RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15328
(76 letters)
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 64.4 bits (157), Expect = 1e-14
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSKD 76
E WY+ F+ + P+G ++ EFK + G A+K+
Sbjct: 20 ETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQ 61
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 62.9 bits (153), Expect = 4e-14
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSKD 76
E +WYK F+ +CP+G L++ EFK+ +G A+KY +
Sbjct: 14 TECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQ 56
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 62.2 bits (151), Expect = 8e-14
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+Q Y+GF +CP+G ++ E FK+IY FFP GD++ Y+
Sbjct: 65 ELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAH 105
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 61.4 bits (149), Expect = 1e-13
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
EIQ+W+KGFL+DCP+G L+ E+F KIY FFP+G +
Sbjct: 25 REIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDF 64
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos
taurus} SCOP: a.39.1.5
Length = 193
Score = 61.0 bits (148), Expect = 2e-13
Identities = 35/39 (89%), Positives = 39/39 (100%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
EIQEWYKGFL+DCP+GHLS+EEFKKIYGNFFPYGDASK+
Sbjct: 26 EIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKF 64
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on
protein STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 60.8 bits (147), Expect = 2e-13
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
E+ WY+ FLKDCPTG ++ ++F+ IY FFP D Y
Sbjct: 34 ELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAY 72
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal
binding protein; HET: MYR; NMR {Schizosaccharomyces
pombe}
Length = 190
Score = 59.4 bits (144), Expect = 5e-13
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
E+Q+WYKGF KDCP+GHL+ EF+KIY FFP+GD S +
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAF 64
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 58.7 bits (142), Expect = 1e-12
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYS 74
E+Q+WYKGF+KDCP+G L F+KIY FFP+GD +K++
Sbjct: 25 KEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFA 65
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 57.5 bits (139), Expect = 3e-12
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
E+Q Y+GF + P+G ++ E FK+IY FFP+GDAS Y
Sbjct: 18 RELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTY 57
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 57.1 bits (138), Expect = 5e-12
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSKD 76
A++QEWYK FL++CP+G L + EFK+ + +A++Y +
Sbjct: 22 AQLQEWYKKFLEECPSGTLFMHEFKRFFK-VPDNEEATQYVEA 63
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens}
SCOP: a.39.1.5
Length = 224
Score = 54.6 bits (131), Expect = 5e-11
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
E+Q Y+GF +CP+G ++ E FK+IY FFP+GDAS Y+
Sbjct: 52 ELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAH 92
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 53.9 bits (129), Expect = 1e-10
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 35 EIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
E+Q Y+GF +CPTG + + FK IY FFP GDA+ Y
Sbjct: 92 ELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTY 130
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR
{Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A
1y1a_A*
Length = 183
Score = 45.1 bits (107), Expect = 1e-07
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNF-----FPYGDASKYSK 75
EI ++ F + P SVE + F P A+ + +
Sbjct: 17 QEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKE 63
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound
to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A
{Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 44.0 bits (104), Expect = 4e-07
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 35 EIQEWYKGFLKDCPT----GHLSVEEFKKIYGNFFPYGDASKYSK 75
E++ Y+ F K + G + EEF+ F + ++
Sbjct: 35 EVEALYELFKKLSSSIIDDGLIHKEEFQLAL--FRNRNRRNLFAD 77
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 42.1 bits (99), Expect = 2e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 35 EIQEWYKGFLKDCPT----GHLSVEEFKKIYGNFFPYGDASKY 73
EI+ Y+ F K G ++ EEF+ F S +
Sbjct: 46 EIEALYELFKKISSAVIDDGLINKEEFQ--LALFKTNKKESLF 86
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 40.6 bits (95), Expect = 7e-06
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKIYGNF-----FPYGDASKYSK 75
EI ++ F + P SVE + F P A+ + +
Sbjct: 48 QEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKE 94
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein;
2.20A {Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 39.0 bits (91), Expect = 2e-05
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 33 DAEIQEWYKGF--LKDCPTGHLSVEEFKKI 60
++I Y F L G LS E+F++I
Sbjct: 25 HSQITRLYSRFTSLDKGENGTLSREDFQRI 54
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous
protein, calcium-binding protein, NHE1 regulating
protein; 2.70A {Homo sapiens}
Length = 202
Score = 31.6 bits (72), Expect = 0.011
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 33 DAEIQEWYKGF--LKDCPTGHLSVEEFKKI 60
A + + F L G+LS + ++I
Sbjct: 25 QASLLRLHHRFRALDRNKKGYLSRMDLQQI 54
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 27.5 bits (61), Expect = 0.36
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 30 GRRDAEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDAS 71
G ++ + ++ E F +++ +F D
Sbjct: 139 GIPKSDCDAAFDTLSDGG-KTMVTREIFARLWTEYFVSNDRG 179
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc,
structural genomics, PSI, protein structure initiative;
NMR {Homo sapiens} SCOP: a.39.1.7
Length = 118
Score = 26.2 bits (57), Expect = 0.78
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 35 EIQEWYKGF-----LKDCPTGHLSVEEFKKIYGNFFPYGDASK 72
++ + K F K + E F++ + + +
Sbjct: 26 KVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPR 68
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 26.0 bits (57), Expect = 0.99
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 30 GRRDAEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYGDAS 71
+ A++ Y + +K++Y A
Sbjct: 135 QLQCADVPAVYNVITDG-GKVTFDLNRYKELYYRLLTSPAAD 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.1
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 55 EEFKKIYGNFFPYGDAS 71
+ KK+ + Y D S
Sbjct: 20 QALKKLQASLKLYADDS 36
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: FAD; 2.20A {Bacteroides
thetaiotaomicron} SCOP: b.45.1.1
Length = 178
Score = 25.2 bits (55), Expect = 1.9
Identities = 3/40 (7%), Positives = 10/40 (25%), Gaps = 7/40 (17%)
Query: 31 RRDAEI--QEWYKGFLKDCPTGHLSVEEFKKIYGNFFPYG 68
+ I ++ + + + + PY
Sbjct: 20 MKTIVIEDKQRIESIILQADACFVGI-----TDLEGNPYV 54
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 25.3 bits (56), Expect = 2.1
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 12 AKGWNSGTKLERGREGRDGRRDA-EI 36
+ GR G G+R+ I
Sbjct: 197 GRNIMLKNVSVNGRSGHTGKREKGTI 222
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2,
structura genomics, PSI, protein structure initiative;
3.00A {Pseudomonas aeruginosa}
Length = 428
Score = 25.0 bits (55), Expect = 2.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 34 AEIQEWYKGFLKDCPTGHLSVEEFKKI 60
AE+ + FLK PT + +
Sbjct: 2 AELNQGLIDFLKASPTPFHATASLARR 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.9
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 39 WYKGF-LKDCPTGHLSVEEFKKIYGNF 64
+ G LK+ + F+ ++ +F
Sbjct: 475 SHIGHHLKNIEHPER-MTLFRMVFLDF 500
>3odh_A Okrai endonuclease; alpha and beta proteins (A/B), restriction
endonuclease-like phosphodiesterase; HET: DNA; 2.30A
{Oceanobacter kriegii}
Length = 194
Score = 24.7 bits (53), Expect = 3.7
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 13 KGWNSGTKLERGREGRDGRRDAEIQEWYKGFLKDCPTGHLS 53
KGW + E R G DA K F + TG++S
Sbjct: 66 KGWALEHPVRIKAEMRPGPLDAVKMIGGKAFALEWETGNIS 106
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 24.5 bits (54), Expect = 4.0
Identities = 7/26 (26%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 12 AKGWNSGTKLERGREGRDGRRDA-EI 36
A + REG G R I
Sbjct: 181 ALDKDLKDCAVYSREGHTGERVPGTI 206
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease,
hydrolase, magnesium, metal nonsense-mediated mRNA
decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Length = 507
Score = 24.6 bits (52), Expect = 4.1
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 40 YKGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKY 73
F P + EFK++ FP +K
Sbjct: 292 IHQFYCPLPA---DLNEFKEMAICVFPRLLDTKL 322
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 24.1 bits (53), Expect = 5.9
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 12 AKGWNSGTKLERGREGRDGRRDA-EI 36
A G + GR G G RD I
Sbjct: 182 ATGRSLDDCAVYGRHGVTGERDPSTI 207
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 23.8 bits (52), Expect = 6.3
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 41 KGFLKDCPTGHLSVEEFKKIYGNFFPYGDASKYSK 75
K F K ++ +KI + D K++
Sbjct: 421 KEFDKGKNQNIMTDAHIEKILNAYKSREDIDKFAH 455
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 23.6 bits (51), Expect = 8.9
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 30 GRRDAEIQEWYKGFLKDCPTGHLSVEEFKKIYGNFF 65
G AE E + + G LS++E +F
Sbjct: 132 GMSKAEAAEAFNQVDTNG-NGELSLDELLTAVRDFH 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.137 0.454
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,270,980
Number of extensions: 60302
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 38
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)