Query psy15327
Match_columns 127
No_of_seqs 128 out of 2059
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 18:08:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 99.9 6.8E-23 1.5E-27 127.9 12.0 123 1-124 65-187 (193)
2 KOG0034|consensus 99.8 1.6E-18 3.4E-23 108.3 10.2 117 1-122 67-185 (187)
3 COG5126 FRQ1 Ca2+-binding prot 99.8 1.9E-18 4.2E-23 104.8 9.6 100 2-114 58-158 (160)
4 KOG0027|consensus 99.7 7.7E-17 1.7E-21 98.6 10.2 99 2-112 46-149 (151)
5 KOG0027|consensus 99.7 1.9E-16 4.1E-21 96.9 9.7 104 2-112 10-113 (151)
6 PTZ00183 centrin; Provisional 99.7 5.3E-16 1.1E-20 95.2 11.6 99 2-111 19-117 (158)
7 COG5126 FRQ1 Ca2+-binding prot 99.7 6.8E-16 1.5E-20 93.8 11.6 112 2-125 22-139 (160)
8 PTZ00183 centrin; Provisional 99.7 5.6E-15 1.2E-19 90.6 12.0 102 2-115 55-157 (158)
9 PTZ00184 calmodulin; Provision 99.7 4.2E-15 9.2E-20 90.2 11.3 100 2-112 13-112 (149)
10 KOG0037|consensus 99.7 3.3E-15 7.1E-20 93.8 10.8 107 2-126 96-202 (221)
11 PTZ00184 calmodulin; Provision 99.6 8.9E-15 1.9E-19 88.8 11.6 98 2-111 49-147 (149)
12 KOG0038|consensus 99.6 1.6E-14 3.5E-19 85.5 8.9 116 1-123 72-188 (189)
13 KOG0028|consensus 99.6 3.6E-14 7.8E-19 85.1 10.4 99 3-112 36-134 (172)
14 KOG0028|consensus 99.5 1.2E-13 2.7E-18 82.8 9.8 99 3-113 72-171 (172)
15 PLN02964 phosphatidylserine de 99.5 2.7E-13 5.8E-18 98.2 9.9 96 2-113 145-244 (644)
16 KOG0036|consensus 99.5 8.5E-13 1.8E-17 89.8 9.3 97 2-115 53-149 (463)
17 PF13499 EF-hand_7: EF-hand do 99.5 3.5E-13 7.5E-18 71.3 6.0 61 2-62 2-66 (66)
18 PF13499 EF-hand_7: EF-hand do 99.4 3.1E-13 6.7E-18 71.5 5.5 66 37-110 1-66 (66)
19 KOG0037|consensus 99.4 4.3E-12 9.3E-17 79.9 10.5 100 2-119 59-164 (221)
20 KOG0044|consensus 99.4 5.1E-12 1.1E-16 79.4 9.8 99 2-112 28-128 (193)
21 cd05022 S-100A13 S-100A13: S-1 99.3 1E-11 2.2E-16 69.2 6.7 65 36-112 8-75 (89)
22 KOG0031|consensus 99.3 1.1E-10 2.4E-15 69.9 10.8 97 3-111 35-164 (171)
23 KOG0030|consensus 99.3 4E-11 8.8E-16 70.6 8.7 102 2-112 13-116 (152)
24 cd05022 S-100A13 S-100A13: S-1 99.3 2.4E-11 5.2E-16 67.7 6.5 65 2-66 10-77 (89)
25 KOG0036|consensus 99.2 1.4E-10 3.1E-15 79.2 10.2 94 2-112 16-110 (463)
26 cd05027 S-100B S-100B: S-100B 99.2 9.4E-11 2E-15 65.3 7.4 70 36-112 8-79 (88)
27 cd05027 S-100B S-100B: S-100B 99.2 1.4E-10 3.1E-15 64.6 7.1 64 2-65 10-80 (88)
28 KOG0377|consensus 99.2 4.4E-10 9.6E-15 77.6 10.2 103 2-112 466-615 (631)
29 cd00051 EFh EF-hand, calcium b 99.2 1.5E-10 3.2E-15 59.7 6.1 61 2-62 2-62 (63)
30 KOG0034|consensus 99.1 1.1E-09 2.3E-14 68.8 9.8 96 2-112 35-132 (187)
31 cd00052 EH Eps15 homology doma 99.1 3.7E-10 7.9E-15 59.6 6.5 60 39-112 2-61 (67)
32 cd05031 S-100A10_like S-100A10 99.1 4.3E-10 9.3E-15 63.5 7.1 70 36-112 8-79 (94)
33 smart00027 EH Eps15 homology d 99.1 5.2E-10 1.1E-14 63.4 7.3 64 35-112 9-72 (96)
34 cd00052 EH Eps15 homology doma 99.1 4.2E-10 9.2E-15 59.4 6.6 61 3-65 2-62 (67)
35 cd05031 S-100A10_like S-100A10 99.1 5.9E-10 1.3E-14 62.9 7.1 64 2-65 10-80 (94)
36 cd05026 S-100Z S-100Z: S-100Z 99.1 6.3E-10 1.4E-14 62.7 7.2 64 2-65 12-82 (93)
37 cd00051 EFh EF-hand, calcium b 99.1 7.4E-10 1.6E-14 57.0 7.0 61 38-110 2-62 (63)
38 KOG2562|consensus 99.1 5.6E-10 1.2E-14 77.3 8.1 114 1-118 312-429 (493)
39 PF13833 EF-hand_8: EF-hand do 99.1 3.9E-10 8.5E-15 57.1 5.7 52 13-64 1-53 (54)
40 cd05025 S-100A1 S-100A1: S-100 99.1 7.2E-10 1.6E-14 62.3 7.2 73 35-115 8-83 (92)
41 cd05026 S-100Z S-100Z: S-100Z 99.1 7.7E-10 1.7E-14 62.3 7.2 70 36-112 10-81 (93)
42 cd05025 S-100A1 S-100A1: S-100 99.1 7.1E-10 1.5E-14 62.3 7.0 64 2-65 11-81 (92)
43 smart00027 EH Eps15 homology d 99.1 9.1E-10 2E-14 62.4 7.2 65 2-68 12-76 (96)
44 cd00252 SPARC_EC SPARC_EC; ext 99.1 8.8E-10 1.9E-14 64.3 7.1 63 34-112 46-108 (116)
45 cd00213 S-100 S-100: S-100 dom 99.1 1.1E-09 2.4E-14 61.0 7.1 70 36-112 8-79 (88)
46 PF13833 EF-hand_8: EF-hand do 99.1 6.8E-10 1.5E-14 56.3 5.4 52 49-112 1-53 (54)
47 cd05029 S-100A6 S-100A6: S-100 99.1 1.2E-09 2.7E-14 60.8 6.8 67 37-112 11-79 (88)
48 cd05029 S-100A6 S-100A6: S-100 99.0 1.6E-09 3.4E-14 60.4 6.8 64 2-65 12-80 (88)
49 PLN02964 phosphatidylserine de 99.0 1.5E-09 3.1E-14 79.2 6.6 64 1-64 180-243 (644)
50 cd00213 S-100 S-100: S-100 dom 99.0 3.2E-09 7E-14 59.1 6.6 64 2-65 10-80 (88)
51 cd05023 S-100A11 S-100A11: S-1 99.0 8E-09 1.7E-13 57.6 7.8 70 36-112 9-80 (89)
52 cd05023 S-100A11 S-100A11: S-1 99.0 6.9E-09 1.5E-13 57.9 7.2 64 2-65 11-81 (89)
53 KOG0030|consensus 98.9 1.2E-08 2.6E-13 60.3 8.2 85 14-111 63-150 (152)
54 PF14658 EF-hand_9: EF-hand do 98.9 4.7E-09 1E-13 54.6 5.7 61 4-64 2-64 (66)
55 cd00252 SPARC_EC SPARC_EC; ext 98.9 5.8E-09 1.3E-13 60.9 6.5 57 2-62 50-106 (116)
56 KOG4223|consensus 98.9 8.7E-09 1.9E-13 68.7 7.6 95 2-108 202-301 (325)
57 KOG4666|consensus 98.9 6.3E-09 1.4E-13 69.5 6.0 105 2-119 261-366 (412)
58 KOG4223|consensus 98.8 2E-08 4.2E-13 67.0 7.4 104 2-112 165-269 (325)
59 PF14658 EF-hand_9: EF-hand do 98.8 2.9E-08 6.2E-13 51.7 5.8 61 40-112 2-64 (66)
60 PF00036 EF-hand_1: EF hand; 98.8 1.5E-08 3.3E-13 44.6 3.7 27 2-28 2-28 (29)
61 KOG2643|consensus 98.7 4.5E-08 9.8E-13 67.7 7.1 102 10-114 209-316 (489)
62 cd05030 calgranulins Calgranul 98.7 6.6E-08 1.4E-12 53.9 6.4 70 36-112 8-79 (88)
63 PF00036 EF-hand_1: EF hand; 98.7 1.3E-08 2.9E-13 44.7 2.8 28 37-64 1-28 (29)
64 cd05030 calgranulins Calgranul 98.7 7E-08 1.5E-12 53.8 6.2 63 3-65 11-80 (88)
65 PF14788 EF-hand_10: EF hand; 98.6 2E-07 4.3E-12 45.9 5.6 50 16-65 1-50 (51)
66 KOG0031|consensus 98.6 6.5E-07 1.4E-11 54.0 8.2 92 34-125 30-148 (171)
67 KOG0040|consensus 98.6 3.4E-07 7.5E-12 71.4 7.8 96 4-110 2257-2359(2399)
68 cd05024 S-100A10 S-100A10: A s 98.5 1.7E-06 3.7E-11 48.1 7.0 62 3-65 11-77 (91)
69 PRK12309 transaldolase/EF-hand 98.4 6.6E-07 1.4E-11 62.4 5.9 53 2-67 336-388 (391)
70 KOG0041|consensus 98.4 4.7E-06 1E-10 52.5 9.0 97 2-108 101-199 (244)
71 KOG0041|consensus 98.4 1.9E-06 4.1E-11 54.2 6.5 65 36-112 99-163 (244)
72 cd05024 S-100A10 S-100A10: A s 98.4 6.8E-06 1.5E-10 45.7 7.9 68 37-112 9-76 (91)
73 KOG2643|consensus 98.4 2.1E-06 4.6E-11 59.7 7.1 92 5-112 238-346 (489)
74 KOG0377|consensus 98.4 1.8E-06 3.8E-11 60.3 6.4 65 2-66 549-617 (631)
75 PF14788 EF-hand_10: EF hand; 98.3 2.4E-06 5.3E-11 42.1 5.0 48 52-111 1-48 (51)
76 PF13405 EF-hand_6: EF-hand do 98.3 1.3E-06 2.9E-11 38.9 3.6 26 2-27 2-27 (31)
77 PF13202 EF-hand_5: EF hand; P 98.3 1.3E-06 2.9E-11 37.0 3.4 22 3-24 2-23 (25)
78 PF13405 EF-hand_6: EF-hand do 98.3 7.9E-07 1.7E-11 39.6 2.7 27 37-63 1-27 (31)
79 PRK12309 transaldolase/EF-hand 98.3 4.8E-06 1E-10 58.1 7.6 57 31-112 329-385 (391)
80 PF13202 EF-hand_5: EF hand; P 98.3 1.2E-06 2.5E-11 37.1 2.6 25 38-62 1-25 (25)
81 PF12763 EF-hand_4: Cytoskelet 98.2 6.9E-06 1.5E-10 47.1 6.2 62 3-67 13-74 (104)
82 PF12763 EF-hand_4: Cytoskelet 98.2 1E-05 2.3E-10 46.3 6.8 65 33-112 7-71 (104)
83 PF10591 SPARC_Ca_bdg: Secrete 98.0 1.7E-06 3.6E-11 50.4 1.1 63 32-108 50-112 (113)
84 KOG4065|consensus 98.0 5.5E-05 1.2E-09 43.6 6.3 77 34-110 65-143 (144)
85 KOG0169|consensus 98.0 6.2E-05 1.3E-09 55.8 8.0 96 1-112 137-232 (746)
86 KOG4251|consensus 97.9 3E-05 6.5E-10 50.5 5.2 63 2-64 103-168 (362)
87 KOG0751|consensus 97.9 9.7E-05 2.1E-09 52.6 7.9 99 7-111 81-206 (694)
88 KOG0751|consensus 97.9 0.00012 2.5E-09 52.2 8.1 91 8-112 44-136 (694)
89 KOG2562|consensus 97.8 8.7E-05 1.9E-09 52.2 6.6 91 6-111 284-378 (493)
90 KOG0040|consensus 97.7 6E-05 1.3E-09 59.7 5.1 71 37-112 2254-2324(2399)
91 PF05042 Caleosin: Caleosin re 97.7 0.0011 2.5E-08 41.1 8.9 103 2-110 9-164 (174)
92 smart00054 EFh EF-hand, calciu 97.6 0.00013 2.9E-09 30.8 3.4 26 2-27 2-27 (29)
93 PF10591 SPARC_Ca_bdg: Secrete 97.6 2.5E-05 5.3E-10 45.5 0.9 56 3-60 57-112 (113)
94 PF09069 EF-hand_3: EF-hand; 97.5 0.0012 2.5E-08 36.8 6.6 81 35-120 2-83 (90)
95 KOG4251|consensus 97.5 0.00037 8E-09 45.6 5.1 95 2-108 238-341 (362)
96 PF09279 EF-hand_like: Phospho 97.4 0.00026 5.6E-09 38.8 3.5 65 37-112 1-69 (83)
97 smart00054 EFh EF-hand, calciu 97.4 0.0002 4.3E-09 30.2 2.2 27 38-64 2-28 (29)
98 KOG1029|consensus 97.3 0.0013 2.7E-08 49.5 7.2 60 37-110 196-255 (1118)
99 KOG4347|consensus 97.3 0.00033 7.1E-09 51.3 3.6 57 1-58 556-612 (671)
100 KOG0038|consensus 97.2 0.0011 2.3E-08 40.1 4.3 64 38-112 73-136 (189)
101 PF09279 EF-hand_like: Phospho 97.0 0.0021 4.6E-08 35.2 4.7 62 2-64 2-69 (83)
102 KOG0046|consensus 97.0 0.0042 9.1E-08 44.8 7.0 66 37-112 20-85 (627)
103 KOG0046|consensus 96.9 0.0068 1.5E-07 43.8 6.9 64 2-66 21-87 (627)
104 PLN02952 phosphoinositide phos 96.7 0.02 4.3E-07 42.6 8.4 89 13-112 13-110 (599)
105 KOG4578|consensus 96.6 0.0018 3.9E-08 44.1 2.4 70 35-115 332-401 (421)
106 KOG3555|consensus 96.5 0.0055 1.2E-07 42.1 4.4 64 33-112 247-310 (434)
107 KOG4666|consensus 96.5 0.0023 5.1E-08 43.5 2.5 66 36-112 259-324 (412)
108 KOG1955|consensus 96.0 0.023 4.9E-07 41.1 5.4 62 36-111 231-292 (737)
109 KOG4065|consensus 95.8 0.036 7.7E-07 32.3 4.6 57 5-61 72-142 (144)
110 KOG0169|consensus 95.8 0.11 2.4E-06 39.4 8.2 97 2-112 174-274 (746)
111 KOG4347|consensus 95.7 0.028 6E-07 41.7 5.0 77 17-106 535-612 (671)
112 KOG3866|consensus 95.2 0.054 1.2E-06 37.0 4.7 72 39-110 247-322 (442)
113 KOG4578|consensus 95.1 0.025 5.4E-07 38.8 2.9 60 5-64 338-398 (421)
114 KOG1029|consensus 95.1 0.052 1.1E-06 41.4 4.7 61 3-65 198-258 (1118)
115 KOG1707|consensus 95.1 0.34 7.4E-06 36.0 8.6 113 2-115 197-346 (625)
116 KOG1955|consensus 94.9 0.092 2E-06 38.1 5.5 59 5-65 236-294 (737)
117 KOG4301|consensus 94.8 0.087 1.9E-06 36.4 4.8 103 5-115 115-218 (434)
118 KOG0035|consensus 94.6 0.37 8E-06 37.6 8.2 95 2-108 749-848 (890)
119 PF05517 p25-alpha: p25-alpha 94.1 0.79 1.7E-05 28.2 9.5 68 2-69 1-74 (154)
120 KOG0039|consensus 94.0 0.28 6.1E-06 37.1 6.6 91 14-115 2-92 (646)
121 PF05517 p25-alpha: p25-alpha 94.0 0.39 8.4E-06 29.6 6.1 60 44-112 10-69 (154)
122 PF05042 Caleosin: Caleosin re 93.9 0.29 6.3E-06 30.7 5.5 78 36-113 7-125 (174)
123 KOG4286|consensus 93.7 0.55 1.2E-05 36.0 7.4 111 5-120 475-588 (966)
124 KOG3555|consensus 92.7 0.14 3.1E-06 35.5 3.0 57 4-64 254-310 (434)
125 PF08414 NADPH_Ox: Respiratory 92.5 0.99 2.1E-05 25.6 5.7 58 3-65 33-93 (100)
126 KOG2243|consensus 92.4 0.37 8.1E-06 39.7 5.2 59 41-112 4062-4120(5019)
127 KOG0042|consensus 92.1 0.35 7.6E-06 35.9 4.5 63 37-111 594-656 (680)
128 KOG1265|consensus 91.2 1.5 3.2E-05 34.5 7.1 91 17-112 205-299 (1189)
129 PF09068 EF-hand_2: EF hand; 90.6 2.4 5.2E-05 25.3 8.3 107 3-111 3-124 (127)
130 PF12174 RST: RCD1-SRO-TAF4 (R 90.4 0.88 1.9E-05 24.1 4.0 47 16-65 8-54 (70)
131 KOG2557|consensus 89.6 1.8 4E-05 30.5 5.9 103 16-119 74-182 (427)
132 PLN02228 Phosphoinositide phos 89.6 1.6 3.5E-05 32.7 6.0 68 33-112 21-92 (567)
133 PF14513 DAG_kinase_N: Diacylg 89.5 0.92 2E-05 27.5 4.0 69 15-96 6-81 (138)
134 PLN02952 phosphoinositide phos 89.5 1.5 3.2E-05 33.1 5.8 53 49-112 13-65 (599)
135 PF08726 EFhand_Ca_insen: Ca2+ 89.3 1 2.2E-05 23.8 3.6 33 82-115 4-36 (69)
136 PLN02222 phosphoinositide phos 88.7 1.9 4.2E-05 32.4 5.9 67 34-112 23-90 (581)
137 PF08414 NADPH_Ox: Respiratory 88.6 2.4 5.1E-05 24.1 4.9 60 36-112 30-92 (100)
138 KOG0035|consensus 88.6 1.5 3.3E-05 34.4 5.4 72 35-114 746-818 (890)
139 PF11116 DUF2624: Protein of u 87.9 3.1 6.8E-05 23.0 6.9 69 16-93 14-82 (85)
140 KOG2243|consensus 86.4 1.8 4E-05 36.1 4.9 58 4-62 4061-4118(5019)
141 PF09068 EF-hand_2: EF hand; 85.9 4.4 9.5E-05 24.2 5.4 62 3-64 44-125 (127)
142 PRK13654 magnesium-protoporphy 85.2 2.7 5.9E-05 29.3 4.7 83 28-122 37-122 (355)
143 KOG0042|consensus 84.9 1.8 3.8E-05 32.4 3.9 63 3-65 596-658 (680)
144 PLN02230 phosphoinositide phos 83.3 5.4 0.00012 30.2 5.9 70 33-112 26-102 (598)
145 KOG3866|consensus 82.8 1.8 3.9E-05 29.9 3.1 61 4-64 248-324 (442)
146 PF02761 Cbl_N2: CBL proto-onc 82.3 6.5 0.00014 21.7 5.3 52 14-65 20-71 (85)
147 PF00404 Dockerin_1: Dockerin 81.7 2.6 5.6E-05 16.7 2.2 15 10-24 1-15 (21)
148 PF04876 Tenui_NCP: Tenuivirus 80.6 11 0.00023 23.2 6.8 14 103-116 151-164 (175)
149 KOG0998|consensus 79.6 0.51 1.1E-05 36.9 -0.3 62 4-67 287-348 (847)
150 CHL00185 ycf59 magnesium-proto 79.6 6.3 0.00014 27.5 4.8 83 28-122 33-118 (351)
151 KOG0506|consensus 77.5 7.9 0.00017 28.6 5.0 98 4-101 90-198 (622)
152 KOG1707|consensus 77.0 2.5 5.4E-05 31.7 2.5 62 1-65 316-378 (625)
153 PF02761 Cbl_N2: CBL proto-onc 76.9 10 0.00022 20.9 6.1 62 37-111 8-69 (85)
154 cd01047 ACSF Aerobic Cyclase S 76.9 9.8 0.00021 26.3 5.1 83 28-122 17-102 (323)
155 PLN02228 Phosphoinositide phos 75.8 14 0.00031 27.9 6.1 61 2-64 26-92 (567)
156 PF14513 DAG_kinase_N: Diacylg 74.6 5.8 0.00013 24.1 3.3 48 51-112 6-60 (138)
157 KOG1954|consensus 74.1 7 0.00015 28.1 4.0 54 4-60 448-501 (532)
158 PLN02223 phosphoinositide phos 73.2 14 0.00031 27.7 5.5 71 34-112 14-92 (537)
159 KOG4286|consensus 72.3 25 0.00055 27.6 6.6 95 3-110 423-531 (966)
160 cd02977 ArsC_family Arsenate R 71.8 14 0.00031 20.8 4.4 54 51-117 34-90 (105)
161 KOG2419|consensus 71.2 4 8.7E-05 31.2 2.4 63 2-64 439-533 (975)
162 TIGR02029 AcsF magnesium-proto 71.2 12 0.00026 26.0 4.5 83 28-122 27-112 (337)
163 KOG0998|consensus 70.8 3.3 7.2E-05 32.7 2.0 63 3-67 14-76 (847)
164 PF09373 PMBR: Pseudomurein-bi 70.0 8.7 0.00019 17.0 3.2 19 50-68 2-20 (33)
165 KOG1264|consensus 70.0 12 0.00025 29.8 4.6 103 1-112 145-249 (1267)
166 KOG1785|consensus 69.4 41 0.00088 24.5 7.7 86 12-112 186-274 (563)
167 PLN02508 magnesium-protoporphy 69.3 20 0.00043 25.2 5.2 81 31-123 36-119 (357)
168 PLN02222 phosphoinositide phos 68.7 21 0.00046 27.1 5.7 61 2-64 27-90 (581)
169 PF11363 DUF3164: Protein of u 68.1 26 0.00056 22.7 5.3 39 26-64 109-147 (195)
170 PF01023 S_100: S-100/ICaBP ty 67.2 11 0.00024 17.9 2.8 33 85-117 7-42 (44)
171 PF08976 DUF1880: Domain of un 66.8 8.5 0.00018 22.6 2.7 32 81-112 4-35 (118)
172 cd03035 ArsC_Yffb Arsenate Red 66.2 5.9 0.00013 22.7 2.0 51 52-117 35-88 (105)
173 KOG1265|consensus 63.4 81 0.0018 25.7 8.3 84 11-112 159-249 (1189)
174 PLN02230 phosphoinositide phos 61.9 43 0.00093 25.7 6.1 62 2-64 31-102 (598)
175 PF08976 DUF1880: Domain of un 61.1 12 0.00027 21.9 2.7 31 33-63 4-34 (118)
176 PF03556 Cullin_binding: Culli 57.9 36 0.00079 19.9 4.5 11 100-110 106-116 (117)
177 KOG2871|consensus 56.7 12 0.00026 26.7 2.4 58 2-59 311-369 (449)
178 TIGR01848 PHA_reg_PhaR polyhyd 56.3 38 0.00082 19.6 5.2 18 45-62 12-29 (107)
179 KOG4403|consensus 55.0 36 0.00078 25.0 4.6 56 12-67 40-99 (575)
180 cd07313 terB_like_2 tellurium 54.7 36 0.00079 18.9 4.5 53 50-112 13-65 (104)
181 PF07879 PHB_acc_N: PHB/PHA ac 54.1 13 0.00029 19.3 1.8 22 43-64 10-31 (64)
182 smart00549 TAFH TAF homology. 52.8 41 0.00088 18.9 5.8 37 82-121 24-66 (92)
183 PF03960 ArsC: ArsC family; I 52.5 11 0.00023 21.6 1.5 56 52-117 32-87 (110)
184 PF11116 DUF2624: Protein of u 51.5 41 0.00089 18.6 6.7 49 52-112 14-62 (85)
185 PF08557 Lipid_DES: Sphingolip 51.2 18 0.00039 16.8 1.8 18 108-125 21-38 (39)
186 PF09336 Vps4_C: Vps4 C termin 50.7 28 0.0006 17.9 2.7 24 16-39 29-52 (62)
187 TIGR00014 arsC arsenate reduct 50.5 32 0.0007 19.9 3.3 53 52-117 35-90 (114)
188 KOG4004|consensus 49.3 18 0.00039 23.5 2.2 30 82-111 220-249 (259)
189 PRK13344 spxA transcriptional 49.1 20 0.00043 21.5 2.3 52 52-117 36-90 (132)
190 TIGR03573 WbuX N-acetyl sugar 49.0 69 0.0015 22.6 5.3 15 80-94 302-316 (343)
191 PF12631 GTPase_Cys_C: Catalyt 48.9 40 0.00087 17.7 3.7 49 37-93 24-72 (73)
192 KOG4070|consensus 47.5 22 0.00047 22.0 2.3 68 37-112 13-85 (180)
193 KOG3741|consensus 46.6 31 0.00067 26.2 3.3 58 4-66 590-649 (655)
194 PF08006 DUF1700: Protein of u 46.6 70 0.0015 20.1 4.7 27 17-43 1-27 (181)
195 PF09824 ArsR: ArsR transcript 46.2 50 0.0011 20.6 3.7 75 36-125 72-146 (160)
196 PF09107 SelB-wing_3: Elongati 45.2 39 0.00085 16.5 3.1 30 50-96 8-37 (50)
197 cd00171 Sec7 Sec7 domain; Doma 44.9 38 0.00082 21.5 3.3 37 9-45 142-180 (185)
198 PF08349 DUF1722: Protein of u 44.0 65 0.0014 18.7 5.9 31 81-111 66-96 (117)
199 PF08100 Dimerisation: Dimeris 43.0 21 0.00045 17.6 1.5 38 5-43 11-48 (51)
200 cd03033 ArsC_15kD Arsenate Red 42.9 32 0.0007 19.9 2.5 52 53-117 37-88 (113)
201 PF08671 SinI: Anti-repressor 42.0 15 0.00033 16.0 0.8 13 100-112 16-28 (30)
202 PF03979 Sigma70_r1_1: Sigma-7 41.4 43 0.00093 18.1 2.7 41 3-47 10-50 (82)
203 PF11422 IBP39: Initiator bind 41.0 95 0.0021 19.8 6.6 65 37-112 20-87 (181)
204 KOG2419|consensus 40.7 48 0.001 25.8 3.6 77 33-112 434-533 (975)
205 PF05952 ComX: Bacillus compet 40.1 38 0.00083 17.2 2.2 20 103-122 2-21 (57)
206 PRK12559 transcriptional regul 39.8 23 0.0005 21.2 1.6 52 52-117 36-90 (131)
207 TIGR01616 nitro_assoc nitrogen 39.5 34 0.00074 20.3 2.3 49 53-117 38-89 (126)
208 cd02518 GT2_SpsF SpsF is a gly 38.4 85 0.0018 20.3 4.3 35 84-119 196-230 (233)
209 KOG1954|consensus 37.4 58 0.0012 23.8 3.4 55 39-108 447-501 (532)
210 KOG4629|consensus 37.1 85 0.0019 24.7 4.5 56 37-111 405-460 (714)
211 cd03032 ArsC_Spx Arsenate Redu 36.1 83 0.0018 18.1 3.6 52 52-117 36-90 (115)
212 smart00222 Sec7 Sec7 domain. D 36.0 63 0.0014 20.5 3.3 37 9-45 144-182 (187)
213 PRK01655 spxA transcriptional 35.9 53 0.0012 19.5 2.8 52 52-117 36-90 (131)
214 KOG2871|consensus 35.7 35 0.00075 24.6 2.1 32 34-65 307-338 (449)
215 cd03036 ArsC_like Arsenate Red 35.5 55 0.0012 18.7 2.7 53 52-117 35-91 (111)
216 TIGR02675 tape_meas_nterm tape 35.5 56 0.0012 17.4 2.6 24 97-120 27-50 (75)
217 PLN02223 phosphoinositide phos 35.4 1.7E+02 0.0036 22.4 5.6 62 2-64 18-92 (537)
218 COG0292 RplT Ribosomal protein 35.1 73 0.0016 18.7 3.0 20 17-36 74-93 (118)
219 PF07492 Trehalase_Ca-bi: Neut 34.4 9.2 0.0002 16.6 -0.5 18 88-105 3-20 (30)
220 KOG4629|consensus 34.4 1E+02 0.0023 24.3 4.6 58 3-67 407-464 (714)
221 COG1017 Hmp Hemoglobin-like fl 33.6 36 0.00078 20.9 1.7 26 100-125 23-48 (150)
222 PF11829 DUF3349: Protein of u 32.6 1E+02 0.0022 17.6 4.6 49 17-65 20-68 (96)
223 COG3877 Uncharacterized protei 32.4 1.1E+02 0.0023 17.8 5.6 53 53-111 69-121 (122)
224 PRK10026 arsenate reductase; P 32.4 53 0.0011 20.0 2.4 52 52-117 38-92 (141)
225 cd03034 ArsC_ArsC Arsenate Red 31.3 1.1E+02 0.0023 17.6 4.9 53 51-117 34-89 (112)
226 PF08044 DUF1707: Domain of un 31.0 76 0.0016 15.7 2.6 30 13-42 20-49 (53)
227 PF10891 DUF2719: Protein of u 31.0 42 0.0009 18.2 1.5 22 97-118 32-53 (81)
228 PF05794 Tcp11: T-complex prot 30.9 2.1E+02 0.0046 20.8 5.8 63 50-121 92-154 (441)
229 cd08327 CARD_RAIDD Caspase act 30.9 1.1E+02 0.0023 17.3 4.6 54 50-120 33-86 (94)
230 PF01885 PTS_2-RNA: RNA 2'-pho 30.4 1.2E+02 0.0026 19.4 3.8 35 10-44 26-60 (186)
231 COG5562 Phage envelope protein 30.0 40 0.00086 20.5 1.5 22 8-29 80-101 (137)
232 PF00808 CBFD_NFYB_HMF: Histon 30.0 84 0.0018 15.9 5.3 63 33-110 3-65 (65)
233 PF12419 DUF3670: SNF2 Helicas 29.9 92 0.002 18.8 3.1 57 50-109 81-138 (141)
234 KOG0506|consensus 29.7 1.3E+02 0.0027 22.8 4.1 64 37-112 87-158 (622)
235 PF15144 DUF4576: Domain of un 29.7 29 0.00063 18.8 0.8 39 15-54 39-77 (88)
236 PF05214 Baculo_p33: Baculovir 29.1 57 0.0012 21.9 2.2 89 35-126 12-100 (250)
237 PF10437 Lip_prot_lig_C: Bacte 28.8 1E+02 0.0022 16.6 4.3 33 78-110 53-86 (86)
238 PRK00819 RNA 2'-phosphotransfe 28.1 1.3E+02 0.0029 19.1 3.7 43 11-56 28-70 (179)
239 PF09873 DUF2100: Uncharacteri 27.9 1.6E+02 0.0035 19.4 4.0 16 14-29 39-54 (215)
240 KOG2301|consensus 27.6 41 0.00088 29.0 1.6 61 3-64 1420-1484(1592)
241 cd08324 CARD_NOD1_CARD4 Caspas 27.4 1.2E+02 0.0026 16.8 4.0 48 13-65 26-73 (85)
242 KOG4301|consensus 26.9 1.2E+02 0.0027 21.7 3.6 59 40-111 114-172 (434)
243 KOG3449|consensus 26.6 1.4E+02 0.0031 17.4 5.9 42 41-94 6-47 (112)
244 PF13075 DUF3939: Protein of u 26.5 43 0.00094 20.4 1.2 17 52-68 9-25 (140)
245 PF05872 DUF853: Bacterial pro 26.4 2.6E+02 0.0056 21.1 5.2 22 93-115 208-229 (502)
246 PF02671 PAH: Paired amphipath 26.3 82 0.0018 14.8 2.1 17 106-122 28-44 (47)
247 PF14003 YlbE: YlbE-like prote 25.8 68 0.0015 16.8 1.7 21 105-125 3-23 (65)
248 cd06404 PB1_aPKC PB1 domain is 25.5 1.3E+02 0.0028 16.6 3.5 17 15-31 18-34 (83)
249 PF11269 DUF3069: Protein of u 25.4 1.5E+02 0.0033 17.5 3.3 24 86-109 96-119 (121)
250 PF07765 KIP1: KIP1-like prote 25.3 1.2E+02 0.0027 16.3 3.4 37 83-121 24-60 (74)
251 cd08330 CARD_ASC_NALP1 Caspase 25.3 1.3E+02 0.0027 16.4 4.9 52 50-118 27-79 (82)
252 KOG4403|consensus 25.3 2E+02 0.0043 21.4 4.4 59 2-64 70-129 (575)
253 PF12983 DUF3867: Protein of u 25.1 1.9E+02 0.0042 18.5 5.4 49 15-66 2-50 (186)
254 KOG1785|consensus 25.1 2.9E+02 0.0062 20.4 5.5 71 34-117 173-246 (563)
255 PF13376 OmdA: Bacteriocin-pro 25.1 54 0.0012 16.7 1.3 23 103-125 7-29 (63)
256 COG1393 ArsC Arsenate reductas 24.9 1.5E+02 0.0032 17.4 3.3 51 52-116 37-90 (117)
257 PF07308 DUF1456: Protein of u 24.8 1.2E+02 0.0026 15.9 4.6 11 53-63 30-40 (68)
258 PRK09430 djlA Dna-J like membr 24.6 2.3E+02 0.0051 19.3 4.8 53 48-111 67-119 (267)
259 PF00427 PBS_linker_poly: Phyc 24.6 1.2E+02 0.0026 18.3 2.9 21 98-118 42-62 (131)
260 PF01369 Sec7: Sec7 domain; I 24.4 1.2E+02 0.0026 19.3 3.1 35 10-44 148-184 (190)
261 TIGR02736 cbb3_Q_epsi cytochro 24.3 1.1E+02 0.0023 15.5 2.2 27 88-114 18-44 (56)
262 PF08708 PriCT_1: Primase C te 24.2 1.2E+02 0.0025 15.6 4.2 29 38-66 38-66 (71)
263 PF05099 TerB: Tellurite resis 24.1 84 0.0018 18.5 2.2 17 49-65 36-52 (140)
264 PF15601 Imm42: Immunity prote 23.7 85 0.0019 19.0 2.1 30 97-126 46-75 (134)
265 PHA02335 hypothetical protein 23.5 1.2E+02 0.0026 17.6 2.6 37 85-123 11-47 (118)
266 cd00862 ProRS_anticodon_zinc P 22.9 1.8E+02 0.0039 18.8 3.7 49 14-63 94-142 (202)
267 PF00027 cNMP_binding: Cyclic 22.9 65 0.0014 16.7 1.5 16 100-115 76-91 (91)
268 PRK10853 putative reductase; P 22.8 42 0.00091 19.6 0.7 15 102-116 75-89 (118)
269 PF02269 TFIID-18kDa: Transcri 22.5 1.5E+02 0.0032 16.6 2.9 30 86-115 40-69 (93)
270 cd00059 FH Forkhead (FH), also 22.5 1.4E+02 0.0031 16.0 2.8 27 39-65 8-34 (78)
271 PF08672 APC2: Anaphase promot 22.4 1.3E+02 0.0027 15.4 3.8 33 32-65 11-45 (60)
272 PF09862 DUF2089: Protein of u 22.4 1.8E+02 0.0039 17.1 7.5 52 53-110 61-112 (113)
273 cd06403 PB1_Par6 The PB1 domai 22.1 85 0.0018 17.2 1.7 28 40-67 9-36 (80)
274 PF05383 La: La domain; Inter 21.4 50 0.0011 16.9 0.7 22 40-61 19-40 (61)
275 PF03986 Autophagy_N: Autophag 20.2 70 0.0015 19.7 1.3 14 14-27 25-38 (145)
276 cd08332 CARD_CASP2 Caspase act 20.0 1.8E+02 0.0038 16.1 5.0 56 50-122 32-89 (90)
No 1
>KOG0044|consensus
Probab=99.90 E-value=6.8e-23 Score=127.94 Aligned_cols=123 Identities=69% Similarity=1.159 Sum_probs=113.3
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
|++++|+.+|.+++|.|++.||+.++.....+..++++.++|+.+|.|++|+|+.+|+..+++.++..++..... ....
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~-~~~~ 143 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP-EDEE 143 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC-cccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999988873333 4456
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhhcCC
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDP 124 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~~~~ 124 (127)
..++.+..+|+.+|.|+||.||++||...+...|.++..++..|
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~~~ 187 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQDP 187 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhhcc
Confidence 77889999999999999999999999999999999999997755
No 2
>KOG0034|consensus
Probab=99.79 E-value=1.6e-18 Score=108.32 Aligned_cols=117 Identities=35% Similarity=0.659 Sum_probs=99.0
Q ss_pred CHHHHHhhhcCCCCCc-eeHHHHHHHHHHhcCC-cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCC
Q psy15327 1 FAEHVFRTFDANGDGT-IDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPED 78 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~-i~~~ef~~~l~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 78 (127)
|..+++..++.+++|. |++++|+..+...... ..+++++.+|+.||.+++|+|+.+|+.+++..+...... ..
T Consensus 67 ~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~-----~~ 141 (187)
T KOG0034|consen 67 LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDD-----MS 141 (187)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCc-----ch
Confidence 4679999999999998 9999999999998765 455599999999999999999999999999987532111 01
Q ss_pred CCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhhc
Q psy15327 79 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQC 122 (127)
Q Consensus 79 ~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~~ 122 (127)
.....+.++.+|..+|.++||.|+++||.+++.+.|.+.+.+..
T Consensus 142 ~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~ 185 (187)
T KOG0034|consen 142 DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTI 185 (187)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCC
Confidence 34456778899999999999999999999999999999887653
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.79 E-value=1.9e-18 Score=104.83 Aligned_cols=100 Identities=36% Similarity=0.688 Sum_probs=74.1
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhc-CCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTS-RGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
+.+++..+|. +.+.|+|.+|+.+|.... ...+++++.++|+.||.|++|+|+..+++.++..+ +..
T Consensus 58 i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l------------ge~ 124 (160)
T COG5126 58 INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL------------GER 124 (160)
T ss_pred HHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh------------ccc
Confidence 4566666666 666777777777776654 34557778888888888888888888888888766 667
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhcCh
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDP 114 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~ 114 (127)
.+.+++..+++.++++++|.|++++|++.+...|
T Consensus 125 ~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 125 LSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred CCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 7778888888888888888888888887776554
No 4
>KOG0027|consensus
Probab=99.73 E-value=7.7e-17 Score=98.56 Aligned_cols=99 Identities=30% Similarity=0.629 Sum_probs=84.5
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCc-----HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGK-----LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~-----~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 76 (127)
++.++..+|.+++|.|++.+|+.++....... ..+.+..+|+.+|.+++|+|+.+|+..++..+
T Consensus 46 l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----------- 114 (151)
T KOG0027|consen 46 LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----------- 114 (151)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-----------
Confidence 46788888999999999999999888665432 24589999999999999999999999999987
Q ss_pred CCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 77 ~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
+.+.+.+.+..+++.+|.+++|.|+|++|++++..
T Consensus 115 -g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 115 -GEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred -CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 66777899999999999999999999999988754
No 5
>KOG0027|consensus
Probab=99.71 E-value=1.9e-16 Score=96.86 Aligned_cols=104 Identities=30% Similarity=0.461 Sum_probs=91.0
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
+++.|..+|.+++|.|+..++..+++.++..++...+..++..+|.+++|.|++++|+.++........ ....
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~-------~~~~ 82 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT-------DEEA 82 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc-------cccc
Confidence 468999999999999999999999999999999999999999999999999999999999987532111 0002
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+.+..+|+.+|.+++|.||.+++..++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 4568999999999999999999999999965
No 6
>PTZ00183 centrin; Provisional
Probab=99.70 E-value=5.3e-16 Score=95.21 Aligned_cols=99 Identities=29% Similarity=0.469 Sum_probs=69.3
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
+...|..+|.+++|.|+..||..++..++.......+..+|..+|.+++|.|++++|..++.... ....
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~-----------~~~~ 87 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL-----------GERD 87 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-----------cCCC
Confidence 45677778888888888888888877666555566777778778877888888887777665431 1122
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
..+.+..+|+.+|.+++|.|+.++|..++.
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345567777777777777777777777664
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.70 E-value=6.8e-16 Score=93.78 Aligned_cols=112 Identities=27% Similarity=0.370 Sum_probs=98.1
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
+++.|..+|++++|.|++.++..+++.++..++...+..++..+|. +.+.|++.+|..++....+ ...
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~-----------~~~ 89 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK-----------RGD 89 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc-----------cCC
Confidence 5778999999999999999999999999999999999999999999 9999999999999987632 345
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhc------ChhHHHHhhcCCC
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS------DPSIVRLLQCDPQ 125 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~------~~~~~~~~~~~~~ 125 (127)
.++.+..+|+.+|.+++|.|+..+++.+++. ..++..++...+.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~ 139 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDE 139 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCC
Confidence 6789999999999999999999999999975 3346666665553
No 8
>PTZ00183 centrin; Provisional
Probab=99.66 E-value=5.6e-15 Score=90.64 Aligned_cols=102 Identities=25% Similarity=0.457 Sum_probs=90.0
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHh-cCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVT-SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
+..+|..+|.+++|.|++.+|+.++... ......+.++.+|+.+|.+++|.|+.+||..++..+ +..
T Consensus 55 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~------------~~~ 122 (158)
T PTZ00183 55 IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL------------GET 122 (158)
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh------------CCC
Confidence 5678999999999999999999988764 334566789999999999999999999999999876 456
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
.....+..+|..+|.+++|.|++++|..++...|.
T Consensus 123 l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 123 ITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 78889999999999999999999999999987764
No 9
>PTZ00184 calmodulin; Provisional
Probab=99.66 E-value=4.2e-15 Score=90.23 Aligned_cols=100 Identities=26% Similarity=0.413 Sum_probs=80.3
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
++..|..+|.+++|.|++++|..++..++.....+.+..+|..+|.+++|.|++++|..++..... ...
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-----------~~~ 81 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK-----------DTD 81 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc-----------CCc
Confidence 457888899999999999999999888776666778899999999999999999999888775421 123
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+.+..+|..+|.+++|.|+.++|..++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 4566788888888888888888888887743
No 10
>KOG0037|consensus
Probab=99.65 E-value=3.3e-15 Score=93.79 Aligned_cols=107 Identities=21% Similarity=0.373 Sum_probs=95.8
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
++-|...+|.+++|+|+++||..++..+ ..++.+|+.+|.|++|.|+..|+.+++..+ +..+
T Consensus 96 crlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~------------Gy~L 157 (221)
T KOG0037|consen 96 CRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQL------------GYRL 157 (221)
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHHc------------CcCC
Confidence 4668889999999999999999999877 789999999999999999999999999987 7788
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhhcCCCC
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQN 126 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~~~~~~ 126 (127)
+.+....+++.+|....|.|.+++|+.+|...+-+.+.|..+.++
T Consensus 158 spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~ 202 (221)
T KOG0037|consen 158 SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTA 202 (221)
T ss_pred CHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999988899999999999998888887777766654
No 11
>PTZ00184 calmodulin; Provisional
Probab=99.64 E-value=8.9e-15 Score=88.80 Aligned_cols=98 Identities=32% Similarity=0.620 Sum_probs=86.3
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhc-CCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTS-RGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
++.+|..+|.+++|.|++++|+.++.... .......+..+|..+|.+++|.|+.++|..++..+ +..
T Consensus 49 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~------------~~~ 116 (149)
T PTZ00184 49 LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL------------GEK 116 (149)
T ss_pred HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH------------CCC
Confidence 56889999999999999999999988653 34566789999999999999999999999999875 456
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.+.+.+..++..+|.+++|.|+++||..++.
T Consensus 117 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 117 LTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 6788899999999999999999999998775
No 12
>KOG0038|consensus
Probab=99.60 E-value=1.6e-14 Score=85.48 Aligned_cols=116 Identities=24% Similarity=0.486 Sum_probs=95.8
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCC-cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCC
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDE 79 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 79 (127)
|-+++.+.+..+|.|-+++.+|+..++.++.. +.+-++.++|+.+|-|+++.|.-+++...++.+.+.. .+.
T Consensus 72 fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e-------Ls~ 144 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE-------LSD 144 (189)
T ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc-------CCH
Confidence 34788999999999999999999999988654 5566899999999999999999999999999874310 011
Q ss_pred CchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhhcC
Q psy15327 80 STPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCD 123 (127)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~~~ 123 (127)
....-..++++.+.|.+++|.+++.+|..++.+.|+++..|..+
T Consensus 145 eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFHIR 188 (189)
T KOG0038|consen 145 EEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFHIR 188 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhhheec
Confidence 11223467789999999999999999999999999999877643
No 13
>KOG0028|consensus
Probab=99.59 E-value=3.6e-14 Score=85.09 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=58.4
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCch
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTP 82 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~ 82 (127)
+..|..+|++++|.|++.|+..++..++.....+.+..+..-+|+++.|.|++++|+..++..+ +...+
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~-----------~e~dt 104 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL-----------GERDT 104 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH-----------hccCc
Confidence 4456666666666666666666666666665556666666666666666666666666554432 22335
Q ss_pred HHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 83 EKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.+.+..+|+.+|.+++|.|++.+|..+...
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHH
Confidence 555666666666666666666666555543
No 14
>KOG0028|consensus
Probab=99.55 E-value=1.2e-13 Score=82.82 Aligned_cols=99 Identities=23% Similarity=0.468 Sum_probs=90.1
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHH-hcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSV-TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
..+...+|.++.|+|++.+|+..+.. ++...+.+.+..+|+.+|.+++|.|++.+|+.+...+ ++..
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL------------genl 139 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL------------GENL 139 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh------------Cccc
Confidence 45778889999999999999999875 4555688999999999999999999999999999988 8899
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhcC
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSD 113 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~ 113 (127)
+++.+.+++..+|.+++|.|.-++|..++...
T Consensus 140 tD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 140 TDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999999999999988754
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.49 E-value=2.7e-13 Score=98.23 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=81.0
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhc-CCcHHHH---HHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTS-RGKLEQK---LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPE 77 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~---~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 77 (127)
+.+.|..+|++++|.+ +..++..++ ....+.. ++.+|..+|.+++|.|+++||..++..+
T Consensus 145 lkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l------------ 208 (644)
T PLN02964 145 ACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF------------ 208 (644)
T ss_pred HHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh------------
Confidence 4577999999999997 666777776 3444443 8999999999999999999999999865
Q ss_pred CCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcC
Q psy15327 78 DESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSD 113 (127)
Q Consensus 78 ~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~ 113 (127)
+...+++.+..+|+.+|.+++|.|+++||..++...
T Consensus 209 g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 209 GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 334567889999999999999999999999998774
No 16
>KOG0036|consensus
Probab=99.45 E-value=8.5e-13 Score=89.82 Aligned_cols=97 Identities=30% Similarity=0.497 Sum_probs=78.4
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
++.+|..+|.+.+|.++|+||...+. ..+.++..+|...|.++||.|+.+|+.+.++.+ +.++
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~------------gi~l 115 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL------------GIQL 115 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHh------------CCcc
Confidence 45667777777777777777777776 345677778888888888888888888888776 6788
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
..+.+.++|+..|+++++.|+++||...+...|+
T Consensus 116 ~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 116 SDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred CHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 8899999999999999999999999999887774
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=3.5e-13 Score=71.29 Aligned_cols=61 Identities=33% Similarity=0.556 Sum_probs=54.1
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC----cHHHHHHhhhhhhccCCCCcccHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG----KLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~----~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l 62 (127)
++++|..+|.+++|.|+.+|+..++..+... ...+.++.+|+.+|.+++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6889999999999999999999999988743 345677888999999999999999998764
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=3.1e-13 Score=71.48 Aligned_cols=66 Identities=33% Similarity=0.685 Sum_probs=54.5
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
+++.+|+.+|.+++|+|+.+||..++..+.... ......+.+..+|+.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~--------~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM--------SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS--------THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc--------cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 468899999999999999999999999862211 123455677888999999999999999999875
No 19
>KOG0037|consensus
Probab=99.43 E-value=4.3e-12 Score=79.92 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=88.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHh-cCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVT-SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
+...|..+|.+..|.|+-+|+..+|... ....+.+.++.+..++|.+.+|.|+++||..++..+
T Consensus 59 ~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--------------- 123 (221)
T KOG0037|consen 59 LAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--------------- 123 (221)
T ss_pred HHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH---------------
Confidence 4578999999999999999999999844 345677899999999999999999999999999987
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhc-----ChhHHHH
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS-----DPSIVRL 119 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~-----~~~~~~~ 119 (127)
..++.+|+.+|.|++|.|+..|+..+|.. .|.+.++
T Consensus 124 ---~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~ 164 (221)
T KOG0037|consen 124 ---NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNL 164 (221)
T ss_pred ---HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHH
Confidence 67999999999999999999999999976 4555444
No 20
>KOG0044|consensus
Probab=99.40 E-value=5.1e-12 Score=79.37 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=85.1
Q ss_pred HHHHHhhhcCCC-CCceeHHHHHHHHHHhcC-CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCC
Q psy15327 2 AEHVFRTFDANG-DGTIDFREFLCALSVTSR-GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDE 79 (127)
Q Consensus 2 ~~~~f~~~d~~~-~g~i~~~ef~~~l~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 79 (127)
++.+++.|-.+. +|.++-++|..++..... ..+...++.+|+.+|.+++|.|++.||+.++..+. .
T Consensus 28 i~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~------------r 95 (193)
T KOG0044|consen 28 IQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS------------R 95 (193)
T ss_pred HHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc------------C
Confidence 455666665544 799999999999998864 67888999999999999999999999999998873 3
Q ss_pred CchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 80 STPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
+..++.++.+|+.+|.+++|+|+++|+..+++.
T Consensus 96 Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 96 GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred CcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 567778888999999999999999999998854
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.32 E-value=1e-11 Score=69.19 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=57.0
Q ss_pred HHHHhhhhhhcc-CCCCcccHHHHHHHHHH-HHHHhccccCCCCCCCchH-HHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDL-DGNGYISRNEMLEIVQA-IYKMVGTVMKMPEDESTPE-KRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~-~~~g~i~~~ef~~~l~~-~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|+.||. +++|.|+.+|++.+++. + +..++. +.+..+++.+|.|++|.|+|+||..++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el------------g~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL------------PHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh------------hhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 467889999999 99999999999999998 5 333444 78999999999999999999999998865
No 22
>KOG0031|consensus
Probab=99.31 E-value=1.1e-10 Score=69.90 Aligned_cols=97 Identities=21% Similarity=0.378 Sum_probs=80.3
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCc---------------------------------HHHHHHhhhhhhccCC
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGK---------------------------------LEQKLRWAFSMYDLDG 49 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~---------------------------------~~~~~~~~f~~~d~~~ 49 (127)
++-|..+|+|.+|.|+.+++...+.+++... +++.+..+|+.||.++
T Consensus 35 KEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~ 114 (171)
T KOG0031|consen 35 KEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEG 114 (171)
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccC
Confidence 5778999999999999999999998876543 4556777888888888
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
+|.|..+.++.+|... +...+.+++..+|..+-.+..|.+.|..|..++.
T Consensus 115 ~G~I~~d~lre~Ltt~------------gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 115 SGKIDEDYLRELLTTM------------GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CCccCHHHHHHHHHHh------------cccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 8888888888888765 6677888888888888777888888888888775
No 23
>KOG0030|consensus
Probab=99.30 E-value=4e-11 Score=70.56 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=89.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccC--CCCcccHHHHHHHHHHHHHHhccccCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLD--GNGYISRNEMLEIVQAIYKMVGTVMKMPEDE 79 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~--~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 79 (127)
++++|..||..++|+|++.+...+|+.++.++++..+.+....++++ +--+|++++|.-.+..+.+. ..
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn---------k~ 83 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN---------KD 83 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc---------cc
Confidence 47899999999999999999999999999999999999999988777 45689999999999988542 23
Q ss_pred CchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 80 STPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
+.+.+..-+-++.+|++++|.|...+++.+|..
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 556777888899999999999999999999865
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=2.4e-11 Score=67.65 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=58.0
Q ss_pred HHHHHhhhcC-CCCCceeHHHHHHHHHH-hcCCcHH-HHHHhhhhhhccCCCCcccHHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDA-NGDGTIDFREFLCALSV-TSRGKLE-QKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66 (127)
Q Consensus 2 ~~~~f~~~d~-~~~g~i~~~ef~~~l~~-~~~~~~~-~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 66 (127)
+...|..+|. +++|.|+..|++.++.. ++...+. +.+..+++.+|.|++|.|+++||...+..+.
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4678999999 99999999999999998 6655555 7899999999999999999999999888763
No 25
>KOG0036|consensus
Probab=99.24 E-value=1.4e-10 Score=79.21 Aligned_cols=94 Identities=20% Similarity=0.350 Sum_probs=85.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC-cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
++.+|+.+|.+++|.++..+....+..+..+ ...+.++.+|+..|.|.+|.++++||...+..
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~---------------- 79 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN---------------- 79 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH----------------
Confidence 5789999999999999999999999988776 77888999999999999999999999999875
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.+..+..+|..+|.+.||.|..+|..+.+..
T Consensus 80 -~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 80 -KELELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred -hHHHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 4567899999999999999999999888865
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.23 E-value=9.4e-11 Score=65.29 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=57.5
Q ss_pred HHHHhhhhhhc-cCCCC-cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYD-LDGNG-YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|+.+| .+++| .|+.+|++.+++.-+.... +...+++.+..+++.+|.+++|.|++++|..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-------g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-------EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-------cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46888999998 79999 5999999999997211110 44567788999999999999999999999988753
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.20 E-value=1.4e-10 Score=64.55 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=57.9
Q ss_pred HHHHHhhhc-CCCCC-ceeHHHHHHHHHH-----hcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRTFD-ANGDG-TIDFREFLCALSV-----TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-----~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+.+.|..+| .+++| .|+..++..+|.. ++...+++.+..+++.+|.+++|.|++++|..++..+
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 568899998 79999 6999999999998 7777778889999999999999999999999988765
No 28
>KOG0377|consensus
Probab=99.18 E-value=4.4e-10 Score=77.65 Aligned_cols=103 Identities=22% Similarity=0.385 Sum_probs=85.5
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcC-Cc----------------------------------------------H
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSR-GK----------------------------------------------L 34 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~----------------------------------------------~ 34 (127)
+++-|+++|+...|+|+..++..++..... +. .
T Consensus 466 L~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ 545 (631)
T KOG0377|consen 466 LEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRN 545 (631)
T ss_pred HHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhc
Confidence 456789999999999999999999875311 00 1
Q ss_pred HHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 35 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
...++.+|+.+|.|++|.|+.+||..++..+.+.++ ...+.+++..+-...|.++||.|+++||.+++..
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~--------~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN--------GAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC--------CCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 235778999999999999999999999998876555 3567788999999999999999999999998853
No 29
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.17 E-value=1.5e-10 Score=59.74 Aligned_cols=61 Identities=36% Similarity=0.542 Sum_probs=56.9
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l 62 (127)
+..+|..+|.+++|.|++.+|..++..++...+.+.+..+|..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 6789999999999999999999999998888888999999999999999999999998765
No 30
>KOG0034|consensus
Probab=99.14 E-value=1.1e-09 Score=68.83 Aligned_cols=96 Identities=24% Similarity=0.371 Sum_probs=78.5
Q ss_pred HHHHHhhhcCC-CCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCc-ccHHHHHHHHHHHHHHhccccCCCCCC
Q psy15327 2 AEHVFRTFDAN-GDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGY-ISRNEMLEIVQAIYKMVGTVMKMPEDE 79 (127)
Q Consensus 2 ~~~~f~~~d~~-~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~-i~~~ef~~~l~~~~~~~~~~~~~~~~~ 79 (127)
+...|..++.+ +.|.++.+||..+.....+ .....+++.++.+++|. |++++|...+..++. .
T Consensus 35 L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N----p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~-----------~ 99 (187)
T KOG0034|consen 35 LYERFKKLDRNNGDGYLTKEEFLSIPELALN----PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP-----------K 99 (187)
T ss_pred HHHHHHHhccccccCccCHHHHHHHHHHhcC----cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcC-----------C
Confidence 45678999998 9999999999999854322 35667889999988888 999999999988731 2
Q ss_pred CchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 80 STPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
...++.++-+|+.+|.+++|.|+.+|+..++..
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 233457899999999999999999999998853
No 31
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.13 E-value=3.7e-10 Score=59.61 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=52.5
Q ss_pred HhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 39 RWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 39 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
+.+|..+|.+++|.|+.+|+..++..+ ..+.+.+..++..+|.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--------------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--------------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--------------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 468999999999999999999999864 236678999999999999999999999988754
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.13 E-value=4.3e-10 Score=63.49 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=56.5
Q ss_pred HHHHhhhhhhcc-CC-CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDL-DG-NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~-~~-~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|..+|. ++ +|.|+.+|+..+++..... ..+...+.+.+..++..+|.+++|.|++++|..++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~-------~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE-------FLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH-------HhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 568889999997 87 6999999999999862110 0023456788999999999999999999999998864
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=5.2e-10 Score=63.37 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=56.4
Q ss_pred HHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 35 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
...+..+|..+|.+++|.|+.+++..+++.. +.+.+.+..++..+|.+++|.|++++|..++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--------------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS--------------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--------------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3578889999999999999999999999863 346678999999999999999999999998854
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.12 E-value=4.2e-10 Score=59.37 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=54.9
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+++|..+|.+++|.|+..|+..++...+ .+.+.++.+|..+|.+++|.|+++||...+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999998764 366789999999999999999999999988765
No 35
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.11 E-value=5.9e-10 Score=62.92 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=55.7
Q ss_pred HHHHHhhhcC-CC-CCceeHHHHHHHHHH-----hcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDA-NG-DGTIDFREFLCALSV-----TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~~d~-~~-~g~i~~~ef~~~l~~-----~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+...|..+|. ++ +|.|+..|+..++.. ++...+.+.+..+++.+|.+++|.|++++|..++..+
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4678999997 87 699999999999986 3445677899999999999999999999999988765
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=6.3e-10 Score=62.65 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=54.5
Q ss_pred HHHHHhhhc-CCCCC-ceeHHHHHHHHHHh-----cCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRTFD-ANGDG-TIDFREFLCALSVT-----SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~~d-~~~~g-~i~~~ef~~~l~~~-----~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+.++|..+| .+++| +|+..|+..++... ........+..+++.+|.+++|.|+++||..++..+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 457799999 78998 69999999999763 223456789999999999999999999999999876
No 37
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=7.4e-10 Score=57.02 Aligned_cols=61 Identities=38% Similarity=0.710 Sum_probs=54.6
Q ss_pred HHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 38 LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 38 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
+..+|..+|.+++|.|+++++..++..+ +.+.+.+.+..+|..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL------------GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh------------CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999876 456778889999999999999999999998765
No 38
>KOG2562|consensus
Probab=99.10 E-value=5.6e-10 Score=77.28 Aligned_cols=114 Identities=15% Similarity=0.306 Sum_probs=93.5
Q ss_pred CHHHHHhhh----cCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCC
Q psy15327 1 FAEHVFRTF----DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76 (127)
Q Consensus 1 ~~~~~f~~~----d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 76 (127)
++.|+|..+ -...+|+++|.+|+.++..+........++++|+.+|.+++|.|+..|+..+.+..++.+..+...
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e- 390 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQE- 390 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCC-
Confidence 467888833 335579999999999999988888888999999999999999999999999999998887654433
Q ss_pred CCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHH
Q psy15327 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVR 118 (127)
Q Consensus 77 ~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~ 118 (127)
....++.+.+++....+...++||.++|.. .+....+..
T Consensus 391 --~l~fed~l~qi~DMvkP~~~~kItLqDlk~-skl~~~v~n 429 (493)
T KOG2562|consen 391 --ALPFEDALCQIRDMVKPEDENKITLQDLKG-SKLAGTVFN 429 (493)
T ss_pred --cccHHHHHHHHHHHhCccCCCceeHHHHhh-ccccchhhh
Confidence 344578889999999989999999999988 444444433
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.10 E-value=3.9e-10 Score=57.15 Aligned_cols=52 Identities=37% Similarity=0.526 Sum_probs=47.5
Q ss_pred CCCceeHHHHHHHHHHhcCC-cHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 13 GDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 13 ~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
.+|.|+.++|..++..++.. .+.+.+..+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999877777 88888999999999999999999999998864
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.10 E-value=7.2e-10 Score=62.33 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=58.3
Q ss_pred HHHHHhhhhhhc-cCCCC-cccHHHHHHHHHH-HHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 35 EQKLRWAFSMYD-LDGNG-YISRNEMLEIVQA-IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 35 ~~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.+.+..+|..+| .+++| .|+..|+..+++. +...+ +...+.+.+..++..+|.+++|.|++++|..++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~--------~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFL--------DAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHc--------cCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 357889999997 99999 5999999999975 31101 1234667899999999999999999999999887
Q ss_pred cChh
Q psy15327 112 SDPS 115 (127)
Q Consensus 112 ~~~~ 115 (127)
....
T Consensus 80 ~~~~ 83 (92)
T cd05025 80 ALTV 83 (92)
T ss_pred HHHH
Confidence 5433
No 41
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.10 E-value=7.7e-10 Score=62.31 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=55.6
Q ss_pred HHHHhhhhhhc-cCCCC-cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYD-LDGNG-YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d-~~~~g-~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|..+| .+++| .|+.+|++.++....... .........+..++..+|.+++|.|+++||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~-------~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDF-------LSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHh-------cccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 36778899998 78998 599999999997632110 012335678999999999999999999999998865
No 42
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.10 E-value=7.1e-10 Score=62.34 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=55.7
Q ss_pred HHHHHhhhc-CCCCC-ceeHHHHHHHHHH-hcC----CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRTFD-ANGDG-TIDFREFLCALSV-TSR----GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~~d-~~~~g-~i~~~ef~~~l~~-~~~----~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+++.|..+| .+++| .|+..|+..++.. ++. ..+.+.++.+++.+|.+++|.|++++|..++..+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 578999997 99999 5999999999975 432 3467789999999999999999999999988876
No 43
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.08 E-value=9.1e-10 Score=62.39 Aligned_cols=65 Identities=25% Similarity=0.391 Sum_probs=57.7
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~ 68 (127)
+++.|..+|.+++|.|+..++..++...+ .+.+.+..+++.+|.+++|.|+++||..++..+.+.
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998753 566789999999999999999999999998877543
No 44
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.08 E-value=8.8e-10 Score=64.27 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=54.0
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
....+...|..+|.|++|.|+.+|+..+. + ...+..+..+|..+|.+++|.||++||...+.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--------------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--------------DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--------------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 45679999999999999999999999765 1 224577889999999999999999999999843
No 45
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.07 E-value=1.1e-09 Score=61.02 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=56.6
Q ss_pred HHHHhhhhhhcc--CCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDL--DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~--~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|..+|. +++|.|+.+++..+++..+.. ..+...+.+.+..++..+|.+++|.|++++|+.++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-------~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-------FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-------hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 568889999999 899999999999999763110 0012235788999999999999999999999998864
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.06 E-value=6.8e-10 Score=56.27 Aligned_cols=52 Identities=29% Similarity=0.563 Sum_probs=45.9
Q ss_pred CCCcccHHHHHHHHHHHHHHhccccCCCCCCC-chHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 49 GNGYISRNEMLEIVQAIYKMVGTVMKMPEDES-TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 49 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
++|.|+.++|..+++.+ +.. .+.+.+..+|..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~------------g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL------------GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT------------TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh------------CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999654 455 78889999999999999999999999998853
No 47
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.06 E-value=1.2e-09 Score=60.79 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=56.0
Q ss_pred HHHhhhhhhcc-CC-CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDL-DG-NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 37 ~~~~~f~~~d~-~~-~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.+-.+|..++. ++ +|.|+.+||+.+++... +.+...+.+.+..+++.+|.+++|.|+|++|..++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~---------~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKEL---------TIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHH---------hcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 56678999998 66 89999999999997421 1145678899999999999999999999999988864
No 48
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.04 E-value=1.6e-09 Score=60.37 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHhhhcC-CC-CCceeHHHHHHHHHH---hcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDA-NG-DGTIDFREFLCALSV---TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~~d~-~~-~g~i~~~ef~~~l~~---~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+-.+|..+|. ++ +|.|+..||+.++.. ++...+.+.+..+++.+|.+++|.|+++||...+..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3468999997 66 799999999999973 4666788899999999999999999999999988876
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=98.99 E-value=1.5e-09 Score=79.22 Aligned_cols=64 Identities=23% Similarity=0.402 Sum_probs=59.8
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
|++++|..+|.+++|.|++.||+.++..++...+++.++.+|+.+|.|++|.|+.+||..++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4789999999999999999999999998877777889999999999999999999999999887
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.98 E-value=3.2e-09 Score=59.13 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHHHHhhhcC--CCCCceeHHHHHHHHHH-hcCC----cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDA--NGDGTIDFREFLCALSV-TSRG----KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~~d~--~~~g~i~~~ef~~~l~~-~~~~----~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
++..|..+|. +++|.|+..++..++.. ++.. ...+.+..++..+|.+++|.|++++|..++...
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678999999 89999999999999975 3322 347889999999999999999999999988765
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.97 E-value=8e-09 Score=57.63 Aligned_cols=70 Identities=21% Similarity=0.384 Sum_probs=55.3
Q ss_pred HHHHhhhhh-hccCCCC-cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSM-YDLDGNG-YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~-~d~~~~g-~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|.. .|.+++| .|+.+||..++...+.... +.......+..+++.+|.+++|.|+++||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-------~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-------KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-------cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457788888 6788876 9999999999987532111 12345678999999999999999999999998854
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.95 E-value=6.9e-09 Score=57.87 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=54.0
Q ss_pred HHHHHhh-hcCCCCC-ceeHHHHHHHHHHhc-----CCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 2 AEHVFRT-FDANGDG-TIDFREFLCALSVTS-----RGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 2 ~~~~f~~-~d~~~~g-~i~~~ef~~~l~~~~-----~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+..+|.. +|.+++| .|+..||..++.... .......+..+++.+|.|++|.|+++||..++..+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567888 7787876 999999999998753 24456789999999999999999999999988775
No 53
>KOG0030|consensus
Probab=98.94 E-value=1.2e-08 Score=60.29 Aligned_cols=85 Identities=19% Similarity=0.393 Sum_probs=72.7
Q ss_pred CCceeHHHHHHHHHHhcCC---cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q psy15327 14 DGTIDFREFLCALSVTSRG---KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIF 90 (127)
Q Consensus 14 ~g~i~~~ef~~~l~~~~~~---~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (127)
-.+|+|++|+..+..+.+. ..-+.+-.-.+.||++++|.|...|++.++..+ |+.++++++..++
T Consensus 63 ~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl------------Gekl~eeEVe~Ll 130 (152)
T KOG0030|consen 63 VKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL------------GEKLTEEEVEELL 130 (152)
T ss_pred hhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH------------HhhccHHHHHHHH
Confidence 3789999999999988654 344567777899999999999999999999988 7788999999998
Q ss_pred HhcCcCCCCcccHHHHHHHHh
Q psy15327 91 RQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 91 ~~~d~~~~g~is~~ef~~~l~ 111 (127)
.-. .|.+|.|.|+.|++.+.
T Consensus 131 ag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 131 AGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccc-cccCCcCcHHHHHHHHh
Confidence 876 57889999999998653
No 54
>PF14658 EF-hand_9: EF-hand domain
Probab=98.94 E-value=4.7e-09 Score=54.61 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=57.3
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcC-CcHHHHHHhhhhhhccCCC-CcccHHHHHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSR-GKLEQKLRWAFSMYDLDGN-GYISRNEMLEIVQA 64 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~f~~~d~~~~-g~i~~~ef~~~l~~ 64 (127)
..|.++|.++.|.|...+++..|+.... .+.+..++.+...+|+++. |.|+++.|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999988 8889999999999999998 99999999999874
No 55
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.93 E-value=5.8e-09 Score=60.85 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=50.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l 62 (127)
+.-.|..+|.|++|.|+..|+..+. ....+..+..+|..+|.|++|.||++||...+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4568999999999999999999876 23456678899999999999999999999988
No 56
>KOG4223|consensus
Probab=98.91 E-value=8.7e-09 Score=68.66 Aligned_cols=95 Identities=24% Similarity=0.477 Sum_probs=73.1
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC-----cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG-----KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~-----~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 76 (127)
+++...-.|+|++|+|++.||+.-+...... -....-+..+...|+|++|+++.+|++..+. +
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~------------P 269 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL------------P 269 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC------------C
Confidence 4556677888999999999998887765421 1123455778888999999999999885552 3
Q ss_pred CCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 77 ~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
.+......++..++...|.|++|++|++|.+.
T Consensus 270 ~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 270 SEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred CCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 45566778899999999999999999999543
No 57
>KOG4666|consensus
Probab=98.88 E-value=6.3e-09 Score=69.48 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=88.3
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC-cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
++.+|..||.+++|.++|.+.+..+..++.. .....++..|++|+...||.++-.++..+++... .
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-------------g 327 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-------------G 327 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-------------C
Confidence 4678999999999999999999999988765 5677899999999999999999988777776642 2
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHH
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRL 119 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~ 119 (127)
...-.+...|..++...+|+|++++|.++....|.+...
T Consensus 328 v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 328 VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred cceeeccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 233346678999999999999999999999999987643
No 58
>KOG4223|consensus
Probab=98.84 E-value=2e-08 Score=67.00 Aligned_cols=104 Identities=24% Similarity=0.356 Sum_probs=76.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC-cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
-++.|...|.|++|.++.+||..+|.--..+ ...-.++....-.|+|++|+|+++||..=+... .+ -...+.
T Consensus 165 De~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~---~~----~~~epe 237 (325)
T KOG4223|consen 165 DEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH---EG----NEEEPE 237 (325)
T ss_pred HHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc---cC----CCCCcc
Confidence 3678999999999999999999999744333 334466777888999999999999987665542 11 111111
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
....+-..++...|+|++|+++-+|++.++..
T Consensus 238 Wv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P 269 (325)
T KOG4223|consen 238 WVLTEREQFFEFRDKNKDGKLDGDELLDWILP 269 (325)
T ss_pred cccccHHHHHHHhhcCCCCccCHHHHhcccCC
Confidence 12223447788899999999999999988764
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=98.81 E-value=2.9e-08 Score=51.69 Aligned_cols=61 Identities=16% Similarity=0.422 Sum_probs=54.5
Q ss_pred hhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCC-CchHHHHHHHHHhcCcCCC-CcccHHHHHHHHhc
Q psy15327 40 WAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDE-STPEKRTDKIFRQMDKNQD-GRLSLEEFIEGAKS 112 (127)
Q Consensus 40 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~~~~-g~is~~ef~~~l~~ 112 (127)
.+|..+|.++.|.|...++..+++.+ +. ...+..+..+...+|+++. |.|++++|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~------------~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV------------TGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH------------cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999987 33 6677889999999999987 99999999998864
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.78 E-value=1.5e-08 Score=44.56 Aligned_cols=27 Identities=44% Similarity=0.811 Sum_probs=17.9
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSV 28 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~ 28 (127)
++++|+.+|.|++|.|+++||+.+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456667777777777777777666653
No 61
>KOG2643|consensus
Probab=98.75 E-value=4.5e-08 Score=67.68 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=70.4
Q ss_pred cCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhcc----ccCCCCCCCchHHH
Q psy15327 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGT----VMKMPEDESTPEKR 85 (127)
Q Consensus 10 d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~----~~~~~~~~~~~~~~ 85 (127)
+.+.+|.|+|.||+-++..+. .++..++.+|+++|.|++|-|+.+||..+.+.+.+-... -...+.+... ...
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~-~~~ 285 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSF-KVE 285 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCcccccee-hhh
Confidence 456789999999999999774 455678999999999999999999999888665542111 1111111111 112
Q ss_pred HHHH--HHhcCcCCCCcccHHHHHHHHhcCh
Q psy15327 86 TDKI--FRQMDKNQDGRLSLEEFIEGAKSDP 114 (127)
Q Consensus 86 ~~~~--f~~~d~~~~g~is~~ef~~~l~~~~ 114 (127)
++.. ..-+.+++++.+++++|.+++....
T Consensus 286 ~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq 316 (489)
T KOG2643|consen 286 VNSALLTYFFGKRGNGKLSIDEFLKFQENLQ 316 (489)
T ss_pred hhhhHHHHhhccCCCccccHHHHHHHHHHHH
Confidence 2222 2346778888999999999886533
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.74 E-value=6.6e-08 Score=53.87 Aligned_cols=70 Identities=27% Similarity=0.411 Sum_probs=53.2
Q ss_pred HHHHhhhhhhccC--CCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDLD--GNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~~--~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+-.+|..++.. .+|.|+.+|+..++...+.... ......+.+..+|..+|.+++|.|++++|..++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~-------t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL-------KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh-------ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3566778888765 4789999999999974321000 01233788999999999999999999999998864
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.73 E-value=1.3e-08 Score=44.72 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=25.6
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
+++.+|+.+|+|++|.|+++||+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3678999999999999999999999875
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.72 E-value=7e-08 Score=53.78 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHHhhhcCC--CCCceeHHHHHHHHHH-hcCCcH----HHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 3 EHVFRTFDAN--GDGTIDFREFLCALSV-TSRGKL----EQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 3 ~~~f~~~d~~--~~g~i~~~ef~~~l~~-~~~~~~----~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
-++|..++.. .+|.|+..|+..++.. ++...+ .+.+..+|+.+|.+++|.|++++|..++..+
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4678888865 4789999999999974 433344 7889999999999999999999999988765
No 65
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.64 E-value=2e-07 Score=45.93 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=42.3
Q ss_pred ceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 16 TIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 16 ~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
++++.|...+|+.+.....++.+..+|+..|.+++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999998764
No 66
>KOG0031|consensus
Probab=98.60 E-value=6.5e-07 Score=53.95 Aligned_cols=92 Identities=15% Similarity=0.304 Sum_probs=65.7
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHh---------cccc------------CCCCCCCchHHHHHHHHHh
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV---------GTVM------------KMPEDESTPEKRTDKIFRQ 92 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~---------~~~~------------~~~~~~~~~~~~~~~~f~~ 92 (127)
.-++++.+|..+|+|+||.|+.+++...+.++.+.. +... +.......+++.+..+|+.
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~ 109 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKT 109 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 346899999999999999999999999888764310 0000 0000123346778999999
Q ss_pred cCcCCCCcccHHHHHHHHhcC------hhHHHHhhcCCC
Q psy15327 93 MDKNQDGRLSLEEFIEGAKSD------PSIVRLLQCDPQ 125 (127)
Q Consensus 93 ~d~~~~g~is~~ef~~~l~~~------~~~~~~~~~~~~ 125 (127)
+|.++.|.|.-+.++.+|... .++-.++...|.
T Consensus 110 FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~ 148 (171)
T KOG0031|consen 110 FDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPI 148 (171)
T ss_pred cCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCc
Confidence 999999999999999999652 335556555554
No 67
>KOG0040|consensus
Probab=98.56 E-value=3.4e-07 Score=71.41 Aligned_cols=96 Identities=18% Similarity=0.359 Sum_probs=77.8
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCc-------HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCC
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGK-------LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~-------~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 76 (127)
-+|..||.+.+|.+++.+|..||+.++... ++..++.+...+|++.+|+|+..++..++-.= .+
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~---------ET 2327 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK---------ET 2327 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc---------cc
Confidence 479999999999999999999999987653 34589999999999999999999999888641 11
Q ss_pred CCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 77 ~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
..-.+.+.++.+|+.++. +..+|+.++...-|
T Consensus 2328 -eNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2328 -ENILSSEEIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred -ccccchHHHHHHHHHhhc-CCccccHHHHHhcC
Confidence 223345689999999988 67778887775444
No 68
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.47 E-value=1.7e-06 Score=48.13 Aligned_cols=62 Identities=6% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHh-----cCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVT-----SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
-.+|..+. ...+.++..||...+..- .....+..+..+++.+|.|+||.|++.||..++..+
T Consensus 11 I~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 11 MLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45788886 446799999999999642 233456789999999999999999999999998876
No 69
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.43 E-value=6.6e-07 Score=62.36 Aligned_cols=53 Identities=34% Similarity=0.528 Sum_probs=47.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
++.+|..+|.+++|.|+..||.. +..+|..+|.|++|.|+++||..++...++
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999952 467899999999999999999999987654
No 70
>KOG0041|consensus
Probab=98.43 E-value=4.7e-06 Score=52.47 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=73.7
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
...+|..+|.+.||.|++.|+...|..++.+...-.++.+...+|.|.+|+|++.||.-+++.... ++-.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa----------gEL~ 170 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA----------GELQ 170 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc----------cccc
Confidence 467899999999999999999999999998888888999999999999999999999988887643 1111
Q ss_pred hHHHHHHH--HHhcCcCCCCcccHHHHHH
Q psy15327 82 PEKRTDKI--FRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 82 ~~~~~~~~--f~~~d~~~~g~is~~ef~~ 108 (127)
.+.....+ ....|-...|..-...|-.
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 12223333 3346766677665555544
No 71
>KOG0041|consensus
Probab=98.38 E-value=1.9e-06 Score=54.20 Aligned_cols=65 Identities=22% Similarity=0.441 Sum_probs=57.8
Q ss_pred HHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+|..+|.+.||+|++.|++..+..+ +.+.+.--+..+++..|.|.+|.||+.+|.-++..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL------------gapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL------------GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh------------CCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 467788999999999999999999999988 66667777899999999999999999999887754
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.37 E-value=6.8e-06 Score=45.73 Aligned_cols=68 Identities=16% Similarity=0.428 Sum_probs=53.0
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.+-.+|..+- ...+.++..||...+..-+..+- ..+.....+..+++.+|.|+||.|+++||..++..
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l-------~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFL-------KNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHH-------cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4556788885 55678999999999987544222 12345678999999999999999999999998864
No 73
>KOG2643|consensus
Probab=98.37 E-value=2.1e-06 Score=59.67 Aligned_cols=92 Identities=25% Similarity=0.426 Sum_probs=69.6
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcCCc---------------HHHHHH--hhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSRGK---------------LEQKLR--WAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~---------------~~~~~~--~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
.|..+|.|++|.|+.+||....+...... -...+. ..-..|..++++.++.++|.+++..+
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L-- 315 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL-- 315 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH--
Confidence 47789999999999999999886432110 010111 23345678999999999999999987
Q ss_pred HhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 68 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..+..+.-|..+++..+|.|+-.+|..++..
T Consensus 316 --------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 316 --------------QEEILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred --------------HHHHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 4477777899999988899999999988743
No 74
>KOG0377|consensus
Probab=98.35 E-value=1.8e-06 Score=60.34 Aligned_cols=65 Identities=28% Similarity=0.388 Sum_probs=57.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcC----CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSR----GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 66 (127)
++-+|..+|.+++|.|+..||..++..+.. ......+-.+-+.+|-|+||.|++.||.++++...
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 467899999999999999999999987643 46778888999999999999999999999998763
No 75
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.34 E-value=2.4e-06 Score=42.09 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
++++.|+..+++.+ ...+.+..+..+|+..|++++|.+.-+||..++.
T Consensus 1 kmsf~Evk~lLk~~------------NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM------------NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHT------------T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------------ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 37899999999887 6788899999999999999999999999999875
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.32 E-value=1.3e-06 Score=38.89 Aligned_cols=26 Identities=42% Similarity=0.782 Sum_probs=15.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALS 27 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~ 27 (127)
++.+|..+|.+++|.|+..||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 34566666666666666666666665
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.32 E-value=1.3e-06 Score=36.95 Aligned_cols=22 Identities=45% Similarity=0.930 Sum_probs=12.4
Q ss_pred HHHHhhhcCCCCCceeHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLC 24 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~ 24 (127)
+..|..+|.|++|.|++.||..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 4455555555555555555554
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.31 E-value=7.9e-07 Score=39.65 Aligned_cols=27 Identities=44% Similarity=0.833 Sum_probs=24.1
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHH
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQ 63 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~ 63 (127)
+++.+|+.+|.+++|.|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999997
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.29 E-value=4.8e-06 Score=58.15 Aligned_cols=57 Identities=35% Similarity=0.687 Sum_probs=49.0
Q ss_pred CCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 31 RGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 31 ~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
.....+.++.+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||...+
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 345567889999999999999999999831 3567999999999999999999988
Q ss_pred hc
Q psy15327 111 KS 112 (127)
Q Consensus 111 ~~ 112 (127)
..
T Consensus 384 ~~ 385 (391)
T PRK12309 384 GA 385 (391)
T ss_pred HH
Confidence 64
No 80
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=1.2e-06 Score=37.14 Aligned_cols=25 Identities=44% Similarity=0.676 Sum_probs=22.0
Q ss_pred HHhhhhhhccCCCCcccHHHHHHHH
Q psy15327 38 LRWAFSMYDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 38 ~~~~f~~~d~~~~g~i~~~ef~~~l 62 (127)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998754
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.24 E-value=6.9e-06 Score=47.07 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=52.5
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
.++|...++ .+|.|+..+.+.++.. .+.+.+.+..||...|.+++|.++.+||.-++..+..
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 568888885 5799999999998874 3567789999999999999999999999999987754
No 82
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.22 E-value=1e-05 Score=46.32 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=55.6
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
...+....+|..++. ++|.|+.++.+.++.. .+++.+.+..|+...|.+++|.++.+||.-++..
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~--------------S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMK--------------SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH--------------TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH--------------cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 455678889999985 6899999999998876 3778899999999999999999999999987754
No 83
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.05 E-value=1.7e-06 Score=50.42 Aligned_cols=63 Identities=27% Similarity=0.603 Sum_probs=45.9
Q ss_pred CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 32 GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 32 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
......+...|..+|.|++|.|+..|+..+...+ ...+..+...+...|.|++|.||..|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--------------~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--------------MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--------------STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--------------hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456688999999999999999999987665432 33456788899999999999999999864
No 84
>KOG4065|consensus
Probab=97.97 E-value=5.5e-05 Score=43.60 Aligned_cols=77 Identities=27% Similarity=0.348 Sum_probs=52.5
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhcccc-CCCCC-CCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVM-KMPED-ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
+++.---.|.+.|-|++|.++.-|+..+++.......... +.+.. +...+..+..+++--|.|++|.|+|.||.+..
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 3333334689999999999999999999998766322211 22221 12223445666777789999999999998753
No 85
>KOG0169|consensus
Probab=97.96 E-value=6.2e-05 Score=55.78 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=81.8
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCC
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~ 80 (127)
|+..+|..+|.+.+|.+++.+-..++..+........+..+|+..+..+++.+...++..+...+ .
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~--------------~ 202 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL--------------T 202 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh--------------c
Confidence 78899999999999999999999999999999999999999999999999999999999988765 1
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
... .+..+|..+..+ .+.++.+++..++..
T Consensus 203 ~rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 203 KRP-EVYFLFVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred cCc-hHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 122 577777777543 778888888888865
No 86
>KOG4251|consensus
Probab=97.92 E-value=3e-05 Score=50.52 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=48.5
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC---cHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG---KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
+..+|.+.|.+-+|+|+..|....+..-... ...+.-+..|+.+|++++|.|+++||.--+..
T Consensus 103 lmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3568999999999999999999887643211 22234566799999999999999999875543
No 87
>KOG0751|consensus
Probab=97.91 E-value=9.7e-05 Score=52.61 Aligned_cols=99 Identities=25% Similarity=0.346 Sum_probs=69.8
Q ss_pred hhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCC---------
Q psy15327 7 RTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPE--------- 77 (127)
Q Consensus 7 ~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~--------- 77 (127)
...|...||.|+|+||+.+=..++ .++...+.+|..+|..++|-++.+++.+++.+..- +...+.
T Consensus 81 ~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l----~~~~~f~~d~efI~~ 154 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL----HHHIPFNWDSEFIKL 154 (694)
T ss_pred hhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhcccc----ccCCCccCCcchHHH
Confidence 456778899999999998766544 34667888999999999999999999998775311 000000
Q ss_pred ------------------CCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 78 ------------------DESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 78 ------------------~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
-.....+....+|+..|+.++|.||.-+|...+.
T Consensus 155 ~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 155 HFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 0011224467788888888888888888877663
No 88
>KOG0751|consensus
Probab=97.90 E-value=0.00012 Score=52.21 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=70.8
Q ss_pred hhcCCCCCceeHHHHHHHHHHhcCC--cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHH
Q psy15327 8 TFDANGDGTIDFREFLCALSVTSRG--KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKR 85 (127)
Q Consensus 8 ~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (127)
..+.++...++.++|+.....+... .+....+.+=..-|..+||-|+++||+.+-..+ ..++..
T Consensus 44 s~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l--------------C~pDal 109 (694)
T KOG0751|consen 44 SIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL--------------CAPDAL 109 (694)
T ss_pred HHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc--------------cCchHH
Confidence 3456777899999999987766443 344455555566788999999999998765543 345667
Q ss_pred HHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 86 TDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 86 ~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
...+|..+|..++|.+|++++..++.+
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhc
Confidence 788999999999999999999999865
No 89
>KOG2562|consensus
Probab=97.83 E-value=8.7e-05 Score=52.25 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=71.7
Q ss_pred HhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhh----hhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFS----MYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 6 f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
|-.+|.+.+|.|+.+++...-... .....+.+||. ..-.-.+|++++++|+-++-.+ ....
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~------------e~k~ 348 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE------------EDKD 348 (493)
T ss_pred HhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh------------ccCC
Confidence 667899999999999988776543 34667888898 3445678999999999999876 2233
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
+..-++-.|+.+|.+++|.++.+|+.-+..
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 445577889999999999999999887664
No 90
>KOG0040|consensus
Probab=97.74 E-value=6e-05 Score=59.68 Aligned_cols=71 Identities=21% Similarity=0.405 Sum_probs=57.2
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
++..+|+.||.+.+|.++..+|..+++++.-.+++ + ....++..+..++...|++.+|+|+..+|+.+|..
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpm---v--Ee~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPM---V--EEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcc---c--ccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 67789999999999999999999999987322221 1 12234457899999999999999999999999854
No 91
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.66 E-value=0.0011 Score=41.05 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=71.9
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCc------------------------------------------------
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGK------------------------------------------------ 33 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~------------------------------------------------ 33 (127)
+++-..-+|.|+||.|...|--..++.++.+.
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 45666779999999999988766666543321
Q ss_pred -----HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 34 -----LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 34 -----~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
..++++.+|.+++..+.+.+|..|+...++.-... .-+.+.....-++..++... .+.+|.++.++.+.
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~-----~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNA-----NDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcccc-----CCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 25689999999999888999999999888762110 11112223334455555554 56799999999887
Q ss_pred HH
Q psy15327 109 GA 110 (127)
Q Consensus 109 ~l 110 (127)
++
T Consensus 163 vY 164 (174)
T PF05042_consen 163 VY 164 (174)
T ss_pred hc
Confidence 66
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.62 E-value=0.00013 Score=30.79 Aligned_cols=26 Identities=50% Similarity=0.855 Sum_probs=17.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALS 27 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~ 27 (127)
++.+|..+|.+++|.|++.+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 35667777777777777777766664
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.59 E-value=2.5e-05 Score=45.52 Aligned_cols=56 Identities=27% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~ 60 (127)
.-.|..+|.|++|.|+..|+..+...+ ...+.=+...++..|.|+||.|+..|...
T Consensus 57 ~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 57 HWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 457899999999999999999887755 22223367789999999999999999754
No 94
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=97.48 E-value=0.0012 Score=36.82 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=51.8
Q ss_pred HHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCC-CCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcC
Q psy15327 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKM-PEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSD 113 (127)
Q Consensus 35 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~ 113 (127)
.++.+++|+.+ .|++|.++...+..+++.+.+.-...... .-+. .+..++..|.... ....|+.++|..++...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 36889999999 89999999999999999887753221111 1122 5666778888762 45679999999999988
Q ss_pred hhHHHHh
Q psy15327 114 PSIVRLL 120 (127)
Q Consensus 114 ~~~~~~~ 120 (127)
|..+-|+
T Consensus 77 Pq~lVWL 83 (90)
T PF09069_consen 77 PQSLVWL 83 (90)
T ss_dssp -TTTTHH
T ss_pred CCeeeHH
Confidence 8765544
No 95
>KOG4251|consensus
Probab=97.46 E-value=0.00037 Score=45.60 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=69.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcC-----C----cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSR-----G----KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTV 72 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~-----~----~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 72 (127)
+..+...+|++++..++--+|+........ . -.+...+..-..+|.+.+|.++++|+..++.-.
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~------- 310 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ------- 310 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCch-------
Confidence 467888899999999999999987653211 1 123345555567899999999999988775321
Q ss_pred cCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 73 MKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 73 ~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
........+..++..-|.+++.+++.+++.+
T Consensus 311 -----n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 311 -----NFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred -----hhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 2233345567777788889999999999876
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.40 E-value=0.00026 Score=38.83 Aligned_cols=65 Identities=17% Similarity=0.352 Sum_probs=49.4
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcC----CCCcccHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN----QDGRLSLEEFIEGAKS 112 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~----~~g~is~~ef~~~l~~ 112 (127)
++..+|..+-. +.+.|+.++|..+++...+ ....+.+.+..++..+..+ ..+.+|+++|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~----------~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQG----------EPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-----------TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhc----------cccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36778988844 7888999999999987421 2234678888888887654 4689999999999854
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.36 E-value=0.0002 Score=30.21 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=23.9
Q ss_pred HHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 38 LRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 38 ~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
++.+|+.+|.+++|.|++.+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988864
No 98
>KOG1029|consensus
Probab=97.34 E-value=0.0013 Score=49.47 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=51.8
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
+...+|..+|+..+|+++-..=+.++-. ..++...+..|+..-|-|+||.++.+||+-.+
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~q--------------S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQ--------------SGLPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHh--------------cCCchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 5667899999999999999888887765 36677889999999999999999999998765
No 99
>KOG4347|consensus
Probab=97.27 E-value=0.00033 Score=51.30 Aligned_cols=57 Identities=26% Similarity=0.543 Sum_probs=53.2
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHH
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEM 58 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef 58 (127)
|++++|..+|.+.+|.+++.+++..|..+......+++..+|+.+|.+++ ....++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 47899999999999999999999999999888888999999999999999 8888886
No 100
>KOG0038|consensus
Probab=97.15 E-value=0.0011 Score=40.10 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=49.7
Q ss_pred HHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 38 LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 38 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
-+.|...+..|+.|.+++++|+..++.+.. ....+-.+.-+|+.+|.++++.|--+++.+.+..
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE-----------~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSE-----------MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHh-----------hChHHhhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 345566677999999999999999987632 1223344677899999999999999999887754
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.04 E-value=0.0021 Score=35.15 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC--cHHHHHHhhhhhhccC----CCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG--KLEQKLRWAFSMYDLD----GNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~f~~~d~~----~~g~i~~~ef~~~l~~ 64 (127)
|+.+|..+.. +.+.|+.++|..+|..-... .....+..++..+.++ ..+.++.++|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5788999955 78899999999999866443 4678899999988665 4789999999998864
No 102
>KOG0046|consensus
Probab=97.02 E-value=0.0042 Score=44.85 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=53.6
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.+...|..+| +++|+|+..++..++... .... ....+++++.++...+.+.+|.|++++|..++..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~--------~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKA--------KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHh--------cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 4666788898 999999999999999875 1111 2345788999999999999999999999996643
No 103
>KOG0046|consensus
Probab=96.87 E-value=0.0068 Score=43.84 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=54.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC---cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG---KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 66 (127)
+++-|...| +++|+|+..+...++...... ..++.++.+....++|.+|.|++++|..++-.+.
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 356788898 999999999999999876543 4578899999999999999999999999776653
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=96.68 E-value=0.02 Score=42.57 Aligned_cols=89 Identities=10% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCceeHHHHHHHHHHhcC--CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHH
Q psy15327 13 GDGTIDFREFLCALSVTSR--GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIF 90 (127)
Q Consensus 13 ~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (127)
+.|.++|.+|..+.+.+.. ..++.++..+|..+-. +.+.++.++|..+++.... ....+.+.+..++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~----------e~~~~~~~~~~i~ 81 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD----------ELDCTLAEAQRIV 81 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC----------CcCCCHHHHHHHH
Confidence 4589999999888776632 2467789999999954 4468999999999998622 1123444455554
Q ss_pred Hhc----C---cCCCCcccHHHHHHHHhc
Q psy15327 91 RQM----D---KNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 91 ~~~----d---~~~~g~is~~ef~~~l~~ 112 (127)
..+ . ....+.++++.|..+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 82 EEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHhhccccccccccCcCHHHHHHHHcC
Confidence 432 1 112346899999999964
No 105
>KOG4578|consensus
Probab=96.58 E-value=0.0018 Score=44.06 Aligned_cols=70 Identities=29% Similarity=0.474 Sum_probs=57.2
Q ss_pred HHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcCh
Q psy15327 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDP 114 (127)
Q Consensus 35 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~ 114 (127)
+..+.+.|..+|.|.++.|...|.+.+=+.+.+ ........+.+++..|.|+|..||++|++..|...+
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k-----------~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLK-----------KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHh-----------hccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 336778899999999999999997776555432 345678899999999999999999999999887654
Q ss_pred h
Q psy15327 115 S 115 (127)
Q Consensus 115 ~ 115 (127)
+
T Consensus 401 ~ 401 (421)
T KOG4578|consen 401 E 401 (421)
T ss_pred c
Confidence 4
No 106
>KOG3555|consensus
Probab=96.53 E-value=0.0055 Score=42.10 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=54.9
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.....+.++|.++|.+.++.++..|+..+.. ...+..++.+|...|...+|.|+-.|+...+++
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----------------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL----------------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc----------------cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 4567899999999999999999999876654 235677899999999999999999999988864
No 107
>KOG4666|consensus
Probab=96.48 E-value=0.0023 Score=43.55 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=56.5
Q ss_pred HHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
+.++-.|..||.+++|.+++.|....+..+. +...+.+.+.-+|+.++...||.+.-.+|--+++-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc-----------~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLC-----------GPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeee-----------CCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 6788899999999999999999887776542 46778899999999999999999999888777753
No 108
>KOG1955|consensus
Probab=96.01 E-value=0.023 Score=41.09 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=52.9
Q ss_pred HHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 36 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
+....-|+.+-.|..|+|+..--+.++.. ..+.-+++..|++..|.+.||.+|..||+..+.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtK--------------Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTK--------------SKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhh--------------ccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 34555688888999999999988888875 366778999999999999999999999999874
No 109
>KOG4065|consensus
Probab=95.76 E-value=0.036 Score=32.27 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=43.1
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcC-------C---cHHHH----HHhhhhhhccCCCCcccHHHHHHH
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSR-------G---KLEQK----LRWAFSMYDLDGNGYISRNEMLEI 61 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~-------~---~~~~~----~~~~f~~~d~~~~g~i~~~ef~~~ 61 (127)
.|..+|-+++|.++--|+..++...-. + +++.+ +..+.+--|.|++|.|++.||.+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 578889999999999999999986532 1 23334 344556668899999999998764
No 110
>KOG0169|consensus
Probab=95.75 E-value=0.11 Score=39.41 Aligned_cols=97 Identities=20% Similarity=0.388 Sum_probs=74.8
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCc
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST 81 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~ 81 (127)
+.++|...+..+++++..++++.+-....... .+..+|..+-. +.+.++.+++..++..... ....
T Consensus 174 ~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~-~~~~ls~~~L~~Fl~~~q~----------e~~~ 239 (746)
T KOG0169|consen 174 ARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSH-GKEYLSTDDLLRFLEEEQG----------EDGA 239 (746)
T ss_pred HHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhC-CCCccCHHHHHHHHHHhcc----------cccc
Confidence 56788888889999999999999988765544 67778887744 4889999999999987521 3455
Q ss_pred hHHHHHHHHHhcCcC----CCCcccHHHHHHHHhc
Q psy15327 82 PEKRTDKIFRQMDKN----QDGRLSLEEFIEGAKS 112 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~----~~g~is~~ef~~~l~~ 112 (127)
..+.+..+++.+... ..+.++.+.|..+|..
T Consensus 240 ~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 240 TLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred cHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 667788888776433 4567999999998854
No 111
>KOG4347|consensus
Probab=95.71 E-value=0.028 Score=41.70 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred eeHHHHHHHHHHhcC-CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCc
Q psy15327 17 IDFREFLCALSVTSR-GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95 (127)
Q Consensus 17 i~~~ef~~~l~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 95 (127)
+++..|......+.. ..+...++++|+.+|.+++|.|++.+++..+..+.. ....+.+.-+|+.+|+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~------------~~~~ek~~l~y~lh~~ 602 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA------------GDALEKLKLLYKLHDP 602 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh------------hhHHHHHHHHHhhccC
Confidence 344444444443322 245567899999999999999999999999887732 3344667778888988
Q ss_pred CCCCcccHHHH
Q psy15327 96 NQDGRLSLEEF 106 (127)
Q Consensus 96 ~~~g~is~~ef 106 (127)
+.+ ....++.
T Consensus 603 p~~-~~d~e~~ 612 (671)
T KOG4347|consen 603 PAD-ELDREEV 612 (671)
T ss_pred Ccc-ccccccc
Confidence 877 6666665
No 112
>KOG3866|consensus
Probab=95.20 E-value=0.054 Score=36.96 Aligned_cols=72 Identities=24% Similarity=0.458 Sum_probs=48.8
Q ss_pred HhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCC-CCchH---HHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 39 RWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPED-ESTPE---KRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 39 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~-~~~~~---~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
+..|..+|.|++|+++-.|+..+++.-+..+..-...... ....+ ..-+.+++..|+|.+.-||.++|...-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 3568889999999999999998887765443321111000 00111 123568899999999999999998755
No 113
>KOG4578|consensus
Probab=95.10 E-value=0.025 Score=38.77 Aligned_cols=60 Identities=25% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcC-CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSR-GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
-|..+|.|.++.|...|+..+=..+.. .....=.+.+|+..|.|+|..|++.|+...+..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 477899999999999998877665543 355566788999999999999999999888764
No 114
>KOG1029|consensus
Probab=95.07 E-value=0.052 Score=41.35 Aligned_cols=61 Identities=23% Similarity=0.434 Sum_probs=52.4
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+++|..+|....|.++-..=+.+|.. ...+...+..||-+-|.|+||+++.+||.-++-.+
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 57899999999999999998888874 35677789999999999999999999997766544
No 115
>KOG1707|consensus
Probab=95.05 E-value=0.34 Score=35.99 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=69.0
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHh-cCCcHHHHHHhhhhhhcc-----CCCCcccHHHHHHHHHHHHHHhccc---
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVT-SRGKLEQKLRWAFSMYDL-----DGNGYISRNEMLEIVQAIYKMVGTV--- 72 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~f~~~d~-----~~~g~i~~~ef~~~l~~~~~~~~~~--- 72 (127)
+.++|...|.|++|.++=.|...+=... +.+...+.+..+-...+. =.++.++...|..+...... .+.+
T Consensus 197 l~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfie-rgr~Ett 275 (625)
T KOG1707|consen 197 LKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIE-RGRHETT 275 (625)
T ss_pred HHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHH-hccccch
Confidence 5789999999999999999887775443 334433333333332222 12334566666543332211 1111
Q ss_pred ----------c------------------CCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 73 ----------M------------------KMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 73 ----------~------------------~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
. ....-.+...+.+..+|..+|.++||.++.+|+..++...|.
T Consensus 276 W~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 276 WTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred hhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 0 111112223466888999999999999999999999887665
No 116
>KOG1955|consensus
Probab=94.93 E-value=0.092 Score=38.13 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=47.1
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
-|+-+.+|..|.|+-.--+.+...- ..+-.++..||.+.|.++||.+++.||+.++..+
T Consensus 236 QFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 236 QFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4666778888888877666666532 3556789999999999999999999999988754
No 117
>KOG4301|consensus
Probab=94.75 E-value=0.087 Score=36.38 Aligned_cols=103 Identities=21% Similarity=0.346 Sum_probs=72.8
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHh-ccccCCCCCCCchH
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV-GTVMKMPEDESTPE 83 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~~~~~~~~~ 83 (127)
+..++|+.+.|+++..-...++..++.+.-.+++++||... .|.+|.+..-.+.+++..+++.- ....+. ..+-++
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~p--sfg~te 191 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGP--SFGYTE 191 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCC--CcchHH
Confidence 56678999999999999999999998888889999999998 77788888888888888775421 110111 111123
Q ss_pred HHHHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 84 KRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 84 ~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
..++..|. .+.+++.+.|...+...|-
T Consensus 192 ~~a~~cf~-----qqrKv~Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 192 LSARLCFL-----QQRKVELNQFLDTLMSDPP 218 (434)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHhcCCC
Confidence 33444443 3456888999888876554
No 118
>KOG0035|consensus
Probab=94.60 E-value=0.37 Score=37.55 Aligned_cols=95 Identities=20% Similarity=0.148 Sum_probs=67.8
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcH--HHHHHhhhh---hhccCCCCcccHHHHHHHHHHHHHHhccccCCC
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKL--EQKLRWAFS---MYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~--~~~~~~~f~---~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 76 (127)
++.+|.-++....|.+++++|+.++..++.... ++-+..+|+ ..|.+.-|.+++.+|...+..-+.
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e--------- 819 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE--------- 819 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh---------
Confidence 456788888888899999999999999876644 344445554 445556689999999999876432
Q ss_pred CCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 77 ~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
.......+...|+-+-+++. .+..++++.
T Consensus 820 --~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 820 --DLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred --hhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 22344556666777755544 688888876
No 119
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.14 E-value=0.79 Score=28.24 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=50.2
Q ss_pred HHHHHhhhc---CCCCCceeHHHHHHHHHHh---cCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHh
Q psy15327 2 AEHVFRTFD---ANGDGTIDFREFLCALSVT---SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69 (127)
Q Consensus 2 ~~~~f~~~d---~~~~g~i~~~ef~~~l~~~---~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~ 69 (127)
++.+|..|- ..+...|+-..|..+|+.. ........+..+|..+-..+...|++++|..+|..+....
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 466777772 3445689999999999864 3347788999999998666667799999999999875543
No 120
>KOG0039|consensus
Probab=94.05 E-value=0.28 Score=37.15 Aligned_cols=91 Identities=22% Similarity=0.364 Sum_probs=72.4
Q ss_pred CCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhc
Q psy15327 14 DGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93 (127)
Q Consensus 14 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 93 (127)
+| ++++++. ......+++++..|..+|. .+|.++.+++..++........ . ........+....++...
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 70 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-L---SLIKKQTEEYAALIMEEL 70 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-h---hhhhhhhhHHHHHhhhhc
Confidence 56 8888888 4455778899999999998 8999999999999887765443 1 112455667788899999
Q ss_pred CcCCCCcccHHHHHHHHhcChh
Q psy15327 94 DKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 94 d~~~~g~is~~ef~~~l~~~~~ 115 (127)
|.+..|.+..+++.-++...|.
T Consensus 71 ~~~~~~y~~~~~~~~ll~~~~~ 92 (646)
T KOG0039|consen 71 DPDHKGYITNEDLEILLLQIPT 92 (646)
T ss_pred cccccceeeecchhHHHHhchH
Confidence 9999999999999988887664
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.97 E-value=0.39 Score=29.59 Aligned_cols=60 Identities=10% Similarity=0.285 Sum_probs=42.8
Q ss_pred hhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 44 MYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 44 ~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.+.......++-..|..+++.+ ++..+ ..+...+..+|..+...+...|+|++|..+|..
T Consensus 10 ~fG~~~~~~m~~~~F~Kl~kD~--------~i~d~-k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 10 SFGKKNGTEMDSKNFAKLCKDC--------GIIDK-KLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp CSSTSTSSEEEHHHHHHHHHHT--------SS--S-SS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HhcCCccccccHHHHHHHHHHc--------CCCCC-CCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3345555679999999999876 22222 378888999999987667778999999998854
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.93 E-value=0.29 Score=30.65 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=52.7
Q ss_pred HHHHhhhhhhccCCCCcccHHHHHHHHHHHHH-------------------------------------Hhccc----cC
Q psy15327 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK-------------------------------------MVGTV----MK 74 (127)
Q Consensus 36 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~-------------------------------------~~~~~----~~ 74 (127)
..++.-..-+|.|+||.|...|--.-++.+.- ...+| ..
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 35667778899999999998886654443321 00000 01
Q ss_pred CCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcC
Q psy15327 75 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSD 113 (127)
Q Consensus 75 ~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~ 113 (127)
...+-....+..+++|..++..+.+.+|..|+..++..+
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 111223345679999999998888999999999999653
No 123
>KOG4286|consensus
Probab=93.72 E-value=0.55 Score=35.99 Aligned_cols=111 Identities=16% Similarity=0.278 Sum_probs=76.3
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH---HhccccCCCCCCCc
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK---MVGTVMKMPEDEST 81 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~~~~~~~ 81 (127)
++..||+..+|+|..-+|+..+..+++...+++++++|..+-.+++-.+ ...|..++..+.+ ..|..... |...
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAf--GgsN 551 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAF--GGSN 551 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhh--cCCC
Confidence 5778999999999999999999999999999999999999855555433 5555555444332 22222111 1122
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~ 120 (127)
.+--++..|.. -++-..|+...|..++...|-.+-|+
T Consensus 552 vepsvrsCF~~--v~~~pei~~~~f~dw~~~epqsmVwL 588 (966)
T KOG4286|consen 552 IEPSVRSCFQF--VNNKPEIEAALFLDWMRLEPQSMVWL 588 (966)
T ss_pred CChHHHHHHHh--cCCCCcchHHHHHHHhccCcchhhHH
Confidence 23346667773 34556799999999998877754443
No 124
>KOG3555|consensus
Probab=92.75 E-value=0.14 Score=35.49 Aligned_cols=57 Identities=28% Similarity=0.225 Sum_probs=47.9
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
=||..+|.|.++.++..|+..+-. ...+.=++-+|...|...+|.|+-.|..-.+..
T Consensus 254 WMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 254 WMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 489999999999999999877643 345566888999999999999999999887754
No 125
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=92.53 E-value=0.99 Score=25.61 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.8
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhcc---CCCCcccHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDL---DGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~---~~~g~i~~~ef~~~l~~~ 65 (127)
+.=|..+.. +|.+...+|..|+..- .+.+.+..+|..+-. -....|+.+|+..++.++
T Consensus 33 E~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 33 EKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 344555544 8999999999999632 556777777765532 224679999999999876
No 126
>KOG2243|consensus
Probab=92.43 E-value=0.37 Score=39.72 Aligned_cols=59 Identities=19% Similarity=0.454 Sum_probs=48.6
Q ss_pred hhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 41 AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 41 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.|+.+|+|+.|.|+..+|..++.. .+.-+..++.-++.....+.+..++|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-------------~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-------------HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-------------cccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 377899999999999999999875 24456677888888888888889999999987754
No 127
>KOG0042|consensus
Probab=92.10 E-value=0.35 Score=35.86 Aligned_cols=63 Identities=21% Similarity=0.390 Sum_probs=54.0
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
..+.-|..+|.++.|.++.++++.++... +.+.+.+.........+...+|.+...||.++++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~------------~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSE------------NVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 45567899999999999999999999875 3467788889999999988899999999988874
No 128
>KOG1265|consensus
Probab=91.22 E-value=1.5 Score=34.52 Aligned_cols=91 Identities=10% Similarity=0.213 Sum_probs=64.8
Q ss_pred eeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcC
Q psy15327 17 IDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN 96 (127)
Q Consensus 17 i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~ 96 (127)
.+++.|..++..+ .++.+++.||..+..+..-++|.+++..+++.-.+ +.-.....-.......+..++..+..+
T Consensus 205 f~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~Qr--DpRLNeilfp~~~~~r~~~liekyEp~ 279 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQR--DPRLNEILFPPADPRRIQSLIEKYEPN 279 (1189)
T ss_pred ccHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhcc--CcchhhhhcCCCCHHHHHHHHHHcCCc
Confidence 4555566666554 45578999999998888899999999999986432 000001112345667788899998776
Q ss_pred C----CCcccHHHHHHHHhc
Q psy15327 97 Q----DGRLSLEEFIEGAKS 112 (127)
Q Consensus 97 ~----~g~is~~ef~~~l~~ 112 (127)
. .|.++.+-|.+++..
T Consensus 280 ~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 280 SDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhhccccchhhhHHHhhC
Confidence 5 588999999998865
No 129
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.56 E-value=2.4 Score=25.26 Aligned_cols=107 Identities=11% Similarity=0.194 Sum_probs=62.1
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHh--c-----CCcHHHHHHhhhhhhccCC--CCcccHHHHHHHHHHHHHHhcccc
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVT--S-----RGKLEQKLRWAFSMYDLDG--NGYISRNEMLEIVQAIYKMVGTVM 73 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~--~-----~~~~~~~~~~~f~~~d~~~--~g~i~~~ef~~~l~~~~~~~~~~~ 73 (127)
.+++..+.. =+.|-|.-|+.+++.. . ....-..+..+|+....+. +..++..++..++..++.......
T Consensus 3 ~~l~~~l~~--~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~ 80 (127)
T PF09068_consen 3 TELMQELQD--FNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRL 80 (127)
T ss_dssp HHHHHHGGG--GTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH--HhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345555522 2357788888887632 1 1234456677787775553 467999999999999985443322
Q ss_pred CCCCC------CCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 74 KMPED------ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 74 ~~~~~------~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
+.... ....+-.+..++..+|.+.+|.|+.-.|.-.+.
T Consensus 81 p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 81 PTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp TTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 22111 012233467788899999999999988876653
No 130
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=90.40 E-value=0.88 Score=24.14 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=33.7
Q ss_pred ceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 16 TIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 16 ~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
.++|..+..++... .+...+..+...|+.=..+.|+.+||.+.++.+
T Consensus 8 ~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46666666666544 444556666666666678889999999999986
No 131
>KOG2557|consensus
Probab=89.60 E-value=1.8 Score=30.50 Aligned_cols=103 Identities=21% Similarity=0.354 Sum_probs=66.2
Q ss_pred ceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHH---Hh
Q psy15327 16 TIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIF---RQ 92 (127)
Q Consensus 16 ~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f---~~ 92 (127)
.++++.+...........-++.++.++...+.+++|....++..+++....+..-.......... .......+| ..
T Consensus 74 ~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks~~~~ess~~es~-~~~~~d~af~~~~~ 152 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKSVFSTESSDAESS-DYKKMDDAFLNAAT 152 (427)
T ss_pred cchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhheeeecccchhhh-hhhhhhccccchhh
Confidence 68888888888877788888999999999999999999999999999887654332222211111 111111222 12
Q ss_pred cCcCCC---CcccHHHHHHHHhcChhHHHH
Q psy15327 93 MDKNQD---GRLSLEEFIEGAKSDPSIVRL 119 (127)
Q Consensus 93 ~d~~~~---g~is~~ef~~~l~~~~~~~~~ 119 (127)
+.++.. +...++.|..++...|.|...
T Consensus 153 ~~ke~e~t~p~~~le~~~s~~p~f~~i~r~ 182 (427)
T KOG2557|consen 153 FSKEDEGTEPGMSLEDFRSWCPFFPTIRKF 182 (427)
T ss_pred hccccccCCCchhHHHHhhhchHHHHHHHH
Confidence 222333 345677777766666665443
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=89.60 E-value=1.6 Score=32.65 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=49.7
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcC----CCCcccHHHHHH
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN----QDGRLSLEEFIE 108 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~----~~g~is~~ef~~ 108 (127)
.+..++..+|..+-.+ +.++.++|..+++.... ......+.+..++..+... ..|.++.+.|..
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~ 88 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQG----------ERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYR 88 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcC----------CccCCHHHHHHHHHHhccchhhcccCccCHHHHHH
Confidence 3567899999988543 57999999999987522 1223456678888877543 246799999999
Q ss_pred HHhc
Q psy15327 109 GAKS 112 (127)
Q Consensus 109 ~l~~ 112 (127)
+|..
T Consensus 89 yl~s 92 (567)
T PLN02228 89 YLFS 92 (567)
T ss_pred HhcC
Confidence 9864
No 133
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=89.53 E-value=0.92 Score=27.47 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=40.0
Q ss_pred CceeHHHHHHHHHHhcCCcHHHHHHhhhhhhcc-------CCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHH
Q psy15327 15 GTIDFREFLCALSVTSRGKLEQKLRWAFSMYDL-------DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTD 87 (127)
Q Consensus 15 g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~-------~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (127)
+.++..||.+.-.-... +..+++.+...|.. +..+.|+++.|+.+|..++. ..++++...
T Consensus 6 ~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe-----------~d~P~~lc~ 72 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE-----------VDLPEDLCQ 72 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT------------S--HHHHH
T ss_pred eccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc-----------CCCCHHHHH
Confidence 67899999988765433 22345555544422 23457999999999998852 357888888
Q ss_pred HHHHhcCcC
Q psy15327 88 KIFRQMDKN 96 (127)
Q Consensus 88 ~~f~~~d~~ 96 (127)
++|..+-..
T Consensus 73 hLF~sF~~~ 81 (138)
T PF14513_consen 73 HLFLSFQKK 81 (138)
T ss_dssp HHHHHS---
T ss_pred HHHHHHhCc
Confidence 999988644
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=89.51 E-value=1.5 Score=33.06 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=39.8
Q ss_pred CCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 49 GNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 49 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
+.|.+++++|..+.+.+- ........++..+|..+.. +.+.++.++|.++|..
T Consensus 13 ~~g~l~f~~f~~f~~~~k----------~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFK----------ITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhc----------cccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHH
Confidence 458999999988887651 0122356789999999964 4468999999999954
No 135
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.33 E-value=1 Score=23.85 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
+.+.+..+|+.+ .++.+.||-+|+.+.+.....
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~a 36 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQA 36 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCCH
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCcHHH
Confidence 457889999999 678899999999998865444
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=88.69 E-value=1.9 Score=32.39 Aligned_cols=67 Identities=13% Similarity=0.278 Sum_probs=48.6
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCc-CCCCcccHHHHHHHHhc
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK-NQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~-~~~g~is~~ef~~~l~~ 112 (127)
+...+..+|..+-. ++.++.++|..+++.... ......+.+..++..+.. ...+.++.+.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~----------~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQK----------QDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcC----------CccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44589999999854 468999999999987632 123455667777776532 23567999999999965
No 137
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=88.61 E-value=2.4 Score=24.11 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=40.7
Q ss_pred HHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCc---CCCCcccHHHHHHHHhc
Q psy15327 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK---NQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 36 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~---~~~g~is~~ef~~~l~~ 112 (127)
..++.-|..+-. +|.+..+.|...+ |...+.+.+.++|..+.. -....|+.+|+..+..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---------------GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---------------GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---------------T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---------------CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 356677777766 8999999999888 345567888888876642 12467999999988754
No 138
>KOG0035|consensus
Probab=88.55 E-value=1.5 Score=34.39 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=53.4
Q ss_pred HHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCC-CCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcC
Q psy15327 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPED-ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSD 113 (127)
Q Consensus 35 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~ 113 (127)
..+++.+|..++....|.++.++++..+..+.. ..+ .......+..+....|....|.+++.+|...|.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~--------~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGY--------NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc--------ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 357889999999999999999999998887611 111 12223456666677777778999999999998763
Q ss_pred h
Q psy15327 114 P 114 (127)
Q Consensus 114 ~ 114 (127)
.
T Consensus 818 ~ 818 (890)
T KOG0035|consen 818 Y 818 (890)
T ss_pred h
Confidence 3
No 139
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.90 E-value=3.1 Score=22.96 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=53.3
Q ss_pred ceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhc
Q psy15327 16 TIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93 (127)
Q Consensus 16 ~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 93 (127)
.||..|++......+.+...+.++.+...+-.++=...+-++-..++..+...++ +.....+..+|..+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~---------p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITS---------PQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHH
Confidence 5899999999999999999999999999997777778888888888887754333 23344556666554
No 140
>KOG2243|consensus
Probab=86.43 E-value=1.8 Score=36.11 Aligned_cols=58 Identities=17% Similarity=0.399 Sum_probs=47.4
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l 62 (127)
..|..+|+++.|.|+..+|-.++..- +.....++..+......|.+..+++++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 35788999999999999999999753 34556778888888888888889999988754
No 141
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.87 E-value=4.4 Score=24.16 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=40.0
Q ss_pred HHHHhhhcCCC--CCceeHHHHHHHHHHhcC-------C---c--------HHHHHHhhhhhhccCCCCcccHHHHHHHH
Q psy15327 3 EHVFRTFDANG--DGTIDFREFLCALSVTSR-------G---K--------LEQKLRWAFSMYDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 3 ~~~f~~~d~~~--~g~i~~~ef~~~l~~~~~-------~---~--------~~~~~~~~f~~~d~~~~g~i~~~ef~~~l 62 (127)
.+.|+.+..+. +..++..+...++..+.. . . .+--+.+++..||++++|.|+.-.|+..+
T Consensus 44 ~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 44 IEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 34555554333 467999999999987651 1 1 12246678899999999999999988777
Q ss_pred HH
Q psy15327 63 QA 64 (127)
Q Consensus 63 ~~ 64 (127)
..
T Consensus 124 ~~ 125 (127)
T PF09068_consen 124 IT 125 (127)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 142
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=85.16 E-value=2.7 Score=29.27 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=56.4
Q ss_pred HhcCCcHHHHHHhhhhhh--ccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHH
Q psy15327 28 VTSRGKLEQKLRWAFSMY--DLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105 (127)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~e 105 (127)
.+.....+++++.+...+ |.|....+--+||.+.+..+ ........++-+-+.+..+=+|++=|.|
T Consensus 37 ~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l------------~~e~r~~FidFLerSctaEFSGflLYKE 104 (355)
T PRK13654 37 KLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHL------------DPETRKEFIDFLERSCTAEFSGFLLYKE 104 (355)
T ss_pred hcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhC------------CHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 344456677788888766 56666778888887766554 2223333444444555566689999999
Q ss_pred HHHHHh-cChhHHHHhhc
Q psy15327 106 FIEGAK-SDPSIVRLLQC 122 (127)
Q Consensus 106 f~~~l~-~~~~~~~~~~~ 122 (127)
+.+-++ .+|.+.++|+.
T Consensus 105 l~rrlk~~nP~lae~F~l 122 (355)
T PRK13654 105 LSRRLKDRNPLLAELFQL 122 (355)
T ss_pred HHHhccccCcHHHHHHHH
Confidence 999886 68998888764
No 143
>KOG0042|consensus
Probab=84.87 E-value=1.8 Score=32.42 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=56.3
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+..|..+|.+..|.++..+.+..+.......+++.+..+.+..|.+-.|.+...||.+++..+
T Consensus 596 ~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 596 KTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 356788999999999999999999988878888899999999999999999999999988876
No 144
>PLN02230 phosphoinositide phospholipase C 4
Probab=83.26 E-value=5.4 Score=30.24 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=47.3
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcC-------cCCCCcccHHH
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD-------KNQDGRLSLEE 105 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d-------~~~~g~is~~e 105 (127)
.+...+..+|..+-.++ +.++.++|..+++.... .......+.+..++..+- .-..+.++.+.
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGG---------GEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDD 95 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC---------CcccCCHHHHHHHHHHHHhhccccccccccccCHHH
Confidence 35578999999995444 79999999999997521 011234455666665431 12345699999
Q ss_pred HHHHHhc
Q psy15327 106 FIEGAKS 112 (127)
Q Consensus 106 f~~~l~~ 112 (127)
|..+|..
T Consensus 96 F~~yL~s 102 (598)
T PLN02230 96 FNYYLFS 102 (598)
T ss_pred HHHHHcC
Confidence 9998865
No 145
>KOG3866|consensus
Probab=82.80 E-value=1.8 Score=29.88 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHh----cCCcH---------HH---HHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVT----SRGKL---------EQ---KLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~----~~~~~---------~~---~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
-+|..+|.|++|.++-.++..+...- ..+.+ ++ .-+-+++.+|.|.+..|+.+||......
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 46788999999999999988876532 22111 11 1234577899999999999999876543
No 146
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=82.26 E-value=6.5 Score=21.73 Aligned_cols=52 Identities=23% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 14 DGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 14 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
.-.|.+.+|..+|.....-........+=..+|-.++++|+.=||--+.+..
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3579999999999987654444556666678899999999999998777754
No 147
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.67 E-value=2.6 Score=16.74 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=7.3
Q ss_pred cCCCCCceeHHHHHH
Q psy15327 10 DANGDGTIDFREFLC 24 (127)
Q Consensus 10 d~~~~g~i~~~ef~~ 24 (127)
|.+++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 345555555555543
No 148
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=80.63 E-value=11 Score=23.22 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=8.1
Q ss_pred HHHHHHHHhcChhH
Q psy15327 103 LEEFIEGAKSDPSI 116 (127)
Q Consensus 103 ~~ef~~~l~~~~~~ 116 (127)
-+++..++.+-|..
T Consensus 151 tE~Ye~vwkKmPaY 164 (175)
T PF04876_consen 151 TEHYEKVWKKMPAY 164 (175)
T ss_pred hHHHHHHHHHhhHH
Confidence 35566666666654
No 149
>KOG0998|consensus
Probab=79.59 E-value=0.51 Score=36.94 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.5
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
.+|...|.+++|.|+..+.+..+.. .+.....+..+|...|..+.|.+++.+|.-.+-.+..
T Consensus 287 ~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 287 KIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred HHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 4789999999999999999998875 5677889999999999999999999988777665543
No 150
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=79.55 E-value=6.3 Score=27.48 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=55.7
Q ss_pred HhcCCcHHHHHHhhhhhh--ccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHH
Q psy15327 28 VTSRGKLEQKLRWAFSMY--DLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105 (127)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~e 105 (127)
.+.....+++++.+...+ |.|....+--+||.+.+..+ ........++-+-+.+..+=+|.+=|.|
T Consensus 33 ~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l------------~~e~r~~FidFLerScTaEFSGflLYKE 100 (351)
T CHL00185 33 NYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL------------DEKTKSLFVEFLERSCTAEFSGFLLYKE 100 (351)
T ss_pred hcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhC------------CHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 344556677788888766 56666778888887766654 2222333444444555566689999999
Q ss_pred HHHHHh-cChhHHHHhhc
Q psy15327 106 FIEGAK-SDPSIVRLLQC 122 (127)
Q Consensus 106 f~~~l~-~~~~~~~~~~~ 122 (127)
+.+-++ .+|.+.++|+.
T Consensus 101 l~rrlk~~nP~lae~F~l 118 (351)
T CHL00185 101 LSRKLKDKNPLLAEGFLL 118 (351)
T ss_pred HHHHhccCCcHHHHHHHH
Confidence 998885 47888887764
No 151
>KOG0506|consensus
Probab=77.54 E-value=7.9 Score=28.56 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=58.3
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhh---hhcc-----CCCCcccHHHHHHHHHHHHHHhccccCC
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFS---MYDL-----DGNGYISRNEMLEIVQAIYKMVGTVMKM 75 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~---~~d~-----~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 75 (127)
-+|..+.....+++++.-|..+|+..+...++.++...+. .+|. ..-+.++.+.|++.+...........+.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrk 169 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRK 169 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhc
Confidence 3677776566799999999999999887666555555553 3342 2335799999998654332211111111
Q ss_pred CCCCC---chHHHHHHHHHhcCcCCCCcc
Q psy15327 76 PEDES---TPEKRTDKIFRQMDKNQDGRL 101 (127)
Q Consensus 76 ~~~~~---~~~~~~~~~f~~~d~~~~g~i 101 (127)
..-.+ .....+..+|+.......|.|
T Consensus 170 qmVIPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 170 QMVIPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred CccCCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 11112 223446777777766566654
No 152
>KOG1707|consensus
Probab=76.96 E-value=2.5 Score=31.73 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=42.2
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhh-hhccCCCCcccHHHHHHHHHHH
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFS-MYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~-~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
|+..+|..+|.++||-++..|+..+.......... ...+. .--.+..|.++++-|..-+..+
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~---~~~~~~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWT---SSPYKDSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCC---CCcccccceecccceeehhhHHHHHHHH
Confidence 57889999999999999999999998876443200 00000 0012367888888888876543
No 153
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=76.93 E-value=10 Score=20.94 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=38.6
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
++...|+.. -+.+..|.+.+|.+.+...+. .....++..+=..+|...+++||.-||--+..
T Consensus 8 eA~~FW~~~-Fg~r~IVPW~~F~~~L~~~h~------------~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 8 EAAEFWKTS-FGKRTIVPWSEFRQALQKVHP------------ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp HHHHHHHHH-HTT-SEEEHHHHHHHHHHHS--------------SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCeEeeHHHHHHHHHHhcC------------CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 445555544 334567999999999998732 11223344444568999999999888755443
No 154
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=76.86 E-value=9.8 Score=26.27 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=54.1
Q ss_pred HhcCCcHHHHHHhhhhhh--ccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHH
Q psy15327 28 VTSRGKLEQKLRWAFSMY--DLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105 (127)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~e 105 (127)
.+.....+++++.+...+ |.|+...+--++|......+ ........++-+-+.+..+=+|.+=|.|
T Consensus 17 ~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~------------~~e~r~~FidFLerSctaEFSGflLYKE 84 (323)
T cd01047 17 ALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKI------------DPELRQIFLEFLERSCTSEFSGFLLYKE 84 (323)
T ss_pred hcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhC------------CHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 344455666777777655 56666777778887766543 1223334444444555566689999999
Q ss_pred HHHHHh-cChhHHHHhhc
Q psy15327 106 FIEGAK-SDPSIVRLLQC 122 (127)
Q Consensus 106 f~~~l~-~~~~~~~~~~~ 122 (127)
+.+-++ .+|.+.++|+.
T Consensus 85 l~rrlk~~nP~lae~F~l 102 (323)
T cd01047 85 LGRRLKNTNPVVAELFRL 102 (323)
T ss_pred HHHHcccCCcHHHHHHHH
Confidence 988885 47888887764
No 155
>PLN02228 Phosphoinositide phospholipase C
Probab=75.84 E-value=14 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=44.9
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC--cHHHHHHhhhhhhccC----CCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG--KLEQKLRWAFSMYDLD----GNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~f~~~d~~----~~g~i~~~ef~~~l~~ 64 (127)
+.++|..+-. ++.++..+|..+|...... ...+.++.++..+... ..|.++.+.|..++.+
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4677877753 3589999999999876543 4456788888887543 3467999999988864
No 156
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.57 E-value=5.8 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCc-------CCCCcccHHHHHHHHhc
Q psy15327 51 GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK-------NQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 51 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~-------~~~g~is~~ef~~~l~~ 112 (127)
+.|+.+||.++-..+- -+...+..+++.+.. +..+.|+|+.|..+|..
T Consensus 6 ~~lsp~eF~qLq~y~e--------------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--------------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp S-S-HHHHHHHHHHHH--------------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 5688888887655431 122345555555532 23457999999998854
No 157
>KOG1954|consensus
Probab=74.09 E-value=7 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~ 60 (127)
++|..+.+- +|+|+-..-...+. ....+...+-++|+.-|.|++|.++-+||.-
T Consensus 448 e~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 448 EIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 455555443 57777666655554 3346778999999999999999999999854
No 158
>PLN02223 phosphoinositide phospholipase C
Probab=73.16 E-value=14 Score=27.66 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=45.8
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCc--------CCCCcccHHH
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK--------NQDGRLSLEE 105 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~--------~~~g~is~~e 105 (127)
+.+.++.+|..+ .++.|.++.+.+..++.-+... ......+.+.+..++..+-. ...+.++.+.
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~-------q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~ 85 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTE-------KDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDH 85 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHh-------cccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHH
Confidence 456889999998 5777889999998888433211 11223444555555554422 1236699999
Q ss_pred HHHHHhc
Q psy15327 106 FIEGAKS 112 (127)
Q Consensus 106 f~~~l~~ 112 (127)
|..+|..
T Consensus 86 f~~~L~s 92 (537)
T PLN02223 86 LNEFLFS 92 (537)
T ss_pred HHHHhcC
Confidence 9999855
No 159
>KOG4286|consensus
Probab=72.26 E-value=25 Score=27.64 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHHHhhhcCCC-CCceeHHHHHHHHHHhcCC-------------cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANG-DGTIDFREFLCALSVTSRG-------------KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68 (127)
Q Consensus 3 ~~~f~~~d~~~-~g~i~~~ef~~~l~~~~~~-------------~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~ 68 (127)
..+|..++..+ +..++..+.+.+|...... .-+--+.+++..||+..+|.|..-+|+-.+-.+.
T Consensus 423 l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lc-- 500 (966)
T KOG4286|consen 423 LDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLC-- 500 (966)
T ss_pred HHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHh--
Confidence 45666666433 4567777777777643211 1123467889999999999999999988777662
Q ss_pred hccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
....++....+|+....++..++ ...|..++
T Consensus 501 ----------k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL 531 (966)
T KOG4286|consen 501 ----------KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLL 531 (966)
T ss_pred ----------cchhHHHHHHHHHHHcCchhhHH-HHHHHHHH
Confidence 33455667789998865554443 44444444
No 160
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=71.80 E-value=14 Score=20.82 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=34.6
Q ss_pred CcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHH---HHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 51 GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTD---KIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 51 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
...+.+++..++..+ + ....+.++ ..|+..+......++.+|+.+++..+|.++
T Consensus 34 ~~~~~~~l~~~~~~~------------~-~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Li 90 (105)
T cd02977 34 EPPTKEELKELLAKL------------G-LGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLI 90 (105)
T ss_pred CCCCHHHHHHHHHhc------------C-CCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCee
Confidence 347778888777654 1 11223332 356665544346789999999999999864
No 161
>KOG2419|consensus
Probab=71.19 E-value=4 Score=31.18 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHH---------HHhhhhhhccCCC----------------------
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK---------LRWAFSMYDLDGN---------------------- 50 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~---------~~~~f~~~d~~~~---------------------- 50 (127)
.++++..+|-+.++++++.+|.+....+........ ...+|..+|.+++
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 457788899999999999999988776544322222 4567788888888
Q ss_pred -CcccHHHHHHHHHH
Q psy15327 51 -GYISRNEMLEIVQA 64 (127)
Q Consensus 51 -g~i~~~ef~~~l~~ 64 (127)
|.++.+|.+.+++.
T Consensus 519 ~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 519 FGVVTVDELVALLAL 533 (975)
T ss_pred cCeeEHHHHHHHHHH
Confidence 99999999888773
No 162
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=71.19 E-value=12 Score=26.01 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=52.6
Q ss_pred HhcCCcHHHHHHhhhhhh--ccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHH
Q psy15327 28 VTSRGKLEQKLRWAFSMY--DLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105 (127)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~e 105 (127)
.+.....+++++.+...+ |.|....+--+||.+.+..+ ........++-+-+.+..+=+|++=|.|
T Consensus 27 ~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l------------~~e~r~~FidFLerScTaEFSGflLYKE 94 (337)
T TIGR02029 27 NLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI------------DGELRQAFIEFLERSCTSEFSGFLLYKE 94 (337)
T ss_pred hcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhC------------CHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 344556667777777766 55666777777777766543 1222333344444455556689999999
Q ss_pred HHHHHh-cChhHHHHhhc
Q psy15327 106 FIEGAK-SDPSIVRLLQC 122 (127)
Q Consensus 106 f~~~l~-~~~~~~~~~~~ 122 (127)
+.+-++ .+|.+.++|+.
T Consensus 95 l~rrlk~~~P~lae~F~~ 112 (337)
T TIGR02029 95 LSRRLKNRDPVVAELFQL 112 (337)
T ss_pred HHHhcCCCChHHHHHHHH
Confidence 888774 57777777653
No 163
>KOG0998|consensus
Probab=70.83 E-value=3.3 Score=32.68 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=55.0
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
...|+.+|+.++|.|+-.+-+.++. ......+.+-.+|...|..+.|+++..+|...++....
T Consensus 14 ~~~~~~~d~~~~G~i~g~~a~~f~~--~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~ 76 (847)
T KOG0998|consen 14 DQYFKSADPQGDGRITGAEAVAFLS--KSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQ 76 (847)
T ss_pred HHhhhccCcccCCcccHHHhhhhhh--ccccchhhhhccccccccccCCccccccccccchHhhh
Confidence 5688999999999999999888887 44677888999999999999999999999998886654
No 164
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=70.01 E-value=8.7 Score=16.95 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=11.0
Q ss_pred CCcccHHHHHHHHHHHHHH
Q psy15327 50 NGYISRNEMLEIVQAIYKM 68 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~ 68 (127)
.|.|+.++++.....+...
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 4556666666666655443
No 165
>KOG1264|consensus
Probab=70.01 E-value=12 Score=29.80 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=59.9
Q ss_pred CHHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHH-HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCC
Q psy15327 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQ-KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDE 79 (127)
Q Consensus 1 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~-~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~ 79 (127)
|+++.+..+|..-...|+..++...+.......+.. .+..-|-- |.-+++-+++++|..+...++-. .+.
T Consensus 145 wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs--------~~~ 215 (1267)
T KOG1264|consen 145 WLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFS--------QQK 215 (1267)
T ss_pred HHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhc--------cch
Confidence 567777888877777899999999998766543322 22222322 34456779999999888876420 011
Q ss_pred CchHHHHHH-HHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 80 STPEKRTDK-IFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 80 ~~~~~~~~~-~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
....+.... +...-+......|++.+|.++|..
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~ 249 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIH 249 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHh
Confidence 111111111 111112222356899999998843
No 166
>KOG1785|consensus
Probab=69.42 E-value=41 Score=24.46 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHH
Q psy15327 12 NGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFR 91 (127)
Q Consensus 12 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 91 (127)
.....|.|..|.++|.....-.+.-++..+=..+|..++++|+.=||--+.+.+ + .. ..+-+=+.
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF-q-------------Pw-~tllkNWq 250 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF-Q-------------PW-KTLLKNWQ 250 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh-c-------------cH-HHHHHhhh
Confidence 334578899999999876555555556666677889999999998887665543 1 11 11222233
Q ss_pred hcCcCCCCc---ccHHHHHHHHhc
Q psy15327 92 QMDKNQDGR---LSLEEFIEGAKS 112 (127)
Q Consensus 92 ~~d~~~~g~---is~~ef~~~l~~ 112 (127)
.+.....|+ +||+|...-+++
T Consensus 251 ~LavtHPGYmAFLTYDEVk~RLqk 274 (563)
T KOG1785|consen 251 TLAVTHPGYMAFLTYDEVKARLQK 274 (563)
T ss_pred hhhccCCceeEEeeHHHHHHHHHH
Confidence 444455564 688888776654
No 167
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=69.34 E-value=20 Score=25.18 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCcHHHHHHhhhhhh--ccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 31 RGKLEQKLRWAFSMY--DLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 31 ~~~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
....+++++.+...+ |.|+...+--+||.+.+..+ ........++-+-+.+..+=+|++=|.|+.+
T Consensus 36 ~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l------------~~~~r~~FidFLerSctaEFSGflLYKEl~r 103 (357)
T PLN02508 36 KNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI------------QGPLRQIFIEFLERSCTAEFSGFLLYKELGR 103 (357)
T ss_pred CchhHHHHHHHHHHHHhCccccccccChhhccchhhC------------CHHHHHHHHHHHHhhhhhhcccchHHHHHHH
Confidence 345566777777655 55666777777877766543 1222333444444556666789999999998
Q ss_pred HHh-cChhHHHHhhcC
Q psy15327 109 GAK-SDPSIVRLLQCD 123 (127)
Q Consensus 109 ~l~-~~~~~~~~~~~~ 123 (127)
-++ .+|.+.++|...
T Consensus 104 rlk~~nP~lae~F~lM 119 (357)
T PLN02508 104 RLKKTNPVVAEIFTLM 119 (357)
T ss_pred hcccCChHHHHHHHHh
Confidence 774 489888887653
No 168
>PLN02222 phosphoinositide phospholipase C 2
Probab=68.73 E-value=21 Score=27.11 Aligned_cols=61 Identities=5% Similarity=0.090 Sum_probs=44.6
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC--cHHHHHHhhhhhhcc-CCCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG--KLEQKLRWAFSMYDL-DGNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~~~f~~~d~-~~~g~i~~~ef~~~l~~ 64 (127)
+..+|..+.. ++.++..+|..+|...... ...+.++.++..+.. -..+.++++.|..++.+
T Consensus 27 i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 27 IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4678888753 4699999999999876543 345677777777632 24567999999988864
No 169
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=68.08 E-value=26 Score=22.65 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 26 LSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 26 l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
+.....+.+.+....+...|.+|+.|.|+...+..+.+.
T Consensus 109 l~~w~~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl 147 (195)
T PF11363_consen 109 LNEWAKGADPELRALVNRAFQVDKEGNLNTSRILGLRRL 147 (195)
T ss_pred HHHHhcCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhc
Confidence 333334445555666677888999999999998877653
No 170
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.15 E-value=11 Score=17.86 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHHHHhcC-cC-CCCcccHHHHHHHHh-cChhHH
Q psy15327 85 RTDKIFRQMD-KN-QDGRLSLEEFIEGAK-SDPSIV 117 (127)
Q Consensus 85 ~~~~~f~~~d-~~-~~g~is~~ef~~~l~-~~~~~~ 117 (127)
.+-.+|..+. .+ ....++..||..++. +.|.++
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~fl 42 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEKELPNFL 42 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHHHHHHHh
Confidence 3556677664 22 356799999999995 466554
No 171
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=66.83 E-value=8.5 Score=22.60 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=22.9
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
++++.++.++.++-.|..|.|.|.||..-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 46788999999999999999999999887753
No 172
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=66.15 E-value=5.9 Score=22.65 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHH---HHHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKR---TDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
.++.+|+..++... + ..+. -...|+.+..+....+|-+++..+|..+|.++
T Consensus 35 p~s~~eL~~~l~~~------------g---~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Li 88 (105)
T cd03035 35 GLDAATLERWLAKV------------G---WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLI 88 (105)
T ss_pred CCCHHHHHHHHHHh------------C---hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCee
Confidence 37888888887754 1 1111 12345555444224578899999999888754
No 173
>KOG1265|consensus
Probab=63.42 E-value=81 Score=25.71 Aligned_cols=84 Identities=18% Similarity=0.340 Sum_probs=49.9
Q ss_pred CCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhh--ccCCCCcc-----cHHHHHHHHHHHHHHhccccCCCCCCCchH
Q psy15327 11 ANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMY--DLDGNGYI-----SRNEMLEIVQAIYKMVGTVMKMPEDESTPE 83 (127)
Q Consensus 11 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~--d~~~~g~i-----~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (127)
.+.+|+|-...+...... ...+..++.+...+ ..++...| +++.|..++..+ -..
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---------------cpR 220 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---------------CPR 220 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---------------CCc
Confidence 455566665554444432 22223444444322 23333344 445555555544 133
Q ss_pred HHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 84 KRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 84 ~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
..++.+|..+..+...++|.+++..++.+
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhh
Confidence 56899999999888899999999999954
No 174
>PLN02230 phosphoinositide phospholipase C 4
Probab=61.87 E-value=43 Score=25.68 Aligned_cols=62 Identities=3% Similarity=0.014 Sum_probs=42.4
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCC---cHHHHHHhhhhhhc-------cCCCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRG---KLEQKLRWAFSMYD-------LDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~---~~~~~~~~~f~~~d-------~~~~g~i~~~ef~~~l~~ 64 (127)
+..+|..+..++ +.++.++|..+|..-... ...+.++.++..+- .-..+.++.+.|..++.+
T Consensus 31 i~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 31 VRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 567888885443 799999999999876532 24455666664331 123456999999988754
No 175
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=61.11 E-value=12 Score=21.95 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=22.6
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHH
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~ 63 (127)
..++.++.+|..+-.|..|.|.+.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 4567899999999999999999999987665
No 176
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=57.95 E-value=36 Score=19.94 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=5.8
Q ss_pred cccHHHHHHHH
Q psy15327 100 RLSLEEFIEGA 110 (127)
Q Consensus 100 ~is~~ef~~~l 110 (127)
.+-++||+..+
T Consensus 106 P~liDeFVe~~ 116 (117)
T PF03556_consen 106 PSLIDEFVEWL 116 (117)
T ss_dssp -HHHHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 45666666544
No 177
>KOG2871|consensus
Probab=56.73 E-value=12 Score=26.74 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhh-hhhhccCCCCcccHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWA-FSMYDLDGNGYISRNEML 59 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~-f~~~d~~~~g~i~~~ef~ 59 (127)
++|.|...|+.++|.|+-+-+...+.......++...-.+ =..+|+..-|.|-.++|.
T Consensus 311 ~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 311 LRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred HHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 5788888888888888888888887776644333333333 334566666666655543
No 178
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=56.34 E-value=38 Score=19.63 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=8.4
Q ss_pred hccCCCCcccHHHHHHHH
Q psy15327 45 YDLDGNGYISRNEMLEIV 62 (127)
Q Consensus 45 ~d~~~~g~i~~~ef~~~l 62 (127)
+|...+.+|+.+++.+.+
T Consensus 12 YDT~tS~YITLedi~~lV 29 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLV 29 (107)
T ss_pred cCCCccceeeHHHHHHHH
Confidence 344444445544444444
No 179
>KOG4403|consensus
Probab=54.98 E-value=36 Score=24.96 Aligned_cols=56 Identities=23% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCCCceeHHHHHHHHHHhcC----CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 12 NGDGTIDFREFLCALSVTSR----GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 12 ~~~g~i~~~ef~~~l~~~~~----~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
.|+...+..||+.+..-.+. ...-+.++.|-+.+|.|.+|.|+.+|=-.+++.-++
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk 99 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMK 99 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhh
Confidence 44455666677555443322 123457888899999999999999999999987554
No 180
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=54.66 E-value=36 Score=18.95 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
||.++..|...+-..+...++ .+.+....++..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~----------l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFG----------LDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhC----------cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 666777775554443322111 23344444444443333444566666666543
No 181
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=54.09 E-value=13 Score=19.29 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=18.8
Q ss_pred hhhccCCCCcccHHHHHHHHHH
Q psy15327 43 SMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 43 ~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
+.+|...+.+|+.+++.+.++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4678999999999999988864
No 182
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=52.76 E-value=41 Score=18.92 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHhc------ChhHHHHhh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS------DPSIVRLLQ 121 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~------~~~~~~~~~ 121 (127)
..+.++.+...+- +|.|+.+||..-++. .|+++..+.
T Consensus 24 ~~~~Vr~LV~~L~---~~~i~~EeF~~~Lq~~lns~~qP~lvPFLK 66 (92)
T smart00549 24 VAERVRTLVLGLV---NGTITAEEFTSRLQEALNSPLQPYLIPFLK 66 (92)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHcCCCCchhHHHHH
Confidence 3455555555442 588999999988865 555555554
No 183
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=52.51 E-value=11 Score=21.63 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
.++.+++..++..+.... ...-..-...|+..+......++-+++..++..+|.++
T Consensus 32 p~s~~el~~~l~~~~~~~----------~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Li 87 (110)
T PF03960_consen 32 PLSREELRELLSKLGNGP----------DDLINTRSKTYKELGKLKKDDLSDEELIELLLENPKLI 87 (110)
T ss_dssp ---HHHHHHHHHHHTSSG----------GGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB
T ss_pred CCCHHHHHHHHHHhcccH----------HHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhhe
Confidence 388888888888762000 00001112345555522345689999999999999764
No 184
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=51.55 E-value=41 Score=18.63 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~ 112 (127)
.||..|+.+..... +.+++.+.+..+...+..+.-....-++=.+++.+
T Consensus 14 ~iT~~eLlkyskqy------------~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 14 NITAKELLKYSKQY------------NISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred cCCHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 48899999988887 67888999999999887666666666666666644
No 185
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=51.18 E-value=18 Score=16.82 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.3
Q ss_pred HHHhcChhHHHHhhcCCC
Q psy15327 108 EGAKSDPSIVRLLQCDPQ 125 (127)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~ 125 (127)
.+|.+.|+|-.+++..|.
T Consensus 21 ~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 21 EILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHhChHHHHHhCCCCC
Confidence 467888999999888774
No 186
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=50.71 E-value=28 Score=17.89 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=16.5
Q ss_pred ceeHHHHHHHHHHhcCCcHHHHHH
Q psy15327 16 TIDFREFLCALSVTSRGKLEQKLR 39 (127)
Q Consensus 16 ~i~~~ef~~~l~~~~~~~~~~~~~ 39 (127)
.|+.++|..+|.......+.+.++
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~ 52 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLK 52 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHH
Confidence 478899999998776655555444
No 187
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=50.50 E-value=32 Score=19.87 Aligned_cols=53 Identities=11% Similarity=0.307 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHH---HHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT---DKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
.++.+++..++..+ +.....+.+ ...|+..+.+. ..++-+++..+|..+|.++
T Consensus 35 p~t~~el~~~l~~~------------g~~~~~~lin~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~Li 90 (114)
T TIGR00014 35 PPTKSELEAIFAKL------------GLTVAREMIRTKEALYKELGLSD-PNLSDQELLDAMVAHPILL 90 (114)
T ss_pred CcCHHHHHHHHHHc------------CCchHHHHHhcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCcc
Confidence 48888888888764 211101222 23455554332 3578899999999988764
No 188
>KOG4004|consensus
Probab=49.28 E-value=18 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 82 PEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.+..+..+|...|.+++|.|+++||...+.
T Consensus 220 me~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 220 MEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred HHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 455678899999999999999999988773
No 189
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.06 E-value=20 Score=21.45 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHH---HHHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKR---TDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
.++.+++..++..+. .+ .++. -...|+..+.+. ..++.++...++..+|.++
T Consensus 36 ~~s~~eL~~~l~~~~------------~~-~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~Li 90 (132)
T PRK13344 36 PLTKEEILAILTKTE------------NG-IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRIL 90 (132)
T ss_pred CCCHHHHHHHHHHhC------------CC-HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCccce
Confidence 388888888887641 00 1111 223455554332 4578888999998888754
No 190
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=48.99 E-value=69 Score=22.55 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=7.3
Q ss_pred CchHHHHHHHHHhcC
Q psy15327 80 STPEKRTDKIFRQMD 94 (127)
Q Consensus 80 ~~~~~~~~~~f~~~d 94 (127)
.++.+++-...+.+|
T Consensus 302 ~itReeal~~v~~~d 316 (343)
T TIGR03573 302 RITREEAIELVKEYD 316 (343)
T ss_pred CCCHHHHHHHHHHhc
Confidence 344455555555543
No 191
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=48.90 E-value=40 Score=17.75 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 93 (127)
.+..+...++.+.+--+-..++..++..+...+| ....++.+..+|+.|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG--------~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITG--------EVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCT--------SS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC--------CCChHHHHHHHHHhh
Confidence 4444555554443333555667777777655444 466788888888765
No 192
>KOG4070|consensus
Probab=47.54 E-value=22 Score=22.04 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHHhhhhhhcc----CCCC-cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 37 KLRWAFSMYDL----DGNG-YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 37 ~~~~~f~~~d~----~~~g-~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.++..|+.|-. ..+| -++...+-.++..+ ++..+..++.-.....|..+....-+.++|++|.+.|.
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc--------~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ 84 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDC--------KVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALE 84 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhc--------CcccCCcccccccceeeeeccccccccccHHHHHHHHH
Confidence 34444544433 3333 36666666666654 23334455555667778777766777899999977774
Q ss_pred c
Q psy15327 112 S 112 (127)
Q Consensus 112 ~ 112 (127)
.
T Consensus 85 e 85 (180)
T KOG4070|consen 85 E 85 (180)
T ss_pred H
Confidence 4
No 193
>KOG3741|consensus
Probab=46.65 E-value=31 Score=26.24 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=40.4
Q ss_pred HHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCC--cccHHHHHHHHHHHH
Q psy15327 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNG--YISRNEMLEIVQAIY 66 (127)
Q Consensus 4 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g--~i~~~ef~~~l~~~~ 66 (127)
-+|...|.++.-.++..+.+++|..+..+..+. ..+...|... .|++.|++.++...+
T Consensus 590 YlFHqvtedg~p~lDlaHvl~CLNKLDAG~~Ek-----I~LvSrDE~t~IIvSY~ELK~~le~t~ 649 (655)
T KOG3741|consen 590 YLFHQVTEDGKPWLDLAHVLQCLNKLDAGIQEK-----ILLVSRDELTCIIVSYKELKTILEKTF 649 (655)
T ss_pred hhheEeccCCChhhhHHHHHHHhhhccccchhh-----eeEeccCCCcEEEEEHHHHHHHHHHhh
Confidence 467777888888889888999888887665542 2333334443 488999988877653
No 194
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=46.57 E-value=70 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=18.0
Q ss_pred eeHHHHHHHHHHhcCCcHHHHHHhhhh
Q psy15327 17 IDFREFLCALSVTSRGKLEQKLRWAFS 43 (127)
Q Consensus 17 i~~~ef~~~l~~~~~~~~~~~~~~~f~ 43 (127)
++.+||.+.|.......++++.+.+..
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~~e~l~ 27 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEEREEILE 27 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467889988887766655555555543
No 195
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=46.23 E-value=50 Score=20.59 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 36 ~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
.+....|..+..| =..+++|+..++...+. ......+..+.+-+... .|.++..+..+-+...|-
T Consensus 72 KEYhtsYs~vqaN--Fqcs~~DLsdii~i~f~----------~deel~~~~e~i~~~v~---~Gn~Sl~~lsr~l~~sp~ 136 (160)
T PF09824_consen 72 KEYHTSYSKVQAN--FQCSMEDLSDIIYIAFM----------SDEELRDYVEKIEKEVE---AGNTSLSDLSRKLGISPV 136 (160)
T ss_pred HHHHhhHhheeee--eEeeHHHHHHHHheeec----------CHHHHHHHHHHHHHHHH---cCCCcHHHHHHHhCCCHH
Confidence 3444444444332 23566777666654311 11222333444444443 488999999999999999
Q ss_pred HHHHhhcCCC
Q psy15327 116 IVRLLQCDPQ 125 (127)
Q Consensus 116 ~~~~~~~~~~ 125 (127)
++..+..+..
T Consensus 137 firglAKRs~ 146 (160)
T PF09824_consen 137 FIRGLAKRSP 146 (160)
T ss_pred HHHHHHHhcc
Confidence 9988877654
No 196
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=45.20 E-value=39 Score=16.54 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcC
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN 96 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~ 96 (127)
.|.|+..+|+..+. .+...+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~lg-----------------~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----------------LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----------------S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----------------ccHHHHHHHHHHHhcc
Confidence 67899999998883 4667777777777654
No 197
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=44.87 E-value=38 Score=21.53 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=22.0
Q ss_pred hcCCCCCceeHHHHHHHHHHhcC--CcHHHHHHhhhhhh
Q psy15327 9 FDANGDGTIDFREFLCALSVTSR--GKLEQKLRWAFSMY 45 (127)
Q Consensus 9 ~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~f~~~ 45 (127)
+.++...+++.++|+..+..... ..+.+.+..+|..+
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 180 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSI 180 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Confidence 44455567777777777765432 45555666666544
No 198
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=43.96 E-value=65 Score=18.73 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=17.0
Q ss_pred chHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.+.++-..+...++.=.+|.|+......++.
T Consensus 66 ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~ 96 (117)
T PF08349_consen 66 LSSEEKQHFLDLIEDYREGKIPLSVPLTLLK 96 (117)
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 3444444445555444567777766666553
No 199
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=42.99 E-value=21 Score=17.59 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhh
Q psy15327 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFS 43 (127)
Q Consensus 5 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~ 43 (127)
+|..+...+++.+|..|....+.. ..+.....+.++.+
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~-~~p~~~~~L~RimR 48 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT-SNPSAPPMLDRIMR 48 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC-T-TTHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC-CCcchHHHHHHHHH
Confidence 444454444578888888777763 22233334444443
No 200
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=42.88 E-value=32 Score=19.95 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 53 ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 53 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
++.+|+..++..+ +....-......|+....+. ..++-++...+|..+|.++
T Consensus 37 ~s~~eL~~~l~~~------------g~~~l~n~~~~~~r~~~~~~-~~ls~~e~~~ll~~~P~Li 88 (113)
T cd03033 37 WTAETLRPFFGDL------------PVAEWFNPAAPRVKSGEVVP-EALDEEEALALMIADPLLI 88 (113)
T ss_pred CCHHHHHHHHHHc------------CHHHHHhcccHHHHhcCCCc-cCCCHHHHHHHHHhCccee
Confidence 7888888887753 10000001133455443332 4578899999999888754
No 201
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=42.03 E-value=15 Score=15.97 Aligned_cols=13 Identities=38% Similarity=0.118 Sum_probs=7.9
Q ss_pred cccHHHHHHHHhc
Q psy15327 100 RLSLEEFIEGAKS 112 (127)
Q Consensus 100 ~is~~ef~~~l~~ 112 (127)
.||.+|++.++..
T Consensus 16 Gls~eeir~FL~~ 28 (30)
T PF08671_consen 16 GLSKEEIREFLEF 28 (30)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 4788888887753
No 202
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=41.40 E-value=43 Score=18.11 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=22.6
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhcc
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDL 47 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~ 47 (127)
+++...- ...|.|||.++..+|... ......+..++..+..
T Consensus 10 ~~Li~~g--K~~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 10 KKLIEKG--KKKGYLTYDEINDALPED--DLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHT
T ss_pred HHHHHHH--hhcCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHHH
Confidence 3444443 235789999999998732 3455667777776644
No 203
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=41.02 E-value=95 Score=19.83 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHhhhhhhccCCCC--cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhc-CcCCCCcccHHHHHHHHhc
Q psy15327 37 KLRWAFSMYDLDGNG--YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM-DKNQDGRLSLEEFIEGAKS 112 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g--~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-d~~~~g~is~~ef~~~l~~ 112 (127)
.+..+|..+-. ..| .++.+.|...+...++ ..+..-+.+..++..+ .......||+.||.+++..
T Consensus 20 ~vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~----------q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~ 87 (181)
T PF11422_consen 20 NVISIWEEIVQ-NHGIFAVSLDFFIKKAANRFK----------QPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLAR 87 (181)
T ss_dssp HHHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-----------TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCcceeeHHHHHHHHHHHhc----------cccccccchHHHHHHHHcCCCCceeeHHHHHHHHHH
Confidence 34444554433 455 7888888887766542 1233445566666654 3445778999999999976
No 204
>KOG2419|consensus
Probab=40.69 E-value=48 Score=25.83 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=49.5
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCC--------------
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQD-------------- 98 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~-------------- 98 (127)
.++-....++..+|.+.++.+++.+|......+-..+..... ......-....+|..+|.+++
T Consensus 434 ~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~---~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~v 510 (975)
T KOG2419|consen 434 TEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKL---AWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYV 510 (975)
T ss_pred chhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhc---chhhhcccchhheehhhccCCcccCccccchhhhc
Confidence 445566788899999999999999988766655332221100 000001124456777777777
Q ss_pred ---------CcccHHHHHHHHhc
Q psy15327 99 ---------GRLSLEEFIEGAKS 112 (127)
Q Consensus 99 ---------g~is~~ef~~~l~~ 112 (127)
|.++.++.+.++..
T Consensus 511 S~~~~~~s~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 511 SYPFLKKSFGVVTVDELVALLAL 533 (975)
T ss_pred cccccccccCeeEHHHHHHHHHH
Confidence 89999999887764
No 205
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=40.06 E-value=38 Score=17.20 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=15.8
Q ss_pred HHHHHHHHhcChhHHHHhhc
Q psy15327 103 LEEFIEGAKSDPSIVRLLQC 122 (127)
Q Consensus 103 ~~ef~~~l~~~~~~~~~~~~ 122 (127)
.++.+.+|.++|++++.+..
T Consensus 2 ~Q~iV~YLv~nPevl~kl~~ 21 (57)
T PF05952_consen 2 KQEIVNYLVQNPEVLEKLKE 21 (57)
T ss_pred hHHHHHHHHHChHHHHHHHc
Confidence 36788899999998877654
No 206
>PRK12559 transcriptional regulator Spx; Provisional
Probab=39.84 E-value=23 Score=21.16 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHH---HHHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKR---TDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
.++.+++..++..+ +.+ ..+. -...|+..+.+. ..++.++...+|..+|.++
T Consensus 36 ~~s~~el~~~l~~~------------~~g-~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Li 90 (131)
T PRK12559 36 SMTVDELKSILRLT------------EEG-ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLML 90 (131)
T ss_pred cCCHHHHHHHHHHc------------CCC-HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceE
Confidence 37888888888763 111 1122 223456555443 3578888888888888753
No 207
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=39.51 E-value=34 Score=20.32 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHHhccccCCCCCCCchHHHH---HHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 53 ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT---DKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 53 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
++.+++..++..+ + .++.+ ...++..+.+. ..++.++...+|..+|.++
T Consensus 38 ~t~~eL~~~l~~~------------g---~~~lin~~~~~~r~l~~~~-~~ls~~e~i~lm~~~P~LI 89 (126)
T TIGR01616 38 WHADTLRPYFGNK------------P---VGSWFNRAAPRVKSGEVNP-DSIDEASALALMVSDPLLI 89 (126)
T ss_pred cCHHHHHHHHHHc------------C---HHHHHhccchHhhhCCCCc-ccCCHHHHHHHHHhCcCeE
Confidence 7778877777653 1 11111 22455544332 4577888888888877643
No 208
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=38.37 E-value=85 Score=20.33 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHH
Q psy15327 84 KRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRL 119 (127)
Q Consensus 84 ~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~ 119 (127)
+.++.+++.+.. .+-.+++.+..+++.++|++.+.
T Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~p~l~~~ 230 (233)
T cd02518 196 ELIKEIYEALYP-KNPDFSLEDIIELLDKNPELFEI 230 (233)
T ss_pred HHHHHHHHHhcC-CCCCCCHHHHHHHHHhChhHHHH
Confidence 345666666643 23348999999999999998764
No 209
>KOG1954|consensus
Probab=37.40 E-value=58 Score=23.75 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=37.2
Q ss_pred HhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHH
Q psy15327 39 RWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108 (127)
Q Consensus 39 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~ 108 (127)
..+|-.+ .--+|+|+...-..-+.. ...+...+-.+++..|.+++|.++-+||.-
T Consensus 447 de~fy~l-~p~~gk~sg~~ak~~mv~--------------sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 447 DEIFYTL-SPVNGKLSGRNAKKEMVK--------------SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred Hhhhhcc-cccCceeccchhHHHHHh--------------ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3344444 234566665554444432 355667789999999999999999999974
No 210
>KOG4629|consensus
Probab=37.15 E-value=85 Score=24.75 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=33.7
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.+..+|+.+-..+.-.+..+++..++ ..+.++.++..++...+..|++..|+....
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~-------------------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv 460 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFM-------------------GDEEAERAFSLFEGASDENITRSSFKEWIV 460 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcC-------------------CHHHHHHHHHhhhhhcccCccHHHHHHHHH
Confidence 45566666655555555555544443 336677777777665555588887776553
No 211
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=36.08 E-value=83 Score=18.08 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHH---HHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT---DKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
..+.+++..++..+ +.+ ..+.+ ...|+....+. ..++-+++..++..+|.++
T Consensus 36 ~~~~~el~~~~~~~------------~~~-~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Li 90 (115)
T cd03032 36 PLTKEELKEILSLT------------ENG-VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLL 90 (115)
T ss_pred cchHHHHHHHHHHh------------cCC-HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhe
Confidence 47778888777754 111 11121 23455554333 4578899999999988864
No 212
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=36.02 E-value=63 Score=20.54 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=19.9
Q ss_pred hcCCCCCceeHHHHHHHHHHhc--CCcHHHHHHhhhhhh
Q psy15327 9 FDANGDGTIDFREFLCALSVTS--RGKLEQKLRWAFSMY 45 (127)
Q Consensus 9 ~d~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~~~f~~~ 45 (127)
+.++...+++.++|+..+.... ...+.+.+..+|..+
T Consensus 144 hn~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 182 (187)
T smart00222 144 HNPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSI 182 (187)
T ss_pred cCCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 3344445667777777666542 234455555555443
No 213
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=35.88 E-value=53 Score=19.53 Aligned_cols=52 Identities=17% Similarity=0.461 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHH---HHHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKR---TDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
..+.+++..++..+ +.+ ..+. -...|+....+. ..++.+++..++..+|.++
T Consensus 36 ~~~~~eL~~~l~~~------------~~g-~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Li 90 (131)
T PRK01655 36 PLTIDEIKQILRMT------------EDG-TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLL 90 (131)
T ss_pred hhhHHHHHHHHHHh------------cCC-HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceE
Confidence 36677777777654 111 1122 223455554443 3578888988888888753
No 214
>KOG2871|consensus
Probab=35.71 E-value=35 Score=24.55 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=27.8
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+.+.++++|..+|+.+.|+|+-+-+..++..+
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 45789999999999999999998888887765
No 215
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=35.51 E-value=55 Score=18.74 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHH---HHHHHhcCcCCC-CcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT---DKIFRQMDKNQD-GRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~~~~-g~is~~ef~~~l~~~~~~~ 117 (127)
..+.+++..++... +.+ ..+.+ ...|+....+.. ..++.++...+|..+|.++
T Consensus 35 ~~~~~el~~~~~~~------------~~~-~~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Li 91 (111)
T cd03036 35 PPSKEELKKWLEKS------------GLP-LKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLI 91 (111)
T ss_pred cccHHHHHHHHHHc------------CCC-HHHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCee
Confidence 37788887777654 111 11111 224555544322 2468889999998888754
No 216
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.47 E-value=56 Score=17.39 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.1
Q ss_pred CCCcccHHHHHHHHhcChhHHHHh
Q psy15327 97 QDGRLSLEEFIEGAKSDPSIVRLL 120 (127)
Q Consensus 97 ~~g~is~~ef~~~l~~~~~~~~~~ 120 (127)
..|+++-+||..++...|.+...+
T Consensus 27 ~~Gkv~~ee~n~~~e~~p~~~~~l 50 (75)
T TIGR02675 27 ASGKLRGEEINSLLEALPGALQAL 50 (75)
T ss_pred HcCcccHHHHHHHHHHhHHHHHHH
Confidence 468888888888887777665554
No 217
>PLN02223 phosphoinositide phospholipase C
Probab=35.41 E-value=1.7e+02 Score=22.37 Aligned_cols=62 Identities=6% Similarity=-0.109 Sum_probs=39.5
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHH---HHhcC--CcHHHHHHhhhhhhccC--------CCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCAL---SVTSR--GKLEQKLRWAFSMYDLD--------GNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l---~~~~~--~~~~~~~~~~f~~~d~~--------~~g~i~~~ef~~~l~~ 64 (127)
++.+|..+. .+.|.++...+..++ ..... ....+.++.++..+-.. ..+.++.+.|..++-+
T Consensus 18 v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 18 ILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 567888883 667889988888888 33322 23344555555543222 2356999999888754
No 218
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=35.08 E-value=73 Score=18.71 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=15.3
Q ss_pred eeHHHHHHHHHHhcCCcHHH
Q psy15327 17 IDFREFLCALSVTSRGKLEQ 36 (127)
Q Consensus 17 i~~~ef~~~l~~~~~~~~~~ 36 (127)
+||+.|...|...+......
T Consensus 74 lsYS~fi~gLkkA~I~inRK 93 (118)
T COG0292 74 LSYSRFINGLKKAGIEIDRK 93 (118)
T ss_pred CcHHHHHHHHHHcCchhhHH
Confidence 88999999998776665543
No 219
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=34.41 E-value=9.2 Score=16.62 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=12.0
Q ss_pred HHHHhcCcCCCCcccHHH
Q psy15327 88 KIFRQMDKNQDGRLSLEE 105 (127)
Q Consensus 88 ~~f~~~d~~~~g~is~~e 105 (127)
.++..=|++++-.||.++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 345556778887787654
No 220
>KOG4629|consensus
Probab=34.38 E-value=1e+02 Score=24.31 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=38.1
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
+.+|...-..+.-.+...++...+ ..+.++.++..++...++.|+.+.|+..+..++.
T Consensus 407 ~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 407 RKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 344554444443344333333333 3578999999998877777999999998887754
No 221
>COG1017 Hmp Hemoglobin-like flavoprotein [Energy production and conversion]
Probab=33.62 E-value=36 Score=20.87 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=21.9
Q ss_pred cccHHHHHHHHhcChhHHHHhhcCCC
Q psy15327 100 RLSLEEFIEGAKSDPSIVRLLQCDPQ 125 (127)
Q Consensus 100 ~is~~ef~~~l~~~~~~~~~~~~~~~ 125 (127)
.||..=|.+++..+|++.++|++..|
T Consensus 23 ~iT~~FY~~MF~~hPEl~niFN~~nQ 48 (150)
T COG1017 23 TITAHFYKRMFAHHPELKNIFNMANQ 48 (150)
T ss_pred HHHHHHHHHHHhhCHHHHHHHhHhhh
Confidence 47878888899999999999987654
No 222
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=32.59 E-value=1e+02 Score=17.56 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=36.2
Q ss_pred eeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 17 IDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 17 i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
+.-.+|...+..+....+++++..+-..+-..+....+..++...+..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v 68 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRV 68 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 6777888888888878888888888888866666656777777777776
No 223
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.45 E-value=1.1e+02 Score=17.85 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 53 ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 53 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
+++-.++.-+..+++.++.....+...... -..++.++. .|.|+.+|-.+++.
T Consensus 69 ~sYptvR~kld~vlramgy~p~~e~~~~i~---~~~i~~qle---~Gei~peeA~~~L~ 121 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGYNPDSENSVNIG---KKKIIDQLE---KGEISPEEAIKMLN 121 (122)
T ss_pred CccHHHHHHHHHHHHHcCCCCCCCChhhhh---HHHHHHHHH---cCCCCHHHHHHHhc
Confidence 455556666666666666544433333222 233555553 47888888877764
No 224
>PRK10026 arsenate reductase; Provisional
Probab=32.42 E-value=53 Score=20.02 Aligned_cols=52 Identities=10% Similarity=0.277 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHH---HHHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT---DKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
.++.+|+..++..+ +. ...+.+ ...|+.+..+.+ .++.++...+|..+|.++
T Consensus 38 ppt~~eL~~~l~~~------------g~-~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LI 92 (141)
T PRK10026 38 PPTRDELVKLIADM------------GI-SVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILI 92 (141)
T ss_pred CcCHHHHHHHHHhC------------CC-CHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccce
Confidence 37888888888754 11 112222 235666654433 478899999998888743
No 225
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=31.34 E-value=1.1e+02 Score=17.57 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHH---HHHHhcCcCCCCcccHHHHHHHHhcChhHH
Q psy15327 51 GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTD---KIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 117 (127)
Q Consensus 51 g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~~~~g~is~~ef~~~l~~~~~~~ 117 (127)
..++.+|+..++..+ +.+ ..+.++ ..|+....+. ..++-++...+|..+|.++
T Consensus 34 ~~~t~~el~~~l~~~------------~~~-~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~Li 89 (112)
T cd03034 34 TPPTAAELRELLAKL------------GIS-PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILI 89 (112)
T ss_pred CCcCHHHHHHHHHHc------------CCC-HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcc
Confidence 348888888888764 111 122222 2355544332 4688999999999988764
No 226
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=30.99 E-value=76 Score=15.71 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCCceeHHHHHHHHHHhcCCcHHHHHHhhh
Q psy15327 13 GDGTIDFREFLCALSVTSRGKLEQKLRWAF 42 (127)
Q Consensus 13 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f 42 (127)
.+|.|+..||-.-+...........+..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 367888888888777655444444444443
No 227
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=30.98 E-value=42 Score=18.24 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.7
Q ss_pred CCCcccHHHHHHHHhcChhHHH
Q psy15327 97 QDGRLSLEEFIEGAKSDPSIVR 118 (127)
Q Consensus 97 ~~g~is~~ef~~~l~~~~~~~~ 118 (127)
..+.||++||..+-.....++.
T Consensus 32 APmSIS~eeY~~LH~~fN~i~~ 53 (81)
T PF10891_consen 32 APMSISFEEYIRLHIKFNEIFN 53 (81)
T ss_pred cccEeeHHHHHHHHHHHHHHHh
Confidence 4678999999998877665543
No 228
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=30.87 E-value=2.1e+02 Score=20.79 Aligned_cols=63 Identities=10% Similarity=0.248 Sum_probs=37.2
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhh
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 121 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~ 121 (127)
.|.+++..+..++..++.... -+..++.+..+-..+. ++...-+..+.+..+...-++++.+.
T Consensus 92 ~g~~D~~~l~~~i~~~l~~~C--------AP~RD~~v~~l~~~~~-~~~~~~~~~~~V~~lr~if~~le~Mk 154 (441)
T PF05794_consen 92 HGVLDLVKLARFIISLLKKLC--------APMRDEEVKALVEKIE-EGCTESSATDIVDGLRFIFEILELMK 154 (441)
T ss_pred cCCcCHHHHHHHHHHHHHHhC--------CCCCcHHHHHHHHHHH-hccccCCHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877765433 3566677777777664 22222344455555544444444443
No 229
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=30.86 E-value=1.1e+02 Score=17.30 Aligned_cols=54 Identities=19% Similarity=0.368 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHh
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~ 120 (127)
+|.+|.++...+-. .+...+.+..++..+- .-|.-.|.-|+.++...|.+.+.+
T Consensus 33 ~gIlT~~~~e~I~a---------------~~T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e~~~l~~~l 86 (94)
T cd08327 33 EGILTESHVEEIES---------------QTTSRRKTMKLLDILP--SRGPKAFHAFLDSLEEFPWVRDKL 86 (94)
T ss_pred CCCCCHHHHHHHHc---------------cCChHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHHHH
Confidence 56788777655543 3556677777777653 456678899999998877665443
No 230
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=30.36 E-value=1.2e+02 Score=19.40 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=19.6
Q ss_pred cCCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhh
Q psy15327 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSM 44 (127)
Q Consensus 10 d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~ 44 (127)
..+.+|.++..+++..+..-....+.+.++.+...
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 35778999999999988865444555666666543
No 231
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.99 E-value=40 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=14.4
Q ss_pred hhcCCCCCceeHHHHHHHHHHh
Q psy15327 8 TFDANGDGTIDFREFLCALSVT 29 (127)
Q Consensus 8 ~~d~~~~g~i~~~ef~~~l~~~ 29 (127)
....+..|..+|+||+..+...
T Consensus 80 al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 80 ALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHHhcCCccHHHHHHHHHhC
Confidence 3444556777777777777654
No 232
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=29.98 E-value=84 Score=15.90 Aligned_cols=63 Identities=5% Similarity=0.042 Sum_probs=32.9
Q ss_pred cHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 33 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
.+...++.+++.- .+...++.+- ..++..... .........+......++...|+++++...+
T Consensus 3 lP~a~vkri~k~~--~~~~~vs~ea-~~~i~~a~e------------~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 3 LPLARVKRIMKSD--PDVMRVSKEA-VEAIAKAAE------------EFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp S-HHHHHHHHHHT--STTSEE-HHH-HHHHHHHHH------------HHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CChHHHHHHhccC--CCccchhHHH-HHHHHHHHH------------HHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 3455677777764 3334466554 333333321 1122445555665656677789999887653
No 233
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=29.86 E-value=92 Score=18.80 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCC-cccHHHHHHH
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG-RLSLEEFIEG 109 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g-~is~~ef~~~ 109 (127)
+..||.+||.+.+..-..+. .--........+.+..+...+...+.+ .+|..|..++
T Consensus 81 d~~Ls~eEf~~L~~~~~~LV---~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 81 DEELSEEEFEQLVEQKRPLV---RFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CEECCHHHHHHHHHcCCCeE---EECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 44577777777665421100 000112344566777777777665544 4888877654
No 234
>KOG0506|consensus
Probab=29.73 E-value=1.3e+02 Score=22.75 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHH---hcCc----C-CCCcccHHHHHH
Q psy15327 37 KLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFR---QMDK----N-QDGRLSLEEFIE 108 (127)
Q Consensus 37 ~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---~~d~----~-~~g~is~~ef~~ 108 (127)
.-..+|..+-...++.+++-.|..++++. |...++-.+..++. .++. + ..+.++.+.|++
T Consensus 87 leDLLFyLiaegq~ekipihKFiTALkst------------GLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKk 154 (622)
T KOG0506|consen 87 LEDLLFYLIAEGQSEKIPIHKFITALKST------------GLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKK 154 (622)
T ss_pred hhhhhhHHhhcCCcCcccHHHHHHHHHHc------------CCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHH
Confidence 45567888866667999999999999886 33333333333333 2332 2 335689999999
Q ss_pred HHhc
Q psy15327 109 GAKS 112 (127)
Q Consensus 109 ~l~~ 112 (127)
++..
T Consensus 155 cI~s 158 (622)
T KOG0506|consen 155 CIFS 158 (622)
T ss_pred hhcc
Confidence 8765
No 235
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=29.66 E-value=29 Score=18.83 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=22.7
Q ss_pred CceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCccc
Q psy15327 15 GTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYIS 54 (127)
Q Consensus 15 g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~ 54 (127)
|+-.--+|-.+|..++...-+..++.+.+.+. -++|++.
T Consensus 39 ~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E 77 (88)
T PF15144_consen 39 GKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFME 77 (88)
T ss_pred CCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCcee
Confidence 44334456666666666667777777777663 3344443
No 236
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=29.08 E-value=57 Score=21.95 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhcCh
Q psy15327 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDP 114 (127)
Q Consensus 35 ~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~ 114 (127)
++..-.+|+.+|.-. ...-+++.+++..-............-......+++.+..-. .+-+..++.++|..++..--
T Consensus 12 dSf~L~~fR~ld~~r--~~~s~~l~~iL~~E~tyLY~i~cli~ykd~q~~ei~~L~eW~-~~l~~d~~le~fk~~y~~Kl 88 (250)
T PF05214_consen 12 DSFFLYIFRHLDMIR--MAPSKELTKILASEVTYLYHIACLITYKDVQKEEIEQLIEWA-ANLGSDIDLEQFKIMYMDKL 88 (250)
T ss_dssp HHHHHHHHHHHCGGG--G-SSHHHHHHHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHH-HHS-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHH
Confidence 345556777777654 233344554443221111000000001233445555554322 33333488888888877655
Q ss_pred hHHHHhhcCCCC
Q psy15327 115 SIVRLLQCDPQN 126 (127)
Q Consensus 115 ~~~~~~~~~~~~ 126 (127)
.-+++-+..|++
T Consensus 89 ~eLNL~~lqP~~ 100 (250)
T PF05214_consen 89 EELNLRALQPKN 100 (250)
T ss_dssp HHTT-GGGS-S-
T ss_pred HHhCcccCCCCc
Confidence 666666666665
No 237
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=28.78 E-value=1e+02 Score=16.57 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHHHhcCcC-CCCcccHHHHHHHH
Q psy15327 78 DESTPEKRTDKIFRQMDKN-QDGRLSLEEFIEGA 110 (127)
Q Consensus 78 ~~~~~~~~~~~~f~~~d~~-~~g~is~~ef~~~l 110 (127)
+.+...+.+..++...+.+ --+.++.+|+.+++
T Consensus 53 G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 53 GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 4566778889999988554 45689999998765
No 238
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=28.07 E-value=1.3e+02 Score=19.12 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCCCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHH
Q psy15327 11 ANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRN 56 (127)
Q Consensus 11 ~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ 56 (127)
.+.+|.++..+++..+.......+.+.+..+.. .|..++..++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~---~d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVE---SDDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHH---cCCCcceEec
Confidence 467899999999998875444556666666655 3344444443
No 239
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=27.91 E-value=1.6e+02 Score=19.35 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=9.3
Q ss_pred CCceeHHHHHHHHHHh
Q psy15327 14 DGTIDFREFLCALSVT 29 (127)
Q Consensus 14 ~g~i~~~ef~~~l~~~ 29 (127)
.|+|+-.+|..++..+
T Consensus 39 ~G~Id~~e~kkav~~l 54 (215)
T PF09873_consen 39 PGKIDVEEFKKAVYSL 54 (215)
T ss_pred CCcccHHHHHHHHHHH
Confidence 4666666666665543
No 240
>KOG2301|consensus
Probab=27.62 E-value=41 Score=29.02 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=40.5
Q ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHhcCCc----HHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGK----LEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 3 ~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~----~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
.+++..+|++.+|.|.+.+....+..+..+. +.+. +.+-.-+....+|.+++.+...++..
T Consensus 1420 ~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1420 YEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 4678889999999999999999988764421 1111 33333334456677887777766654
No 241
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=27.39 E-value=1.2e+02 Score=16.83 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=32.3
Q ss_pred CCCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 13 GDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 13 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
++|.|+-+++-.... ...+.+++++++...-. .|.-..+-|..++..+
T Consensus 26 ~n~~it~E~y~~V~a---~~T~qdkmRkLld~v~a--kG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVCA---CPTQPDKVRKILDLVQS--KGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHHh---CCCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHH
Confidence 356788888777664 34777889999988544 3444566666666654
No 242
>KOG4301|consensus
Probab=26.87 E-value=1.2e+02 Score=21.68 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=38.9
Q ss_pred hhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 40 WAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 40 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.+...+|+.+.|.++.-...-.+..+ ..+...+..+-+|.... +..|.+.+-.|.+++.
T Consensus 114 flLaA~ds~~~g~~~vfavkialatl------------c~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATL------------CGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhh------------ccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 34457788889988887777766654 22344567888888874 5677655555555443
No 243
>KOG3449|consensus
Probab=26.64 E-value=1.4e+02 Score=17.44 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=28.7
Q ss_pred hhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcC
Q psy15327 41 AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94 (127)
Q Consensus 41 ~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d 94 (127)
.|-++...++...+-.++..++..+ +.....+.++.++..+.
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sV------------G~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESV------------GAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHh------------CcccCHHHHHHHHHHhc
Confidence 3444555666667777777777776 56677777777777774
No 244
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=26.48 E-value=43 Score=20.36 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHHHHH
Q psy15327 52 YISRNEMLEIVQAIYKM 68 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~ 68 (127)
.||.+|++.++..+...
T Consensus 9 ~vTldevr~Av~~f~~~ 25 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEED 25 (140)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 47888999888887543
No 245
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=26.45 E-value=2.6e+02 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=13.2
Q ss_pred cCcCCCCcccHHHHHHHHhcChh
Q psy15327 93 MDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 93 ~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
.|.++.|.|+.-+..+++. .|.
T Consensus 208 ~~~~GrG~IniL~a~~l~~-~P~ 229 (502)
T PF05872_consen 208 TDADGRGVINILAADKLMN-SPK 229 (502)
T ss_pred cCCCCCEEEEEEEhHhhhh-CcH
Confidence 4456777777666655444 444
No 246
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=26.27 E-value=82 Score=14.76 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=9.9
Q ss_pred HHHHHhcChhHHHHhhc
Q psy15327 106 FIEGAKSDPSIVRLLQC 122 (127)
Q Consensus 106 f~~~l~~~~~~~~~~~~ 122 (127)
...++..+|+.+..|..
T Consensus 28 v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 28 VSELLRGHPDLLEEFNR 44 (47)
T ss_dssp HHHHTTT-HHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHh
Confidence 34455678887776653
No 247
>PF14003 YlbE: YlbE-like protein
Probab=25.78 E-value=68 Score=16.81 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=12.7
Q ss_pred HHHHHHhcChhHHHHhhcCCC
Q psy15327 105 EFIEGAKSDPSIVRLLQCDPQ 125 (127)
Q Consensus 105 ef~~~l~~~~~~~~~~~~~~~ 125 (127)
|+..++..+|..-..|+.+|+
T Consensus 3 el~~fiR~~P~WYR~LsR~P~ 23 (65)
T PF14003_consen 3 ELRQFIREQPIWYRILSRNPE 23 (65)
T ss_pred HHHHHHHHCcHHHHHHccCHH
Confidence 455566666666666666654
No 248
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.51 E-value=1.3e+02 Score=16.62 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=12.6
Q ss_pred CceeHHHHHHHHHHhcC
Q psy15327 15 GTIDFREFLCALSVTSR 31 (127)
Q Consensus 15 g~i~~~ef~~~l~~~~~ 31 (127)
..++|+++.+-++.++.
T Consensus 18 ~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 18 PSISLEELCNEVRDMCR 34 (83)
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 35788888888887654
No 249
>PF11269 DUF3069: Protein of unknown function (DUF3069); InterPro: IPR021422 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria. ; PDB: 2PV4_A.
Probab=25.37 E-value=1.5e+02 Score=17.54 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=10.2
Q ss_pred HHHHHHhcCcCCCCcccHHHHHHH
Q psy15327 86 TDKIFRQMDKNQDGRLSLEEFIEG 109 (127)
Q Consensus 86 ~~~~f~~~d~~~~g~is~~ef~~~ 109 (127)
++.+.+.+.+-....+-..+|..+
T Consensus 96 lKd~vKqLKKAR~d~~mk~~f~~V 119 (121)
T PF11269_consen 96 LKDMVKQLKKARRDPSMKNSFKEV 119 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444443333444444555444
No 250
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=25.35 E-value=1.2e+02 Score=16.30 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhh
Q psy15327 83 EKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 121 (127)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~ 121 (127)
++.+..+++.++.+++..-...|. ..++.|+++.+++
T Consensus 24 d~kvk~mlklieedgdSfakrAEm--yy~kRp~Li~~ve 60 (74)
T PF07765_consen 24 DEKVKAMLKLIEEDGDSFAKRAEM--YYKKRPELISLVE 60 (74)
T ss_pred HHHHHHHHHHhccCcchHHHhhHH--HhcccHHHHHHHH
Confidence 355777788787665544333333 2577788777664
No 251
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.32 E-value=1.3e+02 Score=16.36 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh-cChhHHH
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK-SDPSIVR 118 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~-~~~~~~~ 118 (127)
.|.|+-++...+-. .....+.++.++....+ -|...+.-|...++ ..|.+..
T Consensus 27 ~~Vit~e~~~~I~a---------------~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 27 KKVITQEQYSEVRA---------------EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred CCCCCHHHHHHHHc---------------CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChHHHh
Confidence 46788877665553 35667888888887754 57778889999887 4666554
No 252
>KOG4403|consensus
Probab=25.32 E-value=2e+02 Score=21.41 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHhcC-CcHHHHHHhhhhhhccCCCCcccHHHHHHHHHH
Q psy15327 2 AEHVFRTFDANGDGTIDFREFLCALSVTSR-GKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64 (127)
Q Consensus 2 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~ 64 (127)
++.+-+.+|-|.+|.|+.+|--.+|+.-.+ .....+-...|.- .|..|+.+++..++..
T Consensus 70 ir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 70 IRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 456777889999999999998888874322 2222222223322 4556999998887764
No 253
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=25.09 E-value=1.9e+02 Score=18.46 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=25.2
Q ss_pred CceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHHHHH
Q psy15327 15 GTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66 (127)
Q Consensus 15 g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 66 (127)
..|+|.++..-.+.-. -+..-.+++..+-.-..|.++..+|..-+..++
T Consensus 2 rIIdFnelKNKvkdkD---iDKFE~YiY~ly~~~a~Gklsm~dFsk~I~~Ym 50 (186)
T PF12983_consen 2 RIIDFNELKNKVKDKD---IDKFEEYIYSLYYDVAEGKLSMADFSKKIMEYM 50 (186)
T ss_pred ceecHHHHhhhccccc---HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 3566777666655321 112223344444333566677777666555544
No 254
>KOG1785|consensus
Probab=25.08 E-value=2.9e+02 Score=20.43 Aligned_cols=71 Identities=6% Similarity=0.012 Sum_probs=42.1
Q ss_pred HHHHHHhhhhhhccCCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHH---HHHHH
Q psy15327 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE---FIEGA 110 (127)
Q Consensus 34 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~e---f~~~l 110 (127)
....+...|+.. -.....+.+..|.+.+...+ .. .+.-++-.+=..+|...++.||.-| |.+++
T Consensus 173 TKadA~~FWr~~-fg~k~ivPW~~F~q~L~~~H-------pi-----~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF 239 (563)
T KOG1785|consen 173 TKADAAEFWRKH-FGKKTIVPWKTFRQALHKVH-------PI-----SSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF 239 (563)
T ss_pred ccccHHHHHHHh-cCCcccccHHHHHHHHHhcC-------CC-----cchhHHHHhhceeccccccceeeehhhhHHHhh
Confidence 344556666665 45566799999999988752 11 1112233334468888899987555 45555
Q ss_pred hcChhHH
Q psy15327 111 KSDPSIV 117 (127)
Q Consensus 111 ~~~~~~~ 117 (127)
+.-+.++
T Consensus 240 qPw~tll 246 (563)
T KOG1785|consen 240 QPWKTLL 246 (563)
T ss_pred ccHHHHH
Confidence 5444443
No 255
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=25.05 E-value=54 Score=16.66 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHHhcChhHHHHhhcCCC
Q psy15327 103 LEEFIEGAKSDPSIVRLLQCDPQ 125 (127)
Q Consensus 103 ~~ef~~~l~~~~~~~~~~~~~~~ 125 (127)
.+++...|..+|.....|...|.
T Consensus 7 P~dl~~aL~~~p~a~~~f~~l~~ 29 (63)
T PF13376_consen 7 PEDLEAALEANPEAKEFFESLTP 29 (63)
T ss_pred CHHHHHHHHCCHHHHHHHHHCCH
Confidence 46777788888887777776653
No 256
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=24.88 E-value=1.5e+02 Score=17.42 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCCCCchHHHH---HHHHHhcCcCCCCcccHHHHHHHHhcChhH
Q psy15327 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT---DKIFRQMDKNQDGRLSLEEFIEGAKSDPSI 116 (127)
Q Consensus 52 ~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~~~~g~is~~ef~~~l~~~~~~ 116 (127)
.++.+++..++..+ +.. .++.+ ...|+.++. ....++-++....+..+|.+
T Consensus 37 ~~s~~eL~~~l~~~------------g~~-~~~li~t~~~~~r~L~~-~~~~~~~~~~~~~i~~~~~L 90 (117)
T COG1393 37 PPSREELKKILSKL------------GDG-VEELINTRGTTYRELNL-DKEDLSDEELIEALLENPSL 90 (117)
T ss_pred CCCHHHHHHHHHHc------------Ccc-HHHHHHhccchHHHcCC-cccccChHHHHHHHHhChhh
Confidence 38889998888875 211 22222 335666662 23457778888888777743
No 257
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=24.81 E-value=1.2e+02 Score=15.93 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=5.1
Q ss_pred ccHHHHHHHHH
Q psy15327 53 ISRNEMLEIVQ 63 (127)
Q Consensus 53 i~~~ef~~~l~ 63 (127)
|+.+|+.++++
T Consensus 30 vs~~el~a~lr 40 (68)
T PF07308_consen 30 VSKAELSAWLR 40 (68)
T ss_pred cCHHHHHHHHC
Confidence 44444444443
No 258
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=24.59 E-value=2.3e+02 Score=19.25 Aligned_cols=53 Identities=11% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHh
Q psy15327 48 DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111 (127)
Q Consensus 48 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~ 111 (127)
.-||.++-.|.. ..+.++..++. .......+..+|+.-.. ...+++++.+.+.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l-------~~~~r~~a~~lf~~~k~---~~~~l~~~~~~~~ 119 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNL-------HGEARRAAQQAFREGKE---PDFPLREKLRQFR 119 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCC-------CHHHHHHHHHHHHHhcc---cCCCHHHHHHHHH
Confidence 558899999987 66666543332 11122335566665432 3356666666553
No 259
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=24.57 E-value=1.2e+02 Score=18.31 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=15.4
Q ss_pred CCcccHHHHHHHHhcChhHHH
Q psy15327 98 DGRLSLEEFIEGAKSDPSIVR 118 (127)
Q Consensus 98 ~g~is~~ef~~~l~~~~~~~~ 118 (127)
+|.||..||++.+.+..-+..
T Consensus 42 ng~IsVreFVr~La~S~~yr~ 62 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRK 62 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHH
Confidence 688999999999877555433
No 260
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=24.43 E-value=1.2e+02 Score=19.33 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=14.5
Q ss_pred cCCCCCceeHHHHHHHHHHh--cCCcHHHHHHhhhhh
Q psy15327 10 DANGDGTIDFREFLCALSVT--SRGKLEQKLRWAFSM 44 (127)
Q Consensus 10 d~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~f~~ 44 (127)
.++...+++.++|+..+... +...+.+.+..+|..
T Consensus 148 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~ 184 (190)
T PF01369_consen 148 NPNIKKKMTKEDFIKNTRGIDDGKDIPEEFLESIYDS 184 (190)
T ss_dssp -TTSSSS--HHHHHHHTTTTBTTBS--HHHHHHHHHH
T ss_pred hhccccCCcHHHHHHHhhcccCCCCCCHHHHHHHHHH
Confidence 33334456666666666543 223444444444443
No 261
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=24.25 E-value=1.1e+02 Score=15.53 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHHHhcCcCCCCcccHHHHHHHHhcCh
Q psy15327 88 KIFRQMDKNQDGRLSLEEFIEGAKSDP 114 (127)
Q Consensus 88 ~~f~~~d~~~~g~is~~ef~~~l~~~~ 114 (127)
-+|..+..+++|..+++-+.++-....
T Consensus 18 Y~yhLYrsek~G~rdYEKY~~LAL~D~ 44 (56)
T TIGR02736 18 YIYHLYRSQKKGERDYEKYANLALNDD 44 (56)
T ss_pred HHHHhhhhhcccccCHHHHhhhhcccc
Confidence 356667778889999999988765543
No 262
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=24.18 E-value=1.2e+02 Score=15.63 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=16.5
Q ss_pred HHhhhhhhccCCCCcccHHHHHHHHHHHH
Q psy15327 38 LRWAFSMYDLDGNGYISRNEMLEIVQAIY 66 (127)
Q Consensus 38 ~~~~f~~~d~~~~g~i~~~ef~~~l~~~~ 66 (127)
+..+...+....+.-++.+|+..+++++.
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSIA 66 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44444444444455577777777666653
No 263
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=24.06 E-value=84 Score=18.46 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=8.5
Q ss_pred CCCcccHHHHHHHHHHH
Q psy15327 49 GNGYISRNEMLEIVQAI 65 (127)
Q Consensus 49 ~~g~i~~~ef~~~l~~~ 65 (127)
-||.++.+|...+...+
T Consensus 36 aDG~v~~~E~~~i~~~~ 52 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLL 52 (140)
T ss_dssp TTSS--CHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 46667777765554443
No 264
>PF15601 Imm42: Immunity protein 42
Probab=23.68 E-value=85 Score=19.03 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCCcccHHHHHHHHhcChhHHHHhhcCCCC
Q psy15327 97 QDGRLSLEEFIEGAKSDPSIVRLLQCDPQN 126 (127)
Q Consensus 97 ~~g~is~~ef~~~l~~~~~~~~~~~~~~~~ 126 (127)
-+|.+.+++..+++....++...|+..|..
T Consensus 46 Y~g~L~~~~~~~A~~eL~~I~~~l~~~~p~ 75 (134)
T PF15601_consen 46 YRGYLRYEELEKALKELEEIRKELKKFPPS 75 (134)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHhcCChh
Confidence 358899999999888888888888777753
No 265
>PHA02335 hypothetical protein
Probab=23.50 E-value=1.2e+02 Score=17.60 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHhcCcCCCCcccHHHHHHHHhcChhHHHHhhcC
Q psy15327 85 RTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCD 123 (127)
Q Consensus 85 ~~~~~f~~~d~~~~g~is~~ef~~~l~~~~~~~~~~~~~ 123 (127)
.+.-+++.+. +...||++||..-+++...+-.++..-
T Consensus 11 ~m~fAi~~Y~--np~sVt~ddf~~DlkRi~yIkrllKRy 47 (118)
T PHA02335 11 YMLFAIKNYN--NPQSVTYDDFEEDLKRFKYIKRLFKRY 47 (118)
T ss_pred HHHHHHHhcC--CcccccHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555553 345688888888887777766665543
No 266
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=22.91 E-value=1.8e+02 Score=18.75 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=34.0
Q ss_pred CCceeHHHHHHHHHHhcCCcHHHHHHhhhhhhccCCCCcccHHHHHHHHH
Q psy15327 14 DGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63 (127)
Q Consensus 14 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~l~ 63 (127)
...++..++...+..+.......-.+.+...++. -.-.=+++||...+.
T Consensus 94 k~~v~~~el~~~i~~ll~~i~~~l~~~A~~~~~~-~~~~~~~~e~~~~~~ 142 (202)
T cd00862 94 KKTVPLAELVEKVPELLDEIQEDLYERALEFRDA-TRIVDTWEEFKEALN 142 (202)
T ss_pred ceEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-eEeeCCHHHHHHHHh
Confidence 4578889998888776666666666777777665 222235888888885
No 267
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=22.90 E-value=65 Score=16.71 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=12.9
Q ss_pred cccHHHHHHHHhcChh
Q psy15327 100 RLSLEEFIEGAKSDPS 115 (127)
Q Consensus 100 ~is~~ef~~~l~~~~~ 115 (127)
.|+.+.|.+++.++|+
T Consensus 76 ~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 76 RIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEHHHHHHHHHHSHH
T ss_pred EEeHHHHHHHHHhCcC
Confidence 4788889888888774
No 268
>PRK10853 putative reductase; Provisional
Probab=22.82 E-value=42 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=10.4
Q ss_pred cHHHHHHHHhcChhH
Q psy15327 102 SLEEFIEGAKSDPSI 116 (127)
Q Consensus 102 s~~ef~~~l~~~~~~ 116 (127)
+.++...+|..+|.+
T Consensus 75 ~~~e~~~ll~~~P~L 89 (118)
T PRK10853 75 DAASAAALMLEQPAI 89 (118)
T ss_pred CHHHHHHHHHhCcCe
Confidence 447777777777764
No 269
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=22.52 E-value=1.5e+02 Score=16.58 Aligned_cols=30 Identities=10% Similarity=0.303 Sum_probs=2.6
Q ss_pred HHHHHHhcCcCCCCcccHHHHHHHHhcChh
Q psy15327 86 TDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115 (127)
Q Consensus 86 ~~~~f~~~d~~~~g~is~~ef~~~l~~~~~ 115 (127)
+..+.......+.+.|+.++|.-++..+|.
T Consensus 40 ~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~ 69 (93)
T PF02269_consen 40 CQEAMEVAQRRGSKKIKVEDLLFLLRKDPK 69 (93)
T ss_dssp HHHHHC------------------------
T ss_pred HHHHHHHHhccccCcCcHHHHHHHHhcCHH
Confidence 344444444556788999999998888776
No 270
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=22.48 E-value=1.4e+02 Score=16.05 Aligned_cols=27 Identities=4% Similarity=-0.032 Sum_probs=18.9
Q ss_pred HhhhhhhccCCCCcccHHHHHHHHHHH
Q psy15327 39 RWAFSMYDLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 39 ~~~f~~~d~~~~g~i~~~ef~~~l~~~ 65 (127)
..|...+....++.++..|+.+.+..-
T Consensus 8 ~LI~~Ai~~sp~~~lTL~eIy~~I~~~ 34 (78)
T cd00059 8 ALIAMAIQSSPEKRLTLSEIYKWISDN 34 (78)
T ss_pred HHHHHHHHhCCCCCeeHHHHHHHHHHh
Confidence 344555556778889988888877653
No 271
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=22.36 E-value=1.3e+02 Score=15.36 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=19.9
Q ss_pred CcHHHHHHhhhhhh--ccCCCCcccHHHHHHHHHHH
Q psy15327 32 GKLEQKLRWAFSMY--DLDGNGYISRNEMLEIVQAI 65 (127)
Q Consensus 32 ~~~~~~~~~~f~~~--d~~~~g~i~~~ef~~~l~~~ 65 (127)
..+-+++....+.+ +. +...++.+|+..++...
T Consensus 11 sl~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 35556777777777 33 33458888888888765
No 272
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.36 E-value=1.8e+02 Score=17.10 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHH
Q psy15327 53 ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGA 110 (127)
Q Consensus 53 i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l 110 (127)
|++..++.-+..+...++.. +............++..+. +|.||.++-.+.+
T Consensus 61 iSYPTvR~rLd~ii~~lg~~---~~~~~~~~~~~~~IL~~L~---~GeIs~eeA~~~L 112 (113)
T PF09862_consen 61 ISYPTVRNRLDKIIEKLGYE---EDEEEEEEDERKEILDKLE---KGEISVEEALEIL 112 (113)
T ss_pred CCcHHHHHHHHHHHHHhCCC---CCcccccchhHHHHHHHHH---cCCCCHHHHHHHh
Confidence 67777777777776666651 1122334455666777775 6899999987765
No 273
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=22.13 E-value=85 Score=17.18 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=21.4
Q ss_pred hhhhhhccCCCCcccHHHHHHHHHHHHH
Q psy15327 40 WAFSMYDLDGNGYISRNEMLEIVQAIYK 67 (127)
Q Consensus 40 ~~f~~~d~~~~g~i~~~ef~~~l~~~~~ 67 (127)
.=|+++-.+.+...+++||.+.+..+++
T Consensus 9 aEfRRFsl~r~~~~~f~ef~~ll~~lH~ 36 (80)
T cd06403 9 AEFRRFSLDRNKPGKFEDFYKLLEHLHH 36 (80)
T ss_pred CeEEEEEeccccCcCHHHHHHHHHHHhC
Confidence 3466676676667899999999998854
No 274
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=21.39 E-value=50 Score=16.87 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=16.0
Q ss_pred hhhhhhccCCCCcccHHHHHHH
Q psy15327 40 WAFSMYDLDGNGYISRNEMLEI 61 (127)
Q Consensus 40 ~~f~~~d~~~~g~i~~~ef~~~ 61 (127)
.+...++.+++|.|+...+..+
T Consensus 19 fL~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 19 FLRSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHHHhcCCCcEeHHHHHch
Confidence 3456677888999998876654
No 275
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=20.19 E-value=70 Score=19.66 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=8.8
Q ss_pred CCceeHHHHHHHHH
Q psy15327 14 DGTIDFREFLCALS 27 (127)
Q Consensus 14 ~g~i~~~ef~~~l~ 27 (127)
+|.||.+||+.+=-
T Consensus 25 tG~iTPeEFV~AGD 38 (145)
T PF03986_consen 25 TGVITPEEFVAAGD 38 (145)
T ss_dssp HS---HHHHHHHHH
T ss_pred cceeCHHHHHHhhh
Confidence 59999999998843
No 276
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.03 E-value=1.8e+02 Score=16.11 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=37.0
Q ss_pred CCcccHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHHHHHhcCcCCCCcccHHHHHHHHhc--ChhHHHHhhc
Q psy15327 50 NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS--DPSIVRLLQC 122 (127)
Q Consensus 50 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~is~~ef~~~l~~--~~~~~~~~~~ 122 (127)
.|.+|.++...+-. .+...+.+..++..+- .-|.-.|..|+.++.. .|.+..+++.
T Consensus 32 ~gvlt~~~~~~I~~---------------~~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~~~~~~La~lL~~ 89 (90)
T cd08332 32 KDILTDSMAESIMA---------------KPTSFSQNVALLNLLP--KRGPRAFSAFCEALRETSQEHLCDLLEK 89 (90)
T ss_pred cCCCCHHHHHHHHc---------------CCCcHHHHHHHHHHHH--HhChhHHHHHHHHHHhcChHHHHHHHhh
Confidence 46778776554443 2455667777777663 3566788999999975 4566666653
Done!