RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15325
         (102 letters)



>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 62.8 bits (152), Expect = 3e-14
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 5   WREYNRTQTDYRERCKGRIQRQLEITGRTTTNEELEAML-DTGNPAVFTQ--------GQ 55
            ++Y    ++Y+E  K + +RQ  I     T +E+EA + D G   +F+Q        G+
Sbjct: 97  IQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGE 156

Query: 56  AKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVENQ 94
           AK  LA+++ARH +++KLE S+ EL  +F DM  LV  Q
Sbjct: 157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195


>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 29.4 bits (66), Expect = 0.033
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 5   WREYNRTQTDYRERCKGRI 23
             EYN TQ+DYRERCKGRI
Sbjct: 106 MSEYNATQSDYRERCKGRI 124


>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 25.2 bits (55), Expect = 0.50
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 16/61 (26%)

Query: 22 RIQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIRELH 81
          R++ +L+  G T+ NE+L    +T    +F Q                I+ L+ SI++L 
Sbjct: 7  RLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQ----------------ILTLQQSIKQLK 50

Query: 82 D 82
           
Sbjct: 51 G 51


>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
          synthase, synthetase domain {Escherichia coli [TaxId:
          562]}
          Length = 297

 Score = 24.8 bits (54), Expect = 2.2
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 67 HADIIKLENSIRELHDMFMDMAMLVENQDD 96
           +   +L  +  ELH M++     V   D+
Sbjct: 57 ESAEQELIKATNELHLMYLHATDKVLKDDN 86


>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
           protein TM1585) {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 23.0 bits (49), Expect = 8.9
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23  IQRQLEITGRTTTNEELEAMLDTGNPAVFTQGQAKQTLADIEARHADIIKLENSIREL 80
            +R LE+  +   N+ +  +L  G  ++F       +L +I+   + ++K   SI E+
Sbjct: 98  TRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEI 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,113
Number of extensions: 14256
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 12
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)