RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15325
(102 letters)
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Length = 196
Score = 84.3 bits (208), Expect = 5e-22
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 5 WREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ--------GQ 55
++Y ++Y+E K + +RQ I T +E+EA + D G +F+Q G+
Sbjct: 97 IQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGE 156
Query: 56 AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
AK LA+++ARH +++KLE S+ EL +F DM LV Q
Sbjct: 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 79.0 bits (194), Expect = 2e-19
Identities = 70/102 (68%), Positives = 83/102 (81%), Gaps = 6/102 (5%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFT------QG 54
F+ EYN TQ+DYRERCKGRIQRQLEITGRTTT+EELE ML++GNPA+F
Sbjct: 127 FVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS 186
Query: 55 QAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 187 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 76.8 bits (188), Expect = 1e-18
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 5 WREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQ---GQAKQTLA 61
YN Q + + R + RQ + + +++ ++ +++ G +F+ A+ L
Sbjct: 151 MTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLN 210
Query: 62 DIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
+I RH DI +LE S+ ELH+MF DM+ LV +Q +
Sbjct: 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGE 245
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle,
cell juncti cytoplasmic vesicle, membrane,
phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus}
PDB: 3hd9_B 3ipd_B
Length = 109
Score = 59.4 bits (144), Expect = 3e-13
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 53 QGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 6 SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 49
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 55.0 bits (133), Expect = 5e-12
Identities = 29/38 (76%), Positives = 35/38 (92%)
Query: 59 TLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 40
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 55.0 bits (133), Expect = 5e-12
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 60 LADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
LA+++ARH +++KLE S+ EL +F DM LV Q +
Sbjct: 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQE 38
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Length = 83
Score = 54.8 bits (132), Expect = 1e-11
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 53 QGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
+KQ L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 6 SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 49
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 53.5 bits (129), Expect = 3e-11
Identities = 29/37 (78%), Positives = 35/37 (94%)
Query: 60 LADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
L++IE RH++IIKLENSIRELHDMFMDMAMLVE+Q +
Sbjct: 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 38
>1s94_A S-syntaxin; three helix bundle, structural plasticity,
endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP:
a.47.2.1
Length = 180
Score = 52.8 bits (126), Expect = 5e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTG 46
F+ +YN TQ DYR+RCK RI+RQ+EITGRTTTNEELE ML++G
Sbjct: 135 FVEVMSDYNTTQIDYRDRCKARIKRQMEITGRTTTNEELEDMLESG 180
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 49.5 bits (119), Expect = 8e-10
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 61 ADIEARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
+ + R + I +LE I +++++F D+ M++ Q D
Sbjct: 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGD 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle
fusion, snare complex, early endosomal snare complex,
VTI1A, VAMP4, transport protein; 2.50A {Rattus
norvegicus}
Length = 71
Score = 48.0 bits (115), Expect = 4e-09
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 65 ARHADIIKLENSIRELHDMFMDMAMLVENQDD 96
R I +LE I +++ +F D+AM++ +Q D
Sbjct: 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGD 34
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex;
1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A
3lg7_A*
Length = 127
Score = 32.3 bits (73), Expect = 0.010
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 1 FLLYWREYNRTQTDYRERCKGRIQ 24
F+ EYN TQ+DYRERCKGRIQ
Sbjct: 104 FVEVMSEYNATQSDYRERCKGRIQ 127
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Length = 446
Score = 30.3 bits (69), Expect = 0.073
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 34 TTNEELEA--MLDTGNPAVFTQGQAKQTLADIEARHADIIK-------LENSIRELHDMF 84
TN++ + +L N V I R+ +I+ + + ++
Sbjct: 44 RTNKDYKITDLLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDMDIAYYLEKVKKNI 103
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 29.5 bits (67), Expect = 0.13
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 34 TTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIK---LENSIR-ELHDMFMDMAM 89
TN L A+ + G+ + L I I++ N IR E+ + ++ +
Sbjct: 44 ITNL-LVALAEG-----LEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITV 97
Query: 90 LVE 92
L E
Sbjct: 98 LAE 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.16
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 14/97 (14%)
Query: 3 LYWREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQA---KQT 59
+Y + +R D + K + R EL V G K
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-----AKNVLIDGVLGSGKTW 165
Query: 60 LADIEARHADIIKLEN------SIRELHDMFMDMAML 90
+A + + +++ + + ML
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Score = 25.2 bits (54), Expect = 4.8
Identities = 11/114 (9%), Positives = 33/114 (28%), Gaps = 40/114 (35%)
Query: 4 YWREYNRTQ--------------TDYRERCKG--------RIQRQ-LEITGRTTTNEELE 40
W+ N + +YR+ I L + ++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 41 AMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
+++ K +L + + S + +++++ + +EN+
Sbjct: 406 VVVNK---------LHKYSLVE---KQPK-----ESTISIPSIYLELKVKLENE 442
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.20
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 21/43 (48%)
Query: 57 KQTLADIEARHADIIKLENSIRELHDMFMD-----MAM--LVE 92
KQ L KL+ S++ ++ D +A+ +E
Sbjct: 19 KQALK----------KLQASLK----LYADDSAPALAIKATME 47
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 28.4 bits (64), Expect = 0.30
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 32 RTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARH 67
T T++E+ L + + +A I AR
Sbjct: 25 HTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARR 60
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain,
alloste S-adenosylmethionine, lysine, allosteric
effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis
thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Length = 510
Score = 28.1 bits (63), Expect = 0.44
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 35 TNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIK--------LENSIRELHDMFMD 86
T L + + + L+ I+ H +K + + EL +
Sbjct: 69 TTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKG 128
Query: 87 MAMLVE 92
+AM+ E
Sbjct: 129 IAMMKE 134
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid,
anthraniloyl-COA, transferase; HET: BE2; 1.70A
{Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 27.1 bits (61), Expect = 0.88
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 12 QTDYRERCKGRIQRQLEITG-------RTTTNEELEAMLDT 45
Q R Q + G R +N +L ++T
Sbjct: 11 QQMGRGSENLYFQGNPILAGLGFSLPKRQVSNHDLVGRINT 51
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.90A {Aquifex aeolicus}
SCOP: a.7.12.1 PDB: 1t8b_A
Length = 227
Score = 27.2 bits (61), Expect = 0.97
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 71 IKLENSIRELHDMFMDMAMLVENQ 94
+KL + E + + MA LV+
Sbjct: 7 MKLFKELEETKEQVIKMAKLVQEA 30
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 26.3 bits (59), Expect = 1.7
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 7/24 (29%)
Query: 29 ITG-------RTTTNEELEAMLDT 45
I R TN + EA LDT
Sbjct: 4 ILALGAYVPERVMTNADFEAYLDT 27
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme;
1.81A {Pseudomonas aeruginosa}
Length = 331
Score = 25.9 bits (58), Expect = 2.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 35 TNEELEAMLDT 45
+N+ L A LDT
Sbjct: 21 SNDMLAAELDT 31
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 26.3 bits (59), Expect = 2.1
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 68 ADIIKLENS---IRELHDMFMDMAML 90
+D +K E++ ++EL M + + M+
Sbjct: 455 SDTLK-ESAKPAVQELKRMGIKVGMI 479
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 26.3 bits (59), Expect = 2.2
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 68 ADIIKLENS---IRELHDMFMDMAML 90
+D +K E++ ++EL M + + M+
Sbjct: 533 SDTLK-ESAKPAVQELKRMGIKVGMI 557
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 47
Score = 24.5 bits (53), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 22 RIQRQLEITGRTTTNEELEAMLDTG 46
R +R+++ R ++EEL+AM G
Sbjct: 10 RWEREIDERNRPLSDEELDAMFPEG 34
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 26.0 bits (58), Expect = 2.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 15 YRERCKGRIQRQLEITG---RTTTNEELEAMLDTGNPAVFTQG 54
R++ R+ + +TG +T+ E A+L ++T G
Sbjct: 94 VRQQVPARV---VALTGSSGKTSVKEMTAAILSQCGNTLYTAG 133
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 25.9 bits (58), Expect = 2.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 32 RTTTNEELEAMLDT 45
R TN+E+ +D+
Sbjct: 25 RVVTNDEICQHIDS 38
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 25.9 bits (58), Expect = 2.6
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 35 TNEELEAMLDT 45
N E LDT
Sbjct: 18 DNAYFEQFLDT 28
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 26.0 bits (58), Expect = 2.7
Identities = 2/11 (18%), Positives = 3/11 (27%)
Query: 35 TNEELEAMLDT 45
N+ D
Sbjct: 32 DNDYFVERFDA 42
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic
polyketide, biosynthetic engineering, catalytic triad,
transferase; HET: COA; 2.10A {Streptomyces SP} SCOP:
c.95.1.2 c.95.1.2
Length = 339
Score = 25.9 bits (58), Expect = 2.8
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 32 RTTTNEELEAMLDT 45
R +N+E+ +D+
Sbjct: 24 REVSNKEVCTWIDS 37
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 25.5 bits (57), Expect = 3.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 35 TNEELEAMLDT 45
TN +LE ++DT
Sbjct: 18 TNFDLEKIVDT 28
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 25.6 bits (57), Expect = 3.7
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 15 YRERCKGRIQRQLEITG---RTTTNEELEAMLDTGNPAVFTQG 54
Y E+ + +TG +TTT + L +L T TQG
Sbjct: 94 YLEKTTVDV---FAVTGSNGKTTTKDMLAHLLSTRYKTYKTQG 133
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport,
PST, structural genomics, berkeley STRU genomics
center, BSGC; 2.00A {Thermotoga maritima} SCOP:
a.7.12.1
Length = 235
Score = 25.3 bits (56), Expect = 3.7
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 72 KLENSIRELHDMFMDMAMLVENQ 94
L + E + +E
Sbjct: 4 LLNEKVEEFKKGVLKAGWFIEKM 26
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus
faecalis} PDB: 3il5_A* 3il4_A*
Length = 321
Score = 25.5 bits (57), Expect = 3.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 35 TNEELEAMLDT 45
TN +L M+DT
Sbjct: 20 TNHQLSEMMDT 30
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 25.1 bits (56), Expect = 4.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 35 TNEELEAMLDT 45
TN +LE M+DT
Sbjct: 25 TNADLEKMVDT 35
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 25.1 bits (56), Expect = 4.5
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 68 ADIIKLENS---IRELHDMFMDMAML 90
AD I+ S I +L + + ML
Sbjct: 142 ADRIR-PESREAISKLKAIGIKCMML 166
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 25.2 bits (56), Expect = 4.6
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 68 ADIIKLENS---IRELHDMFMDMAML 90
D IK ++ I EL +++ ML
Sbjct: 552 EDPIK-SSTPETILELQQSGIEIVML 576
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein,
structural genomics, PSI-2, PROT structure initiative;
2.40A {Streptococcus pneumoniae}
Length = 216
Score = 24.8 bits (55), Expect = 4.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 72 KLENSIRELHDMFMDMAMLVENQ 94
+ + + EL F+ + LV
Sbjct: 4 QFDLELHELEQSFLGLGQLVLET 26
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 24.7 bits (55), Expect = 5.3
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 68 ADIIKLENS---IRELHDMFMDMAML 90
+D +K E++ ++EL M + + M+
Sbjct: 161 SDTLK-ESAKPAVQELKRMGIKVGMI 185
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH,
transferase; HET: MLC; 1.46A {Escherichia coli} SCOP:
c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A
1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 24.7 bits (55), Expect = 5.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 35 TNEELEAMLDT 45
TN +LE M+DT
Sbjct: 18 TNADLEKMVDT 28
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
palustris}
Length = 365
Score = 24.7 bits (54), Expect = 6.4
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 35 TNEELEAMLDTGNPA 49
+ ++A + G
Sbjct: 72 SGPRIKAQAEAGKAQ 86
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake
regulator, structural genomics, protein structure
initiative, PSI; 2.50A {Geobacillus stearothermophilus}
SCOP: a.7.12.1
Length = 217
Score = 24.5 bits (54), Expect = 7.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 72 KLENSIRELHDMFMDMAMLVENQ 94
+ + LH+ ++M L E
Sbjct: 4 TFADDLASLHNKLIEMGRLTEVA 26
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 24.3 bits (54), Expect = 7.3
Identities = 4/26 (15%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 68 ADIIKLENS---IRELHDMFMDMAML 90
+D+ + N + +L + + + +L
Sbjct: 134 SDVPR-PNLKDYLEKLKNEGLKIIIL 158
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 24.6 bits (53), Expect = 8.2
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 14 DYRERCKGRIQRQLEITGRTTTNEELEAMLDTGNPAVF 51
+ +R RI + ++ E+L + + N +
Sbjct: 404 EIMDRVMSRISLPKYVESEDSSVEDLYSAISANNKVLI 441
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,553,168
Number of extensions: 81216
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 57
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)