RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15328
(76 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 35.0 bits (81), Expect = 0.001
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 35 EIQEWYKGFLKDCP--TGHLSVEEFKKIYGNFFPYG 68
+IQE + F G + E KI +
Sbjct: 18 QIQELKEAFQLFDRDSDGLIDRNELGKIL-RSLGFN 52
>gnl|CDD|219184 pfam06807, Clp1, Pre-mRNA cleavage complex II protein Clp1. This
family consists of several pre-mRNA cleavage complex II
Clp1 (or HeaB) proteins. Six different protein factors
are required in vitro for 3' end formation of mammalian
pre-mRNAs by endonucleolytic cleavage and
polyadenylation. Clp1 is a subunit of cleavage complex
IIA, which is required for cleavage, but not for
polyadenylation of pre-mRNA.
Length = 188
Score = 28.8 bits (65), Expect = 0.16
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 22 ERGREGRDGRRDAEIQEWYKGFLKDCPTGHLSVEEFKKIY 61
ER ++ R RD I E++ G L + H + +F +
Sbjct: 58 ERSKKYRRIIRDLRILEYFYGTLPMPLSPHSFLVKFSDVT 97
>gnl|CDD|197259 cd09162, PLDc_CLS_unchar1_2, Putative catalytic domain, repeat 2,
of uncharacterized proteins similar to bacterial
cardiolipin synthase. Putative catalytic domain, repeat
2, of uncharacterized proteins similar to bacterial
cardiolipin (CL) synthases, which catalyze the
reversible phosphatidyl group transfer between two
phosphatidylglycerol molecules to form CL and glycerol.
Members of this subfamily contain two HKD motifs
(H-x-K-x(4)-D, where x represents any amino acid
residue) that characterizes the phospholipase D (PLD)
superfamily. The two motifs may be part of the active
site and may be involved in phosphatidyl group transfer.
Length = 172
Score = 28.0 bits (63), Expect = 0.35
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFF 65
E+ +W + + C G + I
Sbjct: 134 KELSDWIESLISQCTEGAPPPSALRDIAEGLM 165
>gnl|CDD|224639 COG1725, COG1725, Predicted transcriptional regulators
[Transcription].
Length = 125
Score = 26.5 bits (59), Expect = 1.1
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 22 ERGREGRDGRRDAEIQEWYKGFLKDCPTGHLSVEEFKKI 60
E +E D + +E + F+++ LS+EE ++
Sbjct: 77 EDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILEL 115
>gnl|CDD|222842 PHA01972, PHA01972, structural protein.
Length = 828
Score = 26.4 bits (58), Expect = 1.5
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 11 GAKGWNSGTKLERGREGRDGRRDAEIQEWY 40
AKGW T+ R R G E+ +W
Sbjct: 189 AAKGWKKVTEDLRARFNDAGGDIGELDDWR 218
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 25.6 bits (56), Expect = 2.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 12 AKGWNSGTKLERGREGRDGRRDA 34
A+ SG L+ GR R G DA
Sbjct: 376 AQTRMSGINLDNGRMIRKGAVDA 398
>gnl|CDD|213859 TIGR03767, P_acnes_RR, metallophosphoesterase, PPA1498 family.
This model describes a small collection of probable
metallophosphoresterases, related to pfam00149 but with
long inserts separating some of the shared motifs such
that the homology is apparent only through multiple
sequence alignment. Members of this protein family, in
general, have a Sec-independent TAT (twin-arginine
translocation) signal sequence, N-terminal to the
region modeled by This model. Members include
YP_056203.1 from Propionibacterium acnes KPA171202.
Length = 496
Score = 25.6 bits (56), Expect = 2.7
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 19 TKLERGREGRDGRRDA 34
T+L R GR RR
Sbjct: 18 TELADARAGRADRRTG 33
>gnl|CDD|215783 pfam00199, Catalase, Catalase.
Length = 383
Score = 24.9 bits (55), Expect = 4.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 61 YGNFFPYGDASKYSK 75
+G F GDAS +K
Sbjct: 55 FGTFEVTGDASDLTK 69
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 24.7 bits (54), Expect = 5.7
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 4 WSKGWNSGAKGWNSGTKLERGREGRDGRRDAEIQEWYKGFL 44
W+ W+ G+ W ER R D E ++ FL
Sbjct: 251 WTGAWSDGSPEWRFIDPDERARLQLQFEEDGEFWMSFEDFL 291
>gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 443
Score = 24.6 bits (54), Expect = 6.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 2 ELWSKGWNSGAKGWNSGT 19
+ GW S + + GT
Sbjct: 31 WEDNFGWESQGQRFQGGT 48
>gnl|CDD|132780 cd06870, PX_CISK, The phosphoinositide binding Phox Homology
Domain of Cytokine-Independent Survival Kinase. The PX
domain is a phosphoinositide (PI) binding module
present in many proteins with diverse functions.
Cytokine-independent survival kinase (CISK), also
called Serum- and Glucocorticoid-induced Kinase 3
(SGK3), plays a role in cell growth and survival. It is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. CISK/SGK3 also regulates many
transporters, ion channels, and receptors. It plays a
critical role in hair follicle morphogenesis and hair
cycling. N-terminal to a catalytic kinase domain, CISK
contains a PX domain which binds highly phosphorylated
PIs, directs membrane localization, and regulates the
enzyme's activity.
Length = 109
Score = 23.9 bits (52), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 31 RRDAEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFF 65
RR AE + Y+ K P +L + K+++GN F
Sbjct: 38 RRYAEFDKLYESLKKQFPASNLKIPG-KRLFGNNF 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.137 0.454
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,963,956
Number of extensions: 298214
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 12
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)