BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15330
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQN 59
MV +VMKMPEDESTPEKRT+KIFRQMD N+DG+LSLEEFI GAKSDPSIVRLLQCDP +
Sbjct: 131 MVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSS 189
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 45/53 (84%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 53
MVG+++K+PEDE TPEKR +KIF MDKN+DG+L+LEEF EG+K DP+IV L
Sbjct: 131 MVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSAL 183
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 45/53 (84%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 53
MVG +++PE+E+TPEKR D+IF MDKN DG+L+L+EF EG+K+DPSIV+ L
Sbjct: 131 MVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQAL 183
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 15 PEKRTDKIFRQMDKNQDGRLSLEEFIEG 42
P K +F D+N+DGR+ EFI+
Sbjct: 61 PTKFATFVFNVFDENKDGRIEFSEFIQA 88
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 42/54 (77%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
M+G+++ + EDE+TPE R KIF+ MDKN+DG ++L+EF EG+K DPSI+ L
Sbjct: 131 MMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALN 184
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 55.8 bits (133), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 39/51 (76%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 58
+P+DE+TPEKR +KI++ KN D +L+ +EFIEG ++ I+RL+Q +PQ
Sbjct: 148 LPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQFEPQ 198
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
++ P+ +FR D N DG L +E++
Sbjct: 66 DTDPKAYAQHVFRSFDSNLDGTLDFKEYV 94
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 58
+PEDE+TPEKR +KI+ K D +L+ +EFIEG ++ I+RL+Q +PQ
Sbjct: 141 LPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQ 191
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ P+ +FR D N DG L +E++
Sbjct: 59 EADPKAYAQHVFRSFDANSDGTLDFKEYV 87
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 58
+PEDE+TPEKR +KI+ K D +L+ +EFIEG ++ I+RL+Q +PQ
Sbjct: 140 LPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQ 190
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ P+ +FR D N DG L ++++
Sbjct: 58 EADPKAYAQHVFRSFDANSDGTLDFKQYV 86
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 58
+PEDE+TPEKR +KI+ K D +L+ +EFIEG ++ I+RL+Q +PQ
Sbjct: 140 LPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQ 190
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ P+ +FR D N DG L +E++
Sbjct: 58 EADPKAYAQHVFRSFDANSDGTLDFKEYV 86
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 58
+PEDE+TPEKR +KI+ K D +L+ +EFIEG ++ I+RL+Q +PQ
Sbjct: 140 LPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQ 190
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ P+ +FR D N DG L ++++
Sbjct: 58 EADPKAYAQHVFRSFDANSDGTLDFKQYV 86
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQ 58
+PEDE+TPEKR +KI+ K D +L+ +EFIEG ++ I+RL+Q +PQ
Sbjct: 140 LPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEPQ 190
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ P+ +FR D N DG L +E++
Sbjct: 58 EADPKAYAQHVFRSFDANSDGTLDFKEYV 86
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCD 56
TPE+ D+IF +D+N DG+LSL EF+EGA+ D ++++LQ D
Sbjct: 145 TPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQMD 187
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 8 MPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDP 57
+PEDE+TPEKR +KI+ K D +L+ +EFIEG ++ I+RL+Q +P
Sbjct: 140 LPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQFEP 189
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ P+ +FR D N DG L +E++
Sbjct: 58 EADPKAYAQHVFRSFDANSDGTLDFKEYV 86
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
M+G E TP + D F++MDKN+DG ++L+EF+E + D +I+R LQ
Sbjct: 121 MMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQ 174
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
E TP + D F++MDKN+DG ++L+EF+E + D +I+R LQ
Sbjct: 132 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQ 174
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQC 55
E TP + D F++MDKN+DG ++L+EF+E + D +I+R LQ
Sbjct: 135 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQL 178
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
E TP + D F++MDKN+DG ++L+EF+E + D +I+R LQ
Sbjct: 168 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQ 210
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
E P + + F++MDKN+DG ++++EFIE + D +I+R +Q
Sbjct: 181 EDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQ 223
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
E P + ++ F +MD+NQDG +++EEF+E + D +I+ +Q
Sbjct: 52 EDAPAEHVERFFEKMDRNQDGVVTIEEFLEACQKDENIMSSMQ 94
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 53
T E+ T+ +F ++D N DG LSLEEF+EG + D ++ +L
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDIL 167
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQ 54
E P + ++ F++MD+NQDG ++++EF+E + D +I+ +Q
Sbjct: 208 EDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQ 250
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLL 53
+PE+ + +F ++D N DG L+LEEFI G D ++ ++
Sbjct: 132 SPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIV 171
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
K +IFRQ+D N DG+L +E IEG +
Sbjct: 314 KELTQIFRQLDNNGDGQLDRKELIEGYR 341
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 21 KIFRQMDKNQDGRLSLEEFIE 41
++ ++ DKN DG + EEF+E
Sbjct: 435 QVLQECDKNNDGEVDFEEFVE 455
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
K +IFRQ+D N DG+L +E IEG +
Sbjct: 40 KELTQIFRQLDNNGDGQLDRKELIEGYR 67
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 21 KIFRQMDKNQDGRLSLEEFIE 41
++ ++ DKN DG + EEF+E
Sbjct: 161 QVLQECDKNNDGEVDFEEFVE 181
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEGA 43
++F + DKN+DG+LSL+EF E A
Sbjct: 5 RVFEKFDKNKDGKLSLDEFREVA 27
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
K IF +MDKN DG+L E IEG K
Sbjct: 358 KELTAIFHKMDKNGDGQLDRAELIEGYK 385
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
K IF +MDKN DG+L E IEG K
Sbjct: 359 KELTAIFHKMDKNGDGQLDRAELIEGYK 386
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
K IF +MDKN DG+L E IEG K
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAELIEGYK 362
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 7 KMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEG 42
K+ E T E TD IFR +DKN DG+L +E I+G
Sbjct: 338 KLTSQEETKE-LTD-IFRHIDKNGDGQLDRQELIDG 371
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 13 STPEKRTD--KIFRQMDKNQDGRLSLEEFIEG 42
+T E+R + IF+++DKN DG+L +E IEG
Sbjct: 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEG 380
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 7 KMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEG 42
K+ E T E TD IFR +DKN DG+L +E I+G
Sbjct: 55 KLTSQEETKE-LTD-IFRHIDKNGDGQLDRQELIDG 88
>pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin D9k (F36g + P43m
Mutant)
Length = 75
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 47 DELFEELDKNGDGEVSFEEF 66
>pdb|1CDN|A Chain A, Solution Structure Of (Cd2+)1-Calbindin D9k Reveals
Details Of The Stepwise Structural Changes Along The
Apo--> (Ca2+) Ii1--> (Ca2+)i,Ii2 Binding Pathway
pdb|1CLB|A Chain A, Determination Of The Solution Structure Of Apo Calbindin
D9k By Nmr Spectroscopy
pdb|2BCA|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
Length = 76
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 48 DELFEELDKNGDGEVSFEEF 67
>pdb|1IG5|A Chain A, Bovine Calbindin D9k Binding Mg2+
pdb|1IGV|A Chain A, Bovine Calbindin D9k Binding Mn2+
pdb|3ICB|A Chain A, The Refined Structure Of Vitamin D-Dependent Calcium-
Binding Protein From Bovine Intestine. Molecular
Details, Ion Binding, And Implications For The
Structure Of Other Calcium-Binding Proteins
Length = 75
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 47 DELFEELDKNGDGEVSFEEF 66
>pdb|2BCB|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
pdb|1B1G|A Chain A, Solvated Refinement Of Ca-Loaded Calbindin D9k
Length = 75
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 47 DELFEELDKNGDGEVSFEEF 66
>pdb|1KSM|A Chain A, Average Nmr Solution Structure Of Ca Ln Calbindin D9k
pdb|1KQV|A Chain A, Family Of Nmr Solution Structures Of Ca Ln Calbindin D9k
Length = 79
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 51 DELFEELDKNGDGEVSFEEF 70
>pdb|4ICB|A Chain A, Proline Cis-Trans Isomers In Calbindin D9k Observed By
X- Ray Crystallography
Length = 76
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 48 DELFEELDKNGDGEVSFEEF 67
>pdb|1N65|A Chain A, Family Of Nmr Solution Structures Of Ca Ce Calbindin D9k
In Denaturating Conditions
Length = 75
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 47 DELFEELDKNGDGEVSFEEF 66
>pdb|1HT9|A Chain A, Domain Swapping Ef-Hands
pdb|1HT9|B Chain B, Domain Swapping Ef-Hands
Length = 76
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 48 DELFEELDKNGDGEVSFEEF 67
>pdb|1BOC|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 76
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 48 DELFEELDKNGDGEVSFEEF 67
>pdb|1BOD|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 74
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DKN DG +S EEF
Sbjct: 46 DELFEELDKNGDGEVSFEEF 65
>pdb|2L50|A Chain A, Solution Structure Of Apo S100a16
pdb|2L50|B Chain B, Solution Structure Of Apo S100a16
pdb|2L51|A Chain A, Solution Structure Of Calcium Bound S100a16
pdb|2L51|B Chain B, Solution Structure Of Calcium Bound S100a16
Length = 102
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEF 39
K DK+ + +D N DGR+S +E+
Sbjct: 56 KAADKLIQNLDANHDGRISFDEY 78
>pdb|3NXA|A Chain A, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|B Chain B, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|C Chain C, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|D Chain D, X-Ray Structure Of The Apo Form Of Human S100a16
Length = 100
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEF 39
K DK+ + +D N DGR+S +E+
Sbjct: 55 KAADKLIQNLDANHDGRISFDEY 77
>pdb|1CB1|A Chain A, Three-Dimensional Solution Structure Of Ca2+-Loaded
Porcine Calbindin D9k Determined By Nuclear Magnetic
Resonance Spectroscopy
Length = 78
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D +F+++DKN DG +S EEF
Sbjct: 50 DDLFQELDKNGDGEVSFEEF 69
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 15 PEKRTDKIFRQMDKNQDGRLSLEEF 39
P++ D + R+ D +QDGR++ EEF
Sbjct: 40 PQEELDAMIREADVDQDGRVNYEEF 64
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 10 EDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
+DE+ K IF + DKN DG+L E IEG K
Sbjct: 331 QDET---KELTAIFHKXDKNGDGQLDRAELIEGYK 362
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 13 STPEKRTDKIFRQMDKNQDGRLSLEEFI 40
S P+ + I+ D +QDG+L+ EEFI
Sbjct: 44 SLPQAQLASIWNLSDIDQDGKLTAEEFI 71
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVR 51
E E DK F Q D+ DG++ ++E+ + +PS+++
Sbjct: 150 EDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIK 189
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVR 51
E E DK F Q D+ DG++ ++E+ + +PS+++
Sbjct: 150 EDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIK 189
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The
Cardiac Regulatory Protein Troponin C
Length = 72
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 30 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 70
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 119 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEF 39
T E+ +D +FR DKN DG + LEE
Sbjct: 93 TEEELSD-LFRMFDKNADGYIDLEEL 117
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 39 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 79
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEF 39
T E+ +D +FR DKN DG + LEE
Sbjct: 13 TEEELSD-LFRMFDKNADGYIDLEEL 37
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 31 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 71
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 PEKRTDKIFRQMDKNQDGRLSLEEF 39
E+ +FR DKN DG + LEE
Sbjct: 5 SEEELSDLFRMFDKNADGYIDLEEL 29
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 119 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 29 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 69
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 15 PEKRTDKIFRQMDKNQDGRLSLEEF 39
E+ +FR DKN DG + LEE
Sbjct: 3 SEEELSDLFRMFDKNADGYIDLEEL 27
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 119 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEF 39
T E+ +D +FR DKN DG + LEE
Sbjct: 93 TEEELSD-LFRMFDKNADGYIDLEEL 117
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 119 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 119 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1 MVGTVMKMPED-ESTPEKRTDKIFRQMDKNQDGRLSLEEF 39
+V V M +D + E+ +FR DKN DG + LEE
Sbjct: 78 LVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEEL 117
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr,
30 Structures
Length = 76
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +EF+E K
Sbjct: 34 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 74
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 14 TPEKRTDKIFRQMDKNQDGRLSLEEF 39
T E+ +D +FR DKN DG + LEE
Sbjct: 8 TEEELSD-LFRMFDKNADGYIDLEEL 32
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEG 42
K+ + DKN DG++S EEF+
Sbjct: 53 KLIKMADKNSDGKISKEEFLNA 74
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 18 RTDKIFRQMDKNQDGRLSLEEFIEGAK 44
R ++ R +DKN DG++ EF E K
Sbjct: 164 RVKRMIRDVDKNNDGKIDFHEFSEMMK 190
>pdb|2SCP|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|2SCP|B Chain B, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|1Q80|A Chain A, Solution Structure And Dynamics Of Nereis Sarcoplasmic
Calcium Binding Protein
Length = 174
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 23 FRQMDKNQDGRLSLEEFI 40
F +D N DG LSLEEF+
Sbjct: 134 FDAIDTNNDGLLSLEEFV 151
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 9 PEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIV 50
P+D++ E+ IF++ D N DG++S E E K+ SI
Sbjct: 5 PQDKAERER----IFKRFDANGDGKISAAELGEALKTLGSIT 42
>pdb|1K2H|A Chain A, Three-Dimensional Solution Structure Of Apo-S100a1.
pdb|1K2H|B Chain B, Three-Dimensional Solution Structure Of Apo-S100a1.
pdb|1ZFS|A Chain A, Solution Structure Of S100a1 Bound To Calcium
pdb|1ZFS|B Chain B, Solution Structure Of S100a1 Bound To Calcium
pdb|2K2F|A Chain A, Solution Structure Of Ca2+-S100a1-Ryrp12
pdb|2K2F|B Chain B, Solution Structure Of Ca2+-S100a1-Ryrp12
pdb|2KBM|A Chain A, Ca-S100a1 Interacting With Trtk12
pdb|2KBM|B Chain B, Ca-S100a1 Interacting With Trtk12
Length = 93
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFI 40
DKI +++D+N DG + +EF+
Sbjct: 54 VDKIMKELDENGDGEVDFQEFV 75
>pdb|1QX2|A Chain A, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A
Conformational Opening) At 1.44 A Resolution
pdb|1QX2|B Chain B, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A
Conformational Opening) At 1.44 A Resolution
Length = 76
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
D++ ++DKN DG +S EEF+
Sbjct: 48 DEMIEEVDKNGDGEVSFEEFL 68
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 17 KRTDKIFRQMDKNQDGRLSLEEFIEG 42
K+ +IFR++D N DG L +E + G
Sbjct: 331 KQLTEIFRKLDTNNDGMLDRDELVRG 356
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 11 DESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 41
D S + + I Q+D N+DG + EF+E
Sbjct: 447 DSSIQMEELESIIEQVDNNKDGEVDFNEFVE 477
>pdb|1D1O|A Chain A, Cooperativity In Ef-Hand Ca2+-Binding Proteins: Evidence
Of Site-Site Communication From Binding-Induced Changes
In Structure And Dynamics Of N56a Calbindin D9k
Length = 75
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
D++F ++DK DG +S EEF
Sbjct: 47 DELFEELDKAGDGEVSFEEF 66
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 39
MVG +K ++ ++ DK DK+ DGR+S EEF
Sbjct: 118 MVGNNLK----DTQLQQIVDKTIINADKDGDGRISFEEF 152
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 39
MVG +K ++ ++ DK DK+ DGR+S EEF
Sbjct: 119 MVGNNLK----DTQLQQIVDKTIINADKDGDGRISFEEF 153
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 18 RTDKIFRQMDKNQDGRLSLEEFIEGAK 44
R + I+R++ G ++LEEF++G +
Sbjct: 146 RNENIYREVITAAQGEIALEEFLKGVR 172
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 39
MVG +K ++ ++ DK DK+ DGR+S EEF
Sbjct: 104 MVGNNLK----DTQLQQIVDKTIINADKDGDGRISFEEF 138
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 18 RTDKIFRQMDKNQDGRLSLEEFIEGAK 44
R + I+R++ G ++LEEF++G +
Sbjct: 146 RNENIYREVITAAQGEIALEEFLKGVR 172
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ EK + I +D N D +LS EEFI
Sbjct: 51 ENKNEKVIEHIMEDLDTNADKQLSFEEFI 79
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 1 MVGTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEF 39
MVG +K ++ ++ DK DK+ DGR+S EEF
Sbjct: 105 MVGNNLK----DTQLQQIVDKTIINADKDGDGRISFEEF 139
>pdb|4GGF|C Chain C, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|L Chain L, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|T Chain T, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|V Chain V, Crystal Structure Of Mn2+ Bound Calprotectin
Length = 114
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ EK + I +D N D +LS EEFI
Sbjct: 52 ENKNEKVIEHIMEDLDTNADKQLSFEEFI 80
>pdb|1XK4|C Chain C, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|D Chain D, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|G Chain G, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|H Chain H, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|K Chain K, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|L Chain L, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
Length = 113
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E+ EK + I +D N D +LS EEFI
Sbjct: 51 ENKNEKVIEHIMEDLDTNADKQLSFEEFI 79
>pdb|2WCE|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCE|B Chain B, Calcium-Free (Apo) S100a12
Length = 95
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
D+IF+ +D NQD ++ +EFI
Sbjct: 58 DEIFQGLDANQDEQVDFQEFI 78
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEGAKS 45
+IF++ D N DG++SL E + ++
Sbjct: 7 RIFKRFDTNGDGKISLSELTDALRT 31
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEGAKS 45
+IF++ D N DG++SL E + ++
Sbjct: 6 RIFKRFDTNGDGKISLSELTDALRT 30
>pdb|1ODB|A Chain A, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|B Chain B, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|C Chain C, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|D Chain D, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|E Chain E, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|F Chain F, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|2WC8|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|C Chain C, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|D Chain D, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCF|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCF|B Chain B, Calcium-Free (Apo) S100a12
pdb|2WCF|C Chain C, Calcium-Free (Apo) S100a12
pdb|2WCF|D Chain D, Calcium-Free (Apo) S100a12
pdb|2WCF|E Chain E, Calcium-Free (Apo) S100a12
pdb|2WCF|F Chain F, Calcium-Free (Apo) S100a12
Length = 95
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
D+IF+ +D NQD ++ +EFI
Sbjct: 58 DEIFQGLDANQDEQVDFQEFI 78
>pdb|1E8A|A Chain A, The Three-Dimensional Structure Of Human S100a12
pdb|1E8A|B Chain B, The Three-Dimensional Structure Of Human S100a12
pdb|1GQM|A Chain A, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|B Chain B, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|C Chain C, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|D Chain D, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|E Chain E, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|F Chain F, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|G Chain G, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|H Chain H, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|I Chain I, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|J Chain J, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|K Chain K, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|L Chain L, The Structure Of S100a12 In A Hexameric Form
Length = 91
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
D+IF+ +D NQD ++ +EFI
Sbjct: 54 DEIFQGLDANQDEQVDFQEFI 74
>pdb|1XK4|A Chain A, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|B Chain B, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|E Chain E, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|F Chain F, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|I Chain I, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|J Chain J, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|4GGF|A Chain A, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|K Chain K, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|S Chain S, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|U Chain U, Crystal Structure Of Mn2+ Bound Calprotectin
Length = 93
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 7 KMPEDES---TPEKRTDKIFRQMDKNQDGRLSLEEFI 40
K+ E ES +K D F+++D N DG ++ +EF+
Sbjct: 36 KLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFL 72
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 12 ESTPEKRTDK--IFRQMDKNQDGRLSLEEFIEGAKSDPSIV 50
E TP+ D+ IF++ D N DG++S E + K+ S+
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVT 44
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 VMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
+M E+ E +++ + DKN DGR+ +E++E K
Sbjct: 119 IMLQATGETITEDDIEELMKDGDKNNDGRIDYDEWLEFMKG 159
>pdb|2LVV|A Chain A, Nmr Structure Of Tb24
Length = 226
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 8 MPEDESTPEK-RTDKIFRQMDKNQDGRLSLEEFIEG 42
+P D+ K R ++F+Q D N G+L E ++G
Sbjct: 41 IPRDKDAESKSRRIELFKQFDTNGTGKLGFREVLDG 76
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
++I R +D N DGR+ EEF+
Sbjct: 47 EEIIRDVDLNGDGRVDFEEFV 67
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MVGTVMKMPED-ESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 41
+V V +M ED + E+ ++FR D+N DG + EE E
Sbjct: 76 LVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAE 117
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
++I R +D N DGR+ EEF+
Sbjct: 128 EEIIRDVDLNGDGRVDFEEFV 148
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
++I R +D N DGR+ EEF+
Sbjct: 142 EEIIRDVDLNGDGRVDFEEFV 162
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E E+ + + + DKN DGR+ +EF+
Sbjct: 127 EHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E E+ + + + DKN DGR+ +EF+
Sbjct: 127 EHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
++I R +D N DGR+ EEF+
Sbjct: 128 EEIIRDVDLNGDGRVDFEEFV 148
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E E+ + + + DKN DGR+ +EF+
Sbjct: 127 EHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MVGTVMKMPED-ESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 41
+V V +M ED + E+ + FR DKN DG + +EE E
Sbjct: 79 LVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGE 120
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E E+ + + + DKN DGR+ +EF+
Sbjct: 124 EHVTEEDIEDLMKDSDKNNDGRIDFDEFL 152
>pdb|2LLU|A Chain A, Post-Translational S-Nitrosylation Is An Endogenous
Factor Fine-Tuning Human S100a1 Protein Properties
pdb|2LLU|B Chain B, Post-Translational S-Nitrosylation Is An Endogenous
Factor Fine-Tuning Human S100a1 Protein Properties
pdb|2LP2|A Chain A, Solution Structure And Dynamics Of Human S100a1 Protein
Modified At Cysteine 85 With Homocysteine Disulfide
Bond Formation In Calcium Saturated Form
pdb|2LP2|B Chain B, Solution Structure And Dynamics Of Human S100a1 Protein
Modified At Cysteine 85 With Homocysteine Disulfide
Bond Formation In Calcium Saturated Form
pdb|2LP3|A Chain A, Solution Structure Of S100a1 Ca2+
pdb|2LP3|B Chain B, Solution Structure Of S100a1 Ca2+
Length = 93
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFI 40
DK+ +++D+N DG + +E++
Sbjct: 54 VDKVMKELDENGDGEVDFQEYV 75
>pdb|2LLS|A Chain A, Solution Structure Of Human Apo-S100a1 C85m
pdb|2LLS|B Chain B, Solution Structure Of Human Apo-S100a1 C85m
Length = 93
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFI 40
DK+ +++D+N DG + +E++
Sbjct: 54 VDKVMKELDENGDGEVDFQEYV 75
>pdb|2LLT|A Chain A, Post-Translational S-Nitrosylation Is An Endogenous
Factor Fine-Tuning Human S100a1 Protein Properties
pdb|2LLT|B Chain B, Post-Translational S-Nitrosylation Is An Endogenous
Factor Fine-Tuning Human S100a1 Protein Properties
Length = 93
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFI 40
DK+ +++D+N DG + +E++
Sbjct: 54 VDKVMKELDENGDGEVDFQEYV 75
>pdb|2L0P|A Chain A, Solution Structure Of Human Apo-S100a1 Protein By Nmr
Spectroscopy
pdb|2L0P|B Chain B, Solution Structure Of Human Apo-S100a1 Protein By Nmr
Spectroscopy
Length = 94
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFI 40
DK+ +++D+N DG + +E++
Sbjct: 55 VDKVMKELDENGDGEVDFQEYV 76
>pdb|2LHL|A Chain A, Chemical Shift Assignments And Solution Structure Of
Human Apo-S100a1 E32q Mutant
pdb|2LHL|B Chain B, Chemical Shift Assignments And Solution Structure Of
Human Apo-S100a1 E32q Mutant
Length = 93
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFI 40
DK+ +++D+N DG + +E++
Sbjct: 54 VDKVMKELDENGDGEVDFQEYV 75
>pdb|3GWP|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
pdb|3GWP|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
pdb|3GWP|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
pdb|3GWP|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
Length = 427
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 23 FRQMDKNQDGRLSLEEFIEGAKSDPSI 49
++Q+D +DG+ +LEE + K D SI
Sbjct: 151 YKQVDLKEDGKPNLEEIEKVLKEDESI 177
>pdb|3I16|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
Length = 427
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 23 FRQMDKNQDGRLSLEEFIEGAKSDPSI 49
++Q+D +DG+ +LEE + K D SI
Sbjct: 151 YKQVDLKEDGKPNLEEIEKVLKEDESI 177
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 21 KIFRQMDKNQDGRLSLEEFIE 41
K+ R++DKN DG++ EF E
Sbjct: 170 KMIREVDKNGDGKIDFYEFSE 190
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
E E+ + + + DKN DGR+ +EF+
Sbjct: 41 EHVIEEDIEDLMKDSDKNNDGRIDFDEFL 69
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 EKRTDKIFRQMDKNQDGRLSLEEFIE 41
+ R F +DKN DGRL+ EE E
Sbjct: 97 DNRLRTFFDMVDKNADGRLTAEEVKE 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,760,372
Number of Sequences: 62578
Number of extensions: 50880
Number of successful extensions: 423
Number of sequences better than 100.0: 169
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 246
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)