102)
..++..|+.--.+||+||.+.+..|..-++.+.
T Consensus 257 ~~~~e~Le~At~eLh~m~l~a~~~vl~dd~ll~ 289 (619)
T PRK10507 257 ESAEQELIKATNELHLMYLHATDKVLKDDNLLA 289 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 467888999999999999999999988776654
No 57
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=21.89 E-value=1.5e+02 Score=18.73 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q psy15325 69 DIIKLENSIRELHDMFMDMAMLV 91 (102)
Q Consensus 69 eI~~lE~si~eL~qlF~Dla~LV 91 (102)
=|++|-..|.-+-+||.||+.-.
T Consensus 50 LIrELN~NI~rVv~lY~dLs~sF 72 (87)
T PF07011_consen 50 LIRELNGNISRVVDLYSDLSSSF 72 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHhHHH
Confidence 47788888888999999997653
No 58
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=21.56 E-value=1.6e+02 Score=16.31 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCC
Q psy15325 15 YRERCKGRIQRQLEITGRTTTNEELEAMLDTG 46 (102)
Q Consensus 15 y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~ 46 (102)
++...+.++...++--.+..+++.|..++..|
T Consensus 22 ~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~ 53 (61)
T PF13232_consen 22 FRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEG 53 (61)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33445666666666544444556788887654
No 59
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.37 E-value=2e+02 Score=18.22 Aligned_cols=18 Identities=28% Similarity=0.542 Sum_probs=11.0
Q ss_pred HHHhcCCCCHHHHHHHHh
Q psy15325 27 LEITGRTTTNEELEAMLD 44 (102)
Q Consensus 27 ~~i~~~~~tdeei~~~i~ 44 (102)
+.-.|-++||++++.+++
T Consensus 81 L~~~gi~~t~~~i~~~IE 98 (108)
T PF09682_consen 81 LKKKGIKVTDEQIEGAIE 98 (108)
T ss_pred HHHcCCCCCHHHHHHHHH
Confidence 333455677777776665
No 60
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=20.88 E-value=3.7e+02 Score=20.19 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHH
Q psy15325 58 QTLADIEARHADI--------------IKLENSIRELHDMFMDMA 88 (102)
Q Consensus 58 ~~l~~i~~R~~eI--------------~~lE~si~eL~qlF~Dla 88 (102)
..+..+.+||.++ ..|...+.+|..++..++
T Consensus 64 ~~l~~i~~~h~~~~~~l~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 108 (298)
T cd04244 64 DFIEILRLRHIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIA 108 (298)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777544 334455555555554433
Done!