Query psy15325
Match_columns 102
No_of_seqs 111 out of 612
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 18:06:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 1.5E-30 5.2E-35 191.4 12.4 101 1-101 127-233 (267)
2 1fio_A SSO1 protein; four heli 99.9 1.7E-27 5.7E-32 166.9 7.2 95 1-95 93-196 (196)
3 2xhe_B Syntaxin1; exocytosis, 99.9 1.8E-26 6.3E-31 169.9 -0.2 101 1-101 147-250 (279)
4 1n7s_B Syntaxin 1A; neuronal s 99.7 4.8E-18 1.6E-22 102.0 3.9 44 58-101 2-45 (68)
5 1jth_B Syntaxin 1A; coiled-coi 99.7 1.2E-17 4.1E-22 102.4 4.9 43 59-101 1-43 (77)
6 3b5n_B Protein SSO1; snare com 99.7 1.4E-17 4.7E-22 100.2 4.9 43 59-101 1-43 (69)
7 1sfc_B Protein (syntaxin 1A), 99.7 1E-17 3.5E-22 104.1 4.3 47 55-101 8-54 (83)
8 3hd7_B Syntaxin-1A; membrane p 99.7 8.4E-17 2.9E-21 104.5 5.2 47 55-101 8-54 (109)
9 1gl2_B Syntaxin 7; membrane pr 99.7 7.8E-17 2.7E-21 95.9 4.0 41 61-101 2-42 (65)
10 2nps_B Syntaxin 13, vesicle-as 99.6 4.6E-16 1.6E-20 93.9 4.3 38 64-101 2-39 (71)
11 3c98_B Syntaxin-1A; protein co 99.4 2.6E-12 9E-17 91.8 10.5 102 1-102 139-246 (279)
12 1s94_A S-syntaxin; three helix 99.0 5.6E-12 1.9E-16 87.3 -3.3 46 1-46 135-180 (180)
13 1n7s_D SNAP-25A; neuronal snar 86.1 0.93 3.2E-05 25.7 3.6 34 68-101 10-43 (66)
14 1gl2_D Syntaxin 8, vesicle tra 84.8 1.2 4E-05 25.2 3.6 34 68-101 9-42 (65)
15 1sfc_D Protein (SNAP-25B), pro 83.6 1.3 4.5E-05 26.6 3.6 35 67-101 28-62 (87)
16 2nps_D Syntaxin-6; vesicle fus 79.8 1.8 6.3E-05 25.6 3.2 35 67-101 18-52 (82)
17 1l4a_D S-SNAP25 fusion protein 78.5 2.2 7.4E-05 25.7 3.3 36 67-102 29-64 (87)
18 3b5n_D Protein transport prote 71.9 5.2 0.00018 22.7 3.6 35 68-102 10-44 (64)
19 1nhl_A Synaptosomal-associated 58.4 15 0.00051 19.9 3.6 25 58-82 18-42 (54)
20 3lqv_P Splicing factor 3B subu 55.7 13 0.00043 19.3 2.8 24 23-46 12-35 (39)
21 1fxk_A Prefoldin; archaeal pro 43.7 49 0.0017 19.6 8.0 87 2-88 4-99 (107)
22 3efg_A Protein SLYX homolog; x 42.0 51 0.0017 19.2 4.7 20 68-87 42-61 (78)
23 2l5g_A GPS2 protein, G protein 38.9 40 0.0014 17.2 3.4 22 65-86 12-37 (38)
24 1yzm_A FYVE-finger-containing 36.9 40 0.0014 18.3 3.1 23 65-87 25-47 (51)
25 3v1a_A Computational design, M 34.5 26 0.0009 18.8 2.0 20 65-84 24-43 (48)
26 1l4a_A Synaptobrevin; snare, s 30.7 72 0.0025 18.4 3.8 18 58-75 33-50 (80)
27 1gl2_A Endobrevin; membrane pr 30.4 73 0.0025 17.6 3.8 25 57-81 26-50 (65)
28 1z0k_B FYVE-finger-containing 30.0 51 0.0017 19.0 2.9 22 65-86 43-64 (69)
29 1n7s_A Vesicle-associated memb 29.0 75 0.0026 17.3 4.3 25 57-81 21-45 (63)
30 1sfc_A VAMP 2, protein (synapt 28.7 92 0.0032 18.7 4.1 25 57-81 47-71 (96)
31 1l4a_C S-SNAP25 fusion protein 28.6 94 0.0032 18.3 6.0 16 86-101 45-60 (83)
32 1z0j_B FYVE-finger-containing 27.9 61 0.0021 18.1 2.9 21 65-85 32-52 (59)
33 2iaz_A Hypothetical protein SP 27.5 1E+02 0.0035 18.4 4.6 27 66-92 79-105 (113)
34 3b5n_A Synaptobrevin homolog 1 27.1 82 0.0028 17.1 4.1 25 57-81 19-43 (61)
35 2oee_A UPF0342 protein YHEA; M 25.5 1.2E+02 0.0039 18.3 4.4 24 68-91 81-104 (117)
36 1n7s_C SNAP-25A; neuronal snar 25.2 1.1E+02 0.0036 17.7 6.0 18 83-100 38-55 (79)
37 2oy9_A UPF0223 protein BH2638; 24.8 79 0.0027 19.5 3.3 53 31-88 10-66 (98)
38 3kqg_A Langerin, C-type lectin 24.3 1.1E+02 0.0039 19.3 4.3 16 68-83 23-38 (182)
39 2qyw_A Vesicle transport throu 23.6 1.3E+02 0.0043 18.1 4.7 29 64-92 45-73 (102)
40 2lw9_A Unconventionnal myosin- 23.3 78 0.0027 17.1 2.6 19 67-85 5-23 (51)
41 2beq_A E2 glycoprotein; viral 23.3 85 0.0029 16.0 3.2 28 72-99 3-30 (38)
42 2oeq_A Protein of unknown func 23.2 1.4E+02 0.0047 18.3 9.3 31 3-42 43-73 (122)
43 1vcs_A Vesicle transport throu 23.1 1.2E+02 0.0043 18.1 4.0 28 64-91 34-61 (102)
44 3ff5_A PEX14P, peroxisomal bio 23.0 80 0.0027 17.2 2.8 17 28-44 36-52 (54)
45 2yfv_C SCM3, KLLA0F05115P; cel 23.0 97 0.0033 17.5 3.1 9 91-99 48-56 (63)
46 3rm1_A Protein S100-B; alpha-h 21.8 79 0.0027 17.8 2.8 17 72-88 3-19 (92)
47 1o3x_A ADP-ribosylation factor 21.3 1.7E+02 0.0059 18.8 4.9 47 39-85 13-68 (140)
48 1naf_A ADP-ribosylation factor 21.2 1.8E+02 0.0063 19.1 6.8 47 39-85 22-77 (158)
49 3zzp_A TS9, ribosomal protein 21.1 33 0.0011 19.9 0.9 16 29-44 51-66 (77)
50 2nps_A VAMP-4, vesicle-associa 20.4 90 0.0031 17.6 2.8 26 56-81 24-49 (74)
51 3nmd_A CGMP dependent protein 20.2 1.4E+02 0.0047 17.3 5.2 33 58-90 30-62 (72)
52 3b5n_C Protein transport prote 20.2 33 0.0011 19.7 0.8 12 90-101 34-45 (70)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.97 E-value=1.5e-30 Score=191.38 Aligned_cols=101 Identities=70% Similarity=1.054 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhhh------HHHHHHHHHHHHHHHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------QAKQTLADIEARHADIIKLE 74 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~~------~~~~~l~~i~~R~~eI~~lE 74 (102)
|.++|.+|+.+|..|+++||.+++||++|+||++|+++++.++++|++++|+++ .++.+|.+|++||.+|.+||
T Consensus 127 f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie 206 (267)
T 1dn1_B 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLE 206 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999876 67889999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 75 NSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 75 ~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
++|.|||+||.|||+||++||++||+|
T Consensus 207 ~~i~el~~if~dla~lV~~Qg~~id~I 233 (267)
T 1dn1_B 207 NSIRELHDMFMDMAMLVESQGEMIDRI 233 (267)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999987
No 2
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.94 E-value=1.7e-27 Score=166.88 Aligned_cols=95 Identities=37% Similarity=0.627 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhC-CCcchhhhh--------HHHHHHHHHHHHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDT-GNPAVFTQG--------QAKQTLADIEARHADII 71 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~-~~~~~f~~~--------~~~~~l~~i~~R~~eI~ 71 (102)
|.++|..|+.+|..|+++||.+++|++++++|++++++++.++++ |++++|+++ .++.++++|++||++|+
T Consensus 93 f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~eI~ 172 (196)
T 1fio_A 93 FLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELL 172 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999875 466788765 36789999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhh
Q psy15325 72 KLENSIRELHDMFMDMAMLVENQD 95 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla~LV~~QG 95 (102)
+||+||.|||+||+|||+||++||
T Consensus 173 ~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 173 KLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998
No 3
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.91 E-value=1.8e-26 Score=169.93 Aligned_cols=101 Identities=29% Similarity=0.513 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhhh---HHHHHHHHHHHHHHHHHHHHHhH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG---QAKQTLADIEARHADIIKLENSI 77 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~~---~~~~~l~~i~~R~~eI~~lE~si 77 (102)
|.++|..|+.+|..|++++|.++.|++.+++|.+++++++.++++|++.+|++. .++.++++|++||++|.+||++|
T Consensus 147 f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i 226 (279)
T 2xhe_B 147 FVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSL 226 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-----------------CTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999998888888753 56778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 78 RELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 78 ~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
.||++||.|||+||++||++||+|
T Consensus 227 ~el~~if~dla~lV~~Qg~~id~I 250 (279)
T 2xhe_B 227 LELHEMFTDMSTLVASQGEMIDRI 250 (279)
T ss_dssp HHHHHHHHHHHTTTTTSCSSTTCH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999987
No 4
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.71 E-value=4.8e-18 Score=101.96 Aligned_cols=44 Identities=66% Similarity=0.951 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 58 QTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 58 ~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
++|+++++||++|.+||++|.||++||.|||.||++||++||+|
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~I 45 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 45 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46899999999999999999999999999999999999999987
No 5
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.70 E-value=1.2e-17 Score=102.36 Aligned_cols=43 Identities=67% Similarity=0.971 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
+|+++++||++|.+||++|.||++||.|||+||++||++||+|
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I 43 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 43 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4789999999999999999999999999999999999999987
No 6
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.70 E-value=1.4e-17 Score=100.24 Aligned_cols=43 Identities=40% Similarity=0.625 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 59 ~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
+|+++++||.+|.+||++|.||++||.|||.||++||++||+|
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I 43 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVI 43 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4789999999999999999999999999999999999999987
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.70 E-value=1e-17 Score=104.09 Aligned_cols=47 Identities=66% Similarity=0.925 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 55 ~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
.++.+++++++||++|.+||++|.||++||.|||+||++||++||+|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I 54 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 54 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46778999999999999999999999999999999999999999987
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.66 E-value=8.4e-17 Score=104.51 Aligned_cols=47 Identities=66% Similarity=0.925 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 55 ~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
.++++|+++++||++|.+||++|.|||+||.|||+||++||++||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~I 54 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 54 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57889999999999999999999999999999999999999999986
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.65 E-value=7.8e-17 Score=95.91 Aligned_cols=41 Identities=24% Similarity=0.501 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 61 ADIEARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 61 ~~i~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
+.+++||++|.+||++|.||++||.|||.||++||++||+|
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~I 42 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSI 42 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999987
No 10
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.61 E-value=4.6e-16 Score=93.94 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 64 EARHADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
++||.+|.+||++|.||++||.|||.||++||++||+|
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I 39 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSI 39 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 48999999999999999999999999999999999987
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.39 E-value=2.6e-12 Score=91.84 Aligned_cols=102 Identities=70% Similarity=1.047 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCcchhhhh------HHHHHHHHHHHHHHHHHHHH
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQG------QAKQTLADIEARHADIIKLE 74 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~~~f~~~------~~~~~l~~i~~R~~eI~~lE 74 (102)
|..++.+|...+..|...++..+.+.+..+++.+++.+.......+.+..+... .....+..+.+|+..|..|+
T Consensus 139 ~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~I~ 218 (279)
T 3c98_B 139 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLE 218 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTTTSCSCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999988775554444433332221 55777899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325 75 NSIRELHDMFMDMAMLVENQDDRGNHNN 102 (102)
Q Consensus 75 ~si~eL~qlF~Dla~LV~~QGe~id~~~ 102 (102)
.+|.+|+++|.|||.+|++||+++|+|+
T Consensus 219 ~~i~ei~~~~~~ia~~v~eQ~~~~~~I~ 246 (279)
T 3c98_B 219 NSIRELHDMFMDMAMLVESQGEMIDRIE 246 (279)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999873
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.03 E-value=5.6e-12 Score=87.28 Aligned_cols=46 Identities=67% Similarity=1.078 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCC
Q psy15325 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG 46 (102)
Q Consensus 1 F~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~ 46 (102)
|.++|..||.+|..|+++||.+++||+.|+||++|+++|+++|++|
T Consensus 135 f~~~m~~yq~~q~~y~~~~K~~i~Rq~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 135 FVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp HHHHHHHHHHHHHSCTTCCCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCc
Confidence 7899999999999999999999999999999999999999999876
No 13
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=86.12 E-value=0.93 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=31.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 68 ADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 68 ~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
..+-.|..++..|+.|-.+|+.=|..|..+||++
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l 43 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRI 43 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999976
No 14
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.85 E-value=1.2 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 68 ADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 68 ~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
..+-.|..++..|+.|-.+|+.=|..|..+||++
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l 42 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 42 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999975
No 15
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=83.58 E-value=1.3 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 67 HADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
-..+-.|...+..|+.|-.+|+.=|..|.++||++
T Consensus 28 D~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i 62 (87)
T 1sfc_D 28 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRI 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999986
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=79.76 E-value=1.8 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy15325 67 HADIIKLENSIRELHDMFMDMAMLVENQDDRGNHN 101 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~ 101 (102)
-..+-.|..+|..|+.|-.+|+.=|..|.++||++
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l 52 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDF 52 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999975
No 17
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=78.46 E-value=2.2 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325 67 HADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN 102 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~~ 102 (102)
...+-.|...+..|+.|=.+|+.=|+.|.++||+++
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~ 64 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQ 64 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999863
No 18
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=71.89 E-value=5.2 Score=22.72 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy15325 68 ADIIKLENSIRELHDMFMDMAMLVENQDDRGNHNN 102 (102)
Q Consensus 68 ~eI~~lE~si~eL~qlF~Dla~LV~~QGe~id~~~ 102 (102)
..+-+|...+.-|+.|=.+|+.=|..|-++||+|+
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~ 44 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999874
No 19
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=58.37 E-value=15 Score=19.90 Aligned_cols=25 Identities=8% Similarity=0.428 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q psy15325 58 QTLADIEARHADIIKLENSIRELHD 82 (102)
Q Consensus 58 ~~l~~i~~R~~eI~~lE~si~eL~q 82 (102)
..+.++....+.|.++++.+.+++.
T Consensus 18 ~Tl~~L~~QgEql~r~~~~ld~i~~ 42 (54)
T 1nhl_A 18 KTITMLDEQKEQLNRIEEGLDQINK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhHHHHHhHHHHHHh
Confidence 3444455555555556655555554
No 20
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=55.66 E-value=13 Score=19.28 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhCC
Q psy15325 23 IQRQLEITGRTTTNEELEAMLDTG 46 (102)
Q Consensus 23 ~~rq~~i~~~~~tdeei~~~i~~~ 46 (102)
..|-+.--+..+||||++.++-+|
T Consensus 12 ~~~ei~~RNrpltDEeLD~mLP~G 35 (39)
T 3lqv_P 12 WEREIDERNRPLSDEELDAMFPEG 35 (39)
T ss_dssp HHHHHHHTTCCCCHHHHHHTCCSS
T ss_pred hhccchhhcCCCCHHHHHHhCCCC
Confidence 334444446789999999998643
No 21
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.70 E-value=49 Score=19.57 Aligned_cols=87 Identities=9% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCc-----chhhhhHHHHHHHHHHHH----HHHHHH
Q psy15325 2 LLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNP-----AVFTQGQAKQTLADIEAR----HADIIK 72 (102)
Q Consensus 2 ~~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~i~~~~~-----~~f~~~~~~~~l~~i~~R----~~eI~~ 72 (102)
...+++|+..+..+..-...+-.....+-....+.++++.+=++... .+|.......+...+..| ...|..
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~ 83 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999988888765554433222222222333444433111111 233322222233333333 345667
Q ss_pred HHHhHHHHHHHHHHHH
Q psy15325 73 LENSIRELHDMFMDMA 88 (102)
Q Consensus 73 lE~si~eL~qlF~Dla 88 (102)
|++.+..+..=+.++-
T Consensus 84 le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 84 IERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766665554
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.02 E-value=51 Score=19.22 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy15325 68 ADIIKLENSIRELHDMFMDM 87 (102)
Q Consensus 68 ~eI~~lE~si~eL~qlF~Dl 87 (102)
..|-+|...+.-|.+=+.++
T Consensus 42 ~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 42 LTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555554444433
No 23
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.91 E-value=40 Score=17.16 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHH----HHHHHH
Q psy15325 65 ARHADIIKLENSIREL----HDMFMD 86 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL----~qlF~D 86 (102)
+....|.+++..+..| ||||..
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566666666554 677764
No 24
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=36.89 E-value=40 Score=18.30 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy15325 65 ARHADIIKLENSIRELHDMFMDM 87 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF~Dl 87 (102)
.|..++..|+.++.||.+=+..+
T Consensus 25 ~r~DEV~~Le~NLrEL~~ei~~~ 47 (51)
T 1yzm_A 25 GRMDEVRTLQENLRQLQDEYDQQ 47 (51)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998765543
No 25
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=34.55 E-value=26 Score=18.83 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy15325 65 ARHADIIKLENSIRELHDMF 84 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF 84 (102)
.|..++..|+..+.||.+=+
T Consensus 24 rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 24 GRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHH
Confidence 68899999999999997643
No 26
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.73 E-value=72 Score=18.39 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15325 58 QTLADIEARHADIIKLEN 75 (102)
Q Consensus 58 ~~l~~i~~R~~eI~~lE~ 75 (102)
.....|-+|.+.|-.|+.
T Consensus 33 ~NI~~vLeRGekLd~L~~ 50 (80)
T 1l4a_A 33 VNVDKVLERDSKISELDD 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 334445555555544443
No 27
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.42 E-value=73 Score=17.59 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15325 57 KQTLADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~lE~si~eL~ 81 (102)
......|-+|...|-.|...=..|.
T Consensus 26 ~~NI~~vL~RgekLd~L~~ks~~L~ 50 (65)
T 1gl2_A 26 TQNVERILARGENLDHLRNKTEDLE 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556667777777776666555554
No 28
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=30.00 E-value=51 Score=19.01 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy15325 65 ARHADIIKLENSIRELHDMFMD 86 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF~D 86 (102)
.|..++..||.++.||.+=+..
T Consensus 43 ~r~DEV~tLe~NLrEL~~ei~~ 64 (69)
T 1z0k_B 43 GRMDEVRTLQENLRQLQDEYDQ 64 (69)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999876553
No 29
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=29.03 E-value=75 Score=17.32 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15325 57 KQTLADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~lE~si~eL~ 81 (102)
..+...+-+|...|-.|+..=..|.
T Consensus 21 ~~NI~~vl~RGekLd~L~~ks~~L~ 45 (63)
T 1n7s_A 21 RVNVDKVLERDQKLSELDDRADALQ 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455666666666666665544443
No 30
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.67 E-value=92 Score=18.68 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15325 57 KQTLADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~lE~si~eL~ 81 (102)
..+...|-+|.+.|-.|+.--..|.
T Consensus 47 ~~NI~kvLeRGEkLd~L~dkse~L~ 71 (96)
T 1sfc_A 47 RVNVDKVLERDQKLSELDDRADALQ 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556667777777777766555554
No 31
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=28.60 E-value=94 Score=18.31 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhhhcC
Q psy15325 86 DMAMLVENQDDRGNHN 101 (102)
Q Consensus 86 Dla~LV~~QGe~id~~ 101 (102)
.-+.++..|||.|+|+
T Consensus 45 ~Tl~~L~~QgEQL~ri 60 (83)
T 1l4a_C 45 RTLVMLDEQGEQLDRI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556677777664
No 32
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=27.91 E-value=61 Score=18.12 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy15325 65 ARHADIIKLENSIRELHDMFM 85 (102)
Q Consensus 65 ~R~~eI~~lE~si~eL~qlF~ 85 (102)
.|..++..|+.++.||.+=+.
T Consensus 32 ~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 32 GRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 688999999999999987554
No 33
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=27.50 E-value=1e+02 Score=18.42 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15325 66 RHADIIKLENSIRELHDMFMDMAMLVE 92 (102)
Q Consensus 66 R~~eI~~lE~si~eL~qlF~Dla~LV~ 92 (102)
-+.-|...=..=.+|..|+.++...|.
T Consensus 79 ~~p~v~~y~~Ae~~l~~ll~~I~~~I~ 105 (113)
T 2iaz_A 79 GNSLLSEFFTKQQQLAIYLSDIEKIVF 105 (113)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666665553
No 34
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=27.06 E-value=82 Score=17.10 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15325 57 KQTLADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 57 ~~~l~~i~~R~~eI~~lE~si~eL~ 81 (102)
......+-+|...|-.|...=.+|.
T Consensus 19 ~~NI~~vl~RgekLd~L~~ks~~L~ 43 (61)
T 3b5n_A 19 RDNINKVAERGERLTSIEDKADNLA 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455666667766666665544443
No 35
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=25.52 E-value=1.2e+02 Score=18.31 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q psy15325 68 ADIIKLENSIRELHDMFMDMAMLV 91 (102)
Q Consensus 68 ~eI~~lE~si~eL~qlF~Dla~LV 91 (102)
..|...=..=.+|..|+.++...|
T Consensus 81 p~v~~y~~Ae~~l~~ll~~I~~~I 104 (117)
T 2oee_A 81 EKISQLMEAEQRMSMLIGELNKII 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555444
No 36
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=25.18 E-value=1.1e+02 Score=17.74 Aligned_cols=18 Identities=6% Similarity=0.182 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhhhc
Q psy15325 83 MFMDMAMLVENQDDRGNH 100 (102)
Q Consensus 83 lF~Dla~LV~~QGe~id~ 100 (102)
+=......++.|||.|++
T Consensus 38 ~G~~Tl~~L~~Q~Eql~r 55 (79)
T 1n7s_C 38 AGIRTLVMLDEQGEQLDR 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHH
Confidence 333444445556666554
No 37
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=24.80 E-value=79 Score=19.45 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=36.9
Q ss_pred cCCCCHHHHHHHHhCCCcchhhhh-HH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15325 31 GRTTTNEELEAMLDTGNPAVFTQG-QA---KQTLADIEARHADIIKLENSIRELHDMFMDMA 88 (102)
Q Consensus 31 ~~~~tdeei~~~i~~~~~~~f~~~-~~---~~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla 88 (102)
+++.|.+||-.++. .|..- .+ .-...++..+++.-++|-.|..|=.+||+|..
T Consensus 10 d~dWSteEii~Vi~-----F~~~VE~AYE~GV~r~~ll~~Y~~FK~VVPsKsEEKql~reFE 66 (98)
T 2oy9_A 10 SLDWSTEEVIDVVH-----FFQAIEQAYDQGIAREDLLGKYRRFKEIVPSKSEEKQLFRAYE 66 (98)
T ss_dssp CCCCCHHHHHHHHH-----HHHHHHHHHTTCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-----HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 56788888776653 11110 00 11145677999999999999999999999864
No 38
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.33 E-value=1.1e+02 Score=19.28 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=6.5
Q ss_pred HHHHHHHHhHHHHHHH
Q psy15325 68 ADIIKLENSIRELHDM 83 (102)
Q Consensus 68 ~eI~~lE~si~eL~ql 83 (102)
..+..|+..+..|..+
T Consensus 23 ~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 23 TKIRALQGSLENMSKL 38 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 39
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.65 E-value=1.3e+02 Score=18.13 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15325 64 EARHADIIKLENSIRELHDMFMDMAMLVE 92 (102)
Q Consensus 64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV~ 92 (102)
.+|..-|.++|..+.|..+|...|-.=|-
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999999988888876443
No 40
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=23.27 E-value=78 Score=17.06 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy15325 67 HADIIKLENSIRELHDMFM 85 (102)
Q Consensus 67 ~~eI~~lE~si~eL~qlF~ 85 (102)
-.+|.+||+-|..|...=.
T Consensus 5 ~EEILRLErEIE~Lqrqke 23 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKE 23 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3689999999988876433
No 41
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=23.26 E-value=85 Score=15.97 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q psy15325 72 KLENSIRELHDMFMDMAMLVENQDDRGN 99 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla~LV~~QGe~id 99 (102)
.+-+++.-.+.=+.-+...|.+||..++
T Consensus 3 q~~~g~~tv~~AL~KiQ~VVN~q~~aL~ 30 (38)
T 2beq_A 3 QIQESLTTTSTALGKLQDVVNQNAQALN 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455566666667777777778877664
No 42
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=23.18 E-value=1.4e+02 Score=18.33 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy15325 3 LYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAM 42 (102)
Q Consensus 3 ~~~~~f~~~Q~~y~~~~k~~~~rq~~i~~~~~tdeei~~~ 42 (102)
.++.+|+..|..|.... -.|..++++...++
T Consensus 43 ~li~~F~~~q~~~q~~q---------~~G~~~~~e~~~~l 73 (122)
T 2oeq_A 43 RMFANVRDIQLRLHEKQ---------MRGAAILPDEIEQA 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHH---------HTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HcCCCCCHHHHHHH
Confidence 34566666666655332 33556777665544
No 43
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.14 E-value=1.2e+02 Score=18.14 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15325 64 EARHADIIKLENSIRELHDMFMDMAMLV 91 (102)
Q Consensus 64 ~~R~~eI~~lE~si~eL~qlF~Dla~LV 91 (102)
.+|..-|.++|..+.|..+|...|-.=|
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999998888877644
No 44
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.04 E-value=80 Score=17.25 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=11.5
Q ss_pred HHhcCCCCHHHHHHHHh
Q psy15325 28 EITGRTTTNEELEAMLD 44 (102)
Q Consensus 28 ~i~~~~~tdeei~~~i~ 44 (102)
++-...+|++||+.++.
T Consensus 36 FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 36 FLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 34455788888887763
No 45
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=23.04 E-value=97 Score=17.47 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=6.8
Q ss_pred HHHhhhhhh
Q psy15325 91 VENQDDRGN 99 (102)
Q Consensus 91 V~~QGe~id 99 (102)
|+.||.+||
T Consensus 48 ~edqgD~ID 56 (63)
T 2yfv_C 48 IDNQGDVID 56 (63)
T ss_dssp GGGSSCCBC
T ss_pred ccCCCceee
Confidence 567888876
No 46
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=21.81 E-value=79 Score=17.83 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy15325 72 KLENSIRELHDMFMDMA 88 (102)
Q Consensus 72 ~lE~si~eL~qlF~Dla 88 (102)
.||++|.+|..+|.-+.
T Consensus 3 ~le~~~~~l~~~F~~~D 19 (92)
T 3rm1_A 3 ELEKAVVALIDVFHQYS 19 (92)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 57888888888887543
No 47
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=21.30 E-value=1.7e+02 Score=18.76 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=21.6
Q ss_pred HHHHHhCCCcchhhhh---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15325 39 LEAMLDTGNPAVFTQG---------QAKQTLADIEARHADIIKLENSIRELHDMFM 85 (102)
Q Consensus 39 i~~~i~~~~~~~f~~~---------~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~ 85 (102)
+.++|.+|.|.-++.+ ........+..|..+|-.+..++.=|.+|..
T Consensus 13 L~~Lirs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~ 68 (140)
T 1o3x_A 13 LARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVM 68 (140)
T ss_dssp --------------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667666544433 2233356677777788888888877777754
No 48
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.15 E-value=1.8e+02 Score=19.08 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=31.0
Q ss_pred HHHHHhCCCcchhhhh---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15325 39 LEAMLDTGNPAVFTQG---------QAKQTLADIEARHADIIKLENSIRELHDMFM 85 (102)
Q Consensus 39 i~~~i~~~~~~~f~~~---------~~~~~l~~i~~R~~eI~~lE~si~eL~qlF~ 85 (102)
+.++|.+|.|.-++.+ ........+..|..+|-.+..++.=|.+|..
T Consensus 22 L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~ 77 (158)
T 1naf_A 22 LARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVM 77 (158)
T ss_dssp HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778877655544 1233356666777788888777777777654
No 49
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.11 E-value=33 Score=19.91 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=12.3
Q ss_pred HhcCCCCHHHHHHHHh
Q psy15325 29 ITGRTTTNEELEAMLD 44 (102)
Q Consensus 29 i~~~~~tdeei~~~i~ 44 (102)
|++|+++++++..+++
T Consensus 51 Il~P~l~ee~~~~~ve 66 (77)
T 3zzp_A 51 VLNPNLDQSQLQNEKE 66 (77)
T ss_dssp EECTTCCHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHH
Confidence 3579999988877764
No 50
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=20.43 E-value=90 Score=17.62 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy15325 56 AKQTLADIEARHADIIKLENSIRELH 81 (102)
Q Consensus 56 ~~~~l~~i~~R~~eI~~lE~si~eL~ 81 (102)
.......+-+|.+.|-.|..--.+|.
T Consensus 24 M~~NI~~vL~RgekLd~L~~ks~~L~ 49 (74)
T 2nps_A 24 MQENITKVIERGERLDELQDKSESLS 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45667788888888888877666665
No 51
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.20 E-value=1.4e+02 Score=17.27 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15325 58 QTLADIEARHADIIKLENSIRELHDMFMDMAML 90 (102)
Q Consensus 58 ~~l~~i~~R~~eI~~lE~si~eL~qlF~Dla~L 90 (102)
....+++.|..-|..+|+-|.+.......|-.-
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888887777666443
No 52
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.15 E-value=33 Score=19.67 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=9.3
Q ss_pred HHHHhhhhhhcC
Q psy15325 90 LVENQDDRGNHN 101 (102)
Q Consensus 90 LV~~QGe~id~~ 101 (102)
++..|||.|+|+
T Consensus 34 ~L~~QgEqL~rt 45 (70)
T 3b5n_C 34 MLGHQSEQLNNV 45 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 456799998874
Done!