RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15327
(127 letters)
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 175 bits (445), Expect = 2e-57
Identities = 112/126 (88%), Positives = 120/126 (95%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
FAEHVFRTFDANGDGTIDFREF+ ALSVTSRGKLEQKL+WAFSMYDLDGNGYIS+ EMLE
Sbjct: 64 FAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLE 123
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
IVQAIYKMV +VMKMPEDESTPEKRT+KIFRQMD N+DG+LSLEEFI GAKSDPSIVRLL
Sbjct: 124 IVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL 183
Query: 121 QCDPQN 126
QCDP +
Sbjct: 184 QCDPSS 189
Score = 36.7 bits (85), Expect = 6e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ W +G++S E +I + K + +FR D
Sbjct: 25 HEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFF-----------PYGDASKFAEHVFRTFD 73
Query: 95 KNQDGRLSLEEFIEG 109
N DG + EFI
Sbjct: 74 ANGDGTIDFREFIIA 88
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 174 bits (443), Expect = 6e-57
Identities = 61/130 (46%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ E +FR FD NGD TIDF E++ AL++ RG LE KL+W F +YD D NG I R E+L+
Sbjct: 60 YVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLD 119
Query: 61 IVQAIYKMVGTVMKMPEDES-----TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPS 115
IV++IYK+ E E TPE+ D+IF +D+N DG+LSL EF+EGA+ D
Sbjct: 120 IVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKW 179
Query: 116 IVRLLQCDPQ 125
++++LQ D
Sbjct: 180 VMKMLQMDLN 189
Score = 47.1 bits (112), Expect = 1e-07
Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 13/122 (10%)
Query: 6 FRTF-DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
++ F + GT+ EF V + Q + F +D +G+ I E +
Sbjct: 28 YKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYV----- 82
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDP 124
+ + T E + F+ DK+++G + +E ++ +S + + +
Sbjct: 83 ----AALNLVLR---GTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEV 135
Query: 125 QN 126
+
Sbjct: 136 EA 137
Score = 35.9 bits (83), Expect = 0.001
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 21 EFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDES 80
E A+ +L Q+ F + +G + +E +K+
Sbjct: 11 EENGAVGAADAAQL-QEWYKKF--LEECPSGTLFMHEFKR----FFKVPDN--------E 55
Query: 81 TPEKRTDKIFRQMDKNQDGRLSLEEFIEG 109
+ + +FR D N D + E++
Sbjct: 56 EATQYVEAMFRAFDTNGDNTIDFLEYVAA 84
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 169 bits (429), Expect = 1e-54
Identities = 46/121 (38%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ V+ TFD N DG +DF EF+ A+++ + K+EQKL+W F +YD DGNG I +NE+L+
Sbjct: 58 HIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLD 117
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
+ A+ + G + +PE+ + +F ++D N DG L+LEEFI G D ++ ++
Sbjct: 118 MFMAVQALNG------QQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIV 171
Query: 121 Q 121
Sbjct: 172 Y 172
Score = 37.1 bits (86), Expect = 5e-04
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 46 DLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
+G + +E + + + G K D+++ D N+DG + E
Sbjct: 30 MEYPSGLQTLHEF----KTLLGLQG-------LNQKANKHIDQVYNTFDTNKDGFVDFLE 78
Query: 106 FIEG 109
FI
Sbjct: 79 FIAA 82
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 165 bits (420), Expect = 1e-53
Identities = 81/121 (66%), Positives = 99/121 (81%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
FAE+VF FDA+ +G IDF+EF+CALSVTSRG+L KL WAF +YDLD NG IS +EML
Sbjct: 64 FAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLR 123
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
IV AIYKMVG+++K+PEDE TPEKR +KIF MDKN+DG+L+LEEF EG+K DP+IV L
Sbjct: 124 IVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSAL 183
Query: 121 Q 121
Sbjct: 184 S 184
Score = 32.5 bits (74), Expect = 0.018
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
++ +W + +G+++++E +I + + P + +F D
Sbjct: 25 KELQQWYKGFFKDCPSGHLNKSEFQKIYKQFF-----------PFGDPSAFAEYVFNVFD 73
Query: 95 KNQDGRLSLEEFIEG 109
+++G + +EFI
Sbjct: 74 ADKNGYIDFKEFICA 88
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 166 bits (423), Expect = 1e-53
Identities = 47/124 (37%), Positives = 82/124 (66%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+A +F FD + +G + F +F+ LS+ RG +++KL WAF++YD++ +GYI++ EML+
Sbjct: 103 YAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLD 162
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
I++AIY M+G E P + + F++MDKN+DG ++++EFIE + D +I+R +
Sbjct: 163 IMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSM 222
Query: 121 QCDP 124
Q
Sbjct: 223 QLFE 226
Score = 37.6 bits (87), Expect = 4e-04
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
Q L F + +G ++ EI + + +F D
Sbjct: 67 QILYRGF--KNECPSGVVNEETFKEIYSQFF-----------PQGDSTTYAHFLFNAFDT 113
Query: 96 NQDGRLSLEEFIEG 109
+ +G +S E+FI+G
Sbjct: 114 DHNGAVSFEDFIKG 127
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 163 bits (413), Expect = 2e-52
Identities = 78/121 (64%), Positives = 99/121 (81%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
FA VF FD N DG I+F EF+ ALSVTSRG L++KLRWAF +YDLD +GYI+RNEML+
Sbjct: 64 FATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLD 123
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
IV AIY+MVG +++PE+E+TPEKR D+IF MDKN DG+L+L+EF EG+K+DPSIV+ L
Sbjct: 124 IVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQAL 183
Query: 121 Q 121
Sbjct: 184 S 184
Score = 33.7 bits (77), Expect = 0.007
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
Q+ F +G + +I + + P K +F D+
Sbjct: 28 QQWYKGF--IKDCPSGQLDAAGFQKIYKQFFPFG-----------DPTKFATFVFNVFDE 74
Query: 96 NQDGRLSLEEFIEG 109
N+DGR+ EFI+
Sbjct: 75 NKDGRIEFSEFIQA 88
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 163 bits (413), Expect = 2e-52
Identities = 54/121 (44%), Positives = 79/121 (65%), Gaps = 5/121 (4%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ E +F TFD N DG IDF E++ ALS+ +GK++QKLRW F +YD+DGNG I R E+L
Sbjct: 53 YVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLN 112
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
I++AI + + T E+ T+ +F ++D N DG LSLEEF+EG + D ++ +L
Sbjct: 113 IIKAIRA-----INRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDIL 167
Query: 121 Q 121
Sbjct: 168 T 168
Score = 41.3 bits (97), Expect = 2e-05
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+ F +G ++ E + + + K +++F D
Sbjct: 17 HQWYKKF--MTECPSGQLTLYEFKQF-----------FGLKNLSPSANKYVEQMFETFDF 63
Query: 96 NQDGRLSLEEFIEG 109
N+DG + E++
Sbjct: 64 NKDGYIDFMEYVAA 77
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 162 bits (412), Expect = 3e-52
Identities = 70/128 (54%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+A+HVFR+FD+N DGT+DF+E++ AL +T+ GK QKL WAFS+YD+DGNG IS+NE+LE
Sbjct: 72 YAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLE 131
Query: 61 IVQAIYKMVG--TVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVR 118
IV AI+KM+ V +P+DE+TPEKR +KI++ KN D +L+ +EFIEG ++ I+R
Sbjct: 132 IVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILR 191
Query: 119 LLQCDPQN 126
L+Q +PQ
Sbjct: 192 LIQFEPQK 199
Score = 33.0 bits (75), Expect = 0.012
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
E+ W S G I++ + I + ++ P+ +FR D
Sbjct: 33 EELCSWYQSFLKDCPTGRITQQQFQSIYAKFF-----------PDTDPKAYAQHVFRSFD 81
Query: 95 KNQDGRLSLEEFIEG 109
N DG L +E++
Sbjct: 82 SNLDGTLDFKEYVIA 96
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 161 bits (410), Expect = 4e-52
Identities = 51/123 (41%), Positives = 83/123 (67%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+A ++F FD G++ F +F+ ALS+ RG + +KLRW F++YD++ +GYI++ EM++
Sbjct: 57 YAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMD 116
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
IV+AIY M+G E TP + D F++MDKN+DG ++L+EF+E + D +I+R L
Sbjct: 117 IVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSL 176
Query: 121 QCD 123
Q
Sbjct: 177 QLF 179
Score = 35.2 bits (81), Expect = 0.002
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 13/74 (17%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
Q L F + +G ++ +I + +F D
Sbjct: 21 QVLYRGF--KNEXPSGVVNEETFKQIYAQFF-----------PHGDASTYAHYLFNAFDT 67
Query: 96 NQDGRLSLEEFIEG 109
Q G + E+F+
Sbjct: 68 TQTGSVKFEDFVTA 81
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 160 bits (406), Expect = 4e-51
Identities = 51/124 (41%), Positives = 83/124 (66%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+A ++F FD G++ F +F+ ALS+ RG + +KLRW F++YD++ +GYI++ EM++
Sbjct: 90 YAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMD 149
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
IV+AIY M+G E TP + D F++MDKN+DG ++L+EF+E + D +I+R L
Sbjct: 150 IVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSL 209
Query: 121 QCDP 124
Q
Sbjct: 210 QLFQ 213
Score = 32.6 bits (74), Expect = 0.020
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 13/74 (17%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
Q L F + +G ++ +I + +F D
Sbjct: 54 QVLYRGF--KNECPSGVVNEETFKQIYAQFF-----------PHGDASTYAHYLFNAFDT 100
Query: 96 NQDGRLSLEEFIEG 109
Q G + E+F+
Sbjct: 101 TQTGSVKFEDFVTA 114
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 158 bits (401), Expect = 2e-50
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSV-TSRGKLEQKLRWAFSMYDLDGNGYISRNEML 59
FA+ +F FD +G I+F EF+ +L V + +K+++AF +YDL G+I R E+
Sbjct: 75 FADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELK 134
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRL 119
E+V A+ + E E DK F Q D+ DG++ ++E+ + +PS+++
Sbjct: 135 EMVVALLHESE----LVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIKN 190
Query: 120 LQ 121
+
Sbjct: 191 MT 192
Score = 34.8 bits (80), Expect = 0.003
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 36 QKLRWAFSMYD--LDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93
+ L F + +G I + E + + D+IF
Sbjct: 37 EALYELFKKLSSSIIDDGLIHKEEFQLA-----------LFRNRNRRNLF--ADRIFDVF 83
Query: 94 DKNQDGRLSLEEFIEG 109
D ++G + EF+
Sbjct: 84 DVKRNGVIEFGEFVRS 99
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 155 bits (393), Expect = 1e-49
Identities = 66/121 (54%), Positives = 91/121 (75%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
FA H+F FD + +G I F EF+ LS TSRG LE+KL WAF +YDL+ +GYI+ +EML
Sbjct: 64 FANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLT 123
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
IV ++YKM+G+++ + EDE+TPE R KIF+ MDKN+DG ++L+EF EG+K DPSI+ L
Sbjct: 124 IVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGAL 183
Query: 121 Q 121
Sbjct: 184 N 184
Score = 30.2 bits (68), Expect = 0.10
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ +W +G ++R + ++I + + +PE + +F D
Sbjct: 25 REIQQWHKGFLRDCPSGQLAREDFVKIYKQFFP-----------FGSPEDFANHLFTVFD 73
Query: 95 KNQDGRLSLEEFIEG 109
K+ +G + EEFI
Sbjct: 74 KDNNGFIHFEEFITV 88
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 157 bits (397), Expect = 2e-49
Identities = 46/123 (37%), Positives = 82/123 (66%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+A +F FDA+G+G I F +F+ LS+ RG + +KL+WAF++YD++ +G I++ EML
Sbjct: 130 YAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLA 189
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 120
I+++IY M+G E P + ++ F++MD+NQDG ++++EF+E + D +I+ +
Sbjct: 190 IMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSM 249
Query: 121 QCD 123
Q
Sbjct: 250 QLF 252
Score = 32.7 bits (74), Expect = 0.021
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 13/74 (17%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
Q L F + G + + I + +F D
Sbjct: 94 QSLYRGF--KNECPTGLVDEDTFKLIYSQFFPQG-----------DATTYAHFLFNAFDA 140
Query: 96 NQDGRLSLEEFIEG 109
+ +G + E+F+ G
Sbjct: 141 DGNGAIHFEDFVVG 154
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 154 bits (392), Expect = 6e-49
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSV-TSRGKLEQKLRWAFSMYDLDGNGYISRNEML 59
FA+ VF FD +G + F EF ALSV ++ K+ ++F +YDL G+I R E+
Sbjct: 86 FADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVK 145
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRL 119
++V A G M ++ E DK F + D DG++ EE+ PS+++
Sbjct: 146 QMVVATLAESG----MNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKN 201
Query: 120 LQ 121
+
Sbjct: 202 MT 203
Score = 32.9 bits (75), Expect = 0.015
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 36 QKLRWAFSMYD--LDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93
+ L F + +G I++ E + + + D++F
Sbjct: 48 EALYELFKKISSAVIDDGLINKEEFQLA-----------LFKTNKKESLF--ADRVFDLF 94
Query: 94 DKNQDGRLSLEEFIEG 109
D +G L EEF
Sbjct: 95 DTKHNGILGFEEFARA 110
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 147 bits (372), Expect = 2e-46
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 1 FAEHVFRTFDAN-GDGTIDFREFLCALSVTS-RGKLEQKLRWAFSMYDLDGNGYISRNEM 58
F E + R F + ++ F +FL LSV S + K +AF ++D D +G ++R ++
Sbjct: 61 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 120
Query: 59 LEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVR 118
+V + G S ++ D I + D ++DG ++L EF P
Sbjct: 121 SRLVNC---LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFAS 177
Query: 119 LLQ 121
+
Sbjct: 178 SFK 180
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 137 bits (346), Expect = 4e-42
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 1 FAEHVFRTFDAN-GDGTIDFREFLCALSVTS-RGKLEQKLRWAFSMYDLDGNGYISRNEM 58
F E + R F + ++ F +FL LSV S + K +AF ++D D +G ++R ++
Sbjct: 92 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 151
Query: 59 LEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVR 118
+V + G S ++ D I + D ++DG ++L EF P
Sbjct: 152 SRLVNC---LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFAS 208
Query: 119 LLQ 121
+
Sbjct: 209 SFK 211
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 121 bits (304), Expect = 8e-36
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSV----------------TSRGKLEQKLRWAFSM 44
+ + F + G+ ++FR F+ L+ KL +AF +
Sbjct: 62 LGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRL 121
Query: 45 YDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLE 104
YDLD + ISR+E+L++++ + + + + D+ ++ D++ D +S
Sbjct: 122 YDLDKDDKISRDELLQVLRMMVGVNIS-------DEQLGSIADRTIQEADQDGDSAISFT 174
Query: 105 EFIEGAKSD 113
EF++ +
Sbjct: 175 EFVKVLEKV 183
Score = 45.1 bits (107), Expect = 8e-07
Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV--- 62
F + D +GT+ +F + L ++ + + +G ++ + +
Sbjct: 35 FTSLDKGENGTLSREDFQRIPELAIN-PLGDRI---INAFFSEGEDQVNFRGFMRTLAHF 90
Query: 63 -QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ PE ++ + FR D ++D ++S +E ++
Sbjct: 91 RPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQ 137
Score = 38.2 bits (89), Expect = 2e-04
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+L F+ D NG +SR + ++PE P D+I
Sbjct: 29 TRLYSRFTSLDKGENGTLSREDFQ--------------RIPELAINPLG--DRIINAFFS 72
Query: 96 NQDGRLSLEEFIEG 109
+ +++ F+
Sbjct: 73 EGEDQVNFRGFMRT 86
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 104 bits (262), Expect = 1e-29
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 24/125 (19%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSV-----------------TSRGKLEQKLRWAFS 43
+ + +F +G +DF F+ L+ KL +AF
Sbjct: 62 LGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQ 121
Query: 44 MYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSL 103
+YDLD +G ISR+EML++++ MVG +++ E++ E D+ ++ D++ DG +S
Sbjct: 122 LYDLDRDGKISRHEMLQVLRL---MVG--VQVTEEQ--LENIADRTVQEADEDGDGAVSF 174
Query: 104 EEFIE 108
EF +
Sbjct: 175 VEFTK 179
Score = 46.3 bits (110), Expect = 3e-07
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI--VQ 63
FR D N G + + ++ L ++ + DG+ + + +
Sbjct: 35 FRALDRNKKGYLSRMDLQQIGALAVN-PLGDRI---IESFFPDGSQRVDFPGFVRVLAHF 90
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKI---FRQMDKNQDGRLSLEEF 106
+ T + P+ R +K+ F+ D ++DG++S E
Sbjct: 91 RPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEM 136
Score = 40.9 bits (96), Expect = 2e-05
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+L F D + GY+SR + + ++ P D+I
Sbjct: 29 LRLHHRFRALDRNKKGYLSRMD--------------LQQIGALAVNPLG--DRIIESFFP 72
Query: 96 NQDGRLSLEEFIEG 109
+ R+ F+
Sbjct: 73 DGSQRVDFPGFVRV 86
Score = 37.4 bits (87), Expect = 4e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKL-----EQKLRWAFSMYDLDGNGYISRNEMLE 60
F+ +D + DG I E L L + ++ E D DG+G +S E +
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Query: 61 IVQ 63
++
Sbjct: 180 SLE 182
Score = 30.5 bits (69), Expect = 0.095
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKL 38
A+ + D +GDG + F EF +L + +EQK+
Sbjct: 157 ADRTVQEADEDGDGAVSFVEFTKSL---EKMDVEQKM 190
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 99.6 bits (249), Expect = 5e-28
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTS-RGKLEQKLRWAFSMYDLDGNGYISRNEML 59
+ V FD +G+G +DF+EF+ +S S +G EQKLR+AF +YD+D +GYIS E+
Sbjct: 39 LVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELF 98
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
++++ MVG + + + ++ DK DK+ DGR+S EEF
Sbjct: 99 QVLKM---MVG--NNLKDTQL--QQIVDKTIINADKDGDGRISFEEFCA 140
Score = 36.8 bits (86), Expect = 4e-04
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
++L F DLD +G +S E M +PE + P ++ D
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEE--------------FMSLPELQQNPLV--QRVIDIFDT 49
Query: 96 NQDGRLSLEEFI 107
+ +G + +EFI
Sbjct: 50 DGNGEVDFKEFI 61
Score = 34.9 bits (81), Expect = 0.002
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKL-----EQKLRWAFSMYDLDGNGYISRNEMLE 60
FR +D + DG I E L + L +Q + D DG+G IS E
Sbjct: 81 FRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCA 140
Query: 61 IVQ 63
+V
Sbjct: 141 VVG 143
Score = 28.0 bits (63), Expect = 0.57
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKL 38
+ D +GDG I F EF + + +K+
Sbjct: 118 VDKTIINADKDGDGRISFEEFCAVV---GGLDIHKKM 151
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 88.2 bits (218), Expect = 1e-22
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+ +D G I F + + LE K R+ F G+ + + ++
Sbjct: 137 LLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHD 195
Query: 65 IYKMVGTVMKMPE-DESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 121
++ + ++ S E F+ N + F++ + +P + L
Sbjct: 196 SIQIPRQLGEVASFGGSNIEPSVRSCFQFA--NNKPEIEAALFLDWMRLEPQSMVWLP 251
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 85.5 bits (212), Expect = 7e-21
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ + D +G G+I++ EF+ + + +++ AF M+D DG+G IS E+ ++
Sbjct: 383 IDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKL 442
Query: 62 VQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
D S + + I Q+D N+DG + EF+E
Sbjct: 443 FSQ------------ADSSIQMEELESIIEQVDNNKDGEVDFNEFVE 477
Score = 52.8 bits (127), Expect = 2e-09
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIY--KMVGTVMKMPEDESTPEKRTDKIFRQM 93
++L F D + +G + R+E++ K V + + + ST E + D + +
Sbjct: 331 KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLL 390
Query: 94 DKNQDGRLSLEEFIEGA 110
D + G + EFI A
Sbjct: 391 DMDGSGSIEYSEFIASA 407
Score = 42.7 bits (101), Expect = 6e-06
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 26/118 (22%)
Query: 5 VFRTFDANGDGTIDFREFLCALS--------------VTSRGKLEQKLRWAFSMYDLDGN 50
+FR D N DG +D E + +E ++ + D+DG+
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS 395
Query: 51 GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G I +E + ++ +R ++ F+ DK+ G++S +E +
Sbjct: 396 GSIEYSEFIASAIDRTILLS------------RERMERAFKMFDKDGSGKISTKELFK 441
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 85.5 bits (212), Expect = 7e-21
Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+++ + D + +G I++ EF+ E++LR AF+++D D +G I++ E+ +
Sbjct: 401 VDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANL 460
Query: 62 VQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
S EK + + + D+N+D + +EF+
Sbjct: 461 F--------------GLTSISEKTWNDVLGEADQNKDNMIDFDEFVS 493
Score = 54.3 bits (131), Expect = 6e-10
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
++L F D +G+G + + E++E Y ++ + E+ D I +++D
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKELIEG----YNVLRNFKNELGELKNVEEEVDNILKEVDF 410
Query: 96 NQDGRLSLEEFIEGA 110
+++G + EFI
Sbjct: 411 DKNGYIEYSEFISVC 425
Score = 47.8 bits (114), Expect = 1e-07
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 5 VFRTFDANGDGTIDFREFLCAL--------SVTSRGKLEQKLRWAFSMYDLDGNGYISRN 56
+F+ D NGDG +D +E + + +E+++ D D NGYI +
Sbjct: 360 IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYS 419
Query: 57 EMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
E + + + E+R + F D ++ G+++ EE
Sbjct: 420 EFISVCMDKQILFS------------EERLRRAFNLFDTDKSGKITKEELAN 459
Score = 30.8 bits (70), Expect = 0.10
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 1 FAEHVFRTFDANGDGTIDFREF 22
V D N D IDF EF
Sbjct: 470 TWNDVLGEADQNKDNMIDFDEF 491
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 85.1 bits (211), Expect = 1e-20
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRW--AFSMYDLDGNGYISRNEML 59
+ + D + +G ID+ EF+ R L K + AF +D DGNG IS +E+
Sbjct: 392 VDAILGAADFDRNGYIDYSEFVTVAM--DRKSLLSKDKLESAFQKFDQDGNGKISVDELA 449
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + K ++ +D N DG + EEF +
Sbjct: 450 SVF--------------GLDHLESKTWKEMISGIDSNNDGDVDFEEFCK 484
Score = 53.9 bits (130), Expect = 9e-10
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
++L F D +G+G + R E+++ Y + D E D I D
Sbjct: 346 KELTDIFRHIDKNGDGQLDRQELIDG----YSKLSGEEVAVFDLPQIESEVDAILGAADF 401
Query: 96 NQDGRLSLEEFIEGA 110
+++G + EF+ A
Sbjct: 402 DRNGYIDYSEFVTVA 416
Score = 46.6 bits (111), Expect = 3e-07
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 5 VFRTFDANGDGTIDFREFLCAL--------SVTSRGKLEQKLRWAFSMYDLDGNGYISRN 56
+FR D NGDG +D +E + +V ++E ++ D D NGYI +
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYS 410
Query: 57 EMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
E + + ++ + + + F++ D++ +G++S++E
Sbjct: 411 EFVTVAMDRKSLLS------------KDKLESAFQKFDQDGNGKISVDELAS 450
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 84.4 bits (209), Expect = 2e-20
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 14/107 (13%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ V D + +G I++ EF+ ++L AF M+D D +G IS E+ I
Sbjct: 384 VDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATI 443
Query: 62 VQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + ++DKN DG + +EF +
Sbjct: 444 F--------------GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQ 476
Score = 52.8 bits (127), Expect = 2e-09
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
++L F D +G+G + R E++E + + +M G D S E D++ +D
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDAS-MLDASAVEHEVDQVLDAVDF 393
Query: 96 NQDGRLSLEEFIEGA 110
+++G + EF+ A
Sbjct: 394 DKNGYIEYSEFVTVA 408
Score = 45.5 bits (108), Expect = 8e-07
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 23/115 (20%)
Query: 5 VFRTFDANGDGTIDFREFLCAL-----------SVTSRGKLEQKLRWAFSMYDLDGNGYI 53
+F D NGDG +D E + S+ +E ++ D D NGYI
Sbjct: 340 IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYI 399
Query: 54 SRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+E + + ++ +R ++ FR D + G++S E
Sbjct: 400 EYSEFVTVAMDRKTLLS------------RERLERAFRMFDSDNSGKISSTELAT 442
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 79.2 bits (196), Expect = 8e-20
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
+ + D++G G ID+ EF+ A ++ + ++ + AF ++D+D +G I+ E+ I
Sbjct: 90 DLLLDQIDSDGSGKIDYTEFI-AAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHI- 147
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ K + + ++ R +DKN DG++ EF E
Sbjct: 148 -----LYNGNKKGNITQRDVNR-VKRMIRDVDKNNDGKIDFHEFSE 187
Score = 50.7 bits (122), Expect = 6e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
F D +G G I + L KL D DG+G I E +
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLE-KDGLKLPYNFDLLLDQIDSDGSGKIDYTEFI----- 110
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ S +K FR D + DG ++ E
Sbjct: 111 ------AAALDRKQLS--KKLIYCAFRVFDVDNDGEITTAEL 144
Score = 44.2 bits (105), Expect = 1e-06
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+KL+ F + D DG GYI++ ++ ++ D D + Q+D
Sbjct: 52 EKLKSTFLVLDEDGKGYITKEQL-----------KKGLEK--DGLKLPYNFDLLLDQIDS 98
Query: 96 NQDGRLSLEEFI 107
+ G++ EFI
Sbjct: 99 DGSGKIDYTEFI 110
Score = 32.6 bits (75), Expect = 0.015
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 6 FRTFDANGDGTIDFREFLCALS-----VTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
FR FD + DG I E L + +++ D + +G I +E E
Sbjct: 128 FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
Query: 61 IVQ 63
+++
Sbjct: 188 MMK 190
Score = 31.8 bits (73), Expect = 0.032
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
F +D++ G ++ E+ +G +
Sbjct: 56 STFLVLDEDGKGYITKEQLKKGLEK 80
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 78.1 bits (192), Expect = 1e-19
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 19 FREFLCALSVTSRGKL--EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76
E L + ++ ++ F M+D DGN + E+ + ++K G+
Sbjct: 49 IMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPL 108
Query: 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 111
E D + R DKN DG + EF + +
Sbjct: 109 MSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSLQ 143
Score = 31.5 bits (71), Expect = 0.041
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCAL 26
+ V R D N DG ID+ EF +L
Sbjct: 118 IDGVLRDDDKNNDGYIDYAEFAKSL 142
Score = 28.4 bits (63), Expect = 0.47
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 57 EMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + I + + V+ PE E +P++ F+ D + + L E
Sbjct: 41 NTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELST 92
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 77.7 bits (192), Expect = 4e-19
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
D + +G I++ EF+ ++L AF +D DG+G I+ E+ +
Sbjct: 97 DFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEEL--------GRL 148
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
V ++ ++ ++ ++ DKN DG + EEF+E
Sbjct: 149 FGVTEVDDET------WHQVLQECDKNNDGEVDFEEFVE 181
Score = 52.3 bits (126), Expect = 1e-09
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
++L F D +G+G + R E++E + + + G + D S E D I + +D
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSD-LDSSQIEAEVDHILQSVDF 98
Query: 96 NQDGRLSLEEFIE 108
+++G + EF+
Sbjct: 99 DRNGYIEYSEFVT 111
Score = 48.8 bits (117), Expect = 3e-08
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKL-----------EQKLRWAFSMYDLDGNGYI 53
+FR D NGDG +D +E + + K E ++ D D NGYI
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYI 104
Query: 54 SRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+E + + + K +R F+Q D + G+++ EE
Sbjct: 105 EYSEFVTV---------CMDKQLLLS---RERLLAAFQQFDSDGSGKITNEEL 145
Score = 33.4 bits (77), Expect = 0.010
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 67 KMVGTVM--KMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEG 109
+ M K+ E T E +IFRQ+D N DG+L +E IEG
Sbjct: 23 QAAMLFMGSKLTTLEETKELT--QIFRQLDNNGDGQLDRKELIEG 65
Score = 29.2 bits (66), Expect = 0.29
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
V + D N DG +DF EF+
Sbjct: 160 HQVLQECDKNNDGEVDFEEFV 180
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 78.0 bits (192), Expect = 5e-19
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
F + G+ DF EFL + +L F D GN + E
Sbjct: 95 FDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKR 154
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ E + +F+++DKN G ++ +EF
Sbjct: 155 -----------AVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAA 191
Score = 45.7 bits (108), Expect = 5e-07
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 22/112 (19%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVT-----SRGKLEQKLRWAFSM-----YDLDGNGYIS 54
+F+ FD N G + + E ++ + AF L+ G
Sbjct: 53 LFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED 112
Query: 55 RNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
E LE + + +F ++D + + + EEF
Sbjct: 113 FVEFLEFRLMLCYIYD------------FFELTVMFDEIDASGNMLVDEEEF 152
Score = 40.3 bits (94), Expect = 4e-05
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 25 ALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEK 84
A+ + +Q+ F +D + G + +E+ + K+ ++ +
Sbjct: 37 AIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITK--RA 94
Query: 85 RTDKIFRQMDKNQDGRLSLEEFIE 108
G EF+E
Sbjct: 95 FDKSRTLGSKLENKGSEDFVEFLE 118
Score = 32.2 bits (73), Expect = 0.032
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 74 KMPEDESTPEK-RTDKIFRQMDKNQDGRLSLEEFIEG 109
+P +++ K R ++F++ DKN+ G+L +E G
Sbjct: 37 AIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSG 73
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 73.4 bits (181), Expect = 9e-19
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
E +F+ D NGDG + + E +S K EQ L+ F D DGNG I +NE +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 63 QAI 65
+I
Sbjct: 63 GSI 65
Score = 34.8 bits (81), Expect = 7e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 87 DKIFRQMDKNQDGRLSLEEFIEGAKS 112
+ +F+++D N DG +S EE
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSK 28
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 76.1 bits (188), Expect = 1e-18
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
D+N G I + +FL A ++ F +D+DGNG IS E+ I
Sbjct: 103 DSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRI------FG 156
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + +K D + +++D N DG + EF+
Sbjct: 157 RDDI----ENPLIDKAIDSLLQEVDLNGDGEIDFHEFML 191
Score = 50.7 bits (122), Expect = 6e-09
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
F D + GT+ +E L L K+ + D + +G I + L
Sbjct: 63 FIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAA---- 118
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
T+ K + ++ F+ D + +G++S+EE
Sbjct: 119 -----TIDKQTYLK---KEVCLIPFKFFDIDGNGKISVEEL 151
Score = 40.7 bits (96), Expect = 3e-05
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
LR F D+D +G +S E+ +K + ++ R +D
Sbjct: 57 NNLRNIFIALDVDNSGTLSSQEI-----------LDGLKKIGYQKI-PPDIHQVLRDIDS 104
Query: 96 NQDGRLSLEEFIE 108
N G++ +F+
Sbjct: 105 NASGQIHYTDFLA 117
Score = 33.3 bits (77), Expect = 0.011
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKL--EQKLRWAFSMYDLDGNGYISRNEMLEI 61
F+ FD +G+G I E ++ + DL+G+G I +E + +
Sbjct: 135 FKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
Score = 31.0 bits (71), Expect = 0.067
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEG 109
IF +D + G LS +E ++G
Sbjct: 61 NIFIALDVDNSGTLSSQEILDG 82
Score = 29.9 bits (68), Expect = 0.18
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ + + D NGDG IDF EF+
Sbjct: 170 DSLLQEVDLNGDGEIDFHEFM 190
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 74.1 bits (183), Expect = 2e-18
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKL---EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
DA+G+G ID EF L + L+ + + D+DG+G +++ E+ +
Sbjct: 46 DADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFK--- 102
Query: 67 KMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
K ++ + + D N DG ++LEEF+E
Sbjct: 103 -------KHGIEK------VAEQVMKADANGDGYITLEEFLE 131
Score = 56.0 bits (136), Expect = 2e-11
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+F+ D NGDG + + E +S K EQ L+ F D DGNG I +NE + +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
+D S + +++ MD + DG+L+ EE
Sbjct: 65 ---------IQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEE 96
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 38 LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQ 97
F D++G+G +S E+ +A E IF+ +D +
Sbjct: 2 AEALFKEIDVNGDGAVSYEEV----KAFVSKKR--AIKNEQL------LQLIFKSIDADG 49
Query: 98 DGRLSLEEFIE 108
+G + EF +
Sbjct: 50 NGEIDQNEFAK 60
Score = 30.2 bits (69), Expect = 0.10
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
+F+++D N DG +S EE
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSK 28
Score = 28.3 bits (64), Expect = 0.37
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
DANGDG I EFL
Sbjct: 110 AEQVMKADANGDGYITLEEFL 130
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 74.8 bits (184), Expect = 4e-18
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGK--------LEQKLRWAFSMYDLDGNGY 52
+++ + DG++ +F+ + L ++ M D + +G
Sbjct: 59 LFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQ 118
Query: 53 ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
I+ +E + T + M + E+ + F Q+D N +G LSL+E +
Sbjct: 119 INADE--------FAAWLTALGMSKAEA------AEAFNQVDTNGNGELSLDELLT 160
Score = 60.9 bits (148), Expect = 7e-13
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 25/122 (20%)
Query: 3 EHVFRTFDANGDGTIDFREFLC-------ALSVTSRGKLEQKLRWAFSMY--------DL 47
+ F +D +G+G ++ +F A + Q L+ AF +
Sbjct: 10 KKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGV 69
Query: 48 DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKI---FRQMDKNQDGRLSLE 104
+G ++ + + + ++ + S + DKN DG+++ +
Sbjct: 70 GSDGSLTEEQFIR-------VTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
Query: 105 EF 106
EF
Sbjct: 123 EF 124
Score = 59.4 bits (144), Expect = 3e-12
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDE---STPEKRTDKIFR 91
+L+ F +D DGNG + R + + Q I + G E + + D + +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 92 QMDKNQDGRLSLEEFIEGAKS 112
+ DG L+ E+FI ++
Sbjct: 66 EAGVGSDGSLTEEQFIRVTEN 86
Score = 45.1 bits (107), Expect = 5e-07
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ + D N DG I+ EF L T+ G + + AF+ D +GNG +S +E+L
Sbjct: 103 VVKGIVGMCDKNADGQINADEFAAWL--TALGMSKAEAAEAFNQVDTNGNGELSLDELLT 160
Query: 61 IVQAIY 66
V+ +
Sbjct: 161 AVRDFH 166
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 73.6 bits (181), Expect = 7e-18
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGK-------LEQKLRWAFSMYDLDGNGYISR 55
+ + D +GD I EF+ R K L A + D DG+G ++
Sbjct: 58 QGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTV 117
Query: 56 NEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ T +PED + + +D + DG++ E +
Sbjct: 118 AD--------TARALTAFGVPEDLA------RQAAAALDTDGDGKVGETEIVP 156
Score = 61.7 bits (150), Expect = 3e-13
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 20/119 (16%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL---------------SVTSRGKLEQKLRWAFSMYDL 47
F TFD +G+G ID +F A G E + + D
Sbjct: 7 AARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADR 66
Query: 48 DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
DG+ I+R E + + K D + DG +++ +
Sbjct: 67 DGDQRITREEFVTGAVKRLR-----DKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Score = 58.2 bits (141), Expect = 7e-12
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDEST---PEKRTDKIFR 91
E+++ F+ +D DGNG+I R++ +A+ G + ++ E +
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 92 QMDKNQDGRLSLEEFIEGAK 111
D++ D R++ EEF+ GA
Sbjct: 63 IADRDGDQRITREEFVTGAV 82
Score = 46.3 bits (110), Expect = 2e-07
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
F D +GDG + + AL T+ G E R A + D DG+G + E++
Sbjct: 99 FLHAALGVADTDGDGAVTVADTARAL--TAFGVPEDLARQAAAALDTDGDGKVGETEIVP 156
Query: 61 IVQA 64
Sbjct: 157 AFAR 160
Score = 30.9 bits (70), Expect = 0.063
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 83 EKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
E+R F D++ +G + +F AK+
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKA 32
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 71.5 bits (175), Expect = 1e-17
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 38 LRWAFSMYDLDGNGYISRNEMLEIV----QAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93
+ F ++D++ +G + E+ + + +Y M E E + + + + +
Sbjct: 22 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNV 81
Query: 94 DKNQDGRLSLEEFIEGAKSD 113
D NQD ++LEEF+ +
Sbjct: 82 DTNQDRLVTLEEFLASTQRK 101
Score = 31.8 bits (72), Expect = 0.015
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
EHV + D N D + EFL
Sbjct: 75 EHVMKNVDTNQDRLVTLEEFL 95
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 72.9 bits (180), Expect = 1e-17
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
D + GTID++EF+ A ++ + E L AF+ +D DG+GYI+ +E+ +
Sbjct: 73 DVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDEL--------QQA 124
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + +++ R +D++ DGR+ EF+
Sbjct: 125 CEEFGVEDVR------IEELMRDVDQDNDGRIDYNEFVA 157
Score = 48.7 bits (117), Expect = 2e-08
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+F DA+ G I F E L E ++ D+D +G I E +
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIA---- 87
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
+ ++ E F DK+ G ++ +E
Sbjct: 88 --------ATLHLNKIEREDHLFAAFTYFDKDGSGYITPDE 120
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
L+ F+M D D +G I+ E+ +K + E + + D
Sbjct: 27 AGLKEMFNMIDADKSGQITFEEL-----------KAGLKR-VGANLKESEILDLMQAADV 74
Query: 96 NQDGRLSLEEFIE 108
+ G + +EFI
Sbjct: 75 DNSGTIDYKEFIA 87
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 67 KMVGTVMKMPEDESTPEKRTD--KIFRQMDKNQDGRLSLEEFIEGAKS 112
KM V+ + + E+ ++F +D ++ G+++ EE G K
Sbjct: 11 KMALRVIA---ESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR 55
Score = 28.6 bits (65), Expect = 0.42
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
E + R D + DG ID+ EF+
Sbjct: 136 EELMRDVDQDNDGRIDYNEFV 156
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 75.6 bits (186), Expect = 1e-17
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
+ +FR D + + F E++ LR ++ D D +G +S+ E+ +
Sbjct: 226 DALFRYADEDESDDVGFSEYVHLG------LCLLVLRILYAFADFDKSGQLSKEEVQK-- 277
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
V++ + K+ + F +D + LS +EF+
Sbjct: 278 ---------VLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVM 314
Score = 71.4 bits (175), Expect = 4e-16
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 19/106 (17%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
+ +F + + G + + + L F D + NG +SR E E
Sbjct: 161 KKLFVMVENDTKGRMSYITLVAVA------NDLAALVADFRKIDTNSNGTLSRKEFREH- 213
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ D +FR D+++ + E++
Sbjct: 214 ------------FVRLGFDKKSVQDALFRYADEDESDDVGFSEYVH 247
Score = 56.4 bits (136), Expect = 1e-10
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+F + +G G F++ L+ + E L+ F M + D G +S ++ +
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAND 186
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
+ + FR++D N +G LS +EF E
Sbjct: 187 LAAL------------------VADFRKIDTNSNGTLSRKEFREHFVR 216
Score = 41.3 bits (97), Expect = 2e-05
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRG---KLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+D D RE +RG +Q+L + D +GY +
Sbjct: 56 KLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPSKPM 115
Query: 62 VQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEG 109
+ E+++ + ++F + G+ S ++ +
Sbjct: 116 -------------LSEEDTNILR---QLFLSSAVSGSGKFSFQDLKQV 147
Score = 38.3 bits (89), Expect = 3e-04
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNEMLEI 61
++ D + G + E L + +K FS+ D+D + +S E + +
Sbjct: 256 RILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVML 315
Query: 62 VQAIYK 67
V ++
Sbjct: 316 VLLMFH 321
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 73.3 bits (180), Expect = 2e-17
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 23/117 (19%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGK---------LEQKLRWAFSMYDLDGNG 51
+ + + D N D + E+L + + L + + + F + D G+
Sbjct: 65 IWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN 124
Query: 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
I ++E Y V +P+ + D F + ++ E F
Sbjct: 125 IIDKHE--------YSTVYMSYGIPKSDC------DAAFDTLSDGGKTMVTREIFAR 167
Score = 58.3 bits (141), Expect = 9e-12
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 19/120 (15%)
Query: 3 EHVFRT-FDANGDGTIDFREFLCAL-------SVTSRGKLEQKLRWAFSMY--------D 46
VF T +D N DG I++ +F A+ S + GK + R + D
Sbjct: 15 LRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYAD 74
Query: 47 LDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + +++ E L++ K V +PE K + +F D + D + E+
Sbjct: 75 ENEDEQVTKEEWLKMWAECVKSVEKGESLPE---WLTKYMNFMFDVNDTSGDNIIDKHEY 131
Score = 52.1 bits (125), Expect = 1e-09
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 35 EQKLRWAF-SMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPE---KRTDKIF 90
K+ F + YD + +G I ++ ++ I + + D +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 91 RQMDKNQDGRLSLEEFIEGAK 111
+ D+N+D +++ EE+++
Sbjct: 71 KYADENEDEQVTKEEWLKMWA 91
Score = 49.1 bits (117), Expect = 2e-08
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ +F D +GD ID E+ S G + AF G ++R
Sbjct: 110 YMNFMFDVNDTSGDNIIDKHEYSTVY--MSYGIPKSDCDAAFDTLSDGGKTMVTREIFAR 167
Query: 61 IVQAIYKMVGTVMKMPEDESTP 82
+ + + D
Sbjct: 168 LWTEYF--------VSNDRGAK 181
Score = 29.0 bits (65), Expect = 0.29
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 75 MPEDESTPE--KRTDKIFRQM-DKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 125
M + + + ++F D N DG + ++F K ++ +
Sbjct: 1 MAAHQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKK 54
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 72.8 bits (179), Expect = 2e-17
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 10 DANGDGTIDFREFLCALSVTSRG-----KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
G ID F+ ++ + +E L F D + + ISR+E
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDE------- 115
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
Y + ++ + + + F +D N DG LSLEEF+
Sbjct: 116 -YGIFFGMLGLDKTMA------PASFDAIDTNNDGLLSLEEFVI 152
Score = 65.9 bits (161), Expect = 8e-15
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 18/115 (15%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRG-----KLEQKLR------WAFSMYDLDGNG 51
+ F D + DG I +F ++ + + L W + + G
Sbjct: 9 KTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
I + + ++K PE +S E FR +D N+D +S +E+
Sbjct: 69 GIDETTFIN-------SMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEY 116
Score = 47.4 bits (113), Expect = 8e-08
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM- 93
QK++ F+ D D +G I+R + + + K E ++
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEM---KAEHAKVLMDSLTGVWDNFL 61
Query: 94 -DKNQDGRLSLEEFIEGAKS 112
+ FI K
Sbjct: 62 TAVAGGKGIDETTFINSMKE 81
Score = 46.3 bits (110), Expect = 2e-07
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
FR D N D I E+ + G + +F D + +G +S E +
Sbjct: 95 PLPLFFRAVDTNEDNNISRDEYGIFFGML--GLDKTMAPASFDAIDTNNDGLLSLEEFVI 152
Query: 61 IV 62
Sbjct: 153 AG 154
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 73.7 bits (181), Expect = 2e-17
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 25/117 (21%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLE-----------QKLRWAFSMYDLDGNG 51
F + +++ A V + + E + + D DG+G
Sbjct: 84 RVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDG 143
Query: 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ +E K + +P++ + F + D ++ G+L E +
Sbjct: 144 TVDVDE--------LKTMMKAFDVPQEAA------YTFFEKADTDKSGKLERTELVH 186
Score = 62.5 bits (152), Expect = 3e-13
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 10/113 (8%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL---------SVTSRGKLEQKLRWAFSMYDLDGNGYI 53
F TFD + DG ++ E L + K+ +R F ++ +
Sbjct: 39 YKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGL 98
Query: 54 SRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
R + +E + + + E + + +D + DG + ++E
Sbjct: 99 LREDWVEANRVFAEAERERERRGEPSLIALLS-NSYYDVLDDDGDGTVDVDEL 150
Score = 56.8 bits (137), Expect = 5e-11
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+L F +DLD +G + +E+L + ++V E F
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNA---TDEQVEKMRDAVRVFFLHKGV 92
Query: 96 NQDGRLSLEEFIEGAK 111
L E+++E +
Sbjct: 93 EPVNGLLREDWVEANR 108
Score = 46.0 bits (109), Expect = 4e-07
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ + D +GDGT+D E + + ++ F D D +G + R E++
Sbjct: 129 LSNSYYDVLDDDGDGTVDVDELKTMM--KAFDVPQEAAYTFFEKADTDKSGKLERTELVH 186
Query: 61 IVQAIY 66
+ + +
Sbjct: 187 LFRKFW 192
Score = 32.1 bits (73), Expect = 0.031
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 69 VGTVMKMPEDESTPEKRTD--KIFRQMDKNQDGRLSLEEFIEGAKS 112
VG + ++ P+ + K F D + DG++ ++E +
Sbjct: 19 VGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDR 64
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 73.1 bits (180), Expect = 3e-17
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
E V R +D NG GT+D EFL AL E + AF+ D G+G ++ +++
Sbjct: 76 EGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDL---- 131
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN-QDGRLSLEEFIE 108
+ +Y + E T ++ + D + +DG+++L EF +
Sbjct: 132 RGVYSGRAHPK-VRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQD 177
Score = 55.4 bits (134), Expect = 1e-10
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
FR D +G ++D EF L+ + + +D +G+G + E L
Sbjct: 42 FFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA--- 98
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
M + E F ++D++ DG +++++
Sbjct: 99 ------LRPPMSQA---REAVIAAAFAKLDRSGDGVVTVDDL 131
Score = 41.9 bits (99), Expect = 9e-06
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 25 ALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEK 84
LS + G L F D DG+ + +E + +G + + E
Sbjct: 28 CLSRGASGIQG--LARFFRQLDRDGSRSLDADEF----RQGLAKLGL--VLDQAE----- 74
Query: 85 RTDKIFRQMDKNQDGRLSLEEFIE 108
+ + R+ D+N G L LEEF+
Sbjct: 75 -AEGVCRKWDRNGSGTLDLEEFLR 97
Score = 32.3 bits (74), Expect = 0.022
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
+ FRQ+D++ L +EF +G
Sbjct: 41 RFFRQLDRDGSRSLDADEFRQGLAK 65
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 72.3 bits (178), Expect = 4e-17
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
D + GTID+ EF+ A ++ + E+ L AFS +D DG+GYI+ +E+ +
Sbjct: 56 DIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEI--------QQA 107
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + D + +++D++ DG++ EF
Sbjct: 108 CKDFGLDDIH------IDDMIKEIDQDNDGQIDYGEFAA 140
Score = 46.8 bits (112), Expect = 1e-07
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+F+ D + GTI F E L +E +++ D+D +G I E +
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA--- 71
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
+ + + E E+ F DK+ G ++L+E
Sbjct: 72 -------TVHLNKLER--EENLVSAFSYFDKDGSGYITLDE 103
Score = 42.2 bits (100), Expect = 6e-06
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 3 EHVFRTFDANGDGTIDFREFL--------CALSVTSRGKLEQKLRWAFSMYDLDGNGYIS 54
+ + + D + DG ID+ EF + LR A + D N I
Sbjct: 119 DDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIE 178
Query: 55 RNEMLE 60
Sbjct: 179 GYFKHH 184
Score = 37.6 bits (88), Expect = 3e-04
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
E+ L+ F M D D +G I+ +E+ +K E +
Sbjct: 7 EEIGGLKELFKMIDTDNSGTITFDEL-----------KDGLKR-VGSELMESEIKDLMDA 54
Query: 93 MDKNQDGRLSLEEFIE 108
D ++ G + EFI
Sbjct: 55 ADIDKSGTIDYGEFIA 70
Score = 26.8 bits (60), Expect = 1.9
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
++F+ +D + G ++ +E +G K
Sbjct: 14 ELFKMIDTDNSGTITFDELKDGLKR 38
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 70.3 bits (173), Expect = 4e-17
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
GT D++ F V +GK + +++ F + D D +G+I E L+ V +
Sbjct: 17 AFKDPGTFDYKRFFHL--VGLKGKTDAQVKEVFEILDKDQSGFIEEEE-LKGVLKGFSAH 73
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G + T + D + DG++ +EF +
Sbjct: 74 G--------RDLNDTETKALLAAGDSDHDGKIGADEFAK 104
Score = 30.2 bits (69), Expect = 0.070
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 5 VFRTFDANGDGTIDF---REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
VF D + G I+ + L S R + + + + D D +G I +E ++
Sbjct: 46 VFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
Query: 62 VQ 63
V
Sbjct: 106 VA 107
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 71.9 bits (177), Expect = 5e-17
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
+ + D N G I + EF+ A + L+ AF+ D D +GYIS+++++ +V
Sbjct: 76 NRILQALDINDRGNITYTEFM-AGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLV 134
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG--------RLSLEEFIE 108
D+ D F + + G ++S +EF +
Sbjct: 135 H--------------DKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKD 174
Score = 49.2 bits (118), Expect = 2e-08
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+F D N +G++ RE L+ S G + + D++ G I+ E +
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLA--SVGIKKWDINRILQALDINDRGNITYTEFMAG--- 98
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ F ++DK++DG +S +
Sbjct: 99 ------CYRWKNIE----STFLKAAFNKIDKDEDGYISKSDI 130
Score = 44.2 bits (105), Expect = 1e-06
Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 14/72 (19%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+ + F D + NG +S E+ ++ ++ + + + ++I + +D
Sbjct: 39 KYINELFYKLDTNHNGSLSHREIYTVLASV--------GIKKWD------INRILQALDI 84
Query: 96 NQDGRLSLEEFI 107
N G ++ EF+
Sbjct: 85 NDRGNITYTEFM 96
Score = 34.2 bits (79), Expect = 0.004
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
I ++ + + + ++F ++D N +G LS E S
Sbjct: 21 NIIINIMAHELSVINNHIKYIN---ELFYKLDTNHNGSLSHREIYTVLAS 67
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 69.6 bits (171), Expect = 8e-17
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
+ +++ F V K ++ AF + D D +G+I +E+ K+
Sbjct: 18 ACEAADSFNYKAFFAK--VGLTAKSADDIKKAFFVIDQDKSGFIEEDEL--------KLF 67
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
V T + T + D + DG + ++E+
Sbjct: 68 LQVFSAGARALT-DAETKAFLKAGDSDGDGAIGVDEWAA 105
Score = 32.2 bits (74), Expect = 0.015
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 5 VFRTFDANGDGTIDF---REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
F D + G I+ + FL S +R + + + D DG+G I +E +
Sbjct: 47 AFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
Query: 62 VQA 64
V+A
Sbjct: 107 VKA 109
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 71.3 bits (175), Expect = 8e-17
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALS-------VTSRGKLEQKLRWAFSMYDLDGNGYISR 55
V I E + + + + D D +GY+S
Sbjct: 62 LRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSL 121
Query: 56 NEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
E +A + VG + +D+ F +D N++G++S +EF+
Sbjct: 122 PEF----KAFLQAVG--PDLTDDK------AITCFNTLDFNKNGQISRDEFLV 162
Score = 60.9 bits (148), Expect = 7e-13
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRG---------KLEQKLRWAFSMYDLDGNGYI 53
+ + D GDG I ++ ++ + Q+ L I
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRI 76
Query: 54 SRNEMLEIVQAIYKMVGTVMKMPEDESTPEK-RTDKIFRQMDKNQDGRLSLEEF 106
S E +++KM +E ++ ++ +D ++DG +SL EF
Sbjct: 77 SVEEAAVN------ATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEF 124
Score = 54.4 bits (131), Expect = 2e-10
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 29 TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDK 88
+ R +K++ D+ G+G+ISR + I I K+ E + +
Sbjct: 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAK---LSAEKAEETRQEFLR 63
Query: 89 IFRQMDKNQDGRLSLEEFIEGA 110
+ Q+ R+S+EE A
Sbjct: 64 VADQLGLAPGVRISVEEAAVNA 85
Score = 50.9 bits (122), Expect = 4e-09
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ ++ D + DG + EF L + K F+ D + NG ISR+E L
Sbjct: 103 QSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLV 162
Query: 61 IVQAIYK 67
V
Sbjct: 163 TVNDFLF 169
Score = 33.6 bits (77), Expect = 0.008
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 75 MPE--DESTPEKRTD--KIFRQMDKNQDGRLSLEEFIEGAKS 112
MPE + +++D DG +S E++ A
Sbjct: 1 MPEITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVR 42
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 72.6 bits (178), Expect = 9e-17
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQK---------LRWAFSMYDLDGNGYISRNEML 59
+ DG I E L L + + YD D +G+I E+
Sbjct: 67 YGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEEL- 125
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
+ K + D++ + TD + + D N DG+L L E
Sbjct: 126 ---KNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMA 170
Score = 65.3 bits (159), Expect = 6e-14
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 15/112 (13%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL--------EQKLRWAFSMYDLDGNGYIS 54
+ + + FD+N DG ++ E L V L ++ AF +YD DGNGYI
Sbjct: 150 DLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYID 209
Query: 55 RNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
NE+ +++ + + E + M + G+L +
Sbjct: 210 ENELDALLKDLCEKNK-------QELDINNISTYKKNIMALSDGGKLYRTDL 254
Score = 56.8 bits (137), Expect = 6e-11
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 5 VFRTFDANGDGTIDFREF------LCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEM 58
++ FDA+G G ++ +E L + +L +++ Y +G I E+
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVEL 80
Query: 59 LEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
+ + ++ + + K +R+ D + G + EE K
Sbjct: 81 AHV---LPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKD 131
Score = 56.0 bits (135), Expect = 1e-10
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 5 VFRTFDANGDGTIDFREFLCALS--------VTSRGKLEQKLRWAFSMYDLDGNGYISRN 56
+R +D + G I+ E L KL + ++D + +G +
Sbjct: 108 TWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Query: 57 EMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
EM ++ + + K +K F D++ +G + E
Sbjct: 168 EMARLLPVQENFLLKFQGIKMC----GKEFNKAFELYDQDGNGYIDENEL 213
Score = 46.4 bits (110), Expect = 3e-07
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ + +D DG+GY+ E+ ++Q + + + Q
Sbjct: 15 ASQFFEIWLHFDADGSGYLEGKELQNLIQEL------LQARKKAGLELSPEMKTFVDQYG 68
Query: 95 KNQDGRLSLEEFIE 108
+ DG++ + E
Sbjct: 69 QRDDGKIGIVELAH 82
Score = 35.2 bits (81), Expect = 0.003
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALS-----VTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
F +D +G+G ID E L + + ++ L G + R +
Sbjct: 194 NKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTD 253
Query: 58 MLEIVQA 64
+ I+ A
Sbjct: 254 LALILSA 260
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 68.0 bits (167), Expect = 3e-16
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
+ + +EF V K ++ AF + D D +G+I +E+ +Q
Sbjct: 17 ACSAADSFKHKEFFAK--VGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNF---- 70
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
P + + T DK+ DG + ++EF
Sbjct: 71 -----SPSARALTDAETKAFLADGDKDGDGMIGVDEFAA 104
Score = 34.1 bits (79), Expect = 0.003
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 5 VFRTFDANGDGTIDF---REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
F D + G I+ + FL S ++R + + + + D DG+G I +E +
Sbjct: 46 AFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
Query: 62 VQA 64
++A
Sbjct: 106 IKA 108
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 69.1 bits (170), Expect = 3e-16
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Query: 10 DANGDGTIDFREFLCA----LSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
D +G GTIDF EFL + ++GK E++L F ++D + +G+I E+ EI
Sbjct: 66 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEI---- 121
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ T + E++ + + + DKN DGR+ +EF++
Sbjct: 122 --LRATGEHVTEED------IEDLMKDSDKNNDGRIDFDEFLK 156
Score = 39.9 bits (94), Expect = 3e-05
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
E + AF M+D DG G IS K +GTVM+M T ++ D I +
Sbjct: 17 EMIAEFKAAFDMFDADGGGDIS-----------TKELGTVMRMLGQNPT-KEELDAIIEE 64
Query: 93 MDKNQDGRLSLEEFIE 108
+D++ G + EEF+
Sbjct: 65 VDEDGSGTIDFEEFLV 80
Score = 29.5 bits (67), Expect = 0.20
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 7 RTFDANGDGTIDFREFL 23
+ D N DG IDF EFL
Sbjct: 139 KDSDKNNDGRIDFDEFL 155
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 67.6 bits (166), Expect = 5e-16
Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
+G+ + ++F V + ++ F D D +G+I E+ +++
Sbjct: 18 AVKAEGSFNHKKFFAL--VGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLK---SFA 72
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + E T + DK+ DG++ ++EF
Sbjct: 73 ADGRDLTDAE------TKAFLKAADKDGDGKIGIDEFET 105
Score = 32.9 bits (76), Expect = 0.007
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 5 VFRTFDANGDGTIDF---REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
VF+ DA+ G I+ + L + + R + + + D DG+G I +E +
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 106
Query: 62 VQ 63
V
Sbjct: 107 VH 108
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 67.3 bits (165), Expect = 7e-16
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
+ +++ F V K +++ F + D D +G+I E+ ++
Sbjct: 18 SCQAADSFNYKSFFST--VGLSSKTPDQIKKVFGILDQDKSGFIEEEEL--------QLF 67
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
T T D + DG++ +EEF
Sbjct: 68 LKNFSSSARVLT-SAETKAFLAAGDTDGDGKIGVEEFQS 105
Score = 34.2 bits (79), Expect = 0.002
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 5 VFRTFDANGDGTIDF---REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
VF D + G I+ + FL S ++R + + + D DG+G I E +
Sbjct: 47 VFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
Query: 62 VQA 64
V+A
Sbjct: 107 VKA 109
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 68.0 bits (167), Expect = 9e-16
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 16/103 (15%)
Query: 10 DANGDGTIDFREFLCA----LSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
D +G GT+DF EFL + S+GK E++L F M+D + +GYI E+ ++QA
Sbjct: 65 DEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT 124
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ ED+ +++ + DKN DGR+ +EF+E
Sbjct: 125 G------ETITEDD------IEELMKDGDKNNDGRIDYDEFLE 155
Score = 39.8 bits (94), Expect = 3e-05
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 5 VFRTFDANG-DGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
F F DG+I +E + + + ++L+ D DG+G + +E L ++
Sbjct: 23 AFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMV 82
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
K + + E+ +FR DKN DG + LEE ++
Sbjct: 83 RSMK--------DDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQA 123
Score = 35.2 bits (82), Expect = 0.002
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 35 EQK--LRWAFSMYDLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFR 91
EQK + AF ++ L G IS K +G VM+M T + ++
Sbjct: 15 EQKNEFKAAFDIFVLGAEDGSIS-----------TKELGKVMRMLGQNPT-PEELQEMID 62
Query: 92 QMDKNQDGRLSLEEFIE 108
++D++ G + +EF+
Sbjct: 63 EVDEDGSGTVDFDEFLV 79
Score = 29.4 bits (67), Expect = 0.19
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
FR FD N DG ID E L T E + D + +G I +E LE ++ +
Sbjct: 101 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGV 160
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 67.9 bits (167), Expect = 1e-15
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 10 DANGDGTIDFREFLCA-----LSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
+ N G +DF +F+ L+ T+ ++LR AF +D +G+G IS +E+ E
Sbjct: 57 NMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELRE---- 112
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
M+ + ++I R +D N DGR+ EEF+
Sbjct: 113 -------AMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVR 149
Score = 42.1 bits (100), Expect = 6e-06
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
E+ LR AF +D D +GYI+ + +G M+ T E ++ +Q
Sbjct: 8 EEIEELREAFREFDKDKDGYIN-----------CRDLGNCMRTMGYMPT-EMELIELSQQ 55
Query: 93 MDKNQDGRLSLEEFIE 108
++ N G + ++F+E
Sbjct: 56 INMNLGGHVDFDDFVE 71
Score = 29.4 bits (67), Expect = 0.17
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 7 RTFDANGDGTIDFREFL 23
R D NGDG +DF EF+
Sbjct: 132 RDVDLNGDGRVDFEEFV 148
Score = 28.3 bits (64), Expect = 0.53
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNEMLEI 61
FR FD NGDG I E A+ ++ + + DL+G+G + E + +
Sbjct: 94 FREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 69.7 bits (170), Expect = 1e-15
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSV------------TSRGKLEQKLRWAFSMYDLDGN 50
+ + + FD N DG +D + L++ +S+ + ++ F+ YD+
Sbjct: 151 DAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRT 210
Query: 51 GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF--IE 108
G + E+ V K + +++ +K + + D N+DG++ E
Sbjct: 211 GALEGPEVDGFV----KDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCL 266
Query: 109 GAKSDP 114
G K P
Sbjct: 267 GLKHKP 272
Score = 66.2 bits (161), Expect = 3e-14
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-----------EQKLRWAFSMYDLDGNG 51
+ +DA DG + E + L + + YD D +G
Sbjct: 60 KSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSG 119
Query: 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
YIS E+ + K + K + ++ TD + + DKN+DGRL L +
Sbjct: 120 YISAAEL----KNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLA 171
Score = 57.4 bits (138), Expect = 5e-11
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 4 HVFRTFDANGDGTIDFREFLCALS--------VTSRGKLEQKLRWAFSMYDLDGNGYISR 55
++R +DA+ G I E L KL++ ++D + +G +
Sbjct: 108 KIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDL 167
Query: 56 NEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
N++ I+ + + ++ +KIF D ++ G L E K
Sbjct: 168 NDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKD 224
Score = 53.1 bits (127), Expect = 1e-09
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 5 VFRTFDANGDGTIDFREF----------LCALSVTSRGKLEQKLRWAFSMYDLDGNGYIS 54
+++ FDA+ +G I+ +E L + +++Q + S YD +G +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 55 RNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
E+ ++ + + + E KI+R+ D + G +S E
Sbjct: 76 IEELANMILPQEENFLLIFRR-EAPLDNSVEFMKIWRKYDADSSGYISAAEL 126
Score = 45.4 bits (107), Expect = 8e-07
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 38 LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQ 97
+ +D D NGYI E+ + + + K + K+ ++ K+ D
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK--SFMSAYDATF 70
Query: 98 DGRLSLEEFIE 108
DGRL +EE
Sbjct: 71 DGRLQIEELAN 81
Score = 32.3 bits (73), Expect = 0.024
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSV 28
F E + D N DG I E L +
Sbjct: 241 FRECLLTHCDMNKDGKIQKSELALCLGL 268
Score = 25.8 bits (56), Expect = 4.0
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
+I++ D + +G + +E + +
Sbjct: 15 QIWQHFDADDNGYIEGKELDDFFRH 39
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 66.4 bits (163), Expect = 3e-15
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKL-----EQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
D G+G IDF F + ++ +Q+LR AF +YD +GNGYIS + M EI+
Sbjct: 60 DPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAE 119
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + ++ D + ++D + G + EEF+
Sbjct: 120 LD------ETLSSED------LDAMIDEIDADGSGTVDFEEFMG 151
Score = 43.7 bits (104), Expect = 2e-06
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 5 VFRTFD-ANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
FR F+ G G + + L V + + +R +D GNG I +
Sbjct: 18 AFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKI--- 74
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
+ + + ++ + FR DK +G +S + E
Sbjct: 75 ----IGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAE 119
Score = 29.5 bits (67), Expect = 0.21
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 7 RTFDANGDGTIDFREFL 23
DA+G GT+DF EF+
Sbjct: 134 DEIDADGSGTVDFEEFM 150
Score = 28.7 bits (65), Expect = 0.37
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
FR +D G+G I L+ + L D DG+G + E + ++
Sbjct: 97 FRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 66.1 bits (161), Expect = 9e-15
Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 23/117 (19%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGK---------LEQKLRWAFSMYDLDGNG 51
+ D N D + + E+L T + ++ + F D+ G+G
Sbjct: 61 EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 52 YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ E ++ ++ + ++ + L + E
Sbjct: 121 IVDLEE--------FQNYCKNFQLQCADV------PAVYNVITDGGKVTFDLNRYKE 163
Score = 62.6 bits (152), Expect = 2e-13
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 19/120 (15%)
Query: 3 EHVFRTF-DANGDGTIDFREFLCALSVTS---------------RGKLEQKLRWAFSMYD 46
+ F F D N DG+I +F ++ + LE + R D
Sbjct: 11 KFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRAD 70
Query: 47 LDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
++ + +S E L + + +V +P + R +F+ MD + DG + LEEF
Sbjct: 71 INKDDVVSWEEYLAMWEKTIATCKSVADLPAWC---QNRIPFLFKGMDVSGDGIVDLEEF 127
Score = 52.2 bits (125), Expect = 2e-09
Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 34 LEQKLRWAF-SMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTP---EKRTDKI 89
+QK+++ F D++ +G I N+ +++ ++ + + +S E +
Sbjct: 6 QKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDL 65
Query: 90 FRQMDKNQDGRLSLEEFIEGAK 111
+ D N+D +S EE++ +
Sbjct: 66 KGRADINKDDVVSWEEYLAMWE 87
Score = 45.7 bits (108), Expect = 3e-07
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+F+ D +GDG +D EF + + +++ G N E
Sbjct: 106 RIPFLFKGMDVSGDGIVDLEEFQNYC--KNFQLQCADVPAVYNVITDGGKVTFDLNRYKE 163
Query: 61 IVQAIY 66
+ +
Sbjct: 164 LYYRLL 169
Score = 29.1 bits (65), Expect = 0.33
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 83 EKRTDKIFRQM-DKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 125
+++ F D N DG + +F + + + D
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDAD 50
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 65.0 bits (159), Expect = 2e-14
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI-YK 67
FD ++F EF K + F YD D +G I +NE+ + + Y+
Sbjct: 53 FDRENKAGVNFSEFTGVW------KYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYR 106
Query: 68 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ ++ D + R+ D+ G+++ ++FI+
Sbjct: 107 L-------------SDQFHDILIRKFDRQGRGQIAFDDFIQ 134
Score = 45.7 bits (109), Expect = 3e-07
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 5 VFRTFDANGDGTIDFREFLCAL-SVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
VF+ D + G I E AL + T +R SM+D + ++ +E + +
Sbjct: 12 VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWK 71
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
I +FR D++ G + E
Sbjct: 72 YITDW------------------QNVFRTYDRDNSGMIDKNEL 96
Score = 45.7 bits (109), Expect = 3e-07
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
F + + R FD G G I F +F+ V Q+L F YD D +G+I +
Sbjct: 111 FHDILIRKFDRQGRGQIAFDDFIQGCIV------LQRLTDIFRRYDTDQDGWIQVSY 161
Score = 44.2 bits (105), Expect = 1e-06
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 24/110 (21%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLE 60
++VFRT+D + G ID E AL + G +L +Q +D G G I+ ++ ++
Sbjct: 77 QNVFRTYDRDNSGMIDKNELKQAL--SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQ 134
Query: 61 IVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGR--LSLEEFIE 108
+ + ++ + IFR+ D +QDG +S E+++
Sbjct: 135 G------CI-VLQRLTD-----------IFRRYDTDQDGWIQVSYEQYLS 166
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 11/74 (14%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ L F D D +G IS E+ + I D
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTEL-----------QQALSNGTWTPFNPVTVRSIISMFD 54
Query: 95 KNQDGRLSLEEFIE 108
+ ++ EF
Sbjct: 55 RENKAGVNFSEFTG 68
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 64.0 bits (157), Expect = 2e-14
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 10 DANGDGTIDFREFLCALSV-TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
D G G ++F +FL ++ S ++++ AF ++D D G IS + +
Sbjct: 52 DKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRV------A 105
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ ++E ++ + D++ DG +S +EF+
Sbjct: 106 KELGENLTDEE------LQEMIDEADRDGDGEVSEQEFLR 139
Score = 45.9 bits (110), Expect = 2e-07
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 5 VFRTFDANGDGTIDFREFLCAL-----SVTSRGKLEQKLRWAFSMYDLDGNGYISRNEML 59
F FDA+G GTID +E A+ +++++ S D +G G ++ + L
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMRALGFEPK-----KEEIKKMISEIDKEGTGKMNFGDFL 65
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
++ KM E ++ E K F+ D ++ G++S +
Sbjct: 66 TVM---------TQKMSEKDTKEEIL--KAFKLFDDDETGKISFKNL 101
Score = 39.4 bits (93), Expect = 5e-05
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
EQK +R AF ++D DG G I K + M+ E ++ K+ +
Sbjct: 3 EQKQEIREAFDLFDADGTGTID-----------VKELKVAMRALGFEPK-KEEIKKMISE 50
Query: 93 MDKNQDGRLSLEEFIE 108
+DK G+++ +F+
Sbjct: 51 IDKEGTGKMNFGDFLT 66
Score = 28.6 bits (65), Expect = 0.36
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ + D +GDG + +EFL
Sbjct: 118 QEMIDEADRDGDGEVSEQEFL 138
Score = 27.4 bits (62), Expect = 0.86
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
F+ FD + G I F+ +++L+ D DG+G +S E L I++
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 64.6 bits (158), Expect = 3e-14
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
+D N G I F EF +R F D G+G + NE+ + +
Sbjct: 72 YDKNHSGEITFDEFKDLH------HFILSMREGFRKRDSSGDGRLDSNEVRAALLSS--- 122
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G ++ E + R+ D+ + G L ++++E
Sbjct: 123 -G--YQVSEQT------FQALMRKFDRQRRGSLGFDDYVE 153
Score = 46.9 bits (112), Expect = 1e-07
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 18/102 (17%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
FR D +G G I E ALS MYD + +G I+ +E ++
Sbjct: 32 WFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHF 91
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
I M + FR+ D + DGRL E
Sbjct: 92 ILSM------------------REGFRKRDSSGDGRLDSNEV 115
Score = 46.9 bits (112), Expect = 1e-07
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRN 56
+ + R FD G++ F +++ ++R F+ YD + G ++
Sbjct: 130 TFQALMRKFDRQRRGSLGFDDYVELSIF------VCRVRNVFAFYDRERTGQVTFT 179
Score = 46.5 bits (111), Expect = 2e-07
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
FR D++GDG +D E AL S G ++ EQ + +D G + ++ +E+
Sbjct: 98 GFRKRDSSGDGRLDSNEVRAAL--LSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVEL- 154
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGR--LSLEEFIEGA 110
+ V ++ +F D+ + G+ + + FI G+
Sbjct: 155 -----SI-FVCRVRN-----------VFAFYDRERTGQVTFTFDTFIGGS 187
Score = 36.9 bits (86), Expect = 5e-04
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
Q+L F D DG+G IS E+ + T+K+ D
Sbjct: 26 NQELMEWFRAVDTDGSGAISVPEL-----------NAALSSA-GVPFSLATTEKLLHMYD 73
Query: 95 KNQDGRLSLEEFIE 108
KN G ++ +EF +
Sbjct: 74 KNHSGEITFDEFKD 87
Score = 25.7 bits (57), Expect = 4.4
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
V + + FR +D + G +S+ E
Sbjct: 13 TGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPE 48
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 66.5 bits (162), Expect = 4e-14
Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 13/101 (12%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67
DA+G+GTIDF EFL ++ + E+++R AF ++D DGNGYIS E+ ++ + +
Sbjct: 357 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 416
Query: 68 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
K+ ++E D++ R+ D + DG+++ EEF++
Sbjct: 417 ------KLTDEE------VDEMIREADIDGDGQVNYEEFVQ 445
Score = 50.7 bits (121), Expect = 1e-08
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
+ F FD +GDGTI +E + + E +L+ + D DGNG I E L ++
Sbjct: 315 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 374
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
KM + +S E R + FR DK+ +G +S E +
Sbjct: 375 AR---------KMKDTDSEEEIR--EAFRVFDKDGNGYISAAELRHVMTN 413
Score = 47.2 bits (112), Expect = 2e-07
Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 41/132 (31%)
Query: 6 FRTFDANGDGT---------------------IDFREFLCALSVTSRGKL------EQK- 37
F + IDF+E L EQ
Sbjct: 253 RTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTEEQIA 312
Query: 38 -LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN 96
+ AFS++D DG+G I+ K +GTVM+ T E + ++D +
Sbjct: 313 EFKEAFSLFDKDGDGTIT-----------TKELGTVMRSLGQNPT-EAELQDMINEVDAD 360
Query: 97 QDGRLSLEEFIE 108
+G + EF+
Sbjct: 361 GNGTIDFPEFLT 372
Score = 33.7 bits (77), Expect = 0.009
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV----------GTVMKMPEDESTPEKR 85
+ +++ D Y +R E+ + + G ++ + +T ++
Sbjct: 247 EGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQL 306
Query: 86 TD-------KIFRQMDKNQDGRLSLEEF 106
T+ + F DK+ DG ++ +E
Sbjct: 307 TEEQIAEFKEAFSLFDKDGDGTITTKEL 334
Score = 30.6 bits (69), Expect = 0.12
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 6 FRTFDANGDGTIDFREFL 23
R D +GDG +++ EF+
Sbjct: 427 IREADIDGDGQVNYEEFV 444
Score = 28.7 bits (64), Expect = 0.56
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
FR FD +G+G I E + T+ G KL ++++ D+DG+G ++ E ++++
Sbjct: 391 FRVFDKDGNGYISAAELRHVM--TNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 447
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 61.9 bits (151), Expect = 4e-14
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 33 KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
K++ +L AF D +G+GY++ E+ Q + + +D+ ++ + K+ +
Sbjct: 4 KVKAELEAAFKKLDANGDGYVTALEL----QTFMVTLDAYKALSKDKV--KEASAKLIKM 57
Query: 93 MDKNQDGRLSLEEFIE 108
DKN DG++S EEF+
Sbjct: 58 ADKNSDGKISKEEFLN 73
Score = 31.1 bits (71), Expect = 0.028
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 7 RTFDANGDGTIDFREFL 23
+ D N DG I EFL
Sbjct: 56 KMADKNSDGKISKEEFL 72
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 63.3 bits (155), Expect = 4e-14
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 13/100 (13%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
DA+G+GTIDF EFL ++ + + E++L AF ++D DGNG IS E+ ++ +
Sbjct: 56 DADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNL--- 112
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G K+ +DE D++ R+ D + DG ++ EEF+
Sbjct: 113 -G--EKLTDDE------VDEMIREADIDGDGHINYEEFVR 143
Score = 39.0 bits (92), Expect = 6e-05
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
EQ + AF+++D DG+G I+ K +GTVM+ T E + +
Sbjct: 7 EQIAEFKEAFALFDKDGDGTIT-----------TKELGTVMRSLGQNPT-EAELQDMINE 54
Query: 93 MDKNQDGRLSLEEFIE 108
+D + +G + EF+
Sbjct: 55 VDADGNGTIDFPEFLS 70
Score = 28.2 bits (64), Expect = 0.47
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ + R D +GDG I++ EF+
Sbjct: 122 DEMIREADIDGDGHINYEEFV 142
Score = 27.8 bits (63), Expect = 0.78
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
F+ FD +G+G I E + T+ G KL + ++ D+DG+G+I+ E + ++
Sbjct: 89 FKVFDRDGNGLISAAELRHVM--TNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM 145
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 64.1 bits (157), Expect = 5e-14
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 13/100 (13%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
DA+G+GTIDF EFL ++ + E+++R AF ++D DGNGYIS E+ ++ +
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL--- 113
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G K+ ++E D++ R+ D + DG+++ EEF++
Sbjct: 114 -G--EKLTDEE------VDEMIREADIDGDGQVNYEEFVQ 144
Score = 49.1 bits (118), Expect = 2e-08
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCA----LSVTSRGKLEQKLRWAFSMYDLDGNGYIS 54
+ + R D +GDG +++ EF+ ++ +R +
Sbjct: 123 DEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
Score = 39.4 bits (93), Expect = 6e-05
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
EQ + AFS++D DG+G I+ K +GTVM+ T E + +
Sbjct: 8 EQIAEFKEAFSLFDKDGDGTIT-----------TKELGTVMRSLGQNPT-EAELQDMINE 55
Query: 93 MDKNQDGRLSLEEFIE 108
+D + +G + EF+
Sbjct: 56 VDADGNGTIDFPEFLT 71
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 63.3 bits (155), Expect = 6e-14
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
D+ G + + +F + + +++ AF ++D D G IS + + + +
Sbjct: 69 DSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKEL--- 125
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G + ++E + + D + DG ++ EFI
Sbjct: 126 -G--ETLTDEE------LRAMIEEFDLDGDGEINENEFIA 156
Score = 45.6 bits (109), Expect = 3e-07
Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 5 VFRTFDANGDGTIDFREFLCAL-----SVTSRGKLEQKLRWAFSMYDLDGNGYISRNEML 59
F FD N DG +D+ E A+ + ++++ YD +G + ++
Sbjct: 28 AFSLFDMNNDGFLDYHELKVAMKALGFELP-----KREILDLIDEYDSEGRHLMKYDDFY 82
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
++ K+ + + E + + F+ D + G++S++
Sbjct: 83 IVM---------GEKILKRDPLDEIK--RAFQLFDDDHTGKISIKNL 118
Score = 39.5 bits (93), Expect = 6e-05
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 24/81 (29%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKM-----PEDESTPEKRTD 87
EQK + AFS++D++ +G++ Y + MK P+ E
Sbjct: 20 EQKQEIYEAFSLFDMNNDGFLD-----------YHELKVAMKALGFELPKRE------IL 62
Query: 88 KIFRQMDKNQDGRLSLEEFIE 108
+ + D + ++F
Sbjct: 63 DLIDEYDSEGRHLMKYDDFYI 83
Score = 29.1 bits (66), Expect = 0.26
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ FD +GDG I+ EF+
Sbjct: 135 RAMIEEFDLDGDGEINENEFI 155
Score = 28.7 bits (65), Expect = 0.39
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
F+ FD + G I + +++LR +DLDG+G I+ NE + I
Sbjct: 102 FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 63.4 bits (155), Expect = 6e-14
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 10 DANGDGTIDFREFLCALSV-TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
D +G GTIDF EFL ++ +++ AF ++D D +G I+ ++ + + +
Sbjct: 74 DKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG-- 131
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ E+E ++ + D+N D + +EFI
Sbjct: 132 ----ENLTEEE------LQEMIAEADRNDDNEIDEDEFIR 161
Score = 46.0 bits (110), Expect = 2e-07
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 5 VFRTFDANGDGTIDFREFLCAL-----SVTSRGKLEQKLRWAFSMYDLDGNGYISRNEML 59
F FD +G GTID +E A+ +++++ S D DG+G I E L
Sbjct: 33 AFDLFDTDGSGTIDAKELKVAMRALGFEPK-----KEEIKKMISEIDKDGSGTIDFEEFL 87
Query: 60 EIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
++ KM E +S E K FR D + G +++++
Sbjct: 88 TMM---------TAKMGERDSREEIL--KAFRLFDDDNSGTITIKDL 123
Score = 38.7 bits (91), Expect = 1e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 24/81 (29%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKM-----PEDESTPEKRTD 87
EQK +R AF ++D DG+G I K + M+ ++E
Sbjct: 25 EQKQEIREAFDLFDTDGSGTID-----------AKELKVAMRALGFEPKKEE------IK 67
Query: 88 KIFRQMDKNQDGRLSLEEFIE 108
K+ ++DK+ G + EEF+
Sbjct: 68 KMISEIDKDGSGTIDFEEFLT 88
Score = 29.1 bits (66), Expect = 0.31
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 9 FDANGDGTIDFREFL 23
D N D ID EF+
Sbjct: 146 ADRNDDNEIDEDEFI 160
Score = 27.9 bits (63), Expect = 0.70
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
FR FD + GTI ++ E++L+ + D + + I +E + I++
Sbjct: 107 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 63.2 bits (154), Expect = 1e-13
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 23/110 (20%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQK-----------LRWAFSMYDLDGNGYISRNEM 58
I F +FL + +L++ F ++D DG+G I+ +E
Sbjct: 76 GMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEW 135
Query: 59 LEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + +++ + FR D + G L ++E
Sbjct: 136 KAY------GKISGISPSQED------CEATFRHCDLDNAGDLDVDEMTR 173
Score = 49.4 bits (118), Expect = 2e-08
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 11/113 (9%)
Query: 4 HVFRTFDANGDGTIDFREFLCALSVTSRGKL-----EQKLRWAFSMYDLDGNG-----YI 53
H+F D NG+G I E + S KL + K G G I
Sbjct: 24 HMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEI 83
Query: 54 SRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + L+ + + + + + D +F DK+ G ++L+E+
Sbjct: 84 AFPQFLDGWKQLATS-ELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEW 135
Score = 40.9 bits (96), Expect = 2e-05
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKM----PEDESTPEKRTDKIFR 91
++ + F D++GNG I+ +E+ + K + PE + + FR
Sbjct: 20 KRHKHMFDFLDINGNGKITLDEI------VSKASDDICAKLEATPEQTKRHQVCVEAFFR 73
Query: 92 QMDKNQDGRLSLEEFIEGAKS 112
++ +F++G K
Sbjct: 74 GCGMEYGKEIAFPQFLDGWKQ 94
Score = 33.9 bits (78), Expect = 0.006
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
VF FD +G GTI E+ ++ ++ F DLD G + +EM
Sbjct: 118 VFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQ 174
Score = 30.1 bits (68), Expect = 0.13
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 73 MKMPEDESTPEKRTD--KIFRQMDKNQDGRLSLEEFIEGAKSD 113
+K+ D P +F +D N +G+++L+E + A D
Sbjct: 7 VKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDD 49
Score = 28.9 bits (65), Expect = 0.29
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
E FR D + G +D E
Sbjct: 152 EATFRHCDLDNAGDLDVDEMT 172
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 62.2 bits (152), Expect = 1e-13
Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 10 DANGDGTIDFREFLCALSV------TSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
++ + + V + + AF ++D + G +S ++ +
Sbjct: 51 SLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYM-- 108
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ G K+ + E D++ + ++ + +G + ++FIE
Sbjct: 109 ----LTGLGEKLTDAE------VDELLKGVEVDSNGEIDYKKFIE 143
Score = 38.7 bits (91), Expect = 8e-05
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+ + F+++D G G I+ +G ++ T + D I
Sbjct: 4 RANKDIFTLFDKKGQGAIA-----------KDSLGDYLRAIGYNPTNQLVQDIINADSSL 52
Query: 96 NQDGRLSLEEFIE 108
L+L++
Sbjct: 53 RDASSLTLDQITG 65
Score = 29.1 bits (66), Expect = 0.27
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
F+ FD G + + L T G KL + ++ ++D NG I + +E V
Sbjct: 89 FQVFDKESTGKVSVGDLRYML--TGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDV 145
Score = 28.3 bits (64), Expect = 0.40
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ + + + + +G ID+++F+
Sbjct: 122 DELLKGVEVDSNGEIDYKKFI 142
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 60.0 bits (146), Expect = 3e-13
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
+ D ++F V + K ++ F + D D +G+I +E+ I++
Sbjct: 17 AFTAADSFDHKKFFQM--VGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILK---GFS 71
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ E T + DK+ DG++ +EEF
Sbjct: 72 SDARDLSAKE------TKTLMAAGDKDGDGKIGVEEFST 104
Score = 35.7 bits (83), Expect = 6e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 5 VFRTFDANGDGTIDFRE---FLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
VF D + G I+ E L S +R ++ + + D DG+G I E +
Sbjct: 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL 105
Query: 62 VQ 63
V
Sbjct: 106 VA 107
Score = 26.9 bits (60), Expect = 1.2
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 112
++MVG K +D K+F +DK++ G + +E K
Sbjct: 30 FQMVGLKKKSADDVK-------KVFHILDKDKSGFIEEDELGSILKG 69
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 60.0 bits (146), Expect = 4e-13
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
D + ++F ++ K +L+ F + D D +G+I +E+ +Q
Sbjct: 17 DCQAPDSFSPKKFFQISGMS--KKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFE--- 71
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
T D + DG++ EEF E
Sbjct: 72 ------SGARVLTASETKTFLAAADHDGDGKIGAEEFQE 104
Score = 38.4 bits (90), Expect = 6e-05
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 5 VFRTFDANGDGTIDF---REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+FR D + G I+ + FL +R + + + D DG+G I E E+
Sbjct: 46 IFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
Query: 62 VQA 64
VQ+
Sbjct: 106 VQS 108
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 60.7 bits (148), Expect = 8e-13
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 7 RTFDANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
G I+F FL +G E + AF + D DG G I ++ + E+
Sbjct: 65 DAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEEL---- 120
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
+ + +E ++ + G + +
Sbjct: 121 --LTTGGGRFTPEE------IKNMWAAFPPDVAGNVDYKNIC 154
Score = 36.8 bits (86), Expect = 5e-04
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 25/78 (32%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKM-----PEDESTPEKRTDKIF 90
+ + AF++ D + +G I ++++ ++E
Sbjct: 25 EDFKEAFTVIDQNADGIIDKDDL-----------RETFAAMGRLNVKNE---------EL 64
Query: 91 RQMDKNQDGRLSLEEFIE 108
M K G ++ F+
Sbjct: 65 DAMIKEASGPINFTVFLT 82
Score = 29.1 bits (66), Expect = 0.26
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
F+ D +G G+I L T+ G + ++++ ++ + D G + + ++
Sbjct: 101 FKVLDPDGKGSIKKSFLEELL--TTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 157
Score = 28.3 bits (64), Expect = 0.55
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
++++ F + G +D++
Sbjct: 134 KNMWAAFPPDVAGNVDYKNIC 154
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 59.8 bits (146), Expect = 9e-13
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 7 RTFDANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
+ G I+F FL G E +R AF+ +D + +G+I + + E+
Sbjct: 46 EGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLREL---- 101
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
+ + ++E D+++R+ ++ G + EF
Sbjct: 102 --LTTMGDRFTDEE------VDEMYREAPIDKKGNFNYVEFT 135
Score = 38.6 bits (91), Expect = 9e-05
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 21/92 (22%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQA---------IYKMVG------------TVMK 74
Q+ + AF+M D + +G+I + ++ +++ + + M+ T+
Sbjct: 7 QEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFG 66
Query: 75 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + PE F D+ G + +
Sbjct: 67 EKLNGTDPEDVIRNAFACFDEEASGFIHEDHL 98
Score = 29.4 bits (67), Expect = 0.17
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
F FD G I L T+ G + ++++ + +D G + E I+
Sbjct: 82 FACFDEEASGFIHEDHLRELL--TTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 138
Score = 28.2 bits (64), Expect = 0.46
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ ++R + G ++ EF
Sbjct: 115 DEMYREAPIDKKGNFNYVEFT 135
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 59.2 bits (144), Expect = 9e-13
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
+ T + ++F ++ +++ F D D +GY+ +E+ +Q K
Sbjct: 17 ECQDPDTFEPQKFFQTSGLS--KMSASQVKDIFRFIDNDQSGYLDGDELKYFLQ---KFQ 71
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
++ E E T + D + DG++ +EF E
Sbjct: 72 SDARELTESE------TKSLMDAADNDGDGKIGADEFQE 104
Score = 37.3 bits (87), Expect = 2e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 5 VFRTFDANGDGTIDFRE---FLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+FR D + G +D E FL +R E + + D DG+G I +E E+
Sbjct: 46 IFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
Query: 62 VQA 64
V +
Sbjct: 106 VHS 108
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 59.4 bits (145), Expect = 1e-12
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
D +G+ I+F EFL +S + EQ+L AF ++D +G+G IS E+ ++ +I
Sbjct: 57 DVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG-- 114
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
K+ + E D++ R++ + G +++++F
Sbjct: 115 ----EKLTDAE------VDEMLREVS-DGSGEINIKQFAA 143
Score = 39.0 bits (92), Expect = 6e-05
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
EQ + AF+++D D +G IS + TVM+ + E + +
Sbjct: 8 EQIAEFKEAFALFDKDNSGSIS-----------ASELATVMRSLGLSPS-EAEVADLMNE 55
Query: 93 MDKNQDGRLSLEEFIE 108
+D + + + EF+
Sbjct: 56 IDVDGNHAIEFSEFLA 71
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 60.2 bits (146), Expect = 2e-12
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 28/115 (24%)
Query: 10 DANGDGT-----IDFREFLCALSVTSRGKLEQK-----------LRWAFSMYDLDGNGYI 53
G G D+ ++ + +LE+ F + D D NG I
Sbjct: 67 FFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAI 126
Query: 54 SRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ +E +A K G + ++ ++ FR D ++ G+L ++E
Sbjct: 127 TLDEW----KAYTKAAG--IIQSSED------CEETFRVCDIDESGQLDVDEMTR 169
Score = 55.6 bits (134), Expect = 1e-10
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-----EQKLRWAFSMYDLDGNGY----- 52
+H+F D N +G I E + S L + K G G
Sbjct: 19 KHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVE 78
Query: 53 ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+E + + + + D +F +DK+Q+G ++L+E+
Sbjct: 79 TDWPAYIEGWKKLATD-ELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEW 131
Score = 42.9 bits (101), Expect = 5e-06
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
+ + +F D + +G I E+ + + F + D+D +G + +EM
Sbjct: 110 WGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
Score = 42.5 bits (100), Expect = 6e-06
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM-- 93
+ + F+ D++ NG IS +EM+ K V+ KR
Sbjct: 16 GRHKHMFNFLDVNHNGKISLDEMVY------KASDIVINNLGATPEQAKRHKDAVEAFFG 69
Query: 94 --DKNQDGRLSLEEFIEGAK 111
+IEG K
Sbjct: 70 GAGMKYGVETDWPAYIEGWK 89
Score = 33.6 bits (77), Expect = 0.008
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 73 MKMPEDESTPEKRTD--KIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDP 124
K+ D P +F +D N +G++SL+E + A ++ L P
Sbjct: 3 SKLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDI--VINNLGATP 54
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 60.6 bits (147), Expect = 2e-12
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 7 RTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
R FD + +G I F EF+ K + F M +G + +E+ + A+
Sbjct: 94 RIFDTDFNGHISFYEFMAMY------KFMELAYNLFVMNARARSGTLEPHEI---LPALQ 144
Query: 67 KMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
++ G + + T + ++ L +I
Sbjct: 145 QL-G--FYINQR-------TSLLLHRLFARGMAFCDLNCWIA 176
Score = 50.9 bits (122), Expect = 7e-09
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
F D + GT++ E + Q ++D D NG+IS E + + +
Sbjct: 56 WFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKF 115
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ +F + + G L E
Sbjct: 116 MELAY------------------NLFVMNARARSGTLEPHEI 139
Score = 38.6 bits (90), Expect = 1e-04
Identities = 15/112 (13%), Positives = 30/112 (26%), Gaps = 28/112 (25%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
+F GT++ E L AL G + Q+ G + N + I
Sbjct: 122 LFVMNARARSGTLEPHEILPAL--QQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAICA 179
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN-----QDG--RLSLEEFIE 108
+T ++ + N + +F++
Sbjct: 180 FA------------------AQTRSAYQMIFMNPYYGPMKPFNPMEFGKFLD 213
Score = 37.8 bits (88), Expect = 3e-04
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
++ F D D +G + NE+ G ++ ++ R D
Sbjct: 50 YTRIYQWFMGVDRDRSGTLEINEL----MMGQFPGGI--RLSPQT------ALRMMRIFD 97
Query: 95 KNQDGRLSLEEFIE 108
+ +G +S EF+
Sbjct: 98 TDFNGHISFYEFMA 111
Score = 28.6 bits (64), Expect = 0.41
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 75 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
+P D+ T + F +D+++ G L + E
Sbjct: 45 IPLDQYTRIYQ---WFMGVDRDRSGTLEINE 72
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 58.6 bits (143), Expect = 3e-12
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
DA G+G I F EFL + + E LR AF +D +G GYI + + + + +
Sbjct: 52 DATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNL--- 108
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
G ++ E + + G++ + FI
Sbjct: 109 -G--DRLKPHE------FAEFLGITETE-KGQIRYDNFIN 138
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
+Q + AF ++D + G+I+ + + TV+K +++F +
Sbjct: 3 DQVSEFKEAFELFDSERTGFIT-----------KEGLQTVLKQFGVRVE-PAAFNEMFNE 50
Query: 93 MDKNQDGRLSLEEFIE 108
D +G++ EF+
Sbjct: 51 ADATGNGKIQFPEFLS 66
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 57.7 bits (140), Expect = 5e-12
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67
+ + + L ++ + +L FS+ I+ +
Sbjct: 12 TTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRR------- 64
Query: 68 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ E ++ + R+ D + DG L+ EF
Sbjct: 65 ----NSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101
Score = 32.3 bits (74), Expect = 0.014
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 7 RTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLD-GNGYIS 54
R D +GDG ++ EF + S +E W + N +S
Sbjct: 84 REGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQELCNHNLS 132
Score = 32.3 bits (74), Expect = 0.017
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 11/73 (15%)
Query: 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93
+E + +ML ++ KM +E E K F +
Sbjct: 1 MEPTEKSMLLETTSTTKMETKYEDMLPVM---------AEKMDVEEFVSELC--KGFSLL 49
Query: 94 DKNQDGRLSLEEF 106
+ ++ E
Sbjct: 50 ADPERHLITAESL 62
Score = 30.8 bits (70), Expect = 0.065
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNEMLEI 61
F I + + ++ + DLDG+G +++ E +
Sbjct: 43 CKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
Query: 62 VQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKN 96
MV PE E +K Q N
Sbjct: 103 ------MVRL---SPEMMEDAETWLEKALTQELCN 128
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 57.9 bits (141), Expect = 5e-12
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK---LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
++ +D +FL L+ + ++ F ++D D G I E+ +
Sbjct: 47 ESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYV----- 101
Query: 67 KMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
+ K+ +E D++ + + DG ++ +F+
Sbjct: 102 -LTSLGEKLSNEE------MDELLKGVPVK-DGMVNYHDFV 134
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ + AFS++D G G I +G +++ + + T +++
Sbjct: 4 DSPYKQAFSLFDRHGTGRIP-----------KTSIGDLLR-----ACGQNPTLAEITEIE 47
Query: 95 KNQDGRLSLEEFIE 108
+ +E+F++
Sbjct: 48 STLPAEVDMEQFLQ 61
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 56.5 bits (137), Expect = 5e-12
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 17 IDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76
E L S+ E+++R AF + D DGNGYIS E+ VM
Sbjct: 10 GSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAEL-----------RHVMTNL 58
Query: 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
++ T E+ D++ R+ D + DG+++ EEF++
Sbjct: 59 GEKLTDEE-VDEMIREADIDGDGQVNYEEFVQ 89
Score = 29.6 bits (67), Expect = 0.10
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
FR D +G+G I E ++ ++++ D+DG+G ++ E ++++
Sbjct: 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 91
Score = 28.8 bits (65), Expect = 0.17
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ + R D +GDG +++ EF+
Sbjct: 68 DEMIREADIDGDGQVNYEEFV 88
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 57.2 bits (139), Expect = 1e-11
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK---LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
G+ E L S + AF +D +G G IS E+ +
Sbjct: 56 KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNV----- 110
Query: 67 KMVGTVMKMPEDESTPEKRTDKIFRQMD--KNQDGRLSLEEFI 107
+ ++ ED+ + IF D ++ DG + E+ +
Sbjct: 111 -LKMLGERITEDQ------CNDIFTFCDIREDIDGNIKYEDLM 146
Score = 35.6 bits (83), Expect = 0.001
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 5 VFRTFDA--NGDGTIDFREFLCAL-----SVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
VF FD DG +D + L + T E ++ G E
Sbjct: 14 VFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT-----EAQVH-QHGGTKKMGEKAYKLEE 67
Query: 58 MLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+L I + + D T + F+ D+ G +S E
Sbjct: 68 ILPIYEEMSSK---------DTGTAADEFMEAFKTFDREGQGLISSAEI 107
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 15/75 (20%)
Query: 36 QKLRWAFSMYDL--DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93
+++R F ++D +G + VG +++ T +
Sbjct: 9 EEVREVFDLFDFWDGRDGDVD-----------AAKVGDLLRCLGMNPTEAQVHQHG--GT 55
Query: 94 DKNQDGRLSLEEFIE 108
K + LEE +
Sbjct: 56 KKMGEKAYKLEEILP 70
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 55.8 bits (135), Expect = 1e-11
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 20 REFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDE 79
RE L G+ +LR F+ D + +G + R E + + ++ +
Sbjct: 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL--------RVRPAD 62
Query: 80 STPEKRTDKIFRQMDKNQDGRLSLEEFIEG 109
+ +F+++D ++DG ++ +EF G
Sbjct: 63 ------AEAVFQRLDADRDGAITFQEFARG 86
Score = 42.7 bits (101), Expect = 1e-06
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
VF DAN G ++ EF + F D D +G I+ E
Sbjct: 32 VFAACDANRSGRLEREEFRALCT--ELRVRPADAEAVFQRLDADRDGAITFQE 82
Score = 35.8 bits (83), Expect = 5e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCAL 26
AE VF+ DA+ DG I F+EF
Sbjct: 63 AEAVFQRLDADRDGAITFQEFARGF 87
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 57.4 bits (139), Expect = 1e-11
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 24/120 (20%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEML--------- 59
D + G + F F + F D DG+G + +E+
Sbjct: 49 LDRDHTGKMGFNAFKELW------AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYR 102
Query: 60 ---EIVQAIYKMVGTVMKMPEDE----STPEKRTDKIFRQMDKNQDGR--LSLEEFIEGA 110
+ + I K ++ D+ + FR+ D Q G ++F++G
Sbjct: 103 LSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGT 162
Score = 36.6 bits (85), Expect = 6e-04
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRN--EM 58
+ + + +G I F +++ + L F D G + +
Sbjct: 107 TLTTIVKRYS--KNGRIFFDDYVACCVK------LRALTDFFRKRDHLQQGSANFIYDDF 158
Query: 59 LEIVQAI 65
L+ AI
Sbjct: 159 LQGTMAI 165
Score = 35.0 bits (81), Expect = 0.002
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 23/102 (22%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKL-----RWAFSMYDLDGNGYISRNEMLEIVQA 64
A DG +D E L+ + R +M D D G + N E+ A
Sbjct: 9 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA 68
Query: 65 IYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + F +D++ G + E
Sbjct: 69 LNAWK------------------ENFMTVDQDGSGTVEHHEL 92
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 56.8 bits (138), Expect = 2e-11
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 22/105 (20%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK---LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
D +DF FL L ++ + + F ++D +GNG + E+ ++
Sbjct: 58 DELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLT--- 114
Query: 67 KMVGTVMKMPEDESTPEKRTDKIFRQM---DKNQDGRLSLEEFIE 108
+ EK T++ + ++ +G ++ E F++
Sbjct: 115 -------------TLGEKMTEEEVETVLAGHEDSNGCINYEAFLK 146
Score = 36.8 bits (86), Expect = 4e-04
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 29/100 (29%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQA---------IYKMVGTV-------------- 72
++ + AF ++D G+G I ++ ++++A + K++G
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFET 69
Query: 73 ------MKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + FR DK +G++ E
Sbjct: 70 FLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAEL 109
Score = 27.2 bits (61), Expect = 1.2
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 6 FRTFDANGDGTIDFREFLCALSVT----SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
FR FD G+G + E L+ + ++E L D NG I+ L+
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA-----GHEDSNGCINYEAFLKH 147
Query: 62 VQAI 65
+ ++
Sbjct: 148 ILSV 151
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 56.4 bits (137), Expect = 3e-11
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 10 DANGDGTIDFREFLCALS--VTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67
G+ ++ F EFL A + AF +D +G G+IS E+ +
Sbjct: 56 HKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHV------ 109
Query: 68 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQD--GRLSLEEFIE 108
+ ++ +++ D+I + D +D G + E+F++
Sbjct: 110 LTALGERLSDED------VDEIIKLTDLQEDLEGNVKYEDFVK 146
Score = 36.0 bits (84), Expect = 8e-04
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 23/109 (21%)
Query: 5 VFRTFDA--NGDGTIDFREFLCAL-----SVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
VF FD DG +D + + + + A G + E
Sbjct: 14 VFELFDFWDGRDGAVDAFKLGDVCRCLGINPR-----NEDVF-AVGGTHKMGEKSLPFEE 67
Query: 58 MLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
L + + E + F+ D+ G +S E
Sbjct: 68 FLPAYEGLMD----------CEQGTFADYMEAFKTFDREGQGFISGAEL 106
Score = 33.7 bits (78), Expect = 0.006
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 25/80 (31%)
Query: 36 QKLRWAFSMYDL--DGNGYISRNEMLEIVQAIYKMVGTVMKM-----PEDESTPEKRTDK 88
L+ F ++D +G + +G V + ++
Sbjct: 9 DDLKDVFELFDFWDGRDGAVD-----------AFKLGDVCRCLGINPRNED------VFA 51
Query: 89 IFRQMDKNQDGRLSLEEFIE 108
+ K + L EEF+
Sbjct: 52 V-GGTHKMGEKSLPFEEFLP 70
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 56.2 bits (136), Expect = 6e-11
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 11 ANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
A G I+F FL G E + AF+++D +G+G + +
Sbjct: 100 AEAPGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRS------LT 152
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
K +DE D+ + + +G + +++F +
Sbjct: 153 TWGEKFSQDE------VDQALSEAPIDGNGLIDIKKFAQ 185
Score = 36.1 bits (84), Expect = 0.001
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 24/77 (31%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMK----MPEDESTPEKRTDKIFR 91
Q+ + AF + D D +G+IS+N++ + T++
Sbjct: 57 QEFKEAFQLIDQDKDGFISKNDI-----------RATFDSLGRLC---------TEQELD 96
Query: 92 QMDKNQDGRLSLEEFIE 108
M G ++ F+
Sbjct: 97 SMVAEAPGPINFTMFLT 113
Score = 28.8 bits (65), Expect = 0.42
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
+ +G+G ID ++F
Sbjct: 164 DQALSEAPIDGNGLIDIKKFA 184
Score = 26.5 bits (59), Expect = 2.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIV 62
F FD GDG +L T+ G K + ++ A S +DGNG I + +I+
Sbjct: 132 FNLFD-EGDGKCKEETLKRSL--TTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQIL 187
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 54.8 bits (133), Expect = 8e-11
Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 47/139 (33%)
Query: 5 VFRTFDANGDGTI---------------------------------DFREFL--CALSVT 29
F+ FD + DG + D F +
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIK 69
Query: 30 SRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKI 89
+ + +++ AF D +GNG I E+ ++ ++ + E +++
Sbjct: 70 TPTEQSKEMLDAFRALDKEGNGTIQEAELRQL------LLNLGDALTSSE------VEEL 117
Query: 90 FRQMDKNQDGRLSLEEFIE 108
+++ + DG ++ E F++
Sbjct: 118 MKEVSVSGDGAINYESFVD 136
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 25/96 (26%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQA---------IYKMVGTV------------- 72
+++ F ++D D +G +S E+ +++ + + G +
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTV 63
Query: 73 --MKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + + K FR +DK +G + E
Sbjct: 64 YRKPI-KTPTEQSKEMLDAFRALDKEGNGTIQEAEL 98
Score = 29.4 bits (67), Expect = 0.17
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
FR D G+GTI E L + G L ++ + G+G I+ ++++
Sbjct: 82 FRALDKEGNGTIQEAELRQLL--LNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139
Query: 64 AIYKM 68
Y +
Sbjct: 140 TGYPL 144
Score = 28.3 bits (64), Expect = 0.46
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 3 EHVFRTFDANGDGTIDFREFL 23
E + + +GDG I++ F+
Sbjct: 115 EELMKEVSVSGDGAINYESFV 135
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 54.8 bits (133), Expect = 9e-11
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 11 ANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMV 69
G ++F FL S G E+ +R AF+M+D ++ + ++++ +
Sbjct: 61 KEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMG--- 117
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+DE F++ G+ +F
Sbjct: 118 ---DNFNKDE------MRMTFKEAPVE-GGKFDYVKFTA 146
Score = 37.9 bits (89), Expect = 2e-04
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQA---------IYKMVG------------TVMK 74
Q+++ AFSM D+D +G++S+ ++ I + + M+ ++
Sbjct: 18 QEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFS 77
Query: 75 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ E+ F D+ + +L++E
Sbjct: 78 DKLSGTDSEETIRNAFAMFDEQETKKLNIEYI 109
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 54.5 bits (132), Expect = 1e-10
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK---LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
+ I F EFL L + K + ++D +GNG + E+ +
Sbjct: 56 EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHV----- 110
Query: 67 KMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ KM E+E +++ + ++ +G ++ E F++
Sbjct: 111 -LATLGEKMTEEE------VEELMKG-QEDSNGCINYEAFVK 144
Score = 36.4 bits (85), Expect = 7e-04
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 29/100 (29%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQA---------IYKMVGTV-------------- 72
+ AF ++D G+ I+ +++ +I +A I K++G
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEE 67
Query: 73 ------MKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + + R DK +G + E
Sbjct: 68 FLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAEL 107
Score = 27.5 bits (62), Expect = 0.76
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 6 FRTFDANGDGTIDFREF 22
R FD G+GT+ E
Sbjct: 91 LRVFDKEGNGTVMGAEL 107
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 55.2 bits (133), Expect = 1e-10
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 24/118 (20%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEML--------- 59
D + GT+ F EF + R F +D D +G + E+
Sbjct: 82 LDRDMSGTMGFNEFKELW------AVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFR 135
Query: 60 ---EIVQAIYKMVGTVMKMPEDE----STPEKRTDKIFRQMDKNQDGR--LSLEEFIE 108
+ V +I K T K+ D+ + FR+ D Q G ++FI+
Sbjct: 136 LSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQ 193
Score = 37.8 bits (88), Expect = 3e-04
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 3 EHVFRTF--DANGDGTIDFREFLCALSVTSRGKLEQKL-----RWAFSMYDLDGNGYISR 55
+ ++ F A DG ID E L+ + + R SM D D +G +
Sbjct: 33 DPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 92
Query: 56 NEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
NE E+ + + F D ++ G + +E
Sbjct: 93 NEFKELWAVLNGW------------------RQHFISFDTDRSGTVDPQEL 125
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 52.5 bits (127), Expect = 2e-10
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 12 NGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGT 71
+ G ID + A ++ L+ F M D D +G I+ +E+
Sbjct: 1 HSSGHIDDDDKHMAERLSEEEIGG--LKELFKMIDTDNSGTITFDEL-----------KD 47
Query: 72 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
+K E + D ++ G + EFI
Sbjct: 48 GLKR-VGSELMESEIKDLMDAADIDKSGTIDYGEFI 82
Score = 36.7 bits (86), Expect = 2e-04
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
+F+ D + GTI F E L +E +++ D+D +G I E
Sbjct: 28 LFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 80
Score = 31.7 bits (73), Expect = 0.016
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 10 DANGDGTIDFREFLCA 25
D + GTID+ EF+ A
Sbjct: 69 DIDKSGTIDYGEFIAA 84
Score = 27.5 bits (62), Expect = 0.45
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
++F+ +D + G ++ +E +G K
Sbjct: 27 ELFKMIDTDNSGTITFDELKDGLKR 51
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 54.3 bits (131), Expect = 2e-10
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 24/118 (20%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEML--------- 59
D + GT+ F EF + R F +D D +G + E+
Sbjct: 51 LDRDMSGTMGFNEFKELW------AVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFR 104
Query: 60 ---EIVQAIYKMVGTVMKMPEDE----STPEKRTDKIFRQMDKNQDGR--LSLEEFIE 108
+ V +I K T K+ D+ + FR+ D Q G S ++FI+
Sbjct: 105 LNPQTVNSIAKRYSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQ 162
Score = 35.1 bits (81), Expect = 0.002
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 28/120 (23%)
Query: 11 ANGDGTIDFREFLCALSVTSRGKLEQKL-----RWAFSMYDLDGNGYISRNEMLEIVQAI 65
A DG ID E L+ + + R SM D D +G + NE E+ +
Sbjct: 12 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 71
Query: 66 YKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE-----GAKSDPSIVRLL 120
+ F D ++ G + +E + G + +P V +
Sbjct: 72 NGWR------------------QHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSI 113
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 50.9 bits (123), Expect = 4e-10
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 38 LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQ 97
+ F +D + +G +S +E V ++ K F ++D +
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEF-----------REVALAF-SPYFTQEDIVKFFEEIDVDG 50
Query: 98 DGRLSLEEFIE 108
+G L+ +EF
Sbjct: 51 NGELNADEFTS 61
Score = 40.2 bits (95), Expect = 6e-06
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
VF FD N DG + EF S ++ + F D+DGNG ++ +E ++
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE 64
Score = 32.1 bits (74), Expect = 0.007
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALS 27
F D +G+G ++ EF +
Sbjct: 40 VKFFEEIDVDGNGELNADEFTSCIE 64
Score = 29.0 bits (66), Expect = 0.11
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 88 KIFRQMDKNQDGRLSLEEFIEGAKS 112
++F + DKN+DG+LSL+EF E A +
Sbjct: 5 RVFEKFDKNKDGKLSLDEFREVALA 29
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 52.6 bits (127), Expect = 5e-10
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 10 DANGDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
+ + ++L LS+ K ++L F+ +D + GY+++++M I +
Sbjct: 57 KELYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNI------L 110
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+ + E + + + F E
Sbjct: 111 TTWGDALTDQE------AIDALNAFSS--EDNIDYKLFCE 142
Score = 36.8 bits (86), Expect = 4e-04
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 21/92 (22%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEI------------VQAIYKMVG---------TVMK 74
+ + G IS + + I ++ G +
Sbjct: 15 DESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLS 74
Query: 75 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ + + K+F D N G L+ +
Sbjct: 75 ICVHDKDNVEELIKMFAHFDNNCTGYLTKSQM 106
Score = 26.4 bits (59), Expect = 1.9
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 6 FRTFDANGDGTIDFREF 22
F FD N G + +
Sbjct: 90 FAHFDNNCTGYLTKSQM 106
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.3 bits (121), Expect = 1e-09
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 21/89 (23%)
Query: 34 LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMK----MPEDESTPEKRTDKI 89
+ + F +D +G+G IS +E+ ++ DE ++
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSEL-----------TDALRTLGSTSADE------VQRM 43
Query: 90 FRQMDKNQDGRLSLEEFIEGAKSDPSIVR 118
++D + DG + EFI ++P +++
Sbjct: 44 MAEIDTDGDGFIDFNEFISFCNANPGLMK 72
Score = 34.8 bits (81), Expect = 0.001
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRG-KLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+F+ FD NGDG I E AL + G +++ + D DG+G+I NE +
Sbjct: 8 IFKRFDTNGDGKISLSELTDAL--RTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISF 63
Score = 31.4 bits (72), Expect = 0.015
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAF 42
+ + D +GDG IDF EF+ + L + + F
Sbjct: 41 QRMMAEIDTDGDGFIDFNEFISFC--NANPGLMKDVAKVF 78
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 52.0 bits (124), Expect = 1e-09
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 1 FAEHVFRT---FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
FA +F + + E + + +LR F M D + +G ++ E
Sbjct: 60 FAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEE 119
Query: 58 MLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ EI+ + ++ + ++ T I ++D G + +E+
Sbjct: 120 VKEIIALSASANK--LSKIKERA--DEYTALIMEELDPTNLGYIEMEDL 164
Score = 33.5 bits (76), Expect = 0.008
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 5 VFRTFDA-NGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
V + F+ DG + F + + + ++ + + ++++E+ + +
Sbjct: 30 VEKRFNQLQVDGVLLRSRFGKCIGMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYE 89
Query: 64 AIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCD 123
+ + R F +DKN DGRL+ EE E S +L +
Sbjct: 90 QLTD------------QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIK 137
Query: 124 PQ 125
+
Sbjct: 138 ER 139
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 51.4 bits (124), Expect = 2e-09
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 13 GDGTIDFREFLCALSVTSRGK-LEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGT 71
G ++F FL G E LR AFSM+D DG G+I + + ++ +
Sbjct: 61 CPGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDL------LENM 114
Query: 72 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
++E +++ + + + + +
Sbjct: 115 GDNFSKEE------IKNVWKDAPLK-NKQFNYNKMV 143
Score = 38.7 bits (91), Expect = 1e-04
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 21/92 (22%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQA---------IYKMVG------------TVMK 74
Q+L+ AF+M D D +G+I ++ ++ + + M+ T+
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFG 75
Query: 75 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+ PE F D++ G + +
Sbjct: 76 EKVSGTDPEDALRNAFSMFDEDGQGFIPEDYL 107
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 49.9 bits (120), Expect = 2e-09
Identities = 14/74 (18%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
E+++ AF ++D +G+G I +E +M+ +E + ++ ++ D
Sbjct: 7 EEEILRAFKVFDANGDGVIDFDEF-----------KFIMQKVGEEPLTDAEVEEAMKEAD 55
Query: 95 KNQDGRLSLEEFIE 108
++ +G + + EF++
Sbjct: 56 EDGNGVIDIPEFMD 69
Score = 30.2 bits (69), Expect = 0.046
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 FRTFDANGDGTIDFREFLCAL-SVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
F+ FDANGDG IDF EF + V + ++ A D DGNG I E +++++
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIK 72
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 49.4 bits (118), Expect = 4e-09
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 12/74 (16%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ F +D ISR E I + +++ D+++ +M
Sbjct: 23 YHAITQEFENFDTMKTNTISREEFRAICNRRV------QILTDEQ------FDRLWNEMP 70
Query: 95 KNQDGRLSLEEFIE 108
N GRL +F+
Sbjct: 71 VNAKGRLKYPDFLS 84
Score = 38.2 bits (89), Expect = 8e-05
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
F FD TI EF + + +++ ++ ++ G + +
Sbjct: 30 FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
Score = 34.0 bits (78), Expect = 0.003
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVT 29
+ ++ N G + + +FL S
Sbjct: 63 DRLWNEMPVNAKGRLKYPDFLSRFSSE 89
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 48.3 bits (116), Expect = 5e-09
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 12/74 (16%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
+ L+ AF +D DG+G+I+ +E+ + +G +P++E D + R+ D
Sbjct: 5 LEDLQVAFRAFDQDGDGHITVDEL----RRAMAGLG--QPLPQEE------LDAMIREAD 52
Query: 95 KNQDGRLSLEEFIE 108
+QDGR++ EEF
Sbjct: 53 VDQDGRVNYEEFAR 66
Score = 29.0 bits (66), Expect = 0.11
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
FR FD +GDG I E A++ + +++L D+D +G ++ E
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEE 63
Score = 28.6 bits (65), Expect = 0.17
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 7 RTFDANGDGTIDFREFL 23
R D + DG +++ EF
Sbjct: 49 READVDQDGRVNYEEFA 65
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 51.9 bits (125), Expect = 5e-09
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 16/98 (16%)
Query: 10 DANGDGTIDFREFLCA-LSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKM 68
N +DF F L + + + D + I+ I Q +
Sbjct: 355 LGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYI---RITQYL--- 408
Query: 69 VGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
D + ++ +DG+ + F
Sbjct: 409 ---------DAGGIPRTAQSEETRVWHRRDGKWQIVHF 437
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 48.7 bits (117), Expect = 5e-09
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
E++L+ AF ++D D NGYIS +E+ + + +G K+ ++E +++ ++ D
Sbjct: 8 EEELKEAFKVFDKDQNGYISASEL----RHVMINLG--EKLTDEE------VEQMIKEAD 55
Query: 95 KNQDGRLSLEEFIE 108
+ DG+++ EEF++
Sbjct: 56 LDGDGQVNYEEFVK 69
Score = 31.0 bits (71), Expect = 0.029
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 7 RTFDANGDGTIDFREFLCALSVTSRGKL---EQKLRWAFS 43
+ D +GDG +++ EF+ + G +LR FS
Sbjct: 52 KEADLDGDGQVNYEEFVKMMMTVRGGGGGNGWSRLRRKFS 91
Score = 31.0 bits (71), Expect = 0.031
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRG-KL-EQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
F+ FD + +G I E + + G KL ++++ DLDG+G ++ E ++++
Sbjct: 15 FKVFDKDQNGYISASELRHVM--INLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMM 72
Query: 64 AIYKMVGT 71
+ G
Sbjct: 73 TVRGGGGG 80
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 49.0 bits (117), Expect = 2e-08
Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 25/119 (21%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI-YK 67
D++ G + F EF +K + + +D+D +G I +E+ +A +
Sbjct: 56 MDSDTTGKLGFEEFKYLW------NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFH 109
Query: 68 MVGTVMKMPEDESTPE----------------KRTDKIFRQMDKNQDGR--LSLEEFIE 108
+ + M + E + F+ +DK+ G+ ++++E+++
Sbjct: 110 LNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQ 168
Score = 40.9 bits (96), Expect = 2e-05
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIY 66
++ G +DF F+ L + AF D DG G I N + +Y
Sbjct: 122 YSDEGGNMDFDNFISCLVR------LDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMY 172
Score = 33.2 bits (76), Expect = 0.012
Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 29/111 (26%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFS---------MYDLDGNGYISR 55
+F D + E L + + F + D D G +
Sbjct: 9 LFAQLA-GDDMEVSATE-LMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGF 66
Query: 56 NEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
E + I K I++Q D ++ G + E
Sbjct: 67 EEFKYLWNNIKKW------------------QAIYKQFDVDRSGTIGSSEL 99
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 45.3 bits (108), Expect = 1e-07
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+ + AF M+D DG G IS E+ GTVM+M T E+ D I ++D+
Sbjct: 20 AEFKAAFDMFDADGGGDISTKEL-----------GTVMRMLGQNPTKEE-LDAIIEEVDE 67
Query: 96 NQDGRLSLEEFIE 108
+ G + EEF+
Sbjct: 68 DGSGTIDFEEFLV 80
Score = 33.4 bits (77), Expect = 0.004
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
F FDA+G G I +E + + + +++L D DG+G I E L +
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM 81
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 44.9 bits (107), Expect = 2e-07
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
Q+ + AF ++D D + ++ E+ GTVM+ T +K +I + DK
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEEL-----------GTVMRALGANPTKQK-ISEIVKDYDK 61
Query: 96 NQDGRLSLEEFIE 108
+ G+ E F+
Sbjct: 62 DNSGKFDQETFLT 74
Score = 38.8 bits (91), Expect = 4e-05
Identities = 13/62 (20%), Positives = 23/62 (37%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
F+ FD + D + E + +QK+ YD D +G + L I+
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEY 79
Query: 66 YK 67
+
Sbjct: 80 GQ 81
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 44.6 bits (106), Expect = 2e-07
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
F +D +G+G IS +E+ G +K + E ++ ++D
Sbjct: 10 IADRERIFKRFDTNGDGKISSSEL-----------GDALKTLGSVTPDE--VRRMMAEID 56
Query: 95 KNQDGRLSLEEFIEGAKSDPSIVR 118
+ DG +S +EF + A+++ +V+
Sbjct: 57 TDGDGFISFDEFTDFARANRGLVK 80
Score = 38.4 bits (90), Expect = 4e-05
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNEMLEIVQ 63
+F+ FD NGDG I E AL + G + ++R + D DG+G+IS +E + +
Sbjct: 16 IFKRFDTNGDGKISSSELGDAL--KTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73
Query: 64 A 64
A
Sbjct: 74 A 74
Score = 31.1 bits (71), Expect = 0.022
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAF 42
D +GDG I F EF + L + + F
Sbjct: 56 DTDGDGFISFDEFTDFA--RANRGLVKDVSKIF 86
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 43.0 bits (102), Expect = 7e-07
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 35 EQKLRWAFSMYDL-DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
++++ AF ++ +G+ IS+ E+ ++Q + D++ +
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQ----------TLGPSLLKGMSTLDEMIEE 53
Query: 93 MDKNQDGRLSLEEFIE 108
+DKN DG +S EEF+
Sbjct: 54 VDKNGDGEVSFEEFLV 69
Score = 31.4 bits (72), Expect = 0.014
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSR 31
+ + D NGDG + F EFL + S+
Sbjct: 48 DEMIEEVDKNGDGEVSFEEFLVMMKKISQ 76
Score = 25.6 bits (57), Expect = 2.3
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 4 HVFRTFDANGD--GTIDFREFLCALSV--TSRGKLEQKLRWAFSMYDLDGNGYISRNEML 59
F F A I E + S K L D +G+G +S E L
Sbjct: 9 GAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFL 68
Query: 60 EIVQAIYK 67
+++ I +
Sbjct: 69 VMMKKISQ 76
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 43.4 bits (102), Expect = 2e-06
Identities = 10/106 (9%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
+ +D ++ + + + + +DL+GNG I +
Sbjct: 18 AQQEERLEGINKQFLDDPKYS---NDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSL---- 70
Query: 63 QAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
+++ ++ R++ + S +F+
Sbjct: 71 -------KRMLEK-LGVPKTHLELKRLIREVSSGSEETFSYSDFLR 108
Score = 34.1 bits (78), Expect = 0.005
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI 65
+ FD NG+G ID L K +L+ S ++ L ++
Sbjct: 54 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGK 113
Query: 66 YKMVGTVMKMPEDESTPEKR 85
+ ++ M E+++ KR
Sbjct: 114 RSAILRMILMYEEKNKEHKR 133
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 42.0 bits (99), Expect = 2e-06
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 35 EQKLRW--AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
+K ++ F D D +G++S E+ EI +P I+
Sbjct: 7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK--------TGLPSTL------LAHIWSL 52
Query: 93 MDKNQDGRLSLEEFI 107
D G+LS ++F
Sbjct: 53 CDTKDCGKLSKDQFA 67
Score = 35.1 bits (81), Expect = 0.001
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ +F D + DG + E + + L L +S+ D G +S+++
Sbjct: 13 DEIFLKTDKDMDGFVSGLE---VREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALA 69
Query: 62 VQAIYKMVGTVMKMPE 77
I + + + P
Sbjct: 70 FHLISQKLIKGIDPPH 85
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 42.4 bits (100), Expect = 2e-06
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 35 EQKLRW--AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
+L++ F+ +D +G+++ + I+ +P+ + I+
Sbjct: 11 SSRLKYRQLFNSHDKTMSGHLTGPQARTILMQ--------SSLPQAQ------LASIWNL 56
Query: 93 MDKNQDGRLSLEEFI 107
D +QDG+L+ EEFI
Sbjct: 57 SDIDQDGKLTAEEFI 71
Score = 34.4 bits (79), Expect = 0.003
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNE 57
+F + D G + + A ++ + L + +L +++ D+D +G ++ E
Sbjct: 17 RQLFNSHDKTMSGHLTGPQ---ARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEE 69
Score = 27.0 bits (60), Expect = 1.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
++ D + DG + EF+ A+
Sbjct: 51 ASIWNLSDIDQDGKLTAEEFILAM 74
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 42.1 bits (99), Expect = 3e-06
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 41 AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGR 100
F + D GY+++ ++ +++ K ++ +D DKI + +D+ +DG+
Sbjct: 14 TFHKFAGD-KGYLTKEDLRVLME---KEFPGFLENQKDPLA----VDKIMKDLDQCRDGK 65
Query: 101 LSLEEFI 107
+ + F
Sbjct: 66 VGFQSFF 72
Score = 32.8 bits (75), Expect = 0.007
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCAL 26
+ + + D DG + F+ F +
Sbjct: 51 VDKIMKDLDQCRDGKVGFQSFFSLI 75
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 40.9 bits (97), Expect = 4e-06
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 35 EQK--LRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
EQK ++ AF ++D + G I +E+ M+ + + ++ +
Sbjct: 4 EQKQEIKEAFDLFDTNKTGSIDYHEL-----------KVAMRALGFDVK-KPEILELMNE 51
Query: 93 MDKNQDGRLSLEEFIE 108
D+ +G + ++F++
Sbjct: 52 YDREGNGYIGFDDFLD 67
Score = 37.1 bits (87), Expect = 1e-04
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIV 62
F FD N G+ID+ E A+ + ++ + YD +GNGYI ++ L+I+
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIM 69
Score = 28.6 bits (65), Expect = 0.15
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 10 DANGDGTIDFREFLCALS 27
D G+G I F +FL ++
Sbjct: 53 DREGNGYIGFDDFLDIMT 70
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 41.6 bits (98), Expect = 4e-06
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+ + + +DL+GNG I + +++ T + K+ ++
Sbjct: 32 EGFKEKYMEFDLNGNGDIDIMSL-----------KRMLEKLGVPKTHLE-LKKLIGEVSS 79
Query: 96 NQDGRLSLEEFIE 108
S +F+
Sbjct: 80 GSGETFSYPDFLR 92
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/56 (21%), Positives = 18/56 (32%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ FD NG+G ID L K +L+ S + L +
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRM 93
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 41.3 bits (97), Expect = 5e-06
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 42 FSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRL 101
+ IS++ E++Q K + ++ + DK+ + +D N DGR+
Sbjct: 20 YVSKYSLVKNKISKSSFREMLQ---KELNHMLSDTGNRKA----ADKLIQNLDANHDGRI 72
Query: 102 SLEEFI 107
S +E+
Sbjct: 73 SFDEYW 78
Score = 31.3 bits (71), Expect = 0.022
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + + DAN DG I F E+ +
Sbjct: 58 DKLIQNLDANHDGRISFDEYWTLI 81
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 40.0 bits (94), Expect = 1e-05
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 38 LRWAFSMYDL-DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
L+ F Y +G+ +S+ E+ +++Q +++K P D +F+++DK
Sbjct: 9 LKSIFEKYAAKEGDPNQLSKEELKQLIQ---AEFPSLLKGPRT-------LDDLFQELDK 58
Query: 96 NQDGRLSLEEFI 107
N DG +S EEF
Sbjct: 59 NGDGEVSFEEFQ 70
Score = 33.9 bits (78), Expect = 0.002
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALS 27
+ +F+ D NGDG + F EF +
Sbjct: 50 DDLFQELDKNGDGEVSFEEFQVLVK 74
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 40.6 bits (95), Expect = 2e-05
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 20 REFLCALSVTSRGKLEQKLRW---AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMP 76
REFLC + L +KL + +DL+ G I + +M+
Sbjct: 31 REFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSL-----------KRMMEKL 79
Query: 77 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 108
T + K+ ++ +S +F+
Sbjct: 80 GVPKTHLE-MKKMISEVTGGVSDTISYRDFVN 110
Score = 36.0 bits (83), Expect = 8e-04
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNG 51
TI +R+F+ + GK L+ M++ N
Sbjct: 95 VTGGVSDTISYRDFVNMM----LGKRSAVLK-LVMMFEGKANE 132
Score = 33.7 bits (77), Expect = 0.006
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ + FD N +G ID + K +++ S + IS + + +
Sbjct: 53 KEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNM 111
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 39.7 bits (93), Expect = 2e-05
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 35 EQKLRW--AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
EQ+ + F D NG+I + E K+P E I+
Sbjct: 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTK--------SKLPILE------LSHIWEL 51
Query: 93 MDKNQDGRLSLEEFI 107
D ++DG L+L+EF
Sbjct: 52 SDFDKDGALTLDEFC 66
Score = 33.5 bits (77), Expect = 0.004
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNE 57
+ F+T + +G I A ++ KL +L + + D D +G ++ +E
Sbjct: 12 VNQFKTIQPDLNGFIPGSA---AKEFFTKSKLPILELSHIWELSDFDKDGALTLDE 64
Score = 27.4 bits (61), Expect = 0.59
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
H++ D + DG + EF A
Sbjct: 46 SHIWELSDFDKDGALTLDEFCAAF 69
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 40.3 bits (93), Expect = 4e-05
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 35 EQKLRWAFSMYDLDG-NGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQM 93
+ W F D +GY+S E+ + + E T + F
Sbjct: 154 IFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIP--------------MEHCTTRFFETC 199
Query: 94 DKNQDGRLSLEEF 106
D + D ++L+E+
Sbjct: 200 DLDNDKYIALDEW 212
Score = 29.9 bits (66), Expect = 0.18
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKL 38
F T D + D I E+ + + +++ L
Sbjct: 192 TTRFFETCDLDNDKYIALDEWAGCFGI-KQKDIDKDL 227
Score = 28.8 bits (63), Expect = 0.42
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 6 FRTFDANG-DGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNE 57
F D + DG + E A +E F DLD + YI+ +E
Sbjct: 161 FGQLDQHPIDGYLSHTE--LAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDE 211
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 40.2 bits (93), Expect = 5e-05
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 25/119 (21%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAI-YK 67
D +G G + +EF + QK + + D+D +G ++ EM + ++ +K
Sbjct: 584 LDEDGSGKLGLKEFYILWTKI------QKYQKIYREIDVDRSGTMNSYEMRKALEEAGFK 637
Query: 68 MVGTVMKMPEDE-STPEKRTD---------------KIFRQMDKNQDG--RLSLEEFIE 108
+ + ++ + E D KIF+Q+D G +L L ++
Sbjct: 638 LPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLS 696
Score = 30.5 bits (68), Expect = 0.13
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 11 ANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYI--SRNEMLEIV 62
A+ + IDF F+ L +LE + F D + G I L
Sbjct: 651 ADDELIIDFDNFVRCLV-----RLEILFK-IFKQLDPENTGTIQLDLISWLSFS 698
Score = 26.3 bits (57), Expect = 3.1
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 18/68 (26%)
Query: 39 RWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQD 98
+ M D DG+G + E + I K I+R++D ++
Sbjct: 578 KIMVDMLDEDGSGKLGLKEFYILWTKIQKYQK------------------IYREIDVDRS 619
Query: 99 GRLSLEEF 106
G ++ E
Sbjct: 620 GTMNSYEM 627
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 40.1 bits (93), Expect = 6e-05
Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA---- 64
D++ G + F EF + +K + + ++ D +G I NE+ +A
Sbjct: 783 MDSDTTGKLGFEEFKYLWNNI------KKWQGIYKRFETDRSGTIGSNELPGAFEAAGFH 836
Query: 65 ----IYKMVGTVMKMPEDESTPE-----------KRTDKIFRQMDKNQDG--RLSLEEFI 107
IY M+ + + ++ + + FR +DKN G +++++E++
Sbjct: 837 LNQHIYSMI--IRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWL 894
Query: 108 E 108
+
Sbjct: 895 Q 895
Score = 35.5 bits (81), Expect = 0.003
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 11 ANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVG 70
A+ + IDF F+ L +LE + F D + G I + + + ++ +
Sbjct: 653 ADDELIIDFDNFVRCLV-----RLEILFK-IFKQLDPENTGTIQLDLISWLSFSVLGKLA 706
Query: 71 TVM-----------KMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
+ + +ES E++ K+F Q+ D +S E
Sbjct: 707 AAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLA-GDDMEVSATE 751
Score = 34.0 bits (77), Expect = 0.010
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 9 FDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEM 58
D +G+G + EF + + F +DLD +G +S EM
Sbjct: 586 MDRDGNGKLGLVEFNILWNRI------RNYLTIFRKFDLDKSGSMSAYEM 629
Score = 30.5 bits (68), Expect = 0.12
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 11 ANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYI--SRNEMLEIV 62
++ G +DF F+ L +L+ R AF D +G G I + E L++
Sbjct: 850 SDETGNMDFDNFISCLV-----RLDAMFR-AFRSLDKNGTGQIQVNIQEWLQLT 897
Score = 26.7 bits (58), Expect = 2.7
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 43 SMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLS 102
++ D DGNG + E + I + IFR+ D ++ G +S
Sbjct: 584 NLMDRDGNGKLGLVEFNILWNRIRNYLT------------------IFRKFDLDKSGSMS 625
Query: 103 LEEF 106
E
Sbjct: 626 AYEM 629
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 38.2 bits (89), Expect = 8e-05
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 14/72 (19%)
Query: 36 QKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK 95
+ F D + +IS + K+ E I+ D
Sbjct: 22 EYYVNQFRSLQPDPSSFISGSVAKNFFTK--------SKLSIPE------LSYIWELSDA 67
Query: 96 NQDGRLSLEEFI 107
+ DG L+L EF
Sbjct: 68 DCDGALTLPEFC 79
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNE 57
+ FR+ + I A + ++ KL +L + + + D D +G ++ E
Sbjct: 25 VNQFRSLQPDPSSFISGSV---AKNFFTKSKLSIPELSYIWELSDADCDGALTLPE 77
Score = 25.5 bits (56), Expect = 3.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 10 DANGDGTIDFREFLCAL 26
DA+ DG + EF A
Sbjct: 66 DADCDGALTLPEFCAAF 82
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 37.1 bits (86), Expect = 2e-04
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 42 FSMY-DLDGNGY-ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG 99
F Y G+ +S+ E+ +++ K + +K +D++ D+IF+ +D NQD
Sbjct: 18 FHQYSVRKGHFDTLSKGELKQLLT---KELANTIKNIKDKAV----IDEIFQGLDANQDE 70
Query: 100 RLSLEEFI 107
++ +EFI
Sbjct: 71 QVDFQEFI 78
Score = 32.8 bits (75), Expect = 0.006
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ +F+ DAN D +DF+EF+ +
Sbjct: 58 DEIFQGLDANQDEQVDFQEFISLV 81
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 37.1 bits (86), Expect = 2e-04
Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 48 DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+G+ + ++E+ E++ + ++ +++ DK+ +D N DG +EF
Sbjct: 22 EGDKHKLKKSELKELIN---NELSHFLEEIKEQEV----VDKVMETLDSNGDGECDFQEF 74
Query: 107 I 107
+
Sbjct: 75 M 75
Score = 30.9 bits (70), Expect = 0.031
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCAL 26
+ V T D+NGDG DF+EF+ +
Sbjct: 54 VDKVMETLDSNGDGECDFQEFMAFV 78
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 37.2 bits (86), Expect = 2e-04
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 33 KLEQ---KLRWAFSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTD 87
LE+ + F Y +G+ ++++E+ E++ + + + + DE+
Sbjct: 7 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLT---RELPSWLGKRTDEAA----FQ 59
Query: 88 KIFRQMDKNQDGRLSLEEFI 107
K+ +D N+D + +E+
Sbjct: 60 KLMSNLDSNRDNEVDFQEYC 79
Score = 31.0 bits (70), Expect = 0.036
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + D+N D +DF+E+ L
Sbjct: 59 QKLMSNLDSNRDNEVDFQEYCVFL 82
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 36.7 bits (85), Expect = 2e-04
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 48 DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
DGN IS+ E L + + + +D D++ +++D + DG+L +EF
Sbjct: 26 DGNNTKISKTEFLIFMN---TELAAFTQNQKDPGV----LDRMMKKLDLDSDGQLDFQEF 78
Query: 107 I 107
+
Sbjct: 79 L 79
Score = 30.6 bits (69), Expect = 0.048
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + + D + DG +DF+EFL +
Sbjct: 59 DRMMKKLDLDSDGQLDFQEFLNLI 82
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 36.7 bits (85), Expect = 3e-04
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 42 FSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG 99
F + +G+ +S+ E+ +++Q + + + + +D DKI +++D+N DG
Sbjct: 15 FHAHSGKEGDKYKLSKKELKDLLQ---TELSSFLDVQKDADA----VDKIMKELDENGDG 67
Query: 100 RLSLEEFI 107
+ +EF+
Sbjct: 68 EVDFQEFV 75
Score = 32.5 bits (74), Expect = 0.009
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + + D NGDG +DF+EF+ +
Sbjct: 55 DKIMKELDENGDGEVDFQEFVVLV 78
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 36.3 bits (84), Expect = 4e-04
Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 48 DGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
++++E+ E++ + + + + DE+ K+ +D N+D + +E+
Sbjct: 24 GDKFKLNKSELKELLT---RELPSFLGKRTDEAA----FQKLMSNLDSNRDNEVDFQEYC 76
Score = 32.1 bits (73), Expect = 0.014
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + D+N D +DF+E+ L
Sbjct: 56 QKLMSNLDSNRDNEVDFQEYCVFL 79
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 36.3 bits (84), Expect = 4e-04
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 17/75 (22%)
Query: 35 EQKLRW--AFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQ 92
E K ++ F NG++S +++ ++ K+P D +++
Sbjct: 12 EDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLN--------SKLPVDI------LGRVWEL 56
Query: 93 MDKNQDGRLSLEEFI 107
D + DG L +EF
Sbjct: 57 SDIDHDGMLDRDEFA 71
Score = 25.9 bits (57), Expect = 2.2
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ +F + +G + + V KL L + + D+D +G + R+E
Sbjct: 18 DAIFDSLS-PVNGFLSGDK---VKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVA 73
Query: 62 VQAIYKMV 69
+ +Y +
Sbjct: 74 MFLVYCAL 81
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 35.9 bits (83), Expect = 4e-04
Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 48 DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+G+ +++ E+ +++ K + ++ +D+ DK+ + +D N D ++ EF
Sbjct: 22 EGSTQTLTKGELKVLME---KELPGFLQSGKDKDA----VDKLLKDLDANGDAQVDFSEF 74
Query: 107 I 107
I
Sbjct: 75 I 75
Score = 31.3 bits (71), Expect = 0.025
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + + DANGD +DF EF+ +
Sbjct: 55 DKLLKDLDANGDAQVDFSEFIVFV 78
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 37.2 bits (85), Expect = 6e-04
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 27 SVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRT 86
S+ R KL+ + D + + ++ E+ + ++ + + +
Sbjct: 2 SMDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKEL------------NIQVDDGYA 49
Query: 87 DKIFRQMDKNQDGRLSLEEFIE 108
KIFR+ D +Q L EE
Sbjct: 50 RKIFRECDHSQTDSLEDEEIET 71
Score = 35.3 bits (80), Expect = 0.003
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 5 VFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQA 64
R D N D ++F+E L + + R F D + E+ +
Sbjct: 16 CLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKM 75
Query: 65 I 65
+
Sbjct: 76 L 76
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 36.1 bits (83), Expect = 6e-04
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 41 AFSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQD 98
F Y +G+ ++++E+ E++ + + + + DE+ K+ +D N+D
Sbjct: 27 TFHKYSGKEGDKFKLNKSELKELLT---RELPSFLGKRTDEAAF----QKLMSNLDSNRD 79
Query: 99 GRLSLEEFI 107
+ +E+
Sbjct: 80 NEVDFQEYC 88
Score = 31.4 bits (71), Expect = 0.030
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + D+N D +DF+E+ L
Sbjct: 68 QKLMSNLDSNRDNEVDFQEYCVFL 91
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 36.5 bits (84), Expect = 6e-04
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 22/110 (20%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEI 61
+ + +G +D EF K + F G + +++ +
Sbjct: 48 CRSLVALMELKVNGRLDQEEFARLW------KRLVHYQHVFQKVQ-TSPGVLLSSDLWKA 100
Query: 62 VQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDK---NQDGRLSLEEFIE 108
++ + G + ++ + + GR+S +
Sbjct: 101 IENTDFLRG------------IFISRELLHLVTLRYSDSVGRVSFPSLVC 138
Score = 34.9 bits (80), Expect = 0.003
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNG-YISRNEMLEIV 62
++ G + F +C L + + F DG G Y++ E + +V
Sbjct: 124 YSDSVGRVSFPSLVCFLMRL------EAMAKTFRNLSKDGKGLYLTEMEWMSLV 171
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 35.6 bits (82), Expect = 7e-04
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 42 FSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG 99
F Y +G+ +S+ E+ E++ + + +D +KI +D N+D
Sbjct: 16 FHNYSGSEGDKYKLSKGELKELLN---AELTDFLMSQKDPMLV----EKIMNDLDSNKDN 68
Query: 100 RLSLEEFI 107
+ EF+
Sbjct: 69 EVDFNEFV 76
Score = 31.3 bits (71), Expect = 0.025
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCAL 26
E + D+N D +DF EF+ +
Sbjct: 55 VEKIMNDLDSNKDNEVDFNEFVVLV 79
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 34.4 bits (79), Expect = 0.002
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 42 FSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG 99
F Y +G+ +S+ EM E++ K + + + DE K+ +D+N D
Sbjct: 17 FHKYSSQEGDKFKLSKGEMKELLH---KELPSFVGEKVDEEG----LKKLMGSLDENSDQ 69
Query: 100 RLSLEEFI 107
++ +E+
Sbjct: 70 QVDFQEYA 77
Score = 31.0 bits (70), Expect = 0.039
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ + + D N D +DF+E+ L
Sbjct: 57 KKLMGSLDENSDQQVDFQEYAVFL 80
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 34.0 bits (78), Expect = 0.002
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 51 GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 107
I + +L +++ + + + +F + DKN+D ++ EF+
Sbjct: 24 DKIDKPSLLTMMK---ENFPNFLSACDK--KGTNYLADVFEKKDKNEDKKIDFSEFL 75
Score = 32.4 bits (74), Expect = 0.009
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
VF D N D IDF EFL L
Sbjct: 55 ADVFEKKDKNEDKKIDFSEFLSLL 78
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 34.1 bits (78), Expect = 0.003
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 48 DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
G+ +++ E E+V+ K + +K E+ EK + I +D N D +LS EEF
Sbjct: 25 LGHPDTLNQGEFKELVR---KDLQNFLK---KENKNEKVIEHIMEDLDTNADKQLSFEEF 78
Query: 107 I 107
I
Sbjct: 79 I 79
Score = 31.8 bits (72), Expect = 0.021
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
EH+ D N D + F EF+ +
Sbjct: 59 EHIMEDLDTNADKQLSFEEFIMLM 82
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 33.2 bits (76), Expect = 0.004
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 48 DGNG-YISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
GN + R+++ ++++ ++ +K D F+++D N DG ++ +EF
Sbjct: 23 KGNFHAVYRDDLKKLLE---TESPQYIR--------KKGADVWFKELDINTDGAVNFQEF 71
Query: 107 I 107
+
Sbjct: 72 L 72
Score = 32.8 bits (75), Expect = 0.008
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 FAEHVFRTFDANGDGTIDFREFLCAL 26
A+ F+ D N DG ++F+EFL +
Sbjct: 50 GADVWFKELDINTDGAVNFQEFLILV 75
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 33.6 bits (77), Expect = 0.004
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 42 FSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG 99
F + +G +S NE E+V + + ++K D+ + +D NQD
Sbjct: 28 FFTFARQEGRKDSLSVNEFKELVT---QQLPHLLKDVGSL-------DEKMKSLDVNQDS 77
Query: 100 RLSLEEFI 107
L E+
Sbjct: 78 ELKFNEYW 85
Score = 32.5 bits (74), Expect = 0.012
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ ++ D N D + F E+ +
Sbjct: 65 DEKMKSLDVNQDSELKFNEYWRLI 88
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 33.3 bits (76), Expect = 0.005
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 48 DGNGY-ISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
G+ Y + + E+ E++Q K + T E +K +D N+D + E+
Sbjct: 23 CGDKYKLCQAELKELLQ---KELATWTPTEFRECD----YNKFMSVLDTNKDCEVDFVEY 75
Query: 107 I 107
+
Sbjct: 76 V 76
Score = 31.8 bits (72), Expect = 0.018
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
D N D +DF E++ +L
Sbjct: 56 NKFMSVLDTNKDCEVDFVEYVRSL 79
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 34.1 bits (77), Expect = 0.005
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 21 EFLCALSVTSRGKLEQKLRWAFSMYDLDG-NGYISRNEMLEIVQAIYKMVGTVMKMPEDE 79
E L + + W F D +GY+S E+ + +
Sbjct: 62 ELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIP------------ 109
Query: 80 STPEKRTDKIFRQMDKNQDGRLSLEEF 106
E T + F D + D ++L+E+
Sbjct: 110 --MEHCTTRFFETCDLDNDKYIALDEW 134
Score = 25.2 bits (54), Expect = 6.4
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 6 FRTFDANGDGTIDFREFLCALSVTSRGKLEQKL 38
F T D + D I E+ + + +++ L
Sbjct: 118 FETCDLDNDKYIALDEWAGCFGIKQK-DIDKDL 149
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 32.8 bits (75), Expect = 0.006
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 48 DGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 106
+G+ +SR E+ E+++ + ES+ D + + +DKN D + +E+
Sbjct: 23 EGSKLTLSRKELKELIKK------ELCLGEMKESS----IDDLMKSLDKNSDQEIDFKEY 72
Query: 107 I 107
Sbjct: 73 S 73
Score = 30.9 bits (70), Expect = 0.030
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 2 AEHVFRTFDANGDGTIDFREFLCAL 26
+ + ++ D N D IDF+E+ L
Sbjct: 52 IDDLMKSLDKNSDQEIDFKEYSVFL 76
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 33.3 bits (76), Expect = 0.006
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 15/66 (22%)
Query: 42 FSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRL 101
F +G+I+ ++ +P+ +I+ D N DGR+
Sbjct: 39 FHSLK-PISGFITGDQARNFFFQ--------SGLPQPV------LAQIWALADMNNDGRM 83
Query: 102 SLEEFI 107
EF
Sbjct: 84 DQVEFS 89
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
++ D N DG +D EF A+
Sbjct: 69 AQIWALADMNNDGRMDQVEFSIAM 92
Score = 26.0 bits (57), Expect = 2.6
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKL-EQKLRWAFSMYDLDGNGYISRNE 57
+ F + G I + A + + L + L +++ D++ +G + + E
Sbjct: 36 DQQFHSLK-PISGFITGDQ---ARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVE 87
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural
genomics, PSI, protein structure initiative; NMR {Homo
sapiens} SCOP: a.39.1.7
Length = 118
Score = 33.1 bits (75), Expect = 0.008
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 1 FAEHVFRTFDAN--------GDGTIDFREFLCALSVTSRGKLEQKLRWA 41
+ +F++F+ + + C S+ G+ E KL W+
Sbjct: 70 LSLALFQSFETGHCLNETNVTKDVVCLNDVSCYFSLLEGGRPEDKLEWS 118
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 31.7 bits (72), Expect = 0.017
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK-LRWAFSMYDLDGNGYISRNE 57
E +R +A G + + A + + L L + + D DG G +S+ E
Sbjct: 14 EKYYRQVEAGNTGRVLALD---AAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQE 66
Score = 29.4 bits (66), Expect = 0.13
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 42 FSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRL 101
+ + G + + ++ P+ KI+ D + G L
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKK--------------SGLPDLILGKIWDLADTDGKGVL 62
Query: 102 SLEEFI 107
S +EF
Sbjct: 63 SKQEFF 68
Score = 28.6 bits (64), Expect = 0.22
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 75 MPEDESTPEKRT-DKIFRQMDKNQDGRLSLEEFIE 108
+ + + +K +RQ++ GR+ +
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAA 35
Score = 24.8 bits (54), Expect = 5.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 10 DANGDGTIDFREFLCAL 26
D +G G + +EF AL
Sbjct: 55 DTDGKGVLSKQEFFVAL 71
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 31.7 bits (72), Expect = 0.017
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 3 EHVFRTFDANGDGTIDFREFLCAL 26
+ D N D ++F+E++ L
Sbjct: 54 ARLMEDLDRNKDQEVNFQEYVTFL 77
Score = 30.9 bits (70), Expect = 0.035
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 42 FSMY-DLDGN-GYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDG 99
F Y +G+ +S+ E+ E++Q ++ + ++ +D+N+D
Sbjct: 16 FHKYSGREGDKHTLSKKELKELIQK---------ELTIGSKLQDAEIARLMEDLDRNKDQ 66
Query: 100 RLSLEEFI 107
++ +E++
Sbjct: 67 EVNFQEYV 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.018
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 63 QAIYKMVGTVMKMPEDESTP 82
QA+ K+ + +K+ D+S P
Sbjct: 20 QALKKLQAS-LKLYADDSAP 38
Score = 26.8 bits (58), Expect = 1.8
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 33 KLEQKLRWAFSMYDLDGNGYISRNEMLE 60
KL+ L+ +Y D ++ +E
Sbjct: 24 KLQASLK----LYADDSAPALAIKATME 47
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 32.0 bits (72), Expect = 0.023
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 10 DANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYK 67
G G ++F E L +G + ++ F+ YD DG+ ++ +E ++ + K
Sbjct: 56 LRQGGGKLNFDELRQDLK--GKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLEK 111
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.4 bits (71), Expect = 0.032
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 42 FSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRL 101
F NG I+ + + K+P KI++ D ++DG L
Sbjct: 57 FYTLS-PVNGKITGANAKKEMVK--------SKLPNTV------LGKIWKLADVDKDGLL 101
Query: 102 SLEEFI 107
EEF
Sbjct: 102 DDEEFA 107
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 28.1 bits (62), Expect = 0.60
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
G+ M EDE + I + MD + +G + +EE
Sbjct: 1 GSHMASSEDEKLSFEAVRNIHKLMDDDANGDVDVEE 36
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 27.7 bits (61), Expect = 0.76
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 70 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEE 105
G+ M E++ + I +QMD ++DG + +EE
Sbjct: 1 GSHMASTEEDRFSLEALQTIHKQMDDDKDGGIEVEE 36
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
tumefaciens} PDB: 2hp3_A*
Length = 466
Score = 26.6 bits (59), Expect = 2.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 97 QDGRLSLEEFIEGAKSDPSIVRLLQ 121
DG +SL F P++ ++
Sbjct: 354 LDGEVSLASFEIEHLDRPAMRAAMK 378
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 2.8
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 19/79 (24%)
Query: 35 EQKLRWAFSMYDLDGNGYISRNEMLEIVQAIYKMVGTVMKMPEDESTPEKRTDKIFRQMD 94
EQ+ R +LD + E E +A + E +++++++ +
Sbjct: 93 EQRKRLQ----ELDAASKVMEQEWRE--KAK----------KDLEEWNQRQSEQVEKNKI 136
Query: 95 KNQDGRLSLEEFIEGAKSD 113
N R++ + F + +D
Sbjct: 137 NN---RIADKAFYQQPDAD 152
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 26.4 bits (57), Expect = 3.8
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 3 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLRWAFSMYDLDGNGYISRNEMLE 60
F FD G +D +F L E + S+ D + G ++ ++
Sbjct: 728 RASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFID 785
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric
acid cycle structural genomics target, NYSGXRC, PSI;
2.70A {Escherichia coli} SCOP: e.44.1.1
Length = 483
Score = 26.2 bits (57), Expect = 4.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 98 DGRLSLEEFIEGAKSDPSIVRLLQ 121
GRL+ ++ + D I L +
Sbjct: 358 FGRLTAADYEDNVAQDKRIDALRE 381
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium
meliloti} PDB: 3ju2_A
Length = 275
Score = 25.1 bits (55), Expect = 6.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 13 GDGTIDFREFLCAL 26
GDG ID + +
Sbjct: 223 GDGVIDLKGIRRRI 236
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM barrel;
2.30A {Alicyclobacillus acidocaldarius subsp}
Length = 281
Score = 25.1 bits (55), Expect = 7.6
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 13 GDGTIDFREFLCAL 26
GDG I FL L
Sbjct: 225 GDGRIPLVPFLRGL 238
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 25.1 bits (54), Expect = 8.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 82 PEKRTDKIFRQMDKNQDGRLSLEEFI 107
P +I++ D ++DG L EEF
Sbjct: 489 PNSVLGRIWKLSDVDRDGMLDDEEFA 514
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for
structural genomics, JCSG; 2.12A {Bacteroides fragilis
nctc 9343}
Length = 430
Score = 25.0 bits (54), Expect = 8.7
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 51 GYISRNEMLEIVQAIYKMVGTVMKMP 76
GY+SR E L ++ K+VG + K
Sbjct: 81 GYVSREEGLRRME---KIVGFLEKAD 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,992,827
Number of extensions: 109170
Number of successful extensions: 1500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 540
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)