BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15328
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
Length = 193
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 41/41 (100%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
EIQEWYKGFL+DCP+GHLS+EEFKKIYGNFFPYGDASK+++
Sbjct: 26 EIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAE 66
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo
Form
Length = 190
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+Q+WYKGF KDCP+GHL+ EF+KIY FFP+GD S +++
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAE 66
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q+WYKGF+KDCP+G L F+KIY FFP+GD +K++
Sbjct: 26 EVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFA 65
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
EIQ+W+KGFL+DCP+G L+ E+F KIY FFP+G ++
Sbjct: 26 EIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFA 65
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q Y+GF +CP+G ++ E FK+IY FFP+GDAS Y+
Sbjct: 52 ELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYA 91
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q Y+GF +CP+G ++ + FK+IY FFP+GDAS Y+
Sbjct: 16 ELQVLYRGFKNECPSGVVNEDTFKQIYAQFFPHGDASTYA 55
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q Y+GF +CP+G ++ + FK+IY FFP+GDAS Y+
Sbjct: 16 ELQVLYRGFKNECPSGVVNEDTFKQIYAQFFPHGDASTYA 55
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLKDCPTG ++ ++F+ IY FFP D Y++
Sbjct: 34 ELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQ 74
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLK+CP+G ++ +EF+ IY FFP D Y++
Sbjct: 26 ELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQ 66
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLK+CP+G ++ +EF+ IY FFP D Y++
Sbjct: 26 ELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQ 66
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLK+CP+G ++ +EF+ IY FFP D Y++
Sbjct: 27 ELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQ 67
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLK+CP+G ++ +EF+ IY FFP D Y++
Sbjct: 26 ELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQ 66
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLK+CP+G ++ +EF+ IY FFP D Y++
Sbjct: 26 ELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQ 66
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With
Calcium Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium
Sensor In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr,
22 Structures
Length = 201
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+ WY+ FLK+CP+G ++ +EF+ IY FFP D Y++
Sbjct: 26 ELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQ 66
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q Y+GF +CP+G ++ E FK+IY FFP GD++ Y+
Sbjct: 65 ELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYA 104
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q Y+GF +CPTG + + FK IY FFP GDA+ Y+
Sbjct: 92 ELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYA 131
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And
Kv4.2 N1-30
Length = 183
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q Y+GF + P+G ++ E FK+IY FFP+GDAS Y+
Sbjct: 19 ELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYA 58
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIY 61
A++QEWYK FL++CP+G L + EFK+ +
Sbjct: 22 AQLQEWYKKFLEECPSGTLFMHEFKRFF 49
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1
With Calcium Bound
Length = 198
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYG--NFFPYGDASKY 73
E +WYK F+ +CP+G L++ EFK+ +G N P A+KY
Sbjct: 14 TECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSP--SANKY 53
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYG 62
E WY+ F+ + P+G ++ EFK + G
Sbjct: 20 ETHVWYRTFMMEYPSGLQTLHEFKTLLG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,492,766
Number of Sequences: 62578
Number of extensions: 74889
Number of successful extensions: 294
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 23
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)