Query psy15326
Match_columns 78
No_of_seqs 102 out of 1021
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 18:07:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 99.6 6.6E-15 1.4E-19 82.0 8.0 77 1-77 108-184 (193)
2 KOG0034|consensus 99.6 7.9E-15 1.7E-19 81.5 6.9 73 1-77 112-184 (187)
3 PF13499 EF-hand_7: EF-hand do 99.4 8.3E-13 1.8E-17 62.3 6.5 58 2-66 9-66 (66)
4 COG5126 FRQ1 Ca2+-binding prot 99.3 6.6E-12 1.4E-16 68.2 6.1 59 1-70 100-158 (160)
5 PF13833 EF-hand_8: EF-hand do 99.3 6.6E-11 1.4E-15 53.8 7.0 51 6-67 1-52 (54)
6 cd05022 S-100A13 S-100A13: S-1 99.3 2.4E-11 5.3E-16 60.5 5.5 56 2-67 17-74 (89)
7 KOG0027|consensus 99.2 4.8E-11 1E-15 64.5 6.4 57 1-68 93-149 (151)
8 cd05026 S-100Z S-100Z: S-100Z 99.2 1.8E-10 3.9E-15 57.8 6.6 60 2-68 19-81 (93)
9 cd05027 S-100B S-100B: S-100B 99.2 1.8E-10 3.9E-15 57.3 6.4 60 1-67 16-78 (88)
10 cd05031 S-100A10_like S-100A10 99.1 3.4E-10 7.3E-15 56.9 6.2 60 2-68 17-79 (94)
11 cd05025 S-100A1 S-100A1: S-100 99.1 5.3E-10 1.2E-14 55.9 6.4 60 1-67 17-79 (92)
12 cd05029 S-100A6 S-100A6: S-100 99.1 7.1E-10 1.5E-14 55.2 6.2 58 2-67 19-78 (88)
13 cd00252 SPARC_EC SPARC_EC; ext 99.1 2.9E-10 6.4E-15 59.1 4.8 55 2-71 57-111 (116)
14 KOG0027|consensus 99.1 5.7E-10 1.2E-14 60.3 6.1 57 1-68 16-72 (151)
15 cd00052 EH Eps15 homology doma 99.1 8.6E-10 1.9E-14 51.8 5.9 54 2-68 8-61 (67)
16 cd05023 S-100A11 S-100A11: S-1 99.0 8.1E-10 1.8E-14 55.1 5.0 60 2-67 19-79 (89)
17 cd00051 EFh EF-hand, calcium b 99.0 2.8E-09 6.1E-14 48.6 6.4 54 2-66 9-62 (63)
18 smart00027 EH Eps15 homology d 99.0 3E-09 6.6E-14 53.6 6.5 53 2-67 19-71 (96)
19 cd00213 S-100 S-100: S-100 dom 99.0 3.1E-09 6.7E-14 52.7 5.7 61 2-68 17-79 (88)
20 PTZ00184 calmodulin; Provision 99.0 6.9E-09 1.5E-13 55.2 6.8 55 2-67 93-147 (149)
21 PTZ00183 centrin; Provisional 98.9 3.9E-09 8.4E-14 56.8 5.9 30 40-69 126-155 (158)
22 KOG0038|consensus 98.9 4.5E-09 9.7E-14 56.4 5.7 70 1-76 116-185 (189)
23 PF14658 EF-hand_9: EF-hand do 98.9 2.4E-08 5.1E-13 47.0 6.8 57 1-68 6-64 (66)
24 PF00036 EF-hand_1: EF hand; 98.9 2.9E-09 6.3E-14 42.6 3.1 27 42-68 2-28 (29)
25 PTZ00183 centrin; Provisional 98.8 3.1E-08 6.7E-13 53.3 6.6 55 2-67 26-80 (158)
26 KOG0037|consensus 98.8 2.8E-08 6.1E-13 56.2 6.0 60 2-72 133-192 (221)
27 PTZ00184 calmodulin; Provision 98.8 4E-08 8.8E-13 52.2 6.3 55 2-67 20-74 (149)
28 COG5126 FRQ1 Ca2+-binding prot 98.8 5.3E-08 1.2E-12 53.2 6.0 63 1-67 28-119 (160)
29 KOG0044|consensus 98.7 2.6E-08 5.7E-13 55.9 3.6 56 2-68 73-128 (193)
30 KOG0028|consensus 98.6 1.4E-07 3E-12 51.3 5.5 29 39-67 105-133 (172)
31 cd05024 S-100A10 S-100A10: A s 98.6 6.4E-08 1.4E-12 48.3 3.8 55 7-67 21-75 (91)
32 cd05030 calgranulins Calgranul 98.6 3.8E-07 8.2E-12 45.3 6.5 56 6-67 23-78 (88)
33 PF13202 EF-hand_5: EF hand; P 98.6 1E-07 2.2E-12 36.8 3.2 25 42-66 1-25 (25)
34 KOG0028|consensus 98.6 3.5E-07 7.6E-12 49.8 6.1 57 1-68 114-170 (172)
35 PLN02964 phosphatidylserine de 98.6 2.6E-07 5.6E-12 59.7 6.4 56 2-68 188-243 (644)
36 KOG0031|consensus 98.6 2.5E-07 5.4E-12 50.1 5.0 63 1-67 40-128 (171)
37 KOG0041|consensus 98.5 2.3E-07 4.9E-12 52.3 4.7 55 2-67 108-162 (244)
38 KOG0037|consensus 98.5 7.2E-07 1.6E-11 50.6 5.8 50 1-67 102-151 (221)
39 KOG0030|consensus 98.5 6.9E-07 1.5E-11 47.7 5.4 56 1-68 96-151 (152)
40 PF14788 EF-hand_10: EF hand; 98.4 3.7E-06 8E-11 37.6 5.8 48 9-67 1-48 (51)
41 KOG0377|consensus 98.4 2E-06 4.4E-11 53.6 6.6 59 2-67 556-614 (631)
42 PF13405 EF-hand_6: EF-hand do 98.4 9.6E-07 2.1E-11 35.6 3.2 26 42-67 2-27 (31)
43 KOG0031|consensus 98.3 4.8E-06 1E-10 45.2 6.1 58 1-69 109-166 (171)
44 PF00036 EF-hand_1: EF hand; 98.3 1.1E-06 2.3E-11 35.1 2.6 20 2-21 9-28 (29)
45 PF12763 EF-hand_4: Cytoskelet 98.2 1.2E-05 2.7E-10 41.2 6.6 50 5-67 21-70 (104)
46 KOG0030|consensus 98.1 5.5E-06 1.2E-10 44.3 4.0 56 1-67 19-76 (152)
47 PRK12309 transaldolase/EF-hand 98.1 4.7E-06 1E-10 51.4 4.3 43 1-67 342-384 (391)
48 PF10591 SPARC_Ca_bdg: Secrete 98.1 5.3E-07 1.2E-11 46.8 0.1 51 2-65 63-113 (113)
49 KOG4065|consensus 98.1 3.9E-05 8.5E-10 40.0 6.4 65 1-65 75-142 (144)
50 PLN02964 phosphatidylserine de 97.9 4E-05 8.6E-10 50.0 5.7 55 1-67 151-206 (644)
51 KOG0040|consensus 97.9 2.1E-05 4.5E-10 55.1 4.6 63 1-67 2261-2323(2399)
52 KOG0034|consensus 97.9 3.6E-05 7.8E-10 43.2 4.9 55 3-67 76-131 (187)
53 KOG0036|consensus 97.9 5.2E-05 1.1E-09 47.0 5.6 57 3-70 92-148 (463)
54 KOG4223|consensus 97.9 6.4E-05 1.4E-09 45.1 5.8 55 2-67 86-140 (325)
55 KOG4223|consensus 97.9 3.2E-05 7E-10 46.3 4.5 60 2-67 209-268 (325)
56 KOG0036|consensus 97.9 8.6E-05 1.9E-09 46.0 6.3 60 2-71 23-82 (463)
57 PF13405 EF-hand_6: EF-hand do 97.8 2.8E-05 6E-10 31.2 2.7 19 2-20 9-27 (31)
58 PF13202 EF-hand_5: EF hand; P 97.8 2.5E-05 5.5E-10 30.0 2.3 18 2-19 8-25 (25)
59 smart00054 EFh EF-hand, calciu 97.7 7.1E-05 1.5E-09 28.4 3.1 27 42-68 2-28 (29)
60 PF13499 EF-hand_7: EF-hand do 97.6 0.00012 2.7E-09 34.0 3.3 27 42-68 2-28 (66)
61 KOG4251|consensus 97.5 0.0002 4.4E-09 42.0 3.8 56 2-66 110-166 (362)
62 KOG0038|consensus 97.4 0.00012 2.6E-09 39.7 2.1 56 2-67 80-135 (189)
63 KOG0046|consensus 97.4 0.00064 1.4E-08 43.5 5.2 55 5-67 30-84 (627)
64 KOG3866|consensus 97.1 0.0027 5.9E-08 38.5 5.8 66 1-67 252-323 (442)
65 KOG2643|consensus 97.0 0.0034 7.4E-08 39.5 5.7 52 1-67 294-345 (489)
66 KOG4578|consensus 97.0 0.0011 2.4E-08 40.3 3.5 57 2-68 342-398 (421)
67 KOG2643|consensus 96.9 0.0005 1.1E-08 43.1 1.4 52 2-66 208-259 (489)
68 KOG0377|consensus 96.8 0.0092 2E-07 37.9 6.1 65 2-67 473-574 (631)
69 PF13833 EF-hand_8: EF-hand do 96.8 0.002 4.2E-08 28.8 2.5 20 2-21 34-53 (54)
70 smart00027 EH Eps15 homology d 96.7 0.0048 1E-07 30.9 3.9 30 39-68 9-38 (96)
71 PF05042 Caleosin: Caleosin re 96.7 0.0088 1.9E-07 33.3 5.0 38 38-75 94-131 (174)
72 cd00213 S-100 S-100: S-100 dom 96.6 0.0038 8.3E-08 30.6 3.1 30 39-68 7-38 (88)
73 cd00052 EH Eps15 homology doma 96.6 0.0031 6.7E-08 29.0 2.6 25 43-67 2-26 (67)
74 cd00051 EFh EF-hand, calcium b 96.4 0.0057 1.2E-07 27.0 2.9 26 42-67 2-27 (63)
75 KOG1955|consensus 96.4 0.0073 1.6E-07 38.9 4.0 50 5-67 243-292 (737)
76 KOG2562|consensus 96.3 0.025 5.4E-07 36.0 6.1 63 1-65 359-421 (493)
77 cd05025 S-100A1 S-100A1: S-100 96.3 0.0095 2.1E-07 29.6 3.5 30 39-68 8-39 (92)
78 KOG3555|consensus 96.2 0.0068 1.5E-07 37.3 3.1 52 2-68 259-310 (434)
79 cd05022 S-100A13 S-100A13: S-1 96.2 0.0075 1.6E-07 30.1 2.8 28 41-68 9-37 (89)
80 KOG4666|consensus 96.1 0.0071 1.5E-07 37.0 2.9 60 2-73 305-364 (412)
81 cd00252 SPARC_EC SPARC_EC; ext 96.0 0.015 3.2E-07 30.4 3.4 28 39-66 47-74 (116)
82 PF09279 EF-hand_like: Phospho 96.0 0.012 2.7E-07 28.6 2.9 57 6-71 12-72 (83)
83 cd05027 S-100B S-100B: S-100B 95.9 0.021 4.7E-07 28.3 3.6 28 41-68 9-38 (88)
84 cd05031 S-100A10_like S-100A10 95.9 0.02 4.2E-07 28.6 3.5 30 39-68 7-38 (94)
85 cd05026 S-100Z S-100Z: S-100Z 95.6 0.027 5.8E-07 28.2 3.4 27 42-68 12-40 (93)
86 KOG0751|consensus 95.3 0.058 1.3E-06 35.0 4.6 53 2-67 83-135 (694)
87 PF09069 EF-hand_3: EF-hand; 95.1 0.15 3.2E-06 25.6 5.0 66 5-75 14-82 (90)
88 KOG1029|consensus 95.0 0.042 9.2E-07 37.3 3.5 53 2-67 204-256 (1118)
89 cd05023 S-100A11 S-100A11: S-1 94.5 0.12 2.6E-06 25.7 3.9 29 41-69 10-40 (89)
90 PRK12309 transaldolase/EF-hand 94.5 0.14 3.1E-06 32.1 5.0 28 36-63 330-357 (391)
91 KOG4251|consensus 94.4 0.072 1.6E-06 31.7 3.2 53 2-65 290-342 (362)
92 KOG0041|consensus 94.0 0.089 1.9E-06 30.3 3.1 26 42-67 101-126 (244)
93 cd05024 S-100A10 S-100A10: A s 93.7 0.096 2.1E-06 26.3 2.6 21 2-22 57-77 (91)
94 PF09068 EF-hand_2: EF hand; 93.6 0.57 1.2E-05 24.9 5.5 60 7-66 57-123 (127)
95 KOG4004|consensus 93.5 0.023 5E-07 32.6 0.1 29 39-67 221-249 (259)
96 cd05029 S-100A6 S-100A6: S-100 93.3 0.12 2.5E-06 25.7 2.5 22 2-23 60-81 (88)
97 cd05030 calgranulins Calgranul 93.3 0.14 3E-06 25.3 2.8 22 2-23 60-81 (88)
98 KOG2562|consensus 92.4 0.21 4.5E-06 32.1 3.2 26 42-67 353-378 (493)
99 KOG1029|consensus 92.4 0.44 9.4E-06 32.8 4.8 49 6-67 28-76 (1118)
100 PF00404 Dockerin_1: Dockerin 92.3 0.27 5.8E-06 17.9 2.2 16 3-18 1-16 (21)
101 PF12763 EF-hand_4: Cytoskelet 90.7 0.41 8.9E-06 24.6 2.7 22 2-23 52-73 (104)
102 KOG4666|consensus 90.5 0.79 1.7E-05 28.5 4.1 57 1-67 267-323 (412)
103 KOG2243|consensus 90.2 1.1 2.4E-05 33.4 5.1 55 2-68 4066-4120(5019)
104 KOG0169|consensus 89.6 1.6 3.4E-05 29.8 5.3 55 2-67 145-199 (746)
105 KOG0751|consensus 87.8 1.6 3.4E-05 28.8 4.2 24 42-65 76-99 (694)
106 KOG0042|consensus 87.6 1 2.2E-05 30.0 3.4 55 2-67 602-656 (680)
107 KOG0040|consensus 87.6 1.4 3E-05 32.8 4.3 56 1-66 2304-2359(2399)
108 KOG1954|consensus 87.0 1.2 2.6E-05 28.5 3.4 27 39-65 476-502 (532)
109 PF07879 PHB_acc_N: PHB/PHA ac 85.6 1.4 3.1E-05 20.7 2.5 21 1-21 11-31 (64)
110 cd02977 ArsC_family Arsenate R 84.1 2.8 6E-05 21.1 3.5 31 44-74 61-91 (105)
111 PF12174 RST: RCD1-SRO-TAF4 (R 84.0 2.5 5.3E-05 20.2 3.0 49 7-69 6-54 (70)
112 PF05517 p25-alpha: p25-alpha 83.5 5.5 0.00012 21.8 5.9 55 5-67 14-68 (154)
113 PLN02952 phosphoinositide phos 81.5 6.6 0.00014 26.5 5.1 52 6-67 13-64 (599)
114 PF08976 DUF1880: Domain of un 80.3 3.6 7.8E-05 21.7 3.0 29 39-67 6-34 (118)
115 cd03035 ArsC_Yffb Arsenate Red 80.1 2.2 4.8E-05 21.8 2.2 54 10-74 36-89 (105)
116 KOG0035|consensus 78.4 7.1 0.00015 27.5 4.6 63 3-71 757-819 (890)
117 cd03032 ArsC_Spx Arsenate Redu 77.3 5.1 0.00011 20.6 3.1 56 9-74 36-91 (115)
118 cd03034 ArsC_ArsC Arsenate Red 76.8 3.9 8.5E-05 21.0 2.6 53 9-74 35-90 (112)
119 PF05042 Caleosin: Caleosin re 75.7 12 0.00027 21.2 5.9 56 6-66 109-164 (174)
120 cd07313 terB_like_2 tellurium 75.2 8.6 0.00019 19.1 4.2 52 7-67 13-64 (104)
121 PF03705 CheR_N: CheR methyltr 74.9 6.2 0.00014 17.4 4.5 54 12-70 2-55 (57)
122 PF03960 ArsC: ArsC family; I 74.0 1.4 3E-05 22.5 0.5 57 9-74 32-88 (110)
123 PRK10026 arsenate reductase; P 74.0 4.3 9.3E-05 22.1 2.3 55 10-74 39-93 (141)
124 PRK12559 transcriptional regul 69.8 6.9 0.00015 20.8 2.6 56 9-74 36-91 (131)
125 KOG0169|consensus 68.7 23 0.0005 24.7 5.1 30 38-67 134-163 (746)
126 PF09373 PMBR: Pseudomurein-bi 68.1 7.5 0.00016 15.5 2.7 17 6-22 1-17 (33)
127 PLN02228 Phosphoinositide phos 68.0 26 0.00057 23.6 5.2 54 7-69 36-93 (567)
128 TIGR01848 PHA_reg_PhaR polyhyd 67.1 16 0.00035 19.0 5.4 62 1-67 11-76 (107)
129 KOG4347|consensus 67.0 15 0.00032 25.1 4.0 49 2-62 564-612 (671)
130 PRK13344 spxA transcriptional 66.8 6.9 0.00015 20.9 2.2 56 9-74 36-91 (132)
131 TIGR01616 nitro_assoc nitrogen 65.4 13 0.00029 19.7 3.1 53 10-74 38-90 (126)
132 TIGR00014 arsC arsenate reduct 65.3 11 0.00024 19.4 2.8 57 9-74 35-91 (114)
133 KOG1707|consensus 64.2 11 0.00023 25.5 3.0 31 39-69 314-344 (625)
134 TIGR02675 tape_meas_nterm tape 63.9 6 0.00013 19.0 1.5 24 53-76 27-50 (75)
135 cd03033 ArsC_15kD Arsenate Red 63.1 17 0.00037 18.8 3.2 53 10-74 37-89 (113)
136 KOG3555|consensus 62.2 9.4 0.0002 24.2 2.4 30 38-67 248-277 (434)
137 KOG0998|consensus 61.7 1.9 4.1E-05 30.0 -0.7 52 3-67 293-344 (847)
138 PF12631 GTPase_Cys_C: Catalyt 61.5 17 0.00036 17.2 3.6 31 12-49 42-72 (73)
139 KOG4347|consensus 59.6 16 0.00034 25.0 3.1 29 39-67 554-582 (671)
140 PF10440 WIYLD: Ubiquitin-bind 58.4 20 0.00042 17.0 4.0 11 40-50 30-40 (65)
141 PF09066 B2-adapt-app_C: Beta2 58.2 7 0.00015 20.0 1.2 20 53-72 3-22 (114)
142 PRK01655 spxA transcriptional 58.2 17 0.00036 19.3 2.7 31 43-74 61-91 (131)
143 cd03036 ArsC_like Arsenate Red 56.4 13 0.00029 19.0 2.1 31 44-74 61-92 (111)
144 PF14513 DAG_kinase_N: Diacylg 55.8 32 0.0007 18.7 3.9 47 8-67 6-59 (138)
145 PLN02222 phosphoinositide phos 54.3 49 0.0011 22.5 4.7 54 7-69 37-91 (581)
146 PF08414 NADPH_Ox: Respiratory 53.5 31 0.00067 17.8 3.7 48 6-68 41-92 (100)
147 PF12486 DUF3702: ImpA domain 52.2 29 0.00064 19.1 3.0 25 3-27 79-103 (148)
148 COG5394 Uncharacterized protei 51.5 44 0.00095 19.0 3.7 61 1-66 20-85 (193)
149 PF07492 Trehalase_Ca-bi: Neut 48.4 5.3 0.00011 15.8 -0.1 18 44-61 3-20 (30)
150 PTZ00056 glutathione peroxidas 48.2 48 0.001 18.9 3.7 34 8-55 163-196 (199)
151 KOG2243|consensus 47.3 15 0.00032 28.3 1.7 25 43-67 4060-4084(5019)
152 PF09851 SHOCT: Short C-termin 46.7 16 0.00036 14.3 1.2 13 54-66 14-26 (31)
153 TIGR01617 arsC_related transcr 46.7 8.5 0.00019 19.8 0.4 30 45-74 62-92 (117)
154 TIGR03573 WbuX N-acetyl sugar 45.0 63 0.0014 20.2 4.0 15 7-21 300-314 (343)
155 PRK09430 djlA Dna-J like membr 44.6 70 0.0015 19.3 5.0 51 7-67 69-119 (267)
156 PF06226 DUF1007: Protein of u 44.1 28 0.0006 20.1 2.3 21 2-22 59-79 (212)
157 PF02269 TFIID-18kDa: Transcri 42.7 46 0.001 16.7 2.9 29 43-71 41-69 (93)
158 COG5562 Phage envelope protein 41.1 21 0.00046 19.4 1.4 20 47-66 79-98 (137)
159 COG1393 ArsC Arsenate reductas 40.3 58 0.0012 17.1 3.4 54 10-73 38-91 (117)
160 PF01023 S_100: S-100/ICaBP ty 39.9 35 0.00077 14.5 3.9 32 42-73 8-42 (44)
161 PF09693 Phage_XkdX: Phage unc 38.2 30 0.00066 14.4 1.4 13 7-19 24-36 (40)
162 cd08324 CARD_NOD1_CARD4 Caspas 38.0 56 0.0012 16.3 3.0 47 6-68 26-72 (85)
163 PRK10853 putative reductase; P 37.7 23 0.0005 18.5 1.2 16 58-73 75-90 (118)
164 KOG0039|consensus 37.1 76 0.0017 21.8 3.7 63 6-71 30-92 (646)
165 PF02864 STAT_bind: STAT prote 36.9 98 0.0021 18.8 5.4 55 9-66 178-233 (254)
166 PF08671 SinI: Anti-repressor 36.1 35 0.00077 13.4 1.7 12 10-21 17-28 (30)
167 KOG0998|consensus 35.3 20 0.00044 25.3 1.0 53 2-67 20-72 (847)
168 KOG3442|consensus 33.6 83 0.0018 17.0 3.9 45 7-59 53-97 (132)
169 PF08044 DUF1707: Domain of un 33.4 27 0.00057 15.6 0.9 14 53-66 20-33 (53)
170 PF05099 TerB: Tellurite resis 32.6 28 0.00061 18.2 1.1 21 7-27 37-57 (140)
171 PF10256 Erf4: Golgin subfamil 32.5 64 0.0014 16.6 2.4 20 7-26 27-46 (118)
172 PLN02230 phosphoinositide phos 32.1 1.7E+02 0.0037 20.2 6.2 59 7-69 42-103 (598)
173 smart00549 TAFH TAF homology. 30.9 36 0.00078 17.3 1.2 14 54-67 37-50 (92)
174 PF08726 EFhand_Ca_insen: Ca2+ 30.5 71 0.0015 15.2 3.7 27 41-68 7-33 (69)
175 KOG1265|consensus 30.5 1.6E+02 0.0034 21.8 4.3 37 39-75 220-259 (1189)
176 PF03986 Autophagy_N: Autophag 30.4 37 0.0008 18.7 1.3 18 48-65 19-36 (145)
177 PF07531 TAFH: NHR1 homology t 30.2 43 0.00093 17.1 1.4 14 54-67 38-51 (96)
178 cd07978 TAF13 The TATA Binding 28.3 90 0.0019 15.7 5.6 20 52-71 50-69 (92)
179 PF00027 cNMP_binding: Cyclic 27.3 54 0.0012 15.1 1.5 16 56-71 76-91 (91)
180 PF03979 Sigma70_r1_1: Sigma-7 26.4 52 0.0011 15.9 1.4 15 7-21 19-33 (82)
181 cd06403 PB1_Par6 The PB1 domai 26.3 23 0.00049 17.5 0.0 22 46-67 11-32 (80)
182 PF08485 Polysacc_syn_2C: Poly 26.2 74 0.0016 14.1 1.9 25 47-71 22-46 (48)
183 PF14178 YppF: YppF-like prote 26.2 84 0.0018 14.6 1.9 16 7-22 34-49 (60)
184 KOG3431|consensus 26.2 1.2E+02 0.0026 16.4 2.7 20 7-26 86-105 (129)
185 PF07067 DUF1340: Protein of u 26.2 1.2E+02 0.0026 17.8 2.8 53 8-66 176-228 (236)
186 PF12872 OST-HTH: OST-HTH/LOTU 26.0 81 0.0018 14.4 5.1 26 40-65 31-56 (74)
187 PF09107 SelB-wing_3: Elongati 25.7 76 0.0016 14.0 2.1 16 6-21 7-22 (50)
188 PF08355 EF_assoc_1: EF hand a 25.2 64 0.0014 15.6 1.5 18 50-67 12-29 (76)
189 KOG2871|consensus 25.2 75 0.0016 20.6 2.1 52 2-63 318-369 (449)
190 PF12283 Protein_K: Bacterioph 25.0 81 0.0018 14.1 2.2 21 2-22 17-38 (56)
191 cd00038 CAP_ED effector domain 24.8 70 0.0015 15.1 1.7 21 56-76 94-114 (115)
192 PF02337 Gag_p10: Retroviral G 24.6 1.1E+02 0.0024 15.4 4.0 46 13-65 8-58 (90)
193 PRK12606 GTP cyclohydrolase I; 24.6 1.6E+02 0.0034 17.2 5.2 43 6-48 13-55 (201)
194 PF10208 Armet: Degradation ar 24.5 1.4E+02 0.0031 16.7 2.9 30 39-68 109-138 (154)
195 KOG0506|consensus 24.2 2.4E+02 0.0052 19.2 5.6 58 7-68 100-158 (622)
196 PF09454 Vps23_core: Vps23 cor 24.0 68 0.0015 15.0 1.4 15 53-67 36-50 (65)
197 PF09061 Stirrup: Stirrup; In 23.9 99 0.0021 14.7 4.1 21 7-27 47-67 (79)
198 COG4704 Uncharacterized protei 23.8 14 0.0003 20.2 -1.0 20 1-20 94-113 (151)
199 PLN02223 phosphoinositide phos 23.8 2.5E+02 0.0054 19.2 4.5 63 5-69 27-93 (537)
200 PF09912 DUF2141: Uncharacteri 23.7 29 0.00062 18.0 0.1 14 1-14 60-73 (112)
201 PF12419 DUF3670: SNF2 Helicas 23.3 80 0.0017 17.0 1.8 58 6-65 80-138 (141)
202 PF10891 DUF2719: Protein of u 23.1 72 0.0016 15.7 1.4 18 49-66 28-45 (81)
203 COG5083 SMP2 Uncharacterized p 23.0 99 0.0021 20.7 2.4 36 7-52 383-418 (580)
204 KOG4286|consensus 22.7 93 0.002 22.3 2.3 41 1-52 478-518 (966)
205 COG2143 Thioredoxin-related pr 21.7 1.3E+02 0.0028 17.1 2.4 25 2-26 122-152 (182)
206 PF02761 Cbl_N2: CBL proto-onc 21.7 1.3E+02 0.0027 15.1 5.4 48 8-66 21-68 (85)
207 TIGR01669 phage_XkdX phage unc 21.6 81 0.0017 13.6 1.3 11 8-18 30-40 (45)
208 PF01630 Glyco_hydro_56: Hyalu 21.3 22 0.00048 22.3 -0.6 28 42-69 91-118 (337)
209 PF09960 DUF2194: Uncharacteri 20.9 2.9E+02 0.0064 19.1 4.7 28 1-28 486-513 (585)
210 PF06744 DUF1215: Protein of u 20.8 1.1E+02 0.0024 16.0 2.0 26 49-75 57-82 (125)
211 cd08330 CARD_ASC_NALP1 Caspase 20.7 1.2E+02 0.0027 14.7 3.2 34 39-74 45-79 (82)
212 PF00427 PBS_linker_poly: Phyc 20.7 83 0.0018 17.0 1.5 18 53-70 41-58 (131)
213 PF03477 ATP-cone: ATP cone do 20.3 1.2E+02 0.0027 14.5 4.7 61 6-67 6-66 (90)
214 PF07765 KIP1: KIP1-like prote 20.3 1.3E+02 0.0028 14.7 2.9 15 39-53 24-38 (74)
215 PF10841 DUF2644: Protein of u 20.3 1.2E+02 0.0025 14.1 2.0 16 51-66 5-20 (60)
No 1
>KOG0044|consensus
Probab=99.61 E-value=6.6e-15 Score=82.03 Aligned_cols=77 Identities=47% Similarity=0.823 Sum_probs=69.5
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHhhcC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSKMLA 77 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 77 (78)
+||.||+|+|++.|+..++.+++.+.|..........+++.+..+|+.+|.++||.|+.+||......++.++.+++
T Consensus 108 lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~ 184 (193)
T KOG0044|consen 108 LYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALE 184 (193)
T ss_pred eecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhh
Confidence 58999999999999999999999999874444456678899999999999999999999999999999999998874
No 2
>KOG0034|consensus
Probab=99.59 E-value=7.9e-15 Score=81.53 Aligned_cols=73 Identities=25% Similarity=0.534 Sum_probs=64.0
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHhhcC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSKMLA 77 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 77 (78)
+||.+++|+|+.+|+..+++++ .+..... ........++.++..+|.++||+|+++||++.+.+.|.+++.|+
T Consensus 112 vYD~~~~G~I~reel~~iv~~~---~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~ 184 (187)
T KOG0034|consen 112 VYDLDGDGFISREELKQILRMM---VGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMT 184 (187)
T ss_pred HhcCCCCCcCcHHHHHHHHHHH---HccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcC
Confidence 5899999999999999999986 4544433 45677788999999999999999999999999999999998875
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=8.3e-13 Score=62.26 Aligned_cols=58 Identities=33% Similarity=0.615 Sum_probs=47.8
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
+|.+++|+|+.+|+..++.. .+.... ....+..+..+|+.+|++++|.|+++||..++
T Consensus 9 ~D~d~~G~i~~~el~~~~~~----~~~~~~---~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 9 FDKDGDGYISKEELRRALKH----LGRDMS---DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HSTTSSSEEEHHHHHHHHHH----TTSHST---HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HcCCccCCCCHHHHHHHHHH----hccccc---HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 79999999999999999998 343221 23456678889999999999999999999874
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.33 E-value=6.6e-12 Score=68.24 Aligned_cols=59 Identities=29% Similarity=0.572 Sum_probs=52.7
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCH
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDE 70 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 70 (78)
+||.+++|+|+..+++.++.. .|.... ++++..+++.+|.+++|.|++++|++.+...+
T Consensus 100 ~fD~d~dG~Is~~eL~~vl~~----lge~~~-------deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 100 LFDKDHDGYISIGELRRVLKS----LGERLS-------DEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HhCCCCCceecHHHHHHHHHh----hcccCC-------HHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 589999999999999999997 676654 88899999999999999999999999887654
No 5
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=6.6e-11 Score=53.76 Aligned_cols=51 Identities=29% Similarity=0.498 Sum_probs=44.1
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCC-CCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGAC-SSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.+|.|+.++|+.++.. +|.. .+ ...+..+|..+|.+++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~----~g~~~~s-------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSK----LGIKDLS-------EEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHH----TTSSSSC-------HHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH----hCCCCCC-------HHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 3799999999999965 5655 54 66699999999999999999999999875
No 6
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.26 E-value=2.4e-11 Score=60.54 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=47.0
Q ss_pred ccC-CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHH-HHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDV-DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAE-ERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~-~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
||. +++|+|+..||+.++.+- +|...+ . ..++.+++..|.++||.|+++||+.++.
T Consensus 17 fd~~~~~g~i~~~ELk~ll~~e---lg~~ls-------~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 17 ASVKGGKESLTASEFQELLTQQ---LPHLLK-------DVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HhCCCCCCeECHHHHHHHHHHH---hhhhcc-------CHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 788 999999999999999871 343222 2 6699999999999999999999999875
No 7
>KOG0027|consensus
Probab=99.24 E-value=4.8e-11 Score=64.50 Aligned_cols=57 Identities=30% Similarity=0.599 Sum_probs=51.4
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+||.+++|+|+..||+.++.. +|...+ ...+..+++..|.+++|.|++++|++++..
T Consensus 93 ~fD~d~~G~Is~~el~~~l~~----lg~~~~-------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 93 VFDKDGDGFISASELKKVLTS----LGEKLT-------DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHccCCCCcCcHHHHHHHHHH----hCCcCC-------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 489999999999999999998 676655 777999999999999999999999999864
No 8
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.19 E-value=1.8e-10 Score=57.83 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=46.4
Q ss_pred cc-CCCCc-eeeHHHHHHHHHHHH-HHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YD-VDGNG-VIDIQEMTKIVQAIY-DMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D-~~~~G-~i~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
|| .+|+| +|+..||+.++.... ..+.... ....++.+++.+|.+++|.|+++||+.++..
T Consensus 19 ~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~-------~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 19 YSGKEGDRYKLSKGELKELLQRELTDFLSSQK-------DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHccCCCCCEECHHHHHHHHHHHhHHhccccc-------CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 55 78998 599999999997732 1112111 2567999999999999999999999998753
No 9
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.18 E-value=1.8e-10 Score=57.34 Aligned_cols=60 Identities=17% Similarity=0.375 Sum_probs=47.8
Q ss_pred Ccc-CCCCc-eeeHHHHHHHHHHHH-HHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYD-VDGNG-VIDIQEMTKIVQAIY-DMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D-~~~~G-~i~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|| ++|+| +|+..|++.+++.-+ ...|...+ +..++.+++..|.+++|+|+++||+.++.
T Consensus 16 ~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~-------~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 16 QYSGREGDKHKLKKSELKELINNELSHFLEEIKE-------QEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC-------HHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 366 79999 699999999998611 11344333 66799999999999999999999998874
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=3.4e-10 Score=56.89 Aligned_cols=60 Identities=22% Similarity=0.409 Sum_probs=47.6
Q ss_pred ccC-CC-CceeeHHHHHHHHHHH-HHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDV-DG-NGVIDIQEMTKIVQAI-YDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~-~~-~G~i~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
||. ++ +|+|+..|+..+++.. ....|...+ +..+..+++.+|.+++|.|++++|+.++..
T Consensus 17 ~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s-------~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 17 YAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD-------PMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HhccCCCCCeECHHHHHHHHHHHhHHHhhcccc-------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 675 87 6999999999999862 222343333 567999999999999999999999988753
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.12 E-value=5.3e-10 Score=55.95 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=47.4
Q ss_pred Ccc-CCCCc-eeeHHHHHHHHHH-HHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYD-VDGNG-VIDIQEMTKIVQA-IYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D-~~~~G-~i~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|| .+++| .|+..|++.+++. +...++..++ +..+..+++.+|.+++|.|++++|+.++.
T Consensus 17 ~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s-------~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 17 AHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKD-------ADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHhcccCCCCeECHHHHHHHHHHHHHHHccCCCC-------HHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 365 99999 5999999999975 3222333222 56799999999999999999999999875
No 12
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.10 E-value=7.1e-10 Score=55.18 Aligned_cols=58 Identities=16% Similarity=0.359 Sum_probs=46.3
Q ss_pred ccC-CC-CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDV-DG-NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~-~~-~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
||. +| +|+|+.+||+.++.+.. ..|...+ ++.+..+++..|.+++|+|+++||+.++.
T Consensus 19 y~~~~~~~g~Is~~EL~~~l~~~~-~lg~k~t-------~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 19 YSGREGDKNTLSKKELKELIQKEL-TIGSKLQ-------DAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHccCCCCCEECHHHHHHHHHHHH-hcCCCCC-------HHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 444 56 78999999999997511 1455444 67799999999999999999999998875
No 13
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.09 E-value=2.9e-10 Score=59.14 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=45.3
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHh
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 71 (78)
+|.|++|+|+.+|+..+. .+ ..+..+..++..+|.++||.||++||+.++.+..+
T Consensus 57 lD~d~DG~Ls~~EL~~~~------l~---------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~~~ 111 (116)
T cd00252 57 LDGNYDGKLSHHELAPIR------LD---------PNEHCIKPFFESCDLDKDGSISLDEWCYCFIKEDD 111 (116)
T ss_pred HCCCCCCcCCHHHHHHHH------cc---------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHhChhh
Confidence 689999999999999654 11 12566889999999999999999999999955443
No 14
>KOG0027|consensus
Probab=99.09 E-value=5.7e-10 Score=60.33 Aligned_cols=57 Identities=28% Similarity=0.627 Sum_probs=52.1
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+||.+++|+|+..++..+++. +|..++ ...+..++...|.+++|.|++++|+.++.+
T Consensus 16 ~fD~d~~G~i~~~el~~~lr~----lg~~~t-------~~el~~~~~~~D~dg~g~I~~~eF~~l~~~ 72 (151)
T KOG0027|consen 16 LFDKDGDGKISVEELGAVLRS----LGQNPT-------EEELRDLIKEIDLDGDGTIDFEEFLDLMEK 72 (151)
T ss_pred HHCCCCCCcccHHHHHHHHHH----cCCCCC-------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 479999999999999999998 787766 788999999999999999999999999864
No 15
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.08 E-value=8.6e-10 Score=51.77 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=46.5
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+|.+++|.|+.+|+..++.. .|. + ...+..+++.+|.+++|.|++++|+.++..
T Consensus 8 ~D~~~~G~i~~~el~~~l~~----~g~--~-------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 8 LDPDGDGLISGDEARPFLGK----SGL--P-------RSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hCCCCCCcCcHHHHHHHHHH----cCC--C-------HHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 68999999999999999887 443 1 566899999999999999999999998753
No 16
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=8.1e-10 Score=55.09 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=45.6
Q ss_pred ccCCCCc-eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNG-VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|.+|+| +|+.+||..++..-...+... ......+..+++.+|.+++|.|+++||+.++.
T Consensus 19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~------~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 19 AGKDGDSYQLSKTEFLSFMNTELASFTKN------QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred hccCCCcCeECHHHHHHHHHHhhhHhhcC------CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4677876 999999999998732111110 11256699999999999999999999999875
No 17
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.03 E-value=2.8e-09 Score=48.58 Aligned_cols=54 Identities=31% Similarity=0.617 Sum_probs=46.1
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
+|.+++|.|+..++..+++. .+.... ...+..+|..+|.+++|.|++++|..++
T Consensus 9 ~d~~~~g~l~~~e~~~~l~~----~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 9 FDKDGDGTISADELKAALKS----LGEGLS-------EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred hCCCCCCcCcHHHHHHHHHH----hCCCCC-------HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 68899999999999999987 444333 6678889999999999999999998765
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.01 E-value=3e-09 Score=53.57 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=46.2
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|.+++|.|+.+++..+++. .+. + ...+..+++.+|.+++|.|+++||+.++.
T Consensus 19 ~D~d~~G~Is~~el~~~l~~----~~~--~-------~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 19 LDKNQDGTVTGAQAKPILLK----SGL--P-------QTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred hCCCCCCeEeHHHHHHHHHH----cCC--C-------HHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 78999999999999999987 342 1 56688999999999999999999999875
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.98 E-value=3.1e-09 Score=52.68 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=47.1
Q ss_pred ccC--CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDV--DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~--~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
||. +++|+|+..++..+++.. .|...+ .......+..++..+|.+++|.|++++|+.++..
T Consensus 17 ~D~~~~~~G~Is~~el~~~l~~~---~g~~~~---~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 17 YSGKEGDKDTLSKKELKELLETE---LPNFLK---NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HhhccCCCCcCcHHHHHHHHHHH---hhhhcc---CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 678 799999999999999762 232111 0012566999999999999999999999998864
No 20
>PTZ00184 calmodulin; Provisional
Probab=98.95 E-value=6.9e-09 Score=55.21 Aligned_cols=55 Identities=31% Similarity=0.611 Sum_probs=35.3
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
||.+++|+|+..++..++.. .+.... ...+..++..+|.+++|.|+++||+.++.
T Consensus 93 ~D~~~~g~i~~~e~~~~l~~----~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 93 FDRDGNGFISAAELRHVMTN----LGEKLT-------DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred hCCCCCCeEeHHHHHHHHHH----HCCCCC-------HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 56667777777777666655 343322 44566667777777777777777776654
No 21
>PTZ00183 centrin; Provisional
Probab=98.95 E-value=3.9e-09 Score=56.84 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHhccC
Q psy15326 40 ERAKNIFAKMDENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 40 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 69 (78)
..+..++..+|.+++|.|++++|..++...
T Consensus 126 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 126 EELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 334445555555555555555555555443
No 22
>KOG0038|consensus
Probab=98.94 E-value=4.5e-09 Score=56.44 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=54.6
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHhhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSKML 76 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 76 (78)
+||.|++++|...++..++.++.+ + ..++...+..+++++...|.++||++++.||.+++.+-|+.+..+
T Consensus 116 IYDfd~D~~i~~~DL~~~l~~lTr--~----eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTF 185 (189)
T KOG0038|consen 116 IYDFDGDEFIGHDDLEKTLTSLTR--D----ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTF 185 (189)
T ss_pred EeecCCCCcccHHHHHHHHHHHhh--c----cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhh
Confidence 477888888888888887777431 1 122334455689999999999999999999999999999988765
No 23
>PF14658 EF-hand_9: EF-hand domain
Probab=98.90 E-value=2.4e-08 Score=46.99 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=49.4
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCC-CCCCCCcchHHHHHHHHHHhcCCCCC-CceeHHHHHHHhcc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGA-CSSNRPADSAEERAKNIFAKMDENND-GQLTQDEFLKGCLQ 68 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 68 (78)
+||.++.|.|...++...++++ +. .+. +..++.+...+|+++. |.|+++.|+..|+.
T Consensus 6 ~fD~~~tG~V~v~~l~~~Lra~----~~~~p~-------e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 6 AFDTQKTGRVPVSDLITYLRAV----TGRSPE-------ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred hcCCcCCceEeHHHHHHHHHHH----cCCCCc-------HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5899999999999999999984 44 444 6789999999999988 99999999998753
No 24
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.89 E-value=2.9e-09 Score=42.61 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
++.+|+.+|.+++|.|+++||+.++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 678999999999999999999998753
No 25
>PTZ00183 centrin; Provisional
Probab=98.82 E-value=3.1e-08 Score=53.31 Aligned_cols=55 Identities=31% Similarity=0.576 Sum_probs=38.4
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|.+++|+|+..||..+++. .|.... ...+..+|..+|.+++|.|++++|...+.
T Consensus 26 ~D~~~~G~i~~~e~~~~l~~----~g~~~~-------~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 26 FDTDGSGTIDPKELKVAMRS----LGFEPK-------KEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred hCCCCCCcccHHHHHHHHHH----hCCCCC-------HHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 67888889999998888876 344332 34566777777777777777777766543
No 26
>KOG0037|consensus
Probab=98.80 E-value=2.8e-08 Score=56.23 Aligned_cols=60 Identities=28% Similarity=0.467 Sum_probs=46.4
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEEL 72 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 72 (78)
||+|++|.|+..||+.++.. +|.... .+..+.+++++|..++|.|.+++|++++.....+
T Consensus 133 ~D~D~SG~I~~sEL~~Al~~----~Gy~Ls-------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~l 192 (221)
T KOG0037|consen 133 YDRDRSGTIDSSELRQALTQ----LGYRLS-------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRL 192 (221)
T ss_pred cccCCCCcccHHHHHHHHHH----cCcCCC-------HHHHHHHHHHhccccCCceeHHHHHHHHHHHHHH
Confidence 68888888888888888887 777765 6667888888887778888888888887544433
No 27
>PTZ00184 calmodulin; Provisional
Probab=98.79 E-value=4e-08 Score=52.23 Aligned_cols=55 Identities=25% Similarity=0.562 Sum_probs=39.9
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|.+++|.|+..+|..++.. .+..+. ...+..+++.+|.+++|.|++++|+.++.
T Consensus 20 ~D~~~~G~i~~~e~~~~l~~----~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 20 FDKDGDGTITTKELGTVMRS----LGQNPT-------EAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HcCCCCCcCCHHHHHHHHHH----hCCCCC-------HHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 68889999999999888765 344332 34567777777777777777777777654
No 28
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.75 E-value=5.3e-08 Score=53.15 Aligned_cols=63 Identities=29% Similarity=0.501 Sum_probs=45.1
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCC-----------------------------cchHHHHHHHHHHhcCC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRP-----------------------------ADSAEERAKNIFAKMDE 51 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~d~ 51 (78)
++|++++|.|+..+|..+++. +|.+++... ....++.+..+|+.+|.
T Consensus 28 l~D~d~~G~I~~~el~~ilr~----lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~ 103 (160)
T COG5126 28 LFDRDSDGLIDRNELGKILRS----LGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDK 103 (160)
T ss_pred HhCcCCCCCCcHHHHHHHHHH----cCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCC
Confidence 478888999999999888875 454443110 11235567888888888
Q ss_pred CCCCceeHHHHHHHhc
Q psy15326 52 NNDGQLTQDEFLKGCL 67 (78)
Q Consensus 52 ~~~g~i~~~ef~~~~~ 67 (78)
+++|+|+..+++.++.
T Consensus 104 d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 104 DHDGYISIGELRRVLK 119 (160)
T ss_pred CCCceecHHHHHHHHH
Confidence 8888888888888877
No 29
>KOG0044|consensus
Probab=98.68 E-value=2.6e-08 Score=55.85 Aligned_cols=56 Identities=30% Similarity=0.426 Sum_probs=45.7
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
||.|++|.|++.||...+..+. .| ..++.+..+|+.+|.+++|.|+++|+..++..
T Consensus 73 fD~~~dg~i~F~Efi~als~~~--rG---------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTS--RG---------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHc--CC---------cHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 7899999999999887777642 12 33666788899999999999999999998864
No 30
>KOG0028|consensus
Probab=98.64 E-value=1.4e-07 Score=51.30 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.+.+.++|+.+|.+++|+|+..+|+.+..
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHH
Confidence 44466666666666666666666666654
No 31
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=6.4e-08 Score=48.30 Aligned_cols=55 Identities=11% Similarity=0.264 Sum_probs=41.7
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.+.++..||+.++.+= ++.-.. .......++.+++..|.++||.|+++||+.++.
T Consensus 21 ~~tLsk~Elk~Ll~~E---lp~~l~---~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 21 KNYLNRDDLQKLMEKE---FSEFLK---NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred CCcCCHHHHHHHHHHH---hHHHHc---CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4689999999999762 221111 112256699999999999999999999999874
No 32
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.63 E-value=3.8e-07 Score=45.35 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=43.1
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
++|+|+..||+.++.+. .|...+ ....+..++.+|+.+|.+++|.|++++|+.++.
T Consensus 23 ~~~~Is~~El~~ll~~~---~g~~~t---~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 23 HPDTLYKKEFKQLVEKE---LPNFLK---KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred CcccCCHHHHHHHHHHH---hhHhhc---cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 46899999999999752 232111 112256799999999999999999999999876
No 33
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.60 E-value=1e-07 Score=36.81 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
++.+|+.+|.+++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999999864
No 34
>KOG0028|consensus
Probab=98.59 E-value=3.5e-07 Score=49.76 Aligned_cols=57 Identities=21% Similarity=0.520 Sum_probs=47.5
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
++|.+++|.|+..+|..+.+. +|.+.+ .+.+..++..+|.+++|.|..+||.+++..
T Consensus 114 l~D~D~~Gkis~~~lkrvake----Lgenlt-------D~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 114 LFDDDKTGKISQRNLKRVAKE----LGENLT-------DEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cccccCCCCcCHHHHHHHHHH----hCcccc-------HHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 367788888888877665555 788776 677999999999999999999999998764
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.58 E-value=2.6e-07 Score=59.67 Aligned_cols=56 Identities=25% Similarity=0.442 Sum_probs=48.0
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+|.+++|.|+..||..++.. ++...+ ++.+..+|+.+|.+++|.|+.+||.+++..
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~----lg~~~s-------eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKA----FGNLVA-------ANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHH----hccCCC-------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 68999999999999999986 443322 667999999999999999999999999875
No 36
>KOG0031|consensus
Probab=98.56 E-value=2.5e-07 Score=50.07 Aligned_cols=63 Identities=22% Similarity=0.436 Sum_probs=49.6
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCC--------------------------cchHHHHHHHHHHhcCCCCC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRP--------------------------ADSAEERAKNIFAKMDENND 54 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~d~~~~ 54 (78)
++|+|++|.|.+++++.++.+ +|...+..+ -..+++.+-..|+.+|.++.
T Consensus 40 ~mDqnrDG~IdkeDL~d~~aS----lGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~ 115 (171)
T KOG0031|consen 40 LMDQNRDGFIDKEDLRDMLAS----LGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGS 115 (171)
T ss_pred HHhccCCCcccHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCC
Confidence 479999999999999999987 443322111 12256678889999999999
Q ss_pred CceeHHHHHHHhc
Q psy15326 55 GQLTQDEFLKGCL 67 (78)
Q Consensus 55 g~i~~~ef~~~~~ 67 (78)
|.|..+.++.++.
T Consensus 116 G~I~~d~lre~Lt 128 (171)
T KOG0031|consen 116 GKIDEDYLRELLT 128 (171)
T ss_pred CccCHHHHHHHHH
Confidence 9999999999986
No 37
>KOG0041|consensus
Probab=98.54 E-value=2.3e-07 Score=52.28 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=48.1
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
||.+.||+|+..|+..+|++ +|.+.+ .--++.+++..|.+.+|+|++-||.-++.
T Consensus 108 yDe~rDgfIdl~ELK~mmEK----LgapQT-------HL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 108 YDEDRDGFIDLMELKRMMEK----LGAPQT-------HLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred hcccccccccHHHHHHHHHH----hCCchh-------hHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 79999999999999999998 676544 44589999999999999999999987764
No 38
>KOG0037|consensus
Probab=98.48 E-value=7.2e-07 Score=50.64 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=37.3
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
|||.+++|.|...||..+.+.+ ..|..+|+.+|+|+.|.|+..|+...+.
T Consensus 102 mfd~~~~G~i~f~EF~~Lw~~i-----------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~ 151 (221)
T KOG0037|consen 102 MFDRDNSGTIGFKEFKALWKYI-----------------NQWRNVFRTYDRDRSGTIDSSELRQALT 151 (221)
T ss_pred HhcCCCCCccCHHHHHHHHHHH-----------------HHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 3566666666666666666652 3388889999999999999999988875
No 39
>KOG0030|consensus
Probab=98.48 E-value=6.9e-07 Score=47.67 Aligned_cols=56 Identities=25% Similarity=0.531 Sum_probs=45.9
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+||++++|+|...|++.++.. +|...+ +.+++.++.-.. +++|.|.++.|++.+..
T Consensus 96 vFDkeg~G~i~~aeLRhvLtt----lGekl~-------eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 96 VFDKEGNGTIMGAELRHVLTT----LGEKLT-------EEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred hhcccCCcceeHHHHHHHHHH----HHhhcc-------HHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 589999999999999999998 676655 667888776653 77899999999988653
No 40
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.39 E-value=3.7e-06 Score=37.63 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=36.8
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+++..|++.+++. ++... .+..+..+|+.+|.+++|++..+||..++.
T Consensus 1 kmsf~Evk~lLk~----~NI~~-------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKM----MNIEM-------DDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHH----TT-----------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----HccCc-------CHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 3678888888887 44433 277799999999999999999999998865
No 41
>KOG0377|consensus
Probab=98.39 E-value=2e-06 Score=53.55 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=50.0
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.|.|++|.|+.+||+++.+-+.+.+....+ .+.+.++-+..|.++||.|++.||....+
T Consensus 556 iD~D~SG~isldEF~~a~~l~~sh~~~~i~-------~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 556 IDADNSGEISLDEFRTAWKLLSSHMNGAIS-------DDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hccCCCCceeHHHHHHHHHHHHhhcCCCcC-------HHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 689999999999999999876555554443 67788999999999999999999998865
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=9.6e-07 Score=35.61 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+..+|+.+|.+++|.|+.+||.+++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 67899999999999999999999886
No 43
>KOG0031|consensus
Probab=98.31 E-value=4.8e-06 Score=45.23 Aligned_cols=58 Identities=16% Similarity=0.358 Sum_probs=51.5
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 69 (78)
+||.+++|.|....++.++.. .|.+.+ .+.++.+|+.+-.+..|.|++.+|+.++...
T Consensus 109 ~FD~~~~G~I~~d~lre~Ltt----~gDr~~-------~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 109 TFDDEGSGKIDEDYLRELLTT----MGDRFT-------DEEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred hcCccCCCccCHHHHHHHHHH----hcccCC-------HHHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 489999999999999999988 676655 7889999999999999999999999998743
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.29 E-value=1.1e-06 Score=35.07 Aligned_cols=20 Identities=35% Similarity=0.826 Sum_probs=18.6
Q ss_pred ccCCCCceeeHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQA 21 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~ 21 (78)
||+|++|+|+.+||..++++
T Consensus 9 ~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 9 FDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HSTTSSSEEEHHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHh
Confidence 79999999999999999876
No 45
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.25 E-value=1.2e-05 Score=41.15 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=41.6
Q ss_pred CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 5 DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 5 ~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.++|+|+..+...++.+ .+. +...+..+|...|.+++|+++++||+-.+.
T Consensus 21 ~~~g~isg~~a~~~f~~----S~L---------~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 21 PQDGKISGDQAREFFMK----SGL---------PRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp SSTTEEEHHHHHHHHHH----TTS---------SHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCCeEeHHHHHHHHHH----cCC---------CHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 35799999999988887 332 267799999999999999999999998765
No 46
>KOG0030|consensus
Probab=98.14 E-value=5.5e-06 Score=44.29 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=47.3
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCC--CCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDEN--NDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~ 67 (78)
+||..++|.|+..+...+++. +|.+|+ ++.+.+....++++ +-.+|++++|..++.
T Consensus 19 lfD~~gD~ki~~~q~gdvlRa----lG~nPT-------~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 19 LFDRTGDGKISGSQVGDVLRA----LGQNPT-------NAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred HHhccCcccccHHHHHHHHHH----hcCCCc-------HHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 489999999999999999998 899887 77788888877776 456889998888875
No 47
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.14 E-value=4.7e-06 Score=51.39 Aligned_cols=43 Identities=35% Similarity=0.660 Sum_probs=36.9
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+||.+++|+|+.+||.. +..+|..+|.+++|.|+++||.+.+.
T Consensus 342 ~~D~dgdG~Is~~E~~~------------------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 342 LYDLDGDGFITREEWLG------------------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HhCCCCCCcCcHHHHHH------------------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 47999999999999831 46689999999999999999999875
No 48
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.12 E-value=5.3e-07 Score=46.81 Aligned_cols=51 Identities=29% Similarity=0.513 Sum_probs=34.7
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
.|.|++|.|+..|+..+... + . ..+..+..+++.+|.++||.||..||..+
T Consensus 63 LD~n~d~~L~~~El~~l~~~----l--~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 63 LDRNKDGVLDRSELKPLRRP----L--M-------PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp H--T-SSEE-TTTTGGGGST----T--S-------TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hcCCCCCccCHHHHHHHHHH----H--h-------hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 48899999999999765443 1 1 12455888999999999999999999864
No 49
>KOG4065|consensus
Probab=98.08 E-value=3.9e-05 Score=39.96 Aligned_cols=65 Identities=28% Similarity=0.309 Sum_probs=47.1
Q ss_pred CccCCCCceeeHHHHHHHHHHHHH--HhCCCC-CCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYD--MLGACS-SNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
|+|.|++|+++--|+...+..+-+ ..|..+ .-.+....+..++.+++.-|.++||.|++.||.+.
T Consensus 75 MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 75 MHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 578999999999999988876533 333321 12223334555788888999999999999999875
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=97.93 E-value=4e-05 Score=49.95 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=41.4
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhC-CCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLG-ACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
++|++++|++ +..++++ +| ..++ ......+..+|..+|.+++|.|+++||..++.
T Consensus 151 lfD~dgdG~i----Lg~ilrs----lG~~~pt----e~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 151 LLDPSSSNKV----VGSIFVS----CSIEDPV----ETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHCCCCCCcC----HHHHHHH----hCCCCCC----HHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 4789999986 6666665 66 3443 11122489999999999999999999999885
No 51
>KOG0040|consensus
Probab=97.93 E-value=2.1e-05 Score=55.09 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=51.6
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.||++.+|+++..+|..|+++ .|+....-+...++-.++.++...|++.+|+|+..+|.++|-
T Consensus 2261 hFDkek~G~Ldhq~F~sCLrs----lgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2261 HFDKEKNGRLDHQHFKSCLRS----LGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HhchhhccCCcHHHHHHHHHh----cCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 389999999999999999998 777653222233344589999999999999999999999985
No 52
>KOG0034|consensus
Probab=97.92 E-value=3.6e-05 Score=43.25 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=37.8
Q ss_pred cCCCCce-eeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 3 DVDGNGV-IDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 3 D~~~~G~-i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+.+++|. |++.+|...+..+ .. ....+..+.-+|+.+|.+++|.|+.+|+..++.
T Consensus 76 ~~~~~~~~v~F~~Fv~~ls~f----~~------~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~ 131 (187)
T KOG0034|consen 76 DTDGNGDPVDFEEFVRLLSVF----SP------KASKREKLRFAFRVYDLDGDGFISREELKQILR 131 (187)
T ss_pred hccCCCCccCHHHHHHHHhhh----cC------CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 4444444 6666655555542 11 112345789999999999999999999999875
No 53
>KOG0036|consensus
Probab=97.90 E-value=5.2e-05 Score=46.96 Aligned_cols=57 Identities=26% Similarity=0.449 Sum_probs=41.7
Q ss_pred cCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCH
Q psy15326 3 DVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDE 70 (78)
Q Consensus 3 D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 70 (78)
|.+++|.|..+|+...++. +|...+ .+.+.+++.-.|+++++.|+++||...+...|
T Consensus 92 D~~hdG~i~~~Ei~~~l~~----~gi~l~-------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKD----LGIQLS-------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred ccccCCccCHHHHHHHHHH----hCCccC-------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 5666677777776666665 555443 56677888899999999999999998876444
No 54
>KOG4223|consensus
Probab=97.90 E-value=6.4e-05 Score=45.10 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=46.2
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.|.+++|+|+..|+..++...++.. ....+.+-|..+|.+.+|.|+|+|+...+.
T Consensus 86 iD~~~Dgfv~~~El~~wi~~s~k~~-----------v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 86 IDSDSDGFVTESELKAWIMQSQKKY-----------VVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hcCCCCCceeHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 5778899999999999998754332 256688899999999999999999998876
No 55
>KOG4223|consensus
Probab=97.89 E-value=3.2e-05 Score=46.32 Aligned_cols=60 Identities=27% Similarity=0.412 Sum_probs=44.9
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.|+||+|+|+.+||.-=+-+ ..+ ...++.+......+++...|.|+||+++.+|...++.
T Consensus 209 ~Dkn~DG~I~~eEfigd~~~---~~~---~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~ 268 (325)
T KOG4223|consen 209 IDKNGDGKISLEEFIGDLYS---HEG---NEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL 268 (325)
T ss_pred cccCCCCceeHHHHHhHHhh---ccC---CCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC
Confidence 47899999998887644333 222 2334556666678899999999999999999998875
No 56
>KOG0036|consensus
Probab=97.88 E-value=8.6e-05 Score=46.02 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=47.0
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHh
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 71 (78)
+|.+++|.++..++...+.++ +.. ....+....++..+|.+.+|+++++||.+.+...+.
T Consensus 23 lD~~~~g~~d~~~l~k~~~~l----~~~------~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~ 82 (463)
T KOG0036|consen 23 LDSKNDGQVDLDQLEKGLEKL----DHP------KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL 82 (463)
T ss_pred hccCCCCceeHHHHHHHHHhc----CCC------CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH
Confidence 678899999999998877773 322 112566888999999999999999999999875554
No 57
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.85 E-value=2.8e-05 Score=31.21 Aligned_cols=19 Identities=42% Similarity=0.926 Sum_probs=17.2
Q ss_pred ccCCCCceeeHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQ 20 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~ 20 (78)
||.+++|+|+.+||..+++
T Consensus 9 ~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 9 FDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp H-TTSSSEEEHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHH
Confidence 7999999999999999998
No 58
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.82 E-value=2.5e-05 Score=29.96 Aligned_cols=18 Identities=39% Similarity=0.916 Sum_probs=16.0
Q ss_pred ccCCCCceeeHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIV 19 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~ 19 (78)
+|.|++|.|+.+||..++
T Consensus 8 ~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 8 FDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HTTTSSSEEEHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHC
Confidence 689999999999998764
No 59
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.74 E-value=7.1e-05 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+..+|+.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998753
No 60
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.61 E-value=0.00012 Score=34.02 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+..+|+.+|.+++|.|+.+||..++..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~ 28 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKH 28 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 678999999999999999999999863
No 61
>KOG4251|consensus
Probab=97.50 E-value=0.0002 Score=41.99 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=39.8
Q ss_pred ccCCCCceeeHHHHHHHHHHHH-HHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIY-DMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
.|.|-+|+|+..|+++++..-. ..+. .....-+..|+..|+++||.|+|+||.--.
T Consensus 110 vDVNtDrkisAkEmqrwImektaEHfq---------eameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 110 VDVNTDRKISAKEMQRWIMEKTAEHFQ---------EAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred cccCccccccHHHHHHHHHHHHHHHHH---------HHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 3678899999999998876521 1111 112224567888999999999999997654
No 62
>KOG0038|consensus
Probab=97.42 E-value=0.00012 Score=39.71 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=45.5
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
|..+|.|.+++++|..++.-+..+.+. +-.+..+|+.+|.++|+.|..+++...+.
T Consensus 80 FSeDG~GnlsfddFlDmfSV~sE~APr----------dlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVFSEMAPR----------DLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred hccCCCCcccHHHHHHHHHHHHhhChH----------HhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 567899999999999999875433331 33488899999999999999999988875
No 63
>KOG0046|consensus
Probab=97.38 E-value=0.00064 Score=43.50 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 5 DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 5 ~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+++|+|+..++...+.+. +...+ ...+++++.++...+++.+|+|++++|+..+.
T Consensus 30 ~~~G~v~~~~l~~~f~k~----~~~~g----~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKA----KLPLG----YFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred CCCCeeehHHhHHHHHHh----ccccc----chhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 788999999999999873 32221 23477899999999999999999999999764
No 64
>KOG3866|consensus
Probab=97.12 E-value=0.0027 Score=38.51 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=45.6
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchH--HHH----HHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSA--EER----AKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
++|.|++|+++..|+..++..-...+. .++.++++.. ++. ..-+++..|.++|.-|+.+||.+...
T Consensus 252 LHD~NsDGfldeqELEaLFtkELEKvY-dpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 252 LHDLNSDGFLDEQELEALFTKELEKVY-DPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred eeccCCcccccHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 478999999999999988765433332 2222222221 111 35577889999999999999998764
No 65
>KOG2643|consensus
Probab=97.02 E-value=0.0034 Score=39.50 Aligned_cols=52 Identities=25% Similarity=0.476 Sum_probs=39.1
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|.+++++.++.++|..+++.++ .+.+.--|..+|....|.|+..+|..++.
T Consensus 294 FFG~rg~~kLs~deF~~F~e~Lq---------------~Eil~lEF~~~~~~~~g~Ise~DFA~~lL 345 (489)
T KOG2643|consen 294 FFGKRGNGKLSIDEFLKFQENLQ---------------EEILELEFERFDKGDSGAISEVDFAELLL 345 (489)
T ss_pred hhccCCCccccHHHHHHHHHHHH---------------HHHHHHHHHHhCcccccccCHHHHHHHHH
Confidence 46788999999999999999853 44556666777777667777777777663
No 66
>KOG4578|consensus
Probab=97.02 E-value=0.0011 Score=40.30 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=43.6
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
.|.|.++.|...|+..+=+-+.+. ..++....++++.+|.++|..|+++||..++..
T Consensus 342 LdkN~nn~i~rrEwKpFK~~l~k~----------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 342 LDKNSNNDIERREWKPFKRVLLKK----------SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ecccccCccchhhcchHHHHHHhh----------ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 578889999988866443322111 234777899999999999999999999999863
No 67
>KOG2643|consensus
Probab=96.89 E-value=0.0005 Score=43.06 Aligned_cols=52 Identities=17% Similarity=0.387 Sum_probs=40.6
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
|+.+.+|.|++.|+.-++.-+ . .++....-.|+.+|.|+||.|+.+||....
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlL----S---------~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLL----S---------IPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHH----c---------cCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 567789999999987555432 1 114447788999999999999999998765
No 68
>KOG0377|consensus
Probab=96.76 E-value=0.0092 Score=37.94 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=44.7
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCC-------CCCc----------------chHH--------------HHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSS-------NRPA----------------DSAE--------------ERAKN 44 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~-------~~~~----------------~~~~--------------~~~~~ 44 (78)
+|...+|+|+...+..+|+++.+. +.++- ..+. ...+ ..+..
T Consensus 473 ~D~~ksG~lsis~Wa~~mE~i~~L-~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~Let 551 (631)
T KOG0377|consen 473 YDPKKSGKLSISHWAKCMENITGL-NLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLET 551 (631)
T ss_pred cChhhcCeeeHHHHHHHHHHHhcC-CCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHH
Confidence 688899999999999999887421 11100 0000 0000 11467
Q ss_pred HHHhcCCCCCCceeHHHHHHHhc
Q psy15326 45 IFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 45 ~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|+..|.++.|.|+.+||..++.
T Consensus 552 iF~~iD~D~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 552 IFNIIDADNSGEISLDEFRTAWK 574 (631)
T ss_pred HHHHhccCCCCceeHHHHHHHHH
Confidence 88999999999999999999874
No 69
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.75 E-value=0.002 Score=28.76 Aligned_cols=20 Identities=35% Similarity=0.768 Sum_probs=18.0
Q ss_pred ccCCCCceeeHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQA 21 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~ 21 (78)
+|.+++|+|++.||..++..
T Consensus 34 ~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 34 FDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HTTSSSSSEEHHHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHh
Confidence 68999999999999988864
No 70
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.69 E-value=0.0048 Score=30.89 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
...+..+|..+|.+++|.|+.+++..++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 445889999999999999999999999853
No 71
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.67 E-value=0.0088 Score=33.32 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHhh
Q psy15326 38 AEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSKM 75 (78)
Q Consensus 38 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 75 (78)
..+..+.+|..++..+.+.++..|..+++..+....+.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~ 131 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDP 131 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCc
Confidence 45568999999999999999999999999865554443
No 72
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.61 E-value=0.0038 Score=30.65 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCC--CCCCceeHHHHHHHhcc
Q psy15326 39 EERAKNIFAKMDE--NNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 39 ~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~ 68 (78)
...+..+|..+|. +++|.|+.+++..++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 3448889999999 89999999999999853
No 73
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.58 E-value=0.0031 Score=29.04 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.2
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 43 KNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 43 ~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
..+|+.+|.+++|.|+.+|+..++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~ 26 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLG 26 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4578899999999999999998875
No 74
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.40 E-value=0.0057 Score=27.05 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+..+|..+|.+++|.|++++|..++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 56788999999999999999999885
No 75
>KOG1955|consensus
Probab=96.39 E-value=0.0073 Score=38.86 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=37.5
Q ss_pred CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 5 DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 5 ~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
|-.|+|+-.-.+.++.+. +..-.++..+|...|.+.||.++..||++.+.
T Consensus 243 Dp~gfisGsaAknFFtKS-------------klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 243 DPHGFISGSAAKNFFTKS-------------KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred CcccccccHHHHhhhhhc-------------cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 445667666666666541 12255689999999999999999999999874
No 76
>KOG2562|consensus
Probab=96.35 E-value=0.025 Score=36.00 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=47.9
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
+.|.+++|.|+..|++-+.+...+.+..... ++-.-+....+++...-+...++|+.++|..+
T Consensus 359 clDld~~G~Lt~~el~~fyeeq~~rm~~~~~--e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEEQLQRMECMGQ--EALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 3688999999999999888876655532211 12234667888999998888999999999984
No 77
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.29 E-value=0.0095 Score=29.57 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcC-CCCCC-ceeHHHHHHHhcc
Q psy15326 39 EERAKNIFAKMD-ENNDG-QLTQDEFLKGCLQ 68 (78)
Q Consensus 39 ~~~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~ 68 (78)
...+..+|..+| .+++| .|+.+|+..++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 455888999997 99999 5999999999963
No 78
>KOG3555|consensus
Probab=96.21 E-value=0.0068 Score=37.28 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=42.4
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
+|.|.+|.++..|++.+-.- .-+..++.+|..+|.-.||.|+-.||+.+..+
T Consensus 259 lD~N~Dl~Ld~sEl~~I~ld---------------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 259 LDTNYDLLLDQSELRAIELD---------------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cccccccccCHHHhhhhhcc---------------CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 47788899999998755432 12667999999999999999999999998764
No 79
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.20 E-value=0.0075 Score=30.08 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHhcCC-CCCCceeHHHHHHHhcc
Q psy15326 41 RAKNIFAKMDE-NNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 41 ~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 68 (78)
.+..+|+.+|. +++|.|+.+|+..++.+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 37889999999 99999999999999976
No 80
>KOG4666|consensus
Probab=96.13 E-value=0.0071 Score=36.96 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=44.3
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELS 73 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 73 (78)
|+.+-||.+..++|..++... +|.. .-.+..+|+..+...+|+|++++|.++....|.+.
T Consensus 305 f~v~eDg~~ge~~ls~ilq~~---lgv~---------~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 305 FSVAEDGISGEHILSLILQVV---LGVE---------VLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred cccccccccchHHHHHHHHHh---cCcc---------eeeccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 566677777777777766653 3422 12267788999999999999999999998877754
No 81
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.99 E-value=0.015 Score=30.44 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
...+..+|..+|.++||.|+.+|+..+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 3448899999999999999999999875
No 82
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.96 E-value=0.012 Score=28.58 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=40.0
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCC----CCCceeHHHHHHHhccCHh
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDEN----NDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~~ 71 (78)
+.+.++.++|..++..-++... . ....+..++..+.++ ..+.++.+.|..++.....
T Consensus 12 ~~~~mt~~~f~~FL~~eQ~~~~--~-------~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 12 DKEYMTAEEFRRFLREEQGEPR--L-------TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp TSSSEEHHHHHHHHHHTSS-TT--S-------SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CCCcCCHHHHHHHHHHHhcccc--C-------cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 5679999999999987332211 1 145566667666443 5799999999999986543
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.86 E-value=0.021 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHHHHHhcC-CCCCC-ceeHHHHHHHhcc
Q psy15326 41 RAKNIFAKMD-ENNDG-QLTQDEFLKGCLQ 68 (78)
Q Consensus 41 ~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~ 68 (78)
.+..+|+.+| .+++| .|+.+|+..++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4788999998 79999 5999999999975
No 84
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.86 E-value=0.02 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCC-CC-CCceeHHHHHHHhcc
Q psy15326 39 EERAKNIFAKMDE-NN-DGQLTQDEFLKGCLQ 68 (78)
Q Consensus 39 ~~~~~~~~~~~d~-~~-~g~i~~~ef~~~~~~ 68 (78)
...+..+|..+|. ++ +|.|+.+|+..++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 3447889999997 87 699999999998753
No 85
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.64 E-value=0.027 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHhcC-CCCCC-ceeHHHHHHHhcc
Q psy15326 42 AKNIFAKMD-ENNDG-QLTQDEFLKGCLQ 68 (78)
Q Consensus 42 ~~~~~~~~d-~~~~g-~i~~~ef~~~~~~ 68 (78)
+..+|..+| .+++| +|+.+|+..++..
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 677799998 78998 5999999999853
No 86
>KOG0751|consensus
Probab=95.26 E-value=0.058 Score=34.96 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=40.2
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.|.-+||.|+++||+.+ +.+ -- .+......+|..+|+.++|.+|++++...+.
T Consensus 83 aD~tKDglisf~eF~af-e~~----lC--------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAF-ESV----LC--------APDALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred hhhcccccccHHHHHHH-Hhh----cc--------CchHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 36667899999999844 331 00 1256678899999999999999999998875
No 87
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.13 E-value=0.15 Score=25.60 Aligned_cols=66 Identities=15% Similarity=0.338 Sum_probs=38.3
Q ss_pred CCCceeeHHHHHHHHHHHHHH---hCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHhh
Q psy15326 5 DGNGVIDIQEMTKIVQAIYDM---LGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSKM 75 (78)
Q Consensus 5 ~~~G~i~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 75 (78)
|++|.++...|..++..+.+. +|+....- ..+..+...|... .....|+.++|..+++.+|..+-+
T Consensus 14 d~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg---~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~lVW 82 (90)
T PF09069_consen 14 DSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFG---YIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQSLVW 82 (90)
T ss_dssp -TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT-----HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TTTTH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCcccccc---CcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCeeeH
Confidence 578999999998888765433 34332211 1355577777765 356789999999999998876544
No 88
>KOG1029|consensus
Probab=94.95 E-value=0.042 Score=37.29 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=41.9
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.|+..+|+++-..-+.++.. .+ .++..+..+|...|.|+||+++.+||+-.+.
T Consensus 204 ~DktrsG~Lsg~qaR~aL~q----S~---------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 204 LDKTRSGYLSGQQARSALGQ----SG---------LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cccccccccccHHHHHHHHh----cC---------CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 46777899998887776654 22 2256688999999999999999999987764
No 89
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=94.55 E-value=0.12 Score=25.68 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=23.2
Q ss_pred HHHHHHHh-cCCCCCC-ceeHHHHHHHhccC
Q psy15326 41 RAKNIFAK-MDENNDG-QLTQDEFLKGCLQD 69 (78)
Q Consensus 41 ~~~~~~~~-~d~~~~g-~i~~~ef~~~~~~~ 69 (78)
.+..+|.. +|.++++ .|+.+||..++...
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e 40 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTE 40 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHh
Confidence 36777877 7787876 99999999999653
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.52 E-value=0.14 Score=32.12 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHhcCCCCCCceeHHHHH
Q psy15326 36 DSAEERAKNIFAKMDENNDGQLTQDEFL 63 (78)
Q Consensus 36 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 63 (78)
.+....+..+|+.+|.+++|.|+.+||.
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 3456778999999999999999999996
No 91
>KOG4251|consensus
Probab=94.37 E-value=0.072 Score=31.65 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=39.4
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
+|.|++|.+|..|+...+-. ..+.. .-..+..++...|.+++.+++.++....
T Consensus 290 IDsNhDGivTaeELe~y~dP----~n~~~-------alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 290 IDSNHDGIVTAEELEDYVDP----QNFRL-------ALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred hhcCCccceeHHHHHhhcCc----hhhhh-------hHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 68899999999999877543 11111 1334777888889999999999998764
No 92
>KOG0041|consensus
Probab=94.04 E-value=0.089 Score=30.33 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
...+|+.+|.+.||.|++.|+..+|.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmE 126 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMME 126 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHH
Confidence 78899999999999999999999985
No 93
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.72 E-value=0.096 Score=26.31 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.7
Q ss_pred ccCCCCceeeHHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAI 22 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~ 22 (78)
.|.|++|.|++.||..++..+
T Consensus 57 LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 57 LDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred hCCCCCCcCcHHHHHHHHHHH
Confidence 488999999999999998875
No 94
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.63 E-value=0.57 Score=24.93 Aligned_cols=60 Identities=10% Similarity=0.238 Sum_probs=38.1
Q ss_pred CceeeHHHHHHHHHHHHHHhCCC-CCCCC------cchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGAC-SSNRP------ADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
+..++..++..++..++...... +.... +...+-.+..++..+|++..|+|+.-+|...+
T Consensus 57 d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 57 DSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 45699999999999887333221 11111 13334447889999999999999998887654
No 95
>KOG4004|consensus
Probab=93.49 E-value=0.023 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+.....+|..+|.++||.|+.+||...+-
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 56688999999999999999999998875
No 96
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=93.31 E-value=0.12 Score=25.67 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.6
Q ss_pred ccCCCCceeeHHHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIY 23 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~ 23 (78)
.|.|++|.|++.||..++..+.
T Consensus 60 ~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 60 LDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred hcCCCCCCCcHHHHHHHHHHHH
Confidence 4789999999999988887753
No 97
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.27 E-value=0.14 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.7
Q ss_pred ccCCCCceeeHHHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIY 23 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~ 23 (78)
+|.+++|.|++++|..++..+.
T Consensus 60 ~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 60 LDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred cCCCCCCcCcHHHHHHHHHHHH
Confidence 5788999999999998888753
No 98
>KOG2562|consensus
Probab=92.43 E-value=0.21 Score=32.07 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
++..|+..|.+++|.++..|..-.+.
T Consensus 353 leYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 353 LEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred hhhheeeeeccCCCcccHHHHHHHHH
Confidence 67788888888888888888776654
No 99
>KOG1029|consensus
Probab=92.43 E-value=0.44 Score=32.79 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=38.9
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+.|+|+...-+.++-. .|. +...+..+|...|.|+||+++..||.-.|.
T Consensus 28 ~~gfitg~qArnfflq----S~L---------P~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 28 GQGFITGDQARNFFLQ----SGL---------PTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred CCCccchHhhhhhHHh----cCC---------ChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 5688888888777654 332 256689999999999999999999987764
No 100
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=92.30 E-value=0.27 Score=17.92 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=12.6
Q ss_pred cCCCCceeeHHHHHHH
Q psy15326 3 DVDGNGVIDIQEMTKI 18 (78)
Q Consensus 3 D~~~~G~i~~~e~~~~ 18 (78)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6799999999988644
No 101
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=90.65 E-value=0.41 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=18.0
Q ss_pred ccCCCCceeeHHHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIY 23 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~ 23 (78)
.|.+++|+++..||..++.-+.
T Consensus 52 aD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 52 ADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp H-SSSSSEEEHHHHHHHHHHHH
T ss_pred hcCCCCCcCCHHHHHHHHHHHH
Confidence 5889999999999998887654
No 102
>KOG4666|consensus
Probab=90.47 E-value=0.79 Score=28.50 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=39.8
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+||.+++|.++. +..+..+.=.-+...+ ...++..|+.++...||.+...+|.-+++
T Consensus 267 LFde~~tg~~D~---re~v~~lavlc~p~~t-------~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 267 LFDEGTTGNGDY---RETVKTLAVLCGPPVT-------PVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred eecCCCCCcccH---HHHhhhheeeeCCCCc-------HHHHHHHHHhcccccccccchHHHHHHHH
Confidence 578888887764 4444432111233332 67799999999999999999988877664
No 103
>KOG2243|consensus
Probab=90.17 E-value=1.1 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.382 Sum_probs=42.3
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
||++|.|.|++.+|...++.- ..- .+.+++-++.....+.+..+++++|+.-...
T Consensus 4066 ydpdgkgiiskkdf~kame~~-----k~y-------tqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4066 YDPDGKGIISKKDFHKAMEGH-----KHY-------TQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cCCCCCccccHHHHHHHHhcc-----ccc-------hhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 789999999999999888751 111 1566778888888888889999999887653
No 104
>KOG0169|consensus
Probab=89.64 E-value=1.6 Score=29.85 Aligned_cols=55 Identities=25% Similarity=0.475 Sum_probs=41.8
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|++++|.+++.+...++..+.-.++ ...+..+|+..+..+++++..++|.+...
T Consensus 145 ad~~~~~~~~~~~~~~~~~~~n~~l~-----------~~~~~~~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 145 ADKNKNGHMSFDEVLDLLKQLNVQLS-----------ESKARRLFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred HccccccccchhhHHHHHHHHHHhhh-----------HHHHHHHHHHHHhhccceehHHHHHHHHH
Confidence 57888999999888888776422222 55577888888888899999998888764
No 105
>KOG0751|consensus
Probab=87.77 E-value=1.6 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
+.-+-...|..+||-|||+||+.+
T Consensus 76 v~Lla~iaD~tKDglisf~eF~af 99 (694)
T KOG0751|consen 76 VRLLASIADQTKDGLISFQEFRAF 99 (694)
T ss_pred HHHHHhhhhhcccccccHHHHHHH
Confidence 333335568889999999999986
No 106
>KOG0042|consensus
Probab=87.61 E-value=1 Score=30.02 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=42.6
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+|.++.|+++..+....++. .+.. +.++.+++..+..|.+-+|.+...||.+++.
T Consensus 602 lD~~k~~~~~i~~v~~vlk~----~~~~-------~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 602 LDADKKAYQAIADVLKVLKS----ENVG-------WDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred hcchHHHHHHHHHHHHHHHH----hcCC-------CCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 46666777777777777776 3322 3377789999999999999999999999875
No 107
>KOG0040|consensus
Probab=87.60 E-value=1.4 Score=32.85 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=35.2
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
+.|++.+|+|+..++..+|-+- -..+. .. ...+...|+..+. +..+|+.++....+
T Consensus 2304 ~vDP~r~G~Vsl~dY~afmi~~---ETeNI-----~s-~~eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2304 LVDPNRDGYVSLQDYMAFMISK---ETENI-----LS-SEEIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred hcCCCCcCcccHHHHHHHHHhc---ccccc-----cc-hHHHHHHHHHhhc-CCccccHHHHHhcC
Confidence 3689999999999999988651 11111 11 2256777777776 55566666554443
No 108
>KOG1954|consensus
Probab=87.02 E-value=1.2 Score=28.49 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
...+-++|+..|.+.||-++-+||.-.
T Consensus 476 nsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 476 NSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 455889999999999999999999744
No 109
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=85.63 E-value=1.4 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.645 Sum_probs=18.9
Q ss_pred CccCCCCceeeHHHHHHHHHH
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQA 21 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~ 21 (78)
+||...+.+|+.+++..+++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 589999999999999999875
No 110
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.06 E-value=2.8 Score=21.12 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 44 NIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 44 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
..|+..+......++.+|+.+++.++|.+++
T Consensus 61 ~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 61 TPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred chHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 4555555544568899999999999998764
No 111
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=84.03 E-value=2.5 Score=20.20 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=30.1
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 69 (78)
+-++++..+..++... ++ ...+..+...++.-..++|+.++|++.++..
T Consensus 6 sp~~~F~~L~~~l~~~---l~-----------~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LP-----------PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHH---CC-----------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3456666666555542 33 2334444444444457899999999998753
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=83.50 E-value=5.5 Score=21.83 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 5 DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 5 ~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.+...++...|..+++.. +.++...+ ...++.+|..+-..+..+|++++|...+.
T Consensus 14 ~~~~~m~~~~F~Kl~kD~-~i~d~k~t-------~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDC-GIIDKKLT-------STDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp STSSEEEHHHHHHHHHHT-SS--SSS--------HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHc-CCCCCCCc-------hHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 344578888888888762 22222222 55688999887666677899999999885
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=81.54 E-value=6.6 Score=26.45 Aligned_cols=52 Identities=12% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+.|.+++.+|..+++.+. ... ...+..+..+|..+-. +.+.++.++|..++.
T Consensus 13 ~~g~l~f~~f~~f~~~~k-~~~--------~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~ 64 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFK-ITE--------AEPPDDVKDVFCKFSV-GGGHMGADQLRRFLV 64 (599)
T ss_pred cCCCcCHHHHHHHHHHhc-ccc--------CCChHHHHHHHHHHhC-CCCccCHHHHHHHHH
Confidence 458999999988887641 111 0125669999998864 446899999999986
No 114
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=80.25 E-value=3.6 Score=21.72 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
++..+.+|..+-.+..|++.+.||..-+.
T Consensus 6 DeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 6 DEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred HHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 45689999999999999999999998875
No 115
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=80.14 E-value=2.2 Score=21.78 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=33.3
Q ss_pred eeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 10 IDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 10 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
++.+++..++.. .|. ...-..-...|+....+....++.+++..++..+|.+++
T Consensus 36 ~s~~eL~~~l~~----~g~-------~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 36 LDAATLERWLAK----VGW-------ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CCHHHHHHHHHH----hCh-------HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 677788877775 331 011111344566555443356888999999998888763
No 116
>KOG0035|consensus
Probab=78.38 E-value=7.1 Score=27.54 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=43.8
Q ss_pred cCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHh
Q psy15326 3 DVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 3 D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 71 (78)
++...|..+.+++..++.. .|.+.. +.....+.+-.+....|.+..|.+++.+|...+.+..+
T Consensus 757 ~~~d~~aa~~e~~~~~Lms----lg~~~e--~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 757 DKIDGGAASPEELLRCLMS----LGYNTE--EEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHhhcccCCHHHHHHHHHh----cCcccc--hhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 4445567888888888877 555432 12333445667777788888899999999999875444
No 117
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.34 E-value=5.1 Score=20.65 Aligned_cols=56 Identities=11% Similarity=0.193 Sum_probs=33.1
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
-.+.+++..++.. .|... ...-..-...|+....+. ..++.+++.+++..+|.+++
T Consensus 36 ~~~~~el~~~~~~----~~~~~-----~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 36 PLTKEELKEILSL----TENGV-----EDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred cchHHHHHHHHHH----hcCCH-----HHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 3566777777775 32110 011111344566555443 56889999999999888764
No 118
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=76.82 E-value=3.9 Score=21.03 Aligned_cols=53 Identities=11% Similarity=0.252 Sum_probs=33.1
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHH---HHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEER---AKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
-++.+++..++.. .|.. .... -...|+....+. ..++.+++.+++..+|.+++
T Consensus 35 ~~t~~el~~~l~~----~~~~--------~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 35 PPTAAELRELLAK----LGIS--------PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIE 90 (112)
T ss_pred CcCHHHHHHHHHH----cCCC--------HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCccc
Confidence 3677788777776 3321 1222 233455544443 57889999999998888764
No 119
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=75.69 E-value=12 Score=21.17 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=29.1
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
+.+.+|..|+..+++.-.. ...........-++..+|... .+.+|.++.++.+.++
T Consensus 109 ~~d~LT~~E~~~m~~~nr~----~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 109 GPDALTLRELWRMLKGNRN----ANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CCCCcCHHHHHHHHHhccc----cCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 3456777777666664110 111111111233355555554 4568899988877765
No 120
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.19 E-value=8.6 Score=19.15 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=30.3
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
||.++..|...+-.-+.+.++.+ ......++..+........+..+|.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLD---------AEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcC---------HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 68899888876665544445532 23344444444444445566767766654
No 121
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=74.88 E-value=6.2 Score=17.39 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCH
Q psy15326 12 IQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDE 70 (78)
Q Consensus 12 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 70 (78)
..+|..+..-+.+..|.....-........+...+... |.=++.+|...+..++
T Consensus 2 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~ 55 (57)
T PF03705_consen 2 DAEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDP 55 (57)
T ss_dssp HHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCC
Confidence 35666677766677887765333344444455555554 3457888888877654
No 122
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=73.98 E-value=1.4 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.323 Sum_probs=32.8
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
-++.+++..++.. .|.... ..-..-...|+..+......++.+++..++..+|.+++
T Consensus 32 p~s~~el~~~l~~----~~~~~~-----~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 32 PLSREELRELLSK----LGNGPD-----DLINTRSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp ---HHHHHHHHHH----HTSSGG-----GGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred CCCHHHHHHHHHH----hcccHH-----HHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 3778888888877 342111 00011234555555333468899999999999998764
No 123
>PRK10026 arsenate reductase; Provisional
Probab=73.98 E-value=4.3 Score=22.08 Aligned_cols=55 Identities=15% Similarity=0.252 Sum_probs=34.4
Q ss_pred eeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 10 IDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 10 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
++.+++..++.. .|... ...-......|+....+. ..++.+++..++..+|.+++
T Consensus 39 pt~~eL~~~l~~----~g~~~-----~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 39 PTRDELVKLIAD----MGISV-----RALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred cCHHHHHHHHHh----CCCCH-----HHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHhCcccee
Confidence 678888888886 44211 111112345666665444 35789999999988887653
No 124
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.84 E-value=6.9 Score=20.83 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=33.8
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
-++.+++..++.. .+... ...-..-...|+..+.+. ..++.+++..++..+|.+++
T Consensus 36 ~~s~~el~~~l~~----~~~g~-----~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 36 SMTVDELKSILRL----TEEGA-----TEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred cCCHHHHHHHHHH----cCCCH-----HHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 3677888888776 22111 011111345566665544 45788999999988887764
No 125
>KOG0169|consensus
Probab=68.70 E-value=23 Score=24.69 Aligned_cols=30 Identities=30% Similarity=0.456 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 38 AEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 38 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
...++..+|..+|.+++|.+++.+-..++.
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~ 163 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLK 163 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHH
Confidence 355689999999999999999998887764
No 126
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=68.06 E-value=7.5 Score=15.50 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=13.9
Q ss_pred CCceeeHHHHHHHHHHH
Q psy15326 6 GNGVIDIQEMTKIVQAI 22 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~ 22 (78)
++|.|+.+++..+..++
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 36889999999888775
No 127
>PLN02228 Phosphoinositide phospholipase C
Probab=67.99 E-value=26 Score=23.64 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=36.4
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCC----CCCceeHHHHHHHhccC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDEN----NDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 69 (78)
++.++.++|..++...++... ...+.+..++..+... ..|.++.+.|..++...
T Consensus 36 ~~~~t~~~~~~FL~~~Q~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 36 NGKMSFDELLRFVSEVQGERH---------AGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCccCHHHHHHHHHHhcCCcc---------CCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 357999999999987533211 1134466677666443 34679999999998754
No 128
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=67.05 E-value=16 Score=18.99 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=39.1
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCC----CCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSS----NRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
+||...+-+||.+++..+++. |.... ....+.-+..+-+++-.-...+..-++.+=+.+++.
T Consensus 11 LYDT~tS~YITLedi~~lV~~-----g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr 76 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE-----GREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIR 76 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC-----CCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 588999999999999999875 33221 112233355566666555556666666665555554
No 129
>KOG4347|consensus
Probab=66.96 E-value=15 Score=25.15 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=34.4
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEF 62 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 62 (78)
+|.+++|.|++.++...+..+. .| ..-+.+.-+|+.+|+..+ ..+.++.
T Consensus 564 ~D~s~~g~Ltf~~lv~gL~~l~--~~---------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 564 LDDSMTGLLTFKDLVSGLSILK--AG---------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cccCCcceeEHHHHHHHHHHHH--hh---------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 6788999999999888877642 11 113447778888888877 6666654
No 130
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=66.76 E-value=6.9 Score=20.86 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
-++.+++..++.. .|... ...-..-...|+..+.+. ..++.+++..++..+|.+++
T Consensus 36 ~~s~~eL~~~l~~----~~~~~-----~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 36 PLTKEEILAILTK----TENGI-----ESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILK 91 (132)
T ss_pred CCCHHHHHHHHHH----hCCCH-----HHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcccee
Confidence 3677888888876 22111 000111344555555333 56788999999988887764
No 131
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=65.37 E-value=13 Score=19.67 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=31.8
Q ss_pred eeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 10 IDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 10 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
++.+++..++.. .|. ...-..-...|+..+.+ ...++.++...++..+|.+++
T Consensus 38 ~t~~eL~~~l~~----~g~-------~~lin~~~~~~r~l~~~-~~~ls~~e~i~lm~~~P~LIK 90 (126)
T TIGR01616 38 WHADTLRPYFGN----KPV-------GSWFNRAAPRVKSGEVN-PDSIDEASALALMVSDPLLIR 90 (126)
T ss_pred cCHHHHHHHHHH----cCH-------HHHHhccchHhhhCCCC-cccCCHHHHHHHHHhCcCeEe
Confidence 677888888776 231 00111123356555533 356788999999988877653
No 132
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=65.33 E-value=11 Score=19.41 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=33.0
Q ss_pred eeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 9 VIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 9 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
-++.+++..++.. .|...- ...-..-...|+....+. ..++.+++..++..+|.+++
T Consensus 35 p~t~~el~~~l~~----~g~~~~----~~lin~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~Lik 91 (114)
T TIGR00014 35 PPTKSELEAIFAK----LGLTVA----REMIRTKEALYKELGLSD-PNLSDQELLDAMVAHPILLE 91 (114)
T ss_pred CcCHHHHHHHHHH----cCCchH----HHHHhcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCccc
Confidence 3677888877776 342110 001111234455544332 46788999999998888764
No 133
>KOG1707|consensus
Probab=64.17 E-value=11 Score=25.53 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhccC
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 69 (78)
.+.+..+|..+|.++||.++-+|+..+...-
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 3447889999999999999999998887643
No 134
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=63.89 E-value=6 Score=18.97 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=19.0
Q ss_pred CCCceeHHHHHHHhccCHhHHhhc
Q psy15326 53 NDGQLTQDEFLKGCLQDEELSKML 76 (78)
Q Consensus 53 ~~g~i~~~ef~~~~~~~~~~~~~~ 76 (78)
..|++..+||..++..-|.+.+.+
T Consensus 27 ~~Gkv~~ee~n~~~e~~p~~~~~l 50 (75)
T TIGR02675 27 ASGKLRGEEINSLLEALPGALQAL 50 (75)
T ss_pred HcCcccHHHHHHHHHHhHHHHHHH
Confidence 468999999999988877766543
No 135
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=63.08 E-value=17 Score=18.84 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=31.6
Q ss_pred eeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 10 IDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 10 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
++.+++..++.. .|.. ..-..-...|+....+. ..++.++..+++..+|.+++
T Consensus 37 ~s~~eL~~~l~~----~g~~-------~l~n~~~~~~r~~~~~~-~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 37 WTAETLRPFFGD----LPVA-------EWFNPAAPRVKSGEVVP-EALDEEEALALMIADPLLIR 89 (113)
T ss_pred CCHHHHHHHHHH----cCHH-------HHHhcccHHHHhcCCCc-cCCCHHHHHHHHHhCcceee
Confidence 677788887775 3310 01111244555443332 46788999999988887653
No 136
>KOG3555|consensus
Probab=62.19 E-value=9.4 Score=24.20 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 38 AEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 38 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
-...+..||..+|.+.|+.++..|...+..
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 345588999999999999999999998865
No 137
>KOG0998|consensus
Probab=61.66 E-value=1.9 Score=30.00 Aligned_cols=52 Identities=29% Similarity=0.477 Sum_probs=39.4
Q ss_pred cCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 3 DVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 3 D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
|.+.+|.|+..+.+.++.. .|. ....+...|...|..+.|.+++.+|.-.+.
T Consensus 293 d~~~dG~I~s~~~~~~f~~----~gl---------~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 293 DKDNDGSISSNEARNIFLP----FGL---------SKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred cccCCCccccccccccccc----CCC---------ChhhhhhhhhhcchhccCcccccccchhhh
Confidence 5667788887777666654 332 255689999999999999999998876654
No 138
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=61.49 E-value=17 Score=17.20 Aligned_cols=31 Identities=16% Similarity=0.458 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhc
Q psy15326 12 IQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKM 49 (78)
Q Consensus 12 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (78)
..+++.++..+.+..|.... ++.++.+|..|
T Consensus 42 a~~L~~A~~~L~~ItG~~~~-------ediLd~IFs~F 72 (73)
T PF12631_consen 42 AEDLREALESLGEITGEVVT-------EDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHCTSS---------HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHhh
Confidence 34555555555555554332 55566666543
No 139
>KOG4347|consensus
Probab=59.59 E-value=16 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.....++|+.+|.+.+|.+++.+++..+.
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~ 582 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLS 582 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHH
Confidence 34478999999999999999999998874
No 140
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=58.40 E-value=20 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=5.7
Q ss_pred HHHHHHHHhcC
Q psy15326 40 ERAKNIFAKMD 50 (78)
Q Consensus 40 ~~~~~~~~~~d 50 (78)
..+..+++.+|
T Consensus 30 ~vl~~LL~lY~ 40 (65)
T PF10440_consen 30 PVLKNLLKLYD 40 (65)
T ss_pred HHHHHHHHHHc
Confidence 33555555554
No 141
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=58.21 E-value=7 Score=19.98 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=11.6
Q ss_pred CCCceeHHHHHHHhccCHhH
Q psy15326 53 NDGQLTQDEFLKGCLQDEEL 72 (78)
Q Consensus 53 ~~g~i~~~ef~~~~~~~~~~ 72 (78)
.||.|+.++|.+.|...|..
T Consensus 3 ~d~~~~~~~F~~~W~sl~~~ 22 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLPDS 22 (114)
T ss_dssp TT----HHHHHHHHHHS-GG
T ss_pred CCCccCHHHHHHHHHhCCcc
Confidence 46899999999999866543
No 142
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=58.20 E-value=17 Score=19.33 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHhccCHhHHh
Q psy15326 43 KNIFAKMDENNDGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 43 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 74 (78)
...|+....+. ..++.+++..++..+|.+++
T Consensus 61 ~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 61 SKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred cHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 44566655443 46788999999988887653
No 143
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.36 E-value=13 Score=19.00 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHhcCCCCC-CceeHHHHHHHhccCHhHHh
Q psy15326 44 NIFAKMDENND-GQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 44 ~~~~~~d~~~~-g~i~~~ef~~~~~~~~~~~~ 74 (78)
..|+....+.. ..++.++..+++..+|.+++
T Consensus 61 ~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 61 KSYRELGLKDKLPSLSEEEALELLSSDGMLIK 92 (111)
T ss_pred chHHhCCcccccccCCHHHHHHHHHhCcCeee
Confidence 35555554432 35688899999988887663
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=55.79 E-value=32 Score=18.71 Aligned_cols=47 Identities=6% Similarity=0.132 Sum_probs=26.9
Q ss_pred ceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCC-------CCCceeHHHHHHHhc
Q psy15326 8 GVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDEN-------NDGQLTQDEFLKGCL 67 (78)
Q Consensus 8 G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~~~ 67 (78)
+.|+..||.+.-+-+ .+. ...++.+++.+..+ ..+.|+++-|...|.
T Consensus 6 ~~lsp~eF~qLq~y~--eys-----------~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--EYS-----------TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp S-S-HHHHHHHHHHH--HH---------------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eccCHHHHHHHHHHH--HHH-----------HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 578888888776652 111 22366666666432 356899999999885
No 145
>PLN02222 phosphoinositide phospholipase C 2
Probab=54.27 E-value=49 Score=22.51 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=34.7
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCC-CCCCceeHHHHHHHhccC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDE-NNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 69 (78)
.+.++.++|..++...++... . ..+.+..++..+.. ...+.++.+.|..++...
T Consensus 37 ~~~mt~~~l~~FL~~~Q~~~~--~-------~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 37 NGVMTVDHLHRFLIDVQKQDK--A-------TREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CCCcCHHHHHHHHHHhcCCcc--C-------CHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 468999999999987542211 1 13334555554422 245679999999999754
No 146
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.47 E-value=31 Score=17.77 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHh----cCCCCCCceeHHHHHHHhcc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAK----MDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~ 68 (78)
.+|+++.++|..++-. .. ..+.+..+|.. .... ...|+.+|+..++..
T Consensus 41 ~dG~L~rs~Fg~CIGM-------~d-------SkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 41 KDGLLPRSDFGECIGM-------KD-------SKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp BTTBEEGGGHHHHHT---------S--------HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred cCCcccHHHHHHhcCC-------cc-------cHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 3789999999877653 11 13334444433 3322 578999999888753
No 147
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=52.15 E-value=29 Score=19.11 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=19.9
Q ss_pred cCCCCceeeHHHHHHHHHHHHHHhC
Q psy15326 3 DVDGNGVIDIQEMTKIVQAIYDMLG 27 (78)
Q Consensus 3 D~~~~G~i~~~e~~~~~~~~~~~~~ 27 (78)
|.++.+|+|.+++++++=.+.+.++
T Consensus 79 e~~rg~Y~TiSeLKT~vy~i~q~l~ 103 (148)
T PF12486_consen 79 EEQRGKYMTISELKTAVYQIQQSLN 103 (148)
T ss_pred HHhcCCceeHHHHHHHHHHHHHHhc
Confidence 5566778999999999988766664
No 148
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.50 E-value=44 Score=18.95 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=34.3
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCC----cchHHHH-HHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRP----ADSAEER-AKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
+|+..-+-+|+.+++..+++. |+....-+ ++..... ...+|..-.+.+..-++..=+++++
T Consensus 20 LYnT~TSTYVTL~dla~mVk~-----gedF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~llpi~fLrQlI 85 (193)
T COG5394 20 LYNTGTSTYVTLEDLAQMVKE-----GEDFRVQDAKSGEDITHSVLTQIIFEEENKGGQNLLPISFLRQLI 85 (193)
T ss_pred hcccCCceeeeHHHHHHHHhc-----CCceEEeeccccchhhHHHHHHHHHHHhccCCCccccHHHHHHHH
Confidence 356666779999999999885 33222111 1222333 4555666665666666655444444
No 149
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=48.44 E-value=5.3 Score=15.84 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=12.3
Q ss_pred HHHHhcCCCCCCceeHHH
Q psy15326 44 NIFAKMDENNDGQLTQDE 61 (78)
Q Consensus 44 ~~~~~~d~~~~g~i~~~e 61 (78)
.++..-|.+++-.|+.++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 345566888888887653
No 150
>PTZ00056 glutathione peroxidase; Provisional
Probab=48.19 E-value=48 Score=18.87 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=20.2
Q ss_pred ceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCC
Q psy15326 8 GVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDG 55 (78)
Q Consensus 8 G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g 55 (78)
|.++.+++...+..+. . ....+.+|+.+|.-+..
T Consensus 163 g~~~~~~l~~~I~~ll---~-----------~~~~~~~~~~~~~~~~~ 196 (199)
T PTZ00056 163 PRTEPLELEKKIAELL---G-----------VKDYQELFKNYDKLHPE 196 (199)
T ss_pred CCCCHHHHHHHHHHHH---H-----------HHHHHHHHHhhhhcCcc
Confidence 4566667666666542 2 23367778888765543
No 151
>KOG2243|consensus
Probab=47.26 E-value=15 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=22.1
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 43 KNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 43 ~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
...|+.+|+++.|.|+..+|.+.+.
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame 4084 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAME 4084 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHh
Confidence 4568889999999999999999885
No 152
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=46.70 E-value=16 Score=14.27 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=10.5
Q ss_pred CCceeHHHHHHHh
Q psy15326 54 DGQLTQDEFLKGC 66 (78)
Q Consensus 54 ~g~i~~~ef~~~~ 66 (78)
.|.||-+||.+.-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 6899999997653
No 153
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=46.68 E-value=8.5 Score=19.84 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHHhcCCCC-CCceeHHHHHHHhccCHhHHh
Q psy15326 45 IFAKMDENN-DGQLTQDEFLKGCLQDEELSK 74 (78)
Q Consensus 45 ~~~~~d~~~-~g~i~~~ef~~~~~~~~~~~~ 74 (78)
.|+...... ...++.+++..++..+|.+++
T Consensus 62 ~~k~l~~~~~~~~ls~~e~~~~i~~~p~Lik 92 (117)
T TIGR01617 62 SYRALNTSNTFLDLSDKEALELLAEDPALLR 92 (117)
T ss_pred chhhCCchhhcccCCHHHHHHHHHhCcceEe
Confidence 444444322 356889999999998887753
No 154
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=44.97 E-value=63 Score=20.17 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=8.0
Q ss_pred CceeeHHHHHHHHHH
Q psy15326 7 NGVIDIQEMTKIVQA 21 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~ 21 (78)
+|.+|.+|-...+++
T Consensus 300 ~G~itReeal~~v~~ 314 (343)
T TIGR03573 300 SGRITREEAIELVKE 314 (343)
T ss_pred cCCCCHHHHHHHHHH
Confidence 455555555555544
No 155
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=44.62 E-value=70 Score=19.31 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=29.2
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
||.|+..|+. .++.++..++... ..+..+..+|+.. .....++++|.+.+.
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~------~~r~~a~~lf~~~---k~~~~~l~~~~~~~~ 119 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHG------EARRAAQQAFREG---KEPDFPLREKLRQFR 119 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCH------HHHHHHHHHHHHh---cccCCCHHHHHHHHH
Confidence 6889988888 6666655555431 1122345555543 233466777776654
No 156
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=44.08 E-value=28 Score=20.15 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=16.6
Q ss_pred ccCCCCceeeHHHHHHHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAI 22 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~ 22 (78)
+|.|++|.++.+|+..+...+
T Consensus 59 ~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 59 LDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred hhhcccCCCCHHHHHHHHHHH
Confidence 578888999988888777654
No 157
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=42.71 E-value=46 Score=16.66 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=1.9
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHhccCHh
Q psy15326 43 KNIFAKMDENNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 43 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 71 (78)
..+.......+.++|+.++|.-++++++.
T Consensus 41 ~~A~~~a~~rg~~~i~~eDl~F~lR~D~~ 69 (93)
T PF02269_consen 41 QEAMEVAQRRGSKKIKVEDLLFLLRKDPK 69 (93)
T ss_dssp HHHHC------------------------
T ss_pred HHHHHHHhccccCcCcHHHHHHHHhcCHH
Confidence 33334445556789999999999987765
No 158
>COG5562 Phage envelope protein [General function prediction only]
Probab=41.11 E-value=21 Score=19.41 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.9
Q ss_pred HhcCCCCCCceeHHHHHHHh
Q psy15326 47 AKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 47 ~~~d~~~~g~i~~~ef~~~~ 66 (78)
.....+..|..+++||+.-+
T Consensus 79 ~al~~~qsGqttF~ef~~~l 98 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSAL 98 (137)
T ss_pred HHHHHHhcCCccHHHHHHHH
Confidence 34456788999999999876
No 159
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=40.28 E-value=58 Score=17.08 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=30.1
Q ss_pred eeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHhHH
Q psy15326 10 IDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEELS 73 (78)
Q Consensus 10 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 73 (78)
++.+++..++.. .|... ...-..-...|+..+ .....++-++....+..++.++
T Consensus 38 ~s~~eL~~~l~~----~g~~~-----~~li~t~~~~~r~L~-~~~~~~~~~~~~~~i~~~~~Li 91 (117)
T COG1393 38 PSREELKKILSK----LGDGV-----EELINTRGTTYRELN-LDKEDLSDEELIEALLENPSLI 91 (117)
T ss_pred CCHHHHHHHHHH----cCccH-----HHHHHhccchHHHcC-CcccccChHHHHHHHHhChhhc
Confidence 677888888776 34211 011111345666676 3334666677777776666554
No 160
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=39.90 E-value=35 Score=14.53 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=19.8
Q ss_pred HHHHHHhc-CCCC-CCceeHHHHHHHhc-cCHhHH
Q psy15326 42 AKNIFAKM-DENN-DGQLTQDEFLKGCL-QDEELS 73 (78)
Q Consensus 42 ~~~~~~~~-d~~~-~g~i~~~ef~~~~~-~~~~~~ 73 (78)
+..+|..+ ..++ ..+++..||..++. .-|.++
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~fl 42 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEKELPNFL 42 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHHHHHHHh
Confidence 34445444 3444 46899999999986 344433
No 161
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=38.20 E-value=30 Score=14.41 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=8.8
Q ss_pred CceeeHHHHHHHH
Q psy15326 7 NGVIDIQEMTKIV 19 (78)
Q Consensus 7 ~G~i~~~e~~~~~ 19 (78)
-|.||.+|+..+.
T Consensus 24 ~g~IT~eey~eIT 36 (40)
T PF09693_consen 24 AGWITKEEYKEIT 36 (40)
T ss_pred cCeECHHHHHHhh
Confidence 3678888776553
No 162
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=38.04 E-value=56 Score=16.32 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
++|.|+.+++..+... . .+++.+.+++... ...|..-.+-|.+.+..
T Consensus 26 ~n~~it~E~y~~V~a~------~--------T~qdkmRkLld~v--~akG~~~k~~F~~iL~e 72 (85)
T cd08324 26 KNDYFSTEDAEIVCAC------P--------TQPDKVRKILDLV--QSKGEEVSEYFLYLLQQ 72 (85)
T ss_pred ccCCccHHHHHHHHhC------C--------CCHHHHHHHHHHH--HhcCchHHHHHHHHHHH
Confidence 4678888887655443 1 1244555655552 33455666667766653
No 163
>PRK10853 putative reductase; Provisional
Probab=37.72 E-value=23 Score=18.50 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=11.2
Q ss_pred eHHHHHHHhccCHhHH
Q psy15326 58 TQDEFLKGCLQDEELS 73 (78)
Q Consensus 58 ~~~ef~~~~~~~~~~~ 73 (78)
+.++...++..+|.++
T Consensus 75 ~~~e~~~ll~~~P~Li 90 (118)
T PRK10853 75 DAASAAALMLEQPAII 90 (118)
T ss_pred CHHHHHHHHHhCcCee
Confidence 4577888887777655
No 164
>KOG0039|consensus
Probab=37.09 E-value=76 Score=21.82 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=44.5
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhccCHh
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 71 (78)
++|.++.+++..++........... -.+........++...|.++.|.+..+++..++...+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~ 92 (646)
T KOG0039|consen 30 GDGKLTEEEVRELIMSSISANWLSL---IKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPT 92 (646)
T ss_pred hcCCccHHHHHHHHHHHHHhhhhhh---hhhhhhHHHHHhhhhccccccceeeecchhHHHHhchH
Confidence 6788999999988887654443111 12233455777888899999999998888888775554
No 165
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=36.89 E-value=98 Score=18.77 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=32.9
Q ss_pred eeeHHHHHHHHHH-HHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 9 VIDIQEMTKIVQA-IYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 9 ~i~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
.+++.++..++.. +....|..++ ++...-..++++..-....+..|+|..|++--
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~---~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke~ 233 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLT---DEQLQYLAEKLFGQNSSYNNMLISWSQFCKEN 233 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS-------HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTSB
T ss_pred cccHHHHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHhCCcccCCCceeEHHHhhhcc
Confidence 5889999999875 3334453332 33334445666665555567899999998753
No 166
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=36.08 E-value=35 Score=13.44 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=7.8
Q ss_pred eeHHHHHHHHHH
Q psy15326 10 IDIQEMTKIVQA 21 (78)
Q Consensus 10 i~~~e~~~~~~~ 21 (78)
|+.+|++.++..
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 678888888764
No 167
>KOG0998|consensus
Probab=35.35 E-value=20 Score=25.29 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=41.2
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
.|..+.|.|+..+...++.. .|. ....+-++|...|..+.|......|...++
T Consensus 20 ~d~~~~G~i~g~~a~~f~~~----s~L---------~~qvl~qiws~~d~~~~g~l~~q~f~~~lr 72 (847)
T KOG0998|consen 20 ADPQGDGRITGAEAVAFLSK----SGL---------PDQVLGQIWSLADSSGKGFLNRQGFYAALR 72 (847)
T ss_pred cCcccCCcccHHHhhhhhhc----ccc---------chhhhhccccccccccCCccccccccccch
Confidence 46778899999888877776 332 255678888999999989999888887764
No 168
>KOG3442|consensus
Probab=33.64 E-value=83 Score=16.99 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=30.6
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeH
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQ 59 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 59 (78)
.|.||.+|-..++.- .. ..+.+..+...+.+|..-|+...|.+-.
T Consensus 53 ~~~iTlqEa~qILnV-----~~---~ln~eei~k~yehLFevNdkskGGSFYL 97 (132)
T KOG3442|consen 53 NGKITLQEAQQILNV-----KE---PLNREEIEKRYEHLFEVNDKSKGGSFYL 97 (132)
T ss_pred cccccHHHHhhHhCC-----CC---CCCHHHHHHHHHHHHhccCcccCcceee
Confidence 466888888777653 11 2234455666889999999987776543
No 169
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=33.38 E-value=27 Score=15.64 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.3
Q ss_pred CCCceeHHHHHHHh
Q psy15326 53 NDGQLTQDEFLKGC 66 (78)
Q Consensus 53 ~~g~i~~~ef~~~~ 66 (78)
.+|+|+.+||-.-+
T Consensus 20 a~GrL~~~Ef~~R~ 33 (53)
T PF08044_consen 20 AEGRLSLDEFDERL 33 (53)
T ss_pred HCCCCCHHHHHHHH
Confidence 46999999997654
No 170
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=32.59 E-value=28 Score=18.18 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=12.1
Q ss_pred CceeeHHHHHHHHHHHHHHhC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLG 27 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~ 27 (78)
||.++.+|...+...+....+
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~ 57 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFG 57 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGC
T ss_pred CCCCCHHHHHHHHHHHHHhhC
Confidence 688888888766665433344
No 171
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=32.46 E-value=64 Score=16.61 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=15.9
Q ss_pred CceeeHHHHHHHHHHHHHHh
Q psy15326 7 NGVIDIQEMTKIVQAIYDML 26 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~ 26 (78)
+|+|+.+||..++..+...+
T Consensus 27 ~~~is~~ef~~iI~~IN~~l 46 (118)
T PF10256_consen 27 SGYISPEEFEEIINTINQIL 46 (118)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 58899999999998865443
No 172
>PLN02230 phosphoinositide phospholipase C 4
Probab=32.14 E-value=1.7e+02 Score=20.19 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=33.3
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcC---CCCCCceeHHHHHHHhccC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMD---ENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~g~i~~~ef~~~~~~~ 69 (78)
.+.++.++|..++...++.-. ..........+..+..... .-+.+.++.+.|..++...
T Consensus 42 ~~~mt~~~l~~FL~~~Q~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 42 DAHMSPEQLQKLMAEEGGGEG----ETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCccCHHHHHHHHHHhCCCcc----cCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 478999999999987431111 0011112233333333322 1234579999999988753
No 173
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=30.87 E-value=36 Score=17.25 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=12.2
Q ss_pred CCceeHHHHHHHhc
Q psy15326 54 DGQLTQDEFLKGCL 67 (78)
Q Consensus 54 ~g~i~~~ef~~~~~ 67 (78)
+|.|+.|||..-+.
T Consensus 37 ~~~i~~EeF~~~Lq 50 (92)
T smart00549 37 NGTITAEEFTSRLQ 50 (92)
T ss_pred hCCCCHHHHHHHHH
Confidence 58999999998875
No 174
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=30.49 E-value=71 Score=15.19 Aligned_cols=27 Identities=7% Similarity=0.261 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 41 RAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 41 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
.+...|+.. .++.+.|+.+++.+.+..
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l~p 33 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSLTP 33 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS-C
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHcCc
Confidence 366677777 566788888888887754
No 175
>KOG1265|consensus
Probab=30.48 E-value=1.6e+02 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhc---cCHhHHhh
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCL---QDEELSKM 75 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~---~~~~~~~~ 75 (78)
+-.++.+|..+.-+..-.++.+++..++. ++|-+-++
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNei 259 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEI 259 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhh
Confidence 34578899998888888999999999986 44444443
No 176
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=30.41 E-value=37 Score=18.66 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=9.4
Q ss_pred hcCCCCCCceeHHHHHHH
Q psy15326 48 KMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 48 ~~d~~~~g~i~~~ef~~~ 65 (78)
.-.....|.|+.+||+..
T Consensus 19 ~S~F~etG~iTPeEFV~A 36 (145)
T PF03986_consen 19 ESKFKETGVITPEEFVAA 36 (145)
T ss_dssp ---HHHHS---HHHHHHH
T ss_pred cccccccceeCHHHHHHh
Confidence 333445799999999975
No 177
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=30.22 E-value=43 Score=17.12 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.2
Q ss_pred CCceeHHHHHHHhc
Q psy15326 54 DGQLTQDEFLKGCL 67 (78)
Q Consensus 54 ~g~i~~~ef~~~~~ 67 (78)
+|.|+.+||..-+.
T Consensus 38 ~~~i~~EeF~~~Lq 51 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQ 51 (96)
T ss_dssp TTSS-HHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 58999999998875
No 178
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=28.28 E-value=90 Score=15.68 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=17.0
Q ss_pred CCCCceeHHHHHHHhccCHh
Q psy15326 52 NNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 52 ~~~g~i~~~ef~~~~~~~~~ 71 (78)
.+.++++.++|.-+++++|.
T Consensus 50 ~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 50 RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred cCCCCCCHHHHHHHHhcCHH
Confidence 46788999999999988775
No 179
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=27.33 E-value=54 Score=15.06 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=11.6
Q ss_pred ceeHHHHHHHhccCHh
Q psy15326 56 QLTQDEFLKGCLQDEE 71 (78)
Q Consensus 56 ~i~~~ef~~~~~~~~~ 71 (78)
.|+.+.|.+++.++|+
T Consensus 76 ~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 76 RIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEHHHHHHHHHHSHH
T ss_pred EEeHHHHHHHHHhCcC
Confidence 5777888887776663
No 180
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=26.44 E-value=52 Score=15.88 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=10.1
Q ss_pred CceeeHHHHHHHHHH
Q psy15326 7 NGVIDIQEMTKIVQA 21 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~ 21 (78)
.|+||..++..++..
T Consensus 19 ~G~lT~~eI~~~L~~ 33 (82)
T PF03979_consen 19 KGYLTYDEINDALPE 33 (82)
T ss_dssp HSS-BHHHHHHH-S-
T ss_pred cCcCCHHHHHHHcCc
Confidence 589999999877764
No 181
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=26.26 E-value=23 Score=17.47 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=14.5
Q ss_pred HHhcCCCCCCceeHHHHHHHhc
Q psy15326 46 FAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 46 ~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
|+++-.+.+...+++||.+++.
T Consensus 11 fRRFsl~r~~~~~f~ef~~ll~ 32 (80)
T cd06403 11 FRRFSLDRNKPGKFEDFYKLLE 32 (80)
T ss_pred EEEEEeccccCcCHHHHHHHHH
Confidence 4445555556778888888765
No 182
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=26.22 E-value=74 Score=14.07 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.1
Q ss_pred HhcCCCCCCceeHHHHHHHhccCHh
Q psy15326 47 AKMDENNDGQLTQDEFLKGCLQDEE 71 (78)
Q Consensus 47 ~~~d~~~~g~i~~~ef~~~~~~~~~ 71 (78)
..+.+++.-+++.++...++.+.+.
T Consensus 22 ~dYnShNT~rL~ve~~k~lLl~L~~ 46 (48)
T PF08485_consen 22 EDYNSHNTERLDVEEMKELLLKLDY 46 (48)
T ss_pred cccCCCCccccCHHHHHHHHHhChh
Confidence 3567778888999988888876554
No 183
>PF14178 YppF: YppF-like protein
Probab=26.16 E-value=84 Score=14.63 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=12.7
Q ss_pred CceeeHHHHHHHHHHH
Q psy15326 7 NGVIDIQEMTKIVQAI 22 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~ 22 (78)
.|.|+..|++.+++.+
T Consensus 34 ~gei~i~eYR~lvreL 49 (60)
T PF14178_consen 34 QGEISINEYRNLVREL 49 (60)
T ss_pred hCcccHHHHHHHHHHH
Confidence 3788899999888863
No 184
>KOG3431|consensus
Probab=26.15 E-value=1.2e+02 Score=16.37 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=15.1
Q ss_pred CceeeHHHHHHHHHHHHHHh
Q psy15326 7 NGVIDIQEMTKIVQAIYDML 26 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~ 26 (78)
+|+|+..+|..+++++....
T Consensus 86 s~Kise~~lisiLe~is~Qt 105 (129)
T KOG3431|consen 86 SHKISEAELISILEKISAQT 105 (129)
T ss_pred cccccHHHHHHHHHHHHHhh
Confidence 57888888988888875443
No 185
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=26.15 E-value=1.2e+02 Score=17.76 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=31.1
Q ss_pred ceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 8 GVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 8 G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
|.++.+=|..+.+.++.. -++++....++++++-.+-..++-....+...+.+
T Consensus 176 GLLSRELfgkiakyVfNk------YEWpesLD~EVdRI~LEYRTKG~lG~~KeSVKRaL 228 (236)
T PF07067_consen 176 GLLSRELFGKIAKYVFNK------YEWPESLDSEVDRIYLEYRTKGELGRDKESVKRAL 228 (236)
T ss_pred hHHHHHHHHHHHHHHhcc------ccCchhhHhhhhhheeeeecccccccccHHHHHHH
Confidence 445555555554443222 23455667788999988877776555555555443
No 186
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.97 E-value=81 Score=14.41 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHH
Q psy15326 40 ERAKNIFAKMDENNDGQLTQDEFLKG 65 (78)
Q Consensus 40 ~~~~~~~~~~d~~~~g~i~~~ef~~~ 65 (78)
..+.+.+..+|...=|.-++.+|++.
T Consensus 31 ~~~~~~~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 31 QEYKKKYPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp HHHHHHHTT--TCCTTSSSHHHHHHT
T ss_pred HHHHHHCCCCCccccCCCcHHHHHHh
Confidence 33455556778888888888888865
No 187
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=25.74 E-value=76 Score=13.98 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=12.4
Q ss_pred CCceeeHHHHHHHHHH
Q psy15326 6 GNGVIDIQEMTKIVQA 21 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~ 21 (78)
..|.++..++++.+..
T Consensus 7 ~~~~itv~~~rd~lg~ 22 (50)
T PF09107_consen 7 KNGEITVAEFRDLLGL 22 (50)
T ss_dssp TTSSBEHHHHHHHHTS
T ss_pred cCCcCcHHHHHHHHCc
Confidence 3688999999887753
No 188
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=25.20 E-value=64 Score=15.63 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.0
Q ss_pred CCCCCCceeHHHHHHHhc
Q psy15326 50 DENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 50 d~~~~g~i~~~ef~~~~~ 67 (78)
-.+..|.|+.+-|.+.+.
T Consensus 12 ~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWS 29 (76)
T ss_pred EEcCCCcCcHHHHHHHHH
Confidence 457789999999999874
No 189
>KOG2871|consensus
Probab=25.19 E-value=75 Score=20.63 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=30.2
Q ss_pred ccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHH
Q psy15326 2 YDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFL 63 (78)
Q Consensus 2 ~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 63 (78)
+|+.+.|+|+-+-++.++....+.+.. .+.+.-+=+..|+.+-|-|-.++|.
T Consensus 318 ~d~~d~nfis~s~~~~vm~~~N~~vse----------~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 318 YDPEDNNFISCSGLQIVMTALNRLVSE----------PAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred cCccCCCeeecHHHHHHHHHhcccccC----------HHHHHHhcCccChhhcceEEecccc
Confidence 678888999998888887763211110 2334444445566665555555443
No 190
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=24.96 E-value=81 Score=14.08 Aligned_cols=21 Identities=14% Similarity=0.599 Sum_probs=12.6
Q ss_pred ccCCCCce-eeHHHHHHHHHHH
Q psy15326 2 YDVDGNGV-IDIQEMTKIVQAI 22 (78)
Q Consensus 2 ~D~~~~G~-i~~~e~~~~~~~~ 22 (78)
|+.|++|. +..++++..+..+
T Consensus 17 yelnrsgllvene~i~~~l~~l 38 (56)
T PF12283_consen 17 YELNRSGLLVENEEIQSQLKQL 38 (56)
T ss_pred HHhcccccccccHHHHHHHHHH
Confidence 56777775 3455666666553
No 191
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=24.82 E-value=70 Score=15.13 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=16.3
Q ss_pred ceeHHHHHHHhccCHhHHhhc
Q psy15326 56 QLTQDEFLKGCLQDEELSKML 76 (78)
Q Consensus 56 ~i~~~ef~~~~~~~~~~~~~~ 76 (78)
.|+.+.|..++.+++.+...+
T Consensus 94 ~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 94 VLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred EEeHHHHHHHHHHCcHhHHhc
Confidence 688888888888888776543
No 192
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=24.60 E-value=1.1e+02 Score=15.43 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCC-----CCCCceeHHHHHHH
Q psy15326 13 QEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDE-----NNDGQLTQDEFLKG 65 (78)
Q Consensus 13 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~ 65 (78)
+-|..+++.+.+..|.... ...+..++...+. -..|.|+.+.|.+.
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~-------~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVK-------KKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHHHHHCCT-----------HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCeeec-------HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 3455566666555665443 2233333333322 23456666666554
No 193
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=24.58 E-value=1.6e+02 Score=17.24 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHh
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAK 48 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (78)
+.+.++.+++...++.+...+|..+....-..-...+.++|..
T Consensus 13 ~~~~~d~~~~~~av~~iL~alGeD~~regL~~TP~RVak~~~e 55 (201)
T PRK12606 13 RGRRFDPPALEAAVRELLEALGEDPDREGLLDTPQRVAKAMQY 55 (201)
T ss_pred cCCccCHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHH
Confidence 4456777888888998888899877654422223334455543
No 194
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=24.51 E-value=1.4e+02 Score=16.71 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhcc
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 68 (78)
-..+.+++..++....|.+...+|++.+..
T Consensus 109 Vk~LK~iL~~~g~~C~GC~EK~dfv~ri~e 138 (154)
T PF10208_consen 109 VKQLKKILDDWGEDCKGCLEKSDFVRRIEE 138 (154)
T ss_dssp HHHHHHHHHHHTTT-SS-CSHHHHHHHCHC
T ss_pred HHHHHHHHHHcCCCCCCccchHHHHHHHHH
Confidence 445889999999999999999999998753
No 195
>KOG0506|consensus
Probab=24.21 E-value=2.4e+02 Score=19.24 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=33.5
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCC-CCCCceeHHHHHHHhcc
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDE-NNDGQLTQDEFLKGCLQ 68 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 68 (78)
++.++...|.+++++ .|...+.+--...-+.++..-+.... ...+.++.+-|.+++..
T Consensus 100 ~ekipihKFiTALks----tGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 100 SEKIPIHKFITALKS----TGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred cCcccHHHHHHHHHH----cCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 477888888888887 67654422222222222222221112 33468999999998753
No 196
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.95 E-value=68 Score=14.98 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=11.6
Q ss_pred CCCceeHHHHHHHhc
Q psy15326 53 NDGQLTQDEFLKGCL 67 (78)
Q Consensus 53 ~~g~i~~~ef~~~~~ 67 (78)
+.|.|+++.|++.++
T Consensus 36 ~~g~I~~d~~lK~vR 50 (65)
T PF09454_consen 36 QRGSIDLDTFLKQVR 50 (65)
T ss_dssp HTTSS-HHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 357899999999876
No 197
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=23.87 E-value=99 Score=14.67 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=13.8
Q ss_pred CceeeHHHHHHHHHHHHHHhC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLG 27 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~ 27 (78)
.|.++..-+..++++++...+
T Consensus 47 rgrvskavlvkmlrkly~~tk 67 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATK 67 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH-
T ss_pred cCcchHHHHHHHHHHHHHhhc
Confidence 467888888888888665444
No 198
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.82 E-value=14 Score=20.21 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=14.3
Q ss_pred CccCCCCceeeHHHHHHHHH
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQ 20 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~ 20 (78)
+.|.||+|++....|.--.+
T Consensus 94 ~qD~nGdgkldtn~fGiP~E 113 (151)
T COG4704 94 FQDENGDGKLDTNPFGIPKE 113 (151)
T ss_pred EEecCCCcccccCCCCCccC
Confidence 36889999988776654433
No 199
>PLN02223 phosphoinositide phospholipase C
Probab=23.79 E-value=2.5e+02 Score=19.23 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=35.8
Q ss_pred CCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcC----CCCCCceeHHHHHHHhccC
Q psy15326 5 DGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMD----ENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 5 ~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~ef~~~~~~~ 69 (78)
.+.|..+.+.+..++.-+.+.-|.... .....+..+..++.... ....+.++.+.|...+...
T Consensus 27 ~~~~~m~~~~l~~fl~~l~~~q~e~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 27 HGYDDDMPELLPRFIELLDTEKDEDGA--GLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcccccC--CHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 356788888888888433222332211 12223444555554432 1233679999999998763
No 200
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=23.72 E-value=29 Score=17.97 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=10.8
Q ss_pred CccCCCCceeeHHH
Q psy15326 1 MYDVDGNGVIDIQE 14 (78)
Q Consensus 1 ~~D~~~~G~i~~~e 14 (78)
++|.|++|.++...
T Consensus 60 ~hD~N~NgklD~n~ 73 (112)
T PF09912_consen 60 FHDENGNGKLDTNF 73 (112)
T ss_pred EEeCCCCCcCCcCC
Confidence 37889999888654
No 201
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=23.30 E-value=80 Score=17.00 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCC-ceeHHHHHHH
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDG-QLTQDEFLKG 65 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 65 (78)
|+-.||.+||..+++.-...+. ..........+.+.++.+.+.....+ .++..|..++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~--~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVR--FRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEE--ECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 4567999999988876211111 11111222345566666666665554 4888877665
No 202
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=23.05 E-value=72 Score=15.72 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=13.5
Q ss_pred cCCCCCCceeHHHHHHHh
Q psy15326 49 MDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 49 ~d~~~~g~i~~~ef~~~~ 66 (78)
+..-..+.||++||..+=
T Consensus 28 C~FVAPmSIS~eeY~~LH 45 (81)
T PF10891_consen 28 CYFVAPMSISFEEYIRLH 45 (81)
T ss_pred cceecccEeeHHHHHHHH
Confidence 344557899999998874
No 203
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=23.00 E-value=99 Score=20.71 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=22.7
Q ss_pred CceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCC
Q psy15326 7 NGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDEN 52 (78)
Q Consensus 7 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 52 (78)
+|.||..++. -.+..++|..++ ...+.++|...+.+
T Consensus 383 DGTITkSD~~---Ghv~~miGkdwt-------h~gVAkLYtdI~rN 418 (580)
T COG5083 383 DGTITKSDAL---GHVKQMIGKDWT-------HNGVAKLYTDIDRN 418 (580)
T ss_pred CCcEEehhhH---HHHHHHhccchh-------hcchhhhhhhhccC
Confidence 6899999876 222334675544 34467777777655
No 204
>KOG4286|consensus
Probab=22.72 E-value=93 Score=22.27 Aligned_cols=41 Identities=15% Similarity=0.339 Sum_probs=25.4
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDEN 52 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 52 (78)
+||..++|.|..-+|+..+-.+.+.. ..+....+|+..-..
T Consensus 478 vyD~~R~g~irvls~ki~~i~lck~~-----------leek~~ylF~~vA~~ 518 (966)
T KOG4286|consen 478 VYDTGRTGRIRVLSFKIGIISLCKAH-----------LEDKYRYLFKQVASS 518 (966)
T ss_pred hcccCCCcceEEeeehhhHHHHhcch-----------hHHHHHHHHHHHcCc
Confidence 58888888888877776665543221 144455777665433
No 205
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=1.3e+02 Score=17.15 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=18.5
Q ss_pred ccCCCC------ceeeHHHHHHHHHHHHHHh
Q psy15326 2 YDVDGN------GVIDIQEMTKIVQAIYDML 26 (78)
Q Consensus 2 ~D~~~~------G~i~~~e~~~~~~~~~~~~ 26 (78)
||.+|. |+++.++|..+++-+.+..
T Consensus 122 fdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 122 FDKTGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred EcCCCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 566653 7899999999998765443
No 206
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=21.69 E-value=1.3e+02 Score=15.10 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=29.7
Q ss_pred ceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHh
Q psy15326 8 GVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGC 66 (78)
Q Consensus 8 G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 66 (78)
-.|++.+|+..+..+ .+... ..+...+=...|..+++.||.=||--..
T Consensus 21 ~IVPW~~F~~~L~~~---h~~~~--------~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKV---HPISS--------GLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHH---S--SS--------HHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHh---cCCCc--------hHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 468999999998874 22221 1222333346788999999987775443
No 207
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=21.59 E-value=81 Score=13.59 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=6.9
Q ss_pred ceeeHHHHHHH
Q psy15326 8 GVIDIQEMTKI 18 (78)
Q Consensus 8 G~i~~~e~~~~ 18 (78)
|.||.+|+..+
T Consensus 30 ~~IT~eey~eI 40 (45)
T TIGR01669 30 KLITREQYKVI 40 (45)
T ss_pred CccCHHHHHHH
Confidence 56676666554
No 208
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=21.34 E-value=22 Score=22.33 Aligned_cols=28 Identities=7% Similarity=0.002 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHhccC
Q psy15326 42 AKNIFAKMDENNDGQLTQDEFLKGCLQD 69 (78)
Q Consensus 42 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 69 (78)
+...+...|..+=|.|++|+|+-++.++
T Consensus 91 I~~~ip~~~f~GLaVIDwE~WRP~w~rN 118 (337)
T PF01630_consen 91 INEYIPDPDFSGLAVIDWEEWRPLWRRN 118 (337)
T ss_dssp HHHHS--TT--SEEEEE--SS-SSGGG-
T ss_pred HHHhCCCCCCCcceEEeccccccchhhc
Confidence 5555556677788899999999988753
No 209
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=20.94 E-value=2.9e+02 Score=19.06 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=21.5
Q ss_pred CccCCCCceeeHHHHHHHHHHHHHHhCC
Q psy15326 1 MYDVDGNGVIDIQEMTKIVQAIYDMLGA 28 (78)
Q Consensus 1 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~ 28 (78)
++|.++++..+|+++..-++.+++.+..
T Consensus 486 vld~dR~~~~~W~~l~~~l~~~~~~i~~ 513 (585)
T PF09960_consen 486 VLDEDRNAGKGWEELYKSLDKFMSWIKE 513 (585)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4788878889999988888777665543
No 210
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=20.84 E-value=1.1e+02 Score=15.95 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=19.0
Q ss_pred cCCCCCCceeHHHHHHHhccCHhHHhh
Q psy15326 49 MDENNDGQLTQDEFLKGCLQDEELSKM 75 (78)
Q Consensus 49 ~d~~~~g~i~~~ef~~~~~~~~~~~~~ 75 (78)
++++...-++.++|.++.... ++++.
T Consensus 57 F~~~s~~dv~l~Df~~fF~p~-G~ld~ 82 (125)
T PF06744_consen 57 FDPDSSRDVSLADFARFFGPG-GVLDQ 82 (125)
T ss_pred CCCCCcccCCHHHHHHHhcCC-CcHHH
Confidence 366677789999999988765 55543
No 211
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=20.71 E-value=1.2e+02 Score=14.66 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHHHHhc-cCHhHHh
Q psy15326 39 EERAKNIFAKMDENNDGQLTQDEFLKGCL-QDEELSK 74 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~-~~~~~~~ 74 (78)
++.+..++.... ..|...+..|++.+. ..|.+..
T Consensus 45 ~~kar~Lld~l~--~kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 45 QEKMRKLFSFVR--SWGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HHHHHHHHHHHH--ccCHHHHHHHHHHHHHhChHHHh
Confidence 344555555543 357778888999887 5555543
No 212
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=20.70 E-value=83 Score=17.03 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=13.4
Q ss_pred CCCceeHHHHHHHhccCH
Q psy15326 53 NDGQLTQDEFLKGCLQDE 70 (78)
Q Consensus 53 ~~g~i~~~ef~~~~~~~~ 70 (78)
.+|.|+..||++.+-.-+
T Consensus 41 rng~IsVreFVr~La~S~ 58 (131)
T PF00427_consen 41 RNGQISVREFVRALAKSE 58 (131)
T ss_dssp HTTSS-HHHHHHHHHTSH
T ss_pred HcCCCcHHHHHHHHHcCH
Confidence 379999999999986443
No 213
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=20.30 E-value=1.2e+02 Score=14.47 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCceeeHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHhcCCCCCCceeHHHHHHHhc
Q psy15326 6 GNGVIDIQEMTKIVQAIYDMLGACSSNRPADSAEERAKNIFAKMDENNDGQLTQDEFLKGCL 67 (78)
Q Consensus 6 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 67 (78)
++|....-+...+..++.+.. ......+.......+..+...+...+...|+.++...++.
T Consensus 6 rdG~~e~F~~~KI~~~i~~a~-~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~ 66 (90)
T PF03477_consen 6 RDGRVEPFDREKIVRAIEKAC-EASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVE 66 (90)
T ss_dssp SSSSEEES-HHHHHHHHHTTC-TTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHH
T ss_pred CCCcEeeecHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHH
Confidence 456544444444444443222 1112233445667778888777665556899998887763
No 214
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=20.26 E-value=1.3e+02 Score=14.65 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCCCC
Q psy15326 39 EERAKNIFAKMDENN 53 (78)
Q Consensus 39 ~~~~~~~~~~~d~~~ 53 (78)
+..++.+++..+.++
T Consensus 24 d~kvk~mlklieedg 38 (74)
T PF07765_consen 24 DEKVKAMLKLIEEDG 38 (74)
T ss_pred HHHHHHHHHHhccCc
Confidence 444666777776554
No 215
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=20.25 E-value=1.2e+02 Score=14.15 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=12.7
Q ss_pred CCCCCceeHHHHHHHh
Q psy15326 51 ENNDGQLTQDEFLKGC 66 (78)
Q Consensus 51 ~~~~g~i~~~ef~~~~ 66 (78)
.|.||++|--.|.++.
T Consensus 5 TN~dGrLSTT~~iQff 20 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFF 20 (60)
T ss_pred cCCCCcEehHHHHHHH
Confidence 3568999998888875
Done!