RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15330
(60 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 41.5 bits (98), Expect = 2e-06
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 9 PEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSI 49
E ++ +K+ ++ D++ DG + EEF + K P+I
Sbjct: 120 SLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPTI 160
Score = 26.9 bits (60), Expect = 0.43
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 4 TVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAKS 45
TVM + E+ + F+ DK+ DG +S+ E KS
Sbjct: 79 TVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS 120
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 39.5 bits (93), Expect = 3e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 12 ESTPEKRTDKIFRQMDKNQDGRLSLEEFIEGAK 44
E E+ D++ R++DK+ DG++ EEF+E
Sbjct: 31 EGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
Score = 28.7 bits (65), Expect = 0.041
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEGAKS 45
+ FR DK+ DG +S +E KS
Sbjct: 4 EAFRLFDKDGDGTISADELKAALKS 28
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 34.3 bits (79), Expect = 2e-04
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 6 MKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFIE 41
+ + + E+ + F ++DK+ DGR+S EEF+E
Sbjct: 23 LGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
Score = 25.4 bits (56), Expect = 0.70
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 24 RQMDKNQDGRLSLEEFIEGAKS 45
+ +DK+ DG + +EE + K+
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKA 22
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 33.6 bits (78), Expect = 3e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 20 DKIFRQMDKNQDGRLSLEEFIEGAKS 45
+ F++ DK+ DG++S EEF E K
Sbjct: 3 KEAFKEFDKDGDGKISFEEFKELLKK 28
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 33.0 bits (77), Expect = 4e-04
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 20 DKIFRQMDKNQDGRLSLEEFIE 41
+FRQ D N DG++S EE
Sbjct: 2 KDLFRQFDTNGDGKISKEELKR 23
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.7 bits (76), Expect = 6e-04
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 20 DKIFRQMDKNQDGRLSLEEFIEGAKS 45
+ FR DK+ DG++ EEF + K+
Sbjct: 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 33.6 bits (78), Expect = 7e-04
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 3 GTVMKMPEDESTPEKRTDKIFRQMDKNQDGRLSLEEFI 40
+K +D DKI + +D N+DG++ +EF+
Sbjct: 41 PNFLKNQKDPEA----VDKIMKDLDVNKDGKVDFQEFL 74
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in
proteins belonging to the Calgranulin subgroup of the
S100 family of EF-hand calcium-modulated proteins,
including S100A8, S100A9, and S100A12 . Note that the
S-100 hierarchy, to which this Calgranulin group
belongs, contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. These proteins
are expressed mainly in granulocytes, and are involved
in inflammation, allergy, and neuritogenesis, as well
as in host-parasite response. Calgranulins are
modulated not only by calcium, but also by other metals
such as zinc and copper. Structural data suggested that
calgranulins may exist in multiple structural forms,
homodimers, as well as hetero-oligomers. For example,
the S100A8/S100A9 complex called calprotectin plays
important roles in the regulation of inflammatory
processes, wound repair, and regulating zinc-dependent
enzymes as well as microbial growth.
Length = 88
Score = 33.5 bits (77), Expect = 0.001
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 16 EKRTDKIFRQMDKNQDGRLSLEEFIE 41
+K DKIF +D NQDG+LS EEF+
Sbjct: 50 QKAIDKIFEDLDTNQDGQLSFEEFLV 75
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 31.4 bits (72), Expect = 0.002
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEGAKS 45
+ F+ DK+ DG +S EE + +S
Sbjct: 4 EAFKLFDKDGDGYISAEELRKALRS 28
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated
in endocytosis, vesicle transport, and signal
transduction. The alignment contains a pair of EF-hand
motifs, typically one of them is canonical and binds to
Ca2+, while the other may not bind to Ca2+. A
hydrophobic binding pocket is formed by residues from
both EF-hand motifs. The EH domain binds to proteins
containing NPF (class I), [WF]W or SWG (class II), or
H[TS]F (class III) sequence motifs.
Length = 67
Score = 29.1 bits (66), Expect = 0.034
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 21 KIFRQMDKNQDGRLSLEEFI 40
+I+ D ++DG+L EEF
Sbjct: 37 QIWDLADTDKDGKLDKEEFA 56
Score = 26.0 bits (58), Expect = 0.47
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 20 DKIFRQMDKNQDGRLS 35
D+IFR +D + DG +S
Sbjct: 2 DQIFRSLDPDGDGLIS 17
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 28.6 bits (65), Expect = 0.043
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 22 IFRQMDKNQDGRLSLEEFIE 41
+FR+ D + DG++S EEF
Sbjct: 29 LFREFDTDGDGKISFEEFCV 48
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 29.8 bits (68), Expect = 0.043
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 22 IFRQMDKNQDGRLSLEEFIEGAKSDPSI 49
IFR++ K + +SLEEF + A+ DP I
Sbjct: 34 IFRELAKERG--MSLEEFNKYAEEDPEI 59
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 29.2 bits (66), Expect = 0.064
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 21 KIFRQMDKNQDGRLSLEEFIEGAKSDPSI 49
IFR+M + + +SLEEF A+ DP I
Sbjct: 33 TIFREMARERG--MSLEEFSRYAEEDPEI 59
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 27.8 bits (62), Expect = 0.24
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 19 TDKIFRQMDKNQDGRLSLEEFIEG 42
+D +F +D N DG+++ EE G
Sbjct: 359 SDAVFDALDLNHDGKITPEEMRAG 382
>gnl|CDD|240152 cd05025, S-100A1, S-100A1: S-100A1 domain found in proteins
similar to S100A1. S100A1 is a calcium-binding protein
belonging to a large S100 vertebrate-specific protein
family within the EF-hand superfamily of
calcium-binding proteins. Note that the S-100
hierarchy, to which this S-100A1 group belongs,
contains only S-100 EF-hand domains, other EF-hands
have been modeled separately. As is the case with many
other members of S100 protein family, S100A1 is
implicated in intracellular and extracellular
regulatory activities, including interaction with
myosin-associated twitchin kinase, actin-capping
protein CapZ, sinapsin I, and tubulin. Structural data
suggests that S100A1 proteins exist within cells as
antiparallel homodimers, while heterodimers with
S100A4 and S100B also has been reported. Upon binding
calcium S100A1 changes conformation to expose a
hydrophobic cleft which is the interaction site of
S100A1 with its more that 20 known target proteins.
Length = 92
Score = 26.8 bits (59), Expect = 0.34
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
DKI +++D+N DG + +EF+
Sbjct: 55 DKIMKELDENGDGEVDFQEFV 75
>gnl|CDD|240149 cd05022, S-100A13, S-100A13: S-100A13 domain found in proteins
similar to S100A13. S100A13 is a calcium-binding
protein belonging to a large S100 vertebrate-specific
protein family within the EF-hand superfamily of
calcium-binding proteins. Note that the S-100
hierarchy, to which this S-100A13 group belongs,
contains only S-100 EF-hand domains, other EF-hands
have been modeled separately. S100A13 is involved in
the cellular export of interleukin-1 (IL-1) and of
fibroblast growth factor-1 (FGF-1), which plays an
important role in angiogenesis and tissue regeneration.
Export is based on the CuII-dependent formation of
multiprotein complexes containing the S100A13 protein.
Assembly of these complexes occurs near the inner
surface of the plasma membrane. Binding of two Ca(II)
ions per monomer triggers key conformational changes
leading to the creation of two identical and
symmetrical Cu(II)-binding sites on the surface of the
protein, close to the interface between the two
monomers. These Cu(II)-binding sites are unique among
the S100 proteins, which are reported to bind Cu(II) or
Zn(II) ions in addition to Ca(II) ions. In addition,
the three-dimensional structure of S100A13 differs
significantly from those of other S100 proteins; the
hydrophobic pocket that largely contributes to
protein-protein interactions in other S100 proteins is
absent in S100A13. The structure of S100A13 contains a
large patch of negatively charged residues flanked by
dense cationic clusters, formed mostly from positively
charged residues from the C-terminal end, which plays
major role in binding FGF-1.
Length = 89
Score = 26.9 bits (60), Expect = 0.35
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 20 DKIFRQMDKNQDGRLSLEEF 39
++ + +D NQD +LS EEF
Sbjct: 50 EEKMKNLDVNQDSKLSFEEF 69
>gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal
transduction mechanisms].
Length = 384
Score = 27.5 bits (61), Expect = 0.38
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 23 FRQMDKNQDGRLSLEEFIEG-AKSDPSIVRLLQC 55
+ + S + G A P IVR LQC
Sbjct: 190 VYSLLFREPLCKSSHSDLSGLAALLPVIVRFLQC 223
>gnl|CDD|240157 cd05031, S-100A10_like, S-100A10_like: S-100A10 domain found in
proteins similar to S100A10. S100A10 is a member of the
S100 family of EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1_like group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins are expressed exclusively in vertebrates,
and are implicated in intracellular and extracellular
regulatory activities. A unique feature of S100A10 is
that it contains mutation in both of the calcium
binding sites, making it calcium insensitive. S100A10
has been detected in brain, heart, gastrointestinal
tract, kidney, liver, lung, spleen, testes, epidermis,
aorta, and thymus. Structural data supports the homo-
and hetero-dimeric as well as hetero-tetrameric nature
of the protein. S100A10 has multiple binding partners
in its calcium free state and is therefore involved in
many diverse biological functions.
Length = 94
Score = 26.6 bits (59), Expect = 0.38
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 20 DKIFRQMDKNQDGRLSLEEFI 40
DKI + +D+N+DG+++ EEF+
Sbjct: 54 DKIMKDLDQNRDGKVNFEEFV 74
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs
that recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 25.7 bits (57), Expect = 0.89
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 20 DKIFRQMDKNQDGRLS 35
++IFR +DKNQDG ++
Sbjct: 13 EQIFRSLDKNQDGTVT 28
>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional.
Length = 272
Score = 26.2 bits (58), Expect = 0.93
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 14 TPEKRTDKIFRQMDKNQ 30
TPEK +KI ++KN+
Sbjct: 217 TPEKAAEKILAGVEKNR 233
>gnl|CDD|222857 PHA02531, 20, portal vertex protein; Provisional.
Length = 514
Score = 26.1 bits (58), Expect = 0.93
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 16 EKRTDKIFRQMDKNQDGRLSLEEFIEGAKSDPSIVRLLQCDPQN 59
+++ +IFR+ DGR+ + I+ I L Q DP+
Sbjct: 137 DRKGYEIFRRWYV--DGRIFFHKIIDPKNPKGGIQELRQLDPRK 178
>gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase;
Provisional.
Length = 644
Score = 26.1 bits (58), Expect = 1.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 24 RQMDKNQDGRLSLEEFIEGAKSDPS 48
++ + ++ SL+E++E K DPS
Sbjct: 9 QRYEAAKEEEFSLQEYLELCKQDPS 33
>gnl|CDD|201220 pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.
Length = 131
Score = 25.5 bits (57), Expect = 1.4
Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 31 DGRLSLEEFIEG-AKSD 46
+G +S+ EF+ G AKS+
Sbjct: 42 NGEISVREFVRGLAKSE 58
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 25.2 bits (55), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 10 EDESTPEKR-TDKIFRQMDKNQDGRLSLEEF 39
ED E+ +I +D ++DG+LS EF
Sbjct: 171 EDPVETERSFARRILAIVDYDEDGQLSFSEF 201
>gnl|CDD|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology
domain of Sorting Nexins 17 and 31. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions. Members of this
subfamily include sorting nexin 17 (SNX17), SNX31, and
similar proteins. They contain an N-terminal PX domain
followed by a truncated FERM (4.1, ezrin, radixin, and
moesin) domain and a unique C-terminal region. SNXs
make up the largest group among PX domain containing
proteins. They are involved in regulating membrane
traffic and protein sorting in the endosomal system.
The PX domain of SNXs binds PIs and targets the protein
to PI-enriched membranes. SNXs differ from each other
in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway. SNX17 is
known to regulate the trafficking and processing of a
number of proteins. It binds some members of the
low-density lipoprotein receptor (LDLR) family such as
LDLR, VLDLR, ApoER2, and others, regulating their
endocytosis. It also binds P-selectin and may regulate
its lysosomal degradation. SNX17 is highly expressed in
neurons. It binds amyloid precursor protein (APP) and
may be involved in its intracellular trafficking and
processing to amyloid beta peptide, which plays a
central role in the pathogenesis of Alzheimer's
disease. The biological function of SNX31 is unknown.
Length = 104
Score = 24.2 bits (53), Expect = 4.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 21 KIFRQMDKNQ--DGRLSLEEFIEGAKSDPSIVR 51
K + Q + RL LE++++ DP I
Sbjct: 60 KKLLPLTPAQLEERRLQLEKYLQAVVQDPRIAN 92
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of
other kinases such as protein serine/threonine kinases,
RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group
from ATP to tyrosine (tyr) residues in protein
substrates. DDR subfamily members are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDRs regulate cell adhesion, proliferation, and
extracellular matrix remodeling. They have been linked
to a variety of human cancers including breast, colon,
ovarian, brain, and lung. There is no evidence showing
that DDRs act as transforming oncogenes. They are more
likely to play a role in the regulation of tumor growth
and metastasis.
Length = 296
Score = 24.2 bits (53), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Query: 35 SLEEFIEGAK-----SDPSIVRLL 53
+ E+F++ K SDP+I RLL
Sbjct: 62 AREDFLKEVKILSRLSDPNIARLL 85
>gnl|CDD|182002 PRK09627, oorA, 2-oxoglutarate-acceptor oxidoreductase subunit
OorA; Reviewed.
Length = 375
Score = 23.9 bits (52), Expect = 6.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 10 EDESTPEKRTDKIFRQMDKNQDGRLSLEEF 39
ED K D++F +++ +QD EE+
Sbjct: 241 EDAKICGKLIDRLFNKIESHQDEIEEYEEY 270
>gnl|CDD|197781 smart00542, FYRC, FY-rich domain, C-terminal region. is
sometimes closely juxtaposed with the N-terminal region
(FYRN), but sometimes is far distant. Unknown function,
but occurs frequently in chromatin-associated proteins.
Length = 86
Score = 23.4 bits (51), Expect = 7.3
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 13 STPEKRTDKIFR---QMDKNQDGRLSLEEFIEGAK----SDPSIVRLLQCDPQNH 60
+PEK + + + D L E + G + S P++V+L++ P H
Sbjct: 17 ESPEKCWEMVLERVQEARIAADLLQLLPEGVSGEEMFGLSSPAVVKLIEALPGVH 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,974,736
Number of extensions: 201156
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 37
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)