RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15334
(451 letters)
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 390 bits (1005), Expect = e-135
Identities = 121/286 (42%), Positives = 172/286 (60%), Gaps = 10/286 (3%)
Query: 150 PIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDS 204
P+ + F +++FE+LK +G P AA+L NR KNRYTNI PYD
Sbjct: 4 PVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDF 63
Query: 205 SRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVML 264
SR +L +++EEG+DY+NANYI GY SP++YIATQGPL T +DFW+M + ++ IVML
Sbjct: 64 SRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVML 123
Query: 265 TQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCRGGEHRMISHYH 324
TQC EK R KC YWP + P+ DI + + W R+ E + + H++
Sbjct: 124 TQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYADEMQDVMHFN 183
Query: 325 FTTWPDSGVPS--SPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRL 382
+T WPD GVP+ + +++ FV R + ++ P+++HCSAGVGRTGTFIALD +LQ +
Sbjct: 184 YTAWPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTFIALDRLLQHI 243
Query: 383 YNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGG 428
VDIL +V +R R+ MVQ+ QY FI++CVQ+
Sbjct: 244 ---RDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKK 286
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 390 bits (1005), Expect = e-135
Identities = 157/307 (51%), Positives = 201/307 (65%), Gaps = 11/307 (3%)
Query: 126 PRMSVTRRDTCHPSQDVTLHNCSHPIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQ 180
P PI + F + EFE+LK VGR Q
Sbjct: 4 SHHHHHHSSGLVPRGSHMAS---RPILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQ 60
Query: 181 PTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQG 240
P T A+L CNRPKNR+TNI PYD SR+KLQPVDD+EGSDY+NANY+ G+ SPR++I TQG
Sbjct: 61 PCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPREFIVTQG 120
Query: 241 PLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCH 300
PL ST DDFWRMCWES + AIVMLT+C EK R+KC +YWP+D P+ DI++ + + H
Sbjct: 121 PLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPNDTVPVFYGDIKVQILNDSH 180
Query: 301 YGSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVV 360
Y WV++E +CRG E R++ H+HFTTWPD GVP+ P TLV FV +FR I Q PIVV
Sbjct: 181 YADWVMTEFMLCRGSEQRILRHFHFTTWPDFGVPNPPQTLVRFVRAFRDRIGAEQRPIVV 240
Query: 361 HCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYEC 420
HCSAGVGR+GTFI LD +LQ++ + VDI IV+ +R++RV MVQ+ QY I++C
Sbjct: 241 HCSAGVGRSGTFITLDRILQQI---NTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQC 297
Query: 421 VQVYLQG 427
+ L+G
Sbjct: 298 LLAVLEG 304
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 380 bits (977), Expect = e-131
Identities = 92/282 (32%), Positives = 135/282 (47%), Gaps = 12/282 (4%)
Query: 169 EFEDLKS------VGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVN 222
EF LK + PTT AE N KNRY +I PYD SR +L + +E S Y+N
Sbjct: 27 EFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYIN 86
Query: 223 ANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSD 282
AN+I G P+ YIATQGPL +T+ DFWRM WE IVM E + KC +YW
Sbjct: 87 ANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEP 146
Query: 283 -QHPMRCADIEISLQDVCHYGSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLV 341
+ + +S + +++ L++ E R I +H+ WPD VPSS + ++
Sbjct: 147 GEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPIL 206
Query: 342 SFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLR 401
+ R + PI +HCSAG GRTG A+D L + + + ++ +R
Sbjct: 207 ELIWDVRCYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMR 266
Query: 402 RQRVLMVQSLAQYAFIYECVQVYLQGGV-----RHEERQIQN 438
QR +VQ+ QY +Y V + + +H +
Sbjct: 267 TQRPSLVQTQEQYELVYNAVLELFKRQMDVIRDKHSAHHHHH 308
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 377 bits (971), Expect = e-130
Identities = 94/289 (32%), Positives = 134/289 (46%), Gaps = 12/289 (4%)
Query: 150 PIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQ------PTTAAELRCNRPKNRYTN 198
P F + +A EF D+++ T A N KNRY +
Sbjct: 9 PDSARSFLERLEARGGREGAVLAGEFSDIQACSAAWKADGVCSTVAGSRPENVRKNRYKD 68
Query: 199 IFPYDSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRT 258
+ PYD +R L + +E SDY+N N+I G YIATQGPL T+ DFWR+ WE
Sbjct: 69 VLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLAYIATQGPLPHTLLDFWRLVWEFGV 128
Query: 259 PAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHY-GSWVLSELRMCRGGEH 317
I+M + IE R +C +YW +Q P++ I+L +L L++ E
Sbjct: 129 KVILMACREIENGRKRCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVTFQKES 188
Query: 318 RMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDT 377
R + + +WPD GVPSSP+ +++ V R P+ VHCSAG GRTG +D
Sbjct: 189 RSVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGSGPEPLCVHCSAGCGRTGVLCTVDY 248
Query: 378 VLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
V Q L + +V +R+QR VQ+ QY F+Y V
Sbjct: 249 VRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQMFC 297
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 377 bits (970), Expect = e-130
Identities = 107/290 (36%), Positives = 149/290 (51%), Gaps = 15/290 (5%)
Query: 150 PIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDS 204
P+PV D EF L + AA N+ KNRY NI PYD
Sbjct: 10 PLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDH 69
Query: 205 SRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVML 264
SR L PV+ SDY+NA++I GY ++IA QGP TV+DFWRM WE T IVM+
Sbjct: 70 SRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMV 129
Query: 265 TQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR------GGEHR 318
T E+ KC +YWP DQ ++ +S++DV + + + + + R
Sbjct: 130 TNLKERKECKCAQYWP-DQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQR 188
Query: 319 MISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTV 378
+I+ +HFT+WPD GVP +P ++ F+ + IVVHCSAGVGRTGTF+ +D +
Sbjct: 189 LITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAM 248
Query: 379 LQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGG 428
L + VD+ V +R QR MVQ+ QY FIY+ + + G
Sbjct: 249 LDMM---HSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYG 295
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 376 bits (967), Expect = e-130
Identities = 117/288 (40%), Positives = 152/288 (52%), Gaps = 13/288 (4%)
Query: 148 SHPIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPY 202
S I V E+E L G+ A+ NR KNRY NI Y
Sbjct: 1 SMAIRVADLLQHITQMKRGQGYGFKEEYEALPE-GQTASWDTAKEDENRNKNRYGNIISY 59
Query: 203 DSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIV 262
D SR +L +D + SDY+NANYI GY PR YIATQGP+ TV DFWRM W+ + +IV
Sbjct: 60 DHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIV 119
Query: 263 MLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCRGG--EHRMI 320
M+T +E R KC +YWP D DI+++L + +V+ + + G E R +
Sbjct: 120 MVTNLVEVGRVKCVRYWPDDT--EVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIREL 177
Query: 321 SHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQ 380
+HFT+WPD GVP L+ FV + P PIVVHCSAG GRTG FIA+DT+L
Sbjct: 178 RLFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLD 237
Query: 381 RLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGG 428
E G VDI V LR QRV +VQ+ QY F+++ + G
Sbjct: 238 MA---ENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCG 282
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 375 bits (965), Expect = e-129
Identities = 132/290 (45%), Positives = 171/290 (58%), Gaps = 18/290 (6%)
Query: 148 SHPIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPY 202
S PI + F ++ E+E+LK VGR Q A L NR KNRY NI PY
Sbjct: 6 SCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPY 65
Query: 203 DSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIV 262
D++R KL GSDY+NA+YI G R+YI TQGPL T DDFW+M WE IV
Sbjct: 66 DATRVKLSG-----GSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIV 120
Query: 263 MLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR---GGEHRM 319
M+TQC+EK R KC YWP+DQ + D+ + + W + E ++C HR+
Sbjct: 121 MVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRL 180
Query: 320 ISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHI--SPAQHPIVVHCSAGVGRTGTFIALDT 377
I H+H+T WPD GVP + +L+ FV + R +I SP P VVHCSAGVGRTGTFIALD
Sbjct: 181 IRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDR 240
Query: 378 VLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQG 427
+LQ+L + SVDI VH LR RV MVQ+ QY ++++CV+ L+
Sbjct: 241 ILQQL---DSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA 287
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 372 bits (957), Expect = e-128
Identities = 92/277 (33%), Positives = 140/277 (50%), Gaps = 15/277 (5%)
Query: 169 EFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYI-- 226
+F+ L G + A+L N KNRY +I PYD++R L+ DY+NANYI
Sbjct: 50 QFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVILKG-----NEDYINANYINM 104
Query: 227 --GGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQH 284
QYIA QGPL T DFW+M WE + +VMLT +E+ R KC++YWP
Sbjct: 105 EIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEPTG 164
Query: 285 PMRCADIEISLQDVCHYGSWVLSELRMC--RGGEHRMISHYHFTTWPDSGVPSSPNTLVS 342
+++ +++ ++ + E R ++ + WPD GVP + +
Sbjct: 165 SSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSDFLD 224
Query: 343 FVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRR 402
FV R + + P+VVHCSAG+GRTG I ++T + + E V L IV +R
Sbjct: 225 FVCHVRNKRAGKEEPVVVHCSAGIGRTGVLITMETAMCLI---ECNQPVYPLDIVRTMRD 281
Query: 403 QRVLMVQSLAQYAFIYECV-QVYLQGGVRHEERQIQN 438
QR +M+Q+ +QY F+ E + +VY +G V+
Sbjct: 282 QRAMMIQTPSQYRFVCEAILKVYEEGFVKPLTTSTNK 318
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 373 bits (959), Expect = e-128
Identities = 123/314 (39%), Positives = 172/314 (54%), Gaps = 15/314 (4%)
Query: 148 SHPIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPY 202
S I V F A E+EDLK +G P AAE+ NR KNRY N+ PY
Sbjct: 23 SKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLPKYAAEIAENRGKNRYNNVLPY 82
Query: 203 DSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIV 262
D SR KL DY+NANY+ GY S + +IATQGPL +T+ DFWRM WE AIV
Sbjct: 83 DISRVKLSV-QTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIV 141
Query: 263 MLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR--GGEHRMI 320
MLT+C+E+ R KC +YWP + DI +++ W + + + E +
Sbjct: 142 MLTKCVEQGRTKCEEYWP-SKQAQDYGDITVAMTSEVVLPEWTIRDFVVKNMQSSESHPL 200
Query: 321 SHYHFTTWPDSGVPSSPNTLVSFVLSFRTHIS--PAQHPIVVHCSAGVGRTGTFIALDTV 378
+HFT+WPD GVP + + L++F R ++ P + PI+VHCSAGVGRTGTFIA+D +
Sbjct: 201 RQFHFTSWPDHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRL 260
Query: 379 LQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECV-QVYLQGGVRHEERQIQ 437
+ ++ E +VD+ IV+ LR R LMVQ+ QY F+ +CV + + Q
Sbjct: 261 IYQI---ENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIIRAQKDSKVDLIYQ 317
Query: 438 NNEAIERDEGVDDL 451
N A+ E ++ +
Sbjct: 318 NTTAMTIYENLERV 331
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 365 bits (940), Expect = e-126
Identities = 91/269 (33%), Positives = 135/269 (50%), Gaps = 15/269 (5%)
Query: 166 IAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANY 225
+ ++FE L G T A+L N KNRY ++ PYD++R LQ DY+NA+Y
Sbjct: 20 VLIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQG-----NEDYINASY 74
Query: 226 I----GGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPS 281
+ +YIATQGPL T FW++ W+ + IVMLT E+ R KC++YWP
Sbjct: 75 VNMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPD 134
Query: 282 DQHPMRCADIEISLQDVCHYGSWVLSELRMCRG--GEHRMISHYHFTTWPDSGVPSSPNT 339
M I Q ++V E+ + GE ++H + WPD GVP +
Sbjct: 135 PPDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSD 194
Query: 340 LVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHG 399
+ FV R+ P++VHCSAG+GRTG + ++T + E + L IV
Sbjct: 195 FLEFVNYVRSL-RVDSEPVLVHCSAGIGRTGVLVTMETAMCLT---ERNLPIYPLDIVRK 250
Query: 400 LRRQRVLMVQSLAQYAFIYECVQVYLQGG 428
+R QR +MVQ+ +QY F+ E + + G
Sbjct: 251 MRDQRAMMVQTSSQYKFVCEAILRVYEEG 279
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 365 bits (940), Expect = e-125
Identities = 92/277 (33%), Positives = 142/277 (51%), Gaps = 19/277 (6%)
Query: 166 IAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANY 225
I E+ED++ + N KNRY ++ D +R KL +DY+NA++
Sbjct: 28 IYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASF 87
Query: 226 IGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQH- 284
+ GY YI TQGPL +T DFW M WE + IVM T+ E R KC +YWP ++
Sbjct: 88 MDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDS 147
Query: 285 PMRCADIEISLQDVCHYGSWVLSELRMC--RGGEHRMISHYHFTTWPDSGVPSSPNTLVS 342
+R + ++ V + + + L + + R ++H+ F +WPD GVPSS +L+
Sbjct: 148 RIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLID 207
Query: 343 FVLSFRTHIS-------------PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAG 389
F+ R S + PIVVHCSAG+GRTGTF +LD L +L E G
Sbjct: 208 FLRVVRNQQSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQL---EELG 264
Query: 390 SVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
++++ + V +R QR +Q+ QY F Y+ + + +
Sbjct: 265 TLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAE 301
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 363 bits (934), Expect = e-124
Identities = 90/294 (30%), Positives = 139/294 (47%), Gaps = 13/294 (4%)
Query: 147 CSHPIPVTLFCTMTL-----DPDWIAVEFEDLKSV-GRGQPTTAAELRCNRPKNRYTNIF 200
+ I + + D +A E++ L + A+ N KNR+ +
Sbjct: 7 ANMDISTGHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHPDFL 66
Query: 201 PYDSSRYKLQPVDDEEGSDYVNANYI-GGYLSPRQYIATQGPLCSTVDDFWRMCWESRTP 259
PYD +R KL+ SDY+NA+ I YIATQGPL T+ DFW+M WES
Sbjct: 67 PYDHARIKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCT 126
Query: 260 AIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISL-QDVCHYGSWVLSELRMC--RGGE 316
IVMLT +E +C +YWP D+ E++L + +++ + + E
Sbjct: 127 VIVMLTPLVEDGVKQCDRYWP-DEGASLYHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQE 185
Query: 317 HRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALD 376
R ++ +HF +WP G P+S L+ F PI+VHCS G GRTGT+I +D
Sbjct: 186 TRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILID 245
Query: 377 TVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVR 430
VL R+ ++G +DI + +R QR +V+S Q+ F V + ++
Sbjct: 246 MVLNRM--AKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNAILK 297
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 362 bits (932), Expect = e-124
Identities = 96/296 (32%), Positives = 147/296 (49%), Gaps = 15/296 (5%)
Query: 138 PSQDVTLHNC---SHPIPVTLFCTMTLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKN 194
P + V + S + + + + EF ++ ++ + KN
Sbjct: 3 PREKVAMEYLQSASRVLTRSQLRDVVASSHLLQSEFMEIPM--NFVDPKEIDIPRHGTKN 60
Query: 195 RYTNIFPYDSSRYKLQPVD-DEEGSDYVNANYIGGYLSP-RQYIATQGPLCSTVDDFWRM 252
RY I P SR L+P + + S Y+NANYI GY + +IATQGP+ +TV+DFW+M
Sbjct: 61 RYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKAFIATQGPMINTVNDFWQM 120
Query: 253 CWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMC 312
W+ +P IVM+T+ EK+ KC YWP +E+ + V ++ + L +
Sbjct: 121 VWQEDSPVIVMITKLKEKNE-KCVLYWPEK--RGIYGKVEVLVTGVTECDNYTIRNLVLK 177
Query: 313 RGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHI--SPAQHPIVVHCSAGVGRTG 370
+G + + HY +T+WPD P S L+ +L S + P+VVHCSAG+GRTG
Sbjct: 178 QGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTG 237
Query: 371 TFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
FIA Q+L + G VD L IV LR R MVQ+ QY F++ + ++
Sbjct: 238 CFIATSIGCQQL---KEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHALCLFES 290
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 363 bits (933), Expect = e-124
Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 24/297 (8%)
Query: 150 PIPVTLFCTM---TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSR 206
+P+ L+ + E+E + + A L N ++R + PY+ +R
Sbjct: 28 RVPMDERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENR 87
Query: 207 YKLQPVDDEEGSDYVNANYIGGYLSPRQ--YIATQGPLCSTVDDFWRMCWESRTPAIVML 264
+L P + + Y+NA++I + + YIATQGPL T DFW+M WE I M+
Sbjct: 88 VELIPTKEN-NTGYINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMV 146
Query: 265 TQCIEKHRDKCYKYWP---SDQHPMRCADIEISLQDVCHYGSWVLSELRMC--RGGEHRM 319
T E R K ++YWP S +++ + + + L++ G+ R
Sbjct: 147 TAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERT 206
Query: 320 ISHYHFTTWPDSGVPSSPNTLVSFVLSFRTH----------ISPAQHPIVVHCSAGVGRT 369
+ H +T WPD G P +S++ ++ PIVVHCSAGVGRT
Sbjct: 207 VWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRT 266
Query: 370 GTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
G I + ++ L E V++ ++ LR QR+ M+Q++AQY F+Y+ + +LQ
Sbjct: 267 GVLILSELMIYCL---EHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ 320
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 361 bits (930), Expect = e-124
Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 11/284 (3%)
Query: 169 EFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGG 228
++D++ P A+L N+ +NRY ++ P+D SR KL +E +DY+NA+ I
Sbjct: 25 IYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKM 80
Query: 229 YLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRC 288
+ R YI TQGPL +T FW M WE ++ +VML + +EK KC +YWP +
Sbjct: 81 EEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMI 140
Query: 289 A---DIEISLQDVCHYGSWVLSELRMCR--GGEHRMISHYHFTTWPDSGVPSSPNTLVSF 343
+++++L + + +L + E R I H+H+TTWPD GVP SP + ++F
Sbjct: 141 FEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLNF 200
Query: 344 VLSFRTHIS--PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLR 401
+ R S P P+VVHCSAG+GR+GTF DT L + + SVDI +++ +R
Sbjct: 201 LFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMR 260
Query: 402 RQRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQNNEAIERD 445
+ R+ ++Q+ Q F Y V + + Q Q E D
Sbjct: 261 KFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHED 304
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 359 bits (925), Expect = e-124
Identities = 101/247 (40%), Positives = 144/247 (58%), Gaps = 7/247 (2%)
Query: 184 AAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLC 243
L N KNR I PY+ +R + EE +DYVNA++I GY YIA+QGPL
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLL 62
Query: 244 STVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGS 303
T++DFWRM WE ++ +IVMLT+ E+ ++KC +YWPSD + DI + L+ S
Sbjct: 63 HTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDG-LVSYGDITVELKKEEECES 121
Query: 304 WVLSELRMC--RGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFR-THISPAQHPIVV 360
+ + +L + R + R I +HF WP+ G+PS +++ + + + HPI V
Sbjct: 122 YTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQQSGNHPITV 181
Query: 361 HCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYEC 420
HCSAG GRTGTF AL TVL+R+ + G +D+ + V LR QR MVQ+L QY F Y+
Sbjct: 182 HCSAGAGRTGTFCALSTVLERV---KAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKV 238
Query: 421 VQVYLQG 427
VQ Y+
Sbjct: 239 VQEYIDA 245
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 361 bits (930), Expect = e-124
Identities = 100/277 (36%), Positives = 152/277 (54%), Gaps = 21/277 (7%)
Query: 169 EFEDLKSVGRGQ--PTTAAELRCNRPKNRYTNIFPYDSSRYKLQPV--DDEEGSDYVNAN 224
+FE+++ + N+ KNRY NI YD SR KL+P+ D + SDY+NAN
Sbjct: 44 DFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINAN 103
Query: 225 YIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQH 284
Y+ GY + YIATQGPL ST +DFWRM WE T IVM+T +EK R KC +YWP ++
Sbjct: 104 YVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWP-TEN 162
Query: 285 PMRCADIEISLQDVCHYGSWVLSELRMCR-------------GGEHRMISHYHFTTWPDS 331
+I ++L+ + + + + R++ YH+T WPD
Sbjct: 163 SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDM 222
Query: 332 GVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSV 391
GVP +++FV P P++VHCSAGVGRTGT+I +D++LQ++ + +V
Sbjct: 223 GVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVIDSMLQQI---KDKSTV 279
Query: 392 DILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGG 428
++L + +R QR +VQ+ QY FI++ + + G
Sbjct: 280 NVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGK 316
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 361 bits (928), Expect = e-123
Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 13/283 (4%)
Query: 169 EFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGG 228
+ ++++ P A+ NR +NRY ++ PYD SR KLQ + +DY+NA+ +
Sbjct: 21 LYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAE----NDYINASLVDI 76
Query: 229 YLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRC 288
+ R YI TQGPL +T FW M W+ +T A+VML + +EK KC +YWP+D M
Sbjct: 77 EEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLF 136
Query: 289 A--DIEISLQDVCHYGSWVLSELRMC--RGGEHRMISHYHFTTWPDSGVPSSPNTLVSFV 344
+ L + + L++ GE R ISH+H+TTWPD GVP SP + ++F+
Sbjct: 137 KETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFL 196
Query: 345 LSFRTHIS--PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRR 402
R S P P V+HCSAG+GR+GTF +DT L + E ++I +++ +R+
Sbjct: 197 FKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLM---EKGDDINIKQVLLNMRK 253
Query: 403 QRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQNNEAIERD 445
R+ ++Q+ Q F Y + + Q + E + D
Sbjct: 254 YRMGLIQTPDQLRFSYMAIIEGAKCIKGDSSIQKRWKELSKED 296
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 371 bits (954), Expect = e-123
Identities = 109/299 (36%), Positives = 157/299 (52%), Gaps = 12/299 (4%)
Query: 150 PIPVTLFCT-----MTLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDS 204
PI + + + EF+ + V P A N+ KNRY +I PYD
Sbjct: 9 PIHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDY 68
Query: 205 SRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVML 264
+R +L ++ + GS+Y+NA+YI G+ PR+YIA QGP TVDDFWRM WE + IVM+
Sbjct: 69 NRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMV 128
Query: 265 TQCIEKHRDKCYKYWPS-DQHPMRCADIEISLQDVCHYGSWVLSELRMCR---GGEHRMI 320
T+C E +R+KC +YWPS ++ D+ + + +++ +L + R +
Sbjct: 129 TRCEEGNRNKCAEYWPSMEEGTRAFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREV 188
Query: 321 SHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQ 380
+H FT+WPD GVP P+ L+ + PIVVH SAGVGRTGT+I +D +L+
Sbjct: 189 THIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHSSAGVGRTGTYIGIDAMLE 248
Query: 381 RLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQNN 439
L E VD+ V LRRQR LMVQ AQY I++ + Y Q G +
Sbjct: 249 GL---EAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGETEVNLSELHP 304
Score = 327 bits (840), Expect = e-106
Identities = 84/323 (26%), Positives = 137/323 (42%), Gaps = 36/323 (11%)
Query: 137 HPSQDVTLHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRY 196
+V L + +P + EF+ L S + N+ KNR
Sbjct: 292 FGETEVNLSELHPYLHNMKKRDPPSEPSPLEAEFQRLPSYRSWRTQHIGNQEENKSKNRN 351
Query: 197 TNIFPYDSSRYKLQ-------------------PVDDEEGSDYVNANYIGGYLSPRQYIA 237
+N+ PYD +R L+ D EE S Y+NA++I Y P IA
Sbjct: 352 SNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINASFIMSYWKPEVMIA 411
Query: 238 TQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQD 297
QGPL T+ DFW+M ++ + IVMLT+ ++ C +YW + DIE+ L+D
Sbjct: 412 AQGPLKETIGDFWQMIFQRKVKVIVMLTELKHGDQEICAQYWGEGK--QTYGDIEVDLKD 469
Query: 298 VCHYGSWVLSELRMC--RGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHIS--- 352
++ L + + + R + Y +T W +P+ P L+S + + +
Sbjct: 470 TDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPKELISMIQVVKQKLPQKN 529
Query: 353 -------PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRV 405
P+++HC G +TG F AL +L+ E VDI ++V LR+ R+
Sbjct: 530 SSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLESA---ETEEVVDIFQVVKALRKARL 586
Query: 406 LMVQSLAQYAFIYECVQVYLQGG 428
MV + QY F+Y+ +
Sbjct: 587 GMVSTFEQYQFLYDVIASTYPAQ 609
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 369 bits (948), Expect = e-123
Identities = 110/302 (36%), Positives = 148/302 (49%), Gaps = 14/302 (4%)
Query: 148 SHPIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPY 202
PIPV D EF L S A NR KNRY NI P
Sbjct: 7 YFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPN 66
Query: 203 DSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIV 262
D SR L +D SDY+NA+YI GY ++IA QGP TV+DFWRM WE ++ IV
Sbjct: 67 DHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIV 126
Query: 263 MLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR-----GGEH 317
MLT E+ +KC++YWP DQ +I + ++D + + + +
Sbjct: 127 MLTNLKERKEEKCHQYWP-DQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAP 185
Query: 318 RMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDT 377
R++S HFT+WPD GVP +P ++ F+ +T PIVVHCSAGVGRTGTFI +D
Sbjct: 186 RLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDA 245
Query: 378 VLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQ 437
++ + VD+ V +R QR MVQ+ QY FIY+ + Y G +
Sbjct: 246 MMAMM---HAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSL 302
Query: 438 NN 439
Sbjct: 303 EK 304
Score = 350 bits (899), Expect = e-115
Identities = 99/304 (32%), Positives = 158/304 (51%), Gaps = 13/304 (4%)
Query: 132 RRDTCHPSQDVTLHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKSVG-RGQPTTAAELRCN 190
+ ++ + + + T D + EF L +V + L N
Sbjct: 287 LEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPAN 346
Query: 191 RPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFW 250
K R I PYD +R L +E +DY+NA++I GY +IATQGPL TV+DFW
Sbjct: 347 MKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFW 406
Query: 251 RMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELR 310
RM WE ++ IVMLT+ E+ +DKCY+YWP++ + +I I +++ + + +
Sbjct: 407 RMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEG-SVTHGEITIEIKNDTLSEAISIRDFL 465
Query: 311 MC-------RGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQH-PIVVHC 362
+ +G + R++ +HF WP+ G+P+ ++ + + + + PI VHC
Sbjct: 466 VTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHC 525
Query: 363 SAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQ 422
SAG GRTGTFIAL +L+R+ + G +D+ + V LR QR MVQ+L QY F Y+ VQ
Sbjct: 526 SAGAGRTGTFIALSNILERV---KAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQ 582
Query: 423 VYLQ 426
++
Sbjct: 583 DFID 586
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 358 bits (922), Expect = e-122
Identities = 97/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%)
Query: 161 LDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDY 220
LD + E E+L+ + + + NR KNRY NI PYD++R L Y
Sbjct: 46 LDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLGD-----EGGY 100
Query: 221 VNANYIGGYLSPRQ--YIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKY 278
+NA++I + + YIA QGPL +TV DFW+M WE ++ I M+TQ +E + KC +Y
Sbjct: 101 INASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRY 160
Query: 279 WPS--DQHPMRCADIEISLQDVCHYGSWVLSELRMC--RGGEHRMISHYHFTTWPDSGVP 334
WP+ + M + ++L + +V+ + + + E R ISH +FT WPD P
Sbjct: 161 WPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTP 220
Query: 335 SSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDIL 394
S P+ L++F+ R PI+ HCSAG+GR+GT I +D VL + DI
Sbjct: 221 SQPDDLLTFISYMRH--IHRSGPIITHCSAGIGRSGTLICIDVVLGLI---SQDLDFDIS 275
Query: 395 RIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRHEER 434
+V +R QR MVQ+ QY F Y+ + L EE+
Sbjct: 276 DLVRCMRLQRHGMVQTEDQYIFCYQVILYVLTRLQAEEEQ 315
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 357 bits (919), Expect = e-122
Identities = 100/279 (35%), Positives = 143/279 (51%), Gaps = 16/279 (5%)
Query: 169 EFEDLK--SVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVD-DEEGSDYVNANY 225
EFE L+ + + N+ KNRY NI P+D +R L D +E SDY+NAN
Sbjct: 37 EFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANI 96
Query: 226 I--------GGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYK 277
I + YIATQG L +TV+DFWRM ++ + IVM T+ +E+ + KC K
Sbjct: 97 IMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVK 156
Query: 278 YWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR---GGEHRMISHYHFTTWPDSGVP 334
YWP + + + + L EL++ + G R + YHF TWPD GVP
Sbjct: 157 YWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVP 216
Query: 335 SSPNTLVSFVLSFRTHIS--PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVD 392
S P ++ F+ P+VVHCSAG+GRTGTFI +D ++ + +D
Sbjct: 217 SDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDID 276
Query: 393 ILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRH 431
+ + + +R QR MVQ+ AQY FIY VQ Y++ R
Sbjct: 277 VPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRR 315
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 355 bits (912), Expect = e-121
Identities = 100/273 (36%), Positives = 142/273 (52%), Gaps = 13/273 (4%)
Query: 169 EFEDLKS--VGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVD-DEEGSDYVNANY 225
EFE L+ V + N+ KNRY NI P+D SR LQ D + GSDY+NANY
Sbjct: 5 EFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANY 64
Query: 226 IGGYLS-----PRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWP 280
I L + YIA+QG L +TV+DFW+M W+ + IVM T+ +EK R+KC YWP
Sbjct: 65 IKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 124
Query: 281 SDQHPMRCADIEISLQDVCHYGSWVLSELRMCR---GGEHRMISHYHFTTWPDSGVPSSP 337
++ + L L++ G R I HY + +WPD GVPS P
Sbjct: 125 EVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEP 184
Query: 338 NTLVSFVLSFRTHIS--PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILR 395
++SF+ P PI+VH SAG+GRTGT I +D +++ + +DI +
Sbjct: 185 GGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQK 244
Query: 396 IVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGG 428
+ +R QR MVQ+ AQY FIY + +++
Sbjct: 245 TIQMVRAQRSGMVQTEAQYKFIYVAIAQFIETT 277
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 363 bits (935), Expect = e-121
Identities = 106/255 (41%), Positives = 146/255 (57%), Gaps = 7/255 (2%)
Query: 169 EFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGG 228
E+E + G+ + L N+PKNRY N+ YD SR L +D GSDY+NANYI G
Sbjct: 23 EYESIDP-GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDG 81
Query: 229 YLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRC 288
Y YIATQGPL T+ DFWRM WE RT +VM+T+ EK R KC +YWP + C
Sbjct: 82 YRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWP-ARGTETC 140
Query: 289 ADIEISLQDVCHYGSWVLSELRMCRGG--EHRMISHYHFTTWPDSGVPSSPNTLVSFVLS 346
I+++L D ++ + + + G E R + + F WPD GVP P +++F+
Sbjct: 141 GLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRR 200
Query: 347 FRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVL 406
+ P+VVHCSAGVGRTG FI +D +L+R+ + +VDI V +R QR
Sbjct: 201 VKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERM---KHEKTVDIYGHVTCMRSQRNY 257
Query: 407 MVQSLAQYAFIYECV 421
MVQ+ QY FI+E +
Sbjct: 258 MVQTEDQYVFIHEAL 272
Score = 340 bits (874), Expect = e-112
Identities = 105/305 (34%), Positives = 149/305 (48%), Gaps = 8/305 (2%)
Query: 128 MSVTRRDTCHPSQDVTLHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKSVGRGQPTTAAEL 187
++ TC ++ + +H + S +A L
Sbjct: 270 EALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFISANL 329
Query: 188 RCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVD 247
CN+ KNR NI PY+ +R LQP+ EGSDY+NA+++ GY + YIATQGPL + +
Sbjct: 330 PCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTE 389
Query: 248 DFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLS 307
DFWRM WE + IVMLT+ E R+KC++YWP+++ R + + ++L
Sbjct: 390 DFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAER-SARYQYFVVDPMAEYNMPQYILR 448
Query: 308 ELRMC--RGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTH--ISPAQHPIVVHCS 363
E ++ R G+ R I + FT WP+ GVP + + F+ PI VHCS
Sbjct: 449 EFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCS 508
Query: 364 AGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQV 423
AGVGRTG FI L VL+R+ G VD+ + V LR QR MVQ+ QY Y
Sbjct: 509 AGVGRTGVFITLSIVLERM---RYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALE 565
Query: 424 YLQGG 428
YL
Sbjct: 566 YLGSF 570
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 352 bits (905), Expect = e-120
Identities = 99/286 (34%), Positives = 137/286 (47%), Gaps = 11/286 (3%)
Query: 144 LHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYD 203
L HP+ P + EF + ++ + K+RY I P
Sbjct: 24 LRTAGHPLTRWALQRQPPSPKQLEEEFLKIP--SNFVSPEDLDIPGHASKDRYKTILPNP 81
Query: 204 SSRYKLQPVDDEEGSDYVNANYIGGYLSP-RQYIATQGPLCSTVDDFWRMCWESRTPAIV 262
SR L +E DY+NANYI GY + YIATQGP+ +TV DFW M W+ IV
Sbjct: 82 QSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDFWEMVWQEEVSLIV 141
Query: 263 MLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCRGGEHRMISH 322
MLTQ E ++KC YWP+++ +I +QD+ + + +L + E R + H
Sbjct: 142 MLTQLREG-KEKCVHYWPTEE--ETYGPFQIRIQDMKECPEYTVRQLTIQYQEERRSVKH 198
Query: 323 YHFTTWPDSGVPSSPNTLVSFVLSFRTHI--SPAQHPIVVHCSAGVGRTGTFIALDTVLQ 380
F+ WPD P S L+ V + PIVVHCSAG+GRTG FIA Q
Sbjct: 199 ILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQ 258
Query: 381 RLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
+L + G VDIL IV LR R M+Q+ QY F++ + +Y
Sbjct: 259 QL---KARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLALYAG 301
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 351 bits (903), Expect = e-120
Identities = 104/291 (35%), Positives = 144/291 (49%), Gaps = 13/291 (4%)
Query: 141 DVTLHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIF 200
++ + S + LDP + EF ++ ++ KNRY I
Sbjct: 17 NLYFQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNF--VDPKEYDIPGLVRKNRYKTIL 74
Query: 201 PYDSSRYKLQPVD-DEEGSDYVNANYIGGYLSP-RQYIATQGPLCSTVDDFWRMCWESRT 258
P SR L D D+ S Y+NANYI GY + YIATQGP+ STV DFWRM W+ T
Sbjct: 75 PNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKVYIATQGPIVSTVADFWRMVWQEHT 134
Query: 259 PAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCRGGEHR 318
P IVM+T E +KC +YWP + + +EI++Q V H + L + + G E R
Sbjct: 135 PIIVMITNIEEM-NEKCTEYWPEE--QVAYDGVEITVQKVIHTEDYRLRLISLKSGTEER 191
Query: 319 MISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHI---SPAQHPIVVHCSAGVGRTGTFIAL 375
+ HY FT+WPD P L+ V P PI+VH SAG+GRTG FIA
Sbjct: 192 GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPIIVHSSAGIGRTGCFIAT 251
Query: 376 DTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
Q+L G VDIL+ LR+ R M+Q+ QY F++ + +Y +
Sbjct: 252 SICCQQL---RQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVMSLYEK 299
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 348 bits (894), Expect = e-118
Identities = 77/284 (27%), Positives = 112/284 (39%), Gaps = 19/284 (6%)
Query: 169 EFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYK--LQPVDDEEGS-DYVNANY 225
EF L+ + NR KNRY +I + + Y L+ V + G Y+N N
Sbjct: 24 EFVQLQRQENPRNINFTTSLKNRHKNRYLDILANEETIYPPVLKAVGAQPGRYPYINGNL 83
Query: 226 IGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHP 285
I P ++A Q P+ V DF E + +VMLT+ E K +YWP ++
Sbjct: 84 ID-LDLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEED 142
Query: 286 MR----CADIEISLQDVCHYGSWVLSELRMCR--------GGEHRMISHYHFTTWPDSGV 333
I + V +EL + R G + + WPD GV
Sbjct: 143 SLSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPDHGV 202
Query: 334 PSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDI 393
P S + + + PI+VHCSAG+GRTGT I L + +
Sbjct: 203 PESAASFDELLSVIKNC--VTTSPILVHCSAGIGRTGTLIGAYAALLHI-ERGILTDSTV 259
Query: 394 LRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQ 437
IV ++++R MVQ L QYA IY V L + +
Sbjct: 260 YSIVAAMKQKRFGMVQRLEQYAVIYMTVLGRLGVDISGLVSTLN 303
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 354 bits (909), Expect = e-116
Identities = 103/294 (35%), Positives = 157/294 (53%), Gaps = 26/294 (8%)
Query: 150 PIPVTLFCTM-----TLDPDWIAVEFEDLKSVGRGQ--PTTAAELRCNRPKNRYTNIFPY 202
IPV F + + + +FE+++ + N+ KNRY NI Y
Sbjct: 2 AIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAY 61
Query: 203 DSSRYKLQPV--DDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPA 260
D SR KL+P+ D + SDY+NANY+ GY + YIATQGPL ST +DFWRM WE T
Sbjct: 62 DHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGI 121
Query: 261 IVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR------- 313
IVM+T +EK R KC +YWP++ +I ++L+ + + + +
Sbjct: 122 IVMITNLVEKGRRKCDQYWPTEN-SEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQ 180
Query: 314 ------GGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVG 367
R++ YH+T WPD GVP +++FV P P++VHCSAGVG
Sbjct: 181 KGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVG 240
Query: 368 RTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECV 421
RTGT+I +D++LQ++ + +V++L + +R QR +VQ+ QY FI++ +
Sbjct: 241 RTGTYIVIDSMLQQI---KDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDAL 291
Score = 334 bits (859), Expect = e-109
Identities = 74/325 (22%), Positives = 126/325 (38%), Gaps = 15/325 (4%)
Query: 134 DTCHPSQDVTLHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKSV-GRGQPTTAAELRCNRP 192
+ + N H ++ + +F+ + + +A+ CN+
Sbjct: 293 EAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKE 352
Query: 193 KNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVDDFWRM 252
KNR +++ P + +R L P+ +G+DY+NA+YI GY ++I TQ PL T DFWRM
Sbjct: 353 KNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRM 412
Query: 253 CWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLS----- 307
W+ IVML D+ YWPS + M C ++L
Sbjct: 413 IWDHNAQIIVMLPDNQSLAEDEF-VYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIH 471
Query: 308 --ELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAG 365
L + + H+ WP+ P S + + P +VH G
Sbjct: 472 DFILEATQDDYVLEVRHFQCPKWPNPDAPISS--TFELINVIKEEALTRDGPTIVHDEYG 529
Query: 366 VGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYL 425
G AL T+ Q+L E +VD+ ++ + R + + QY FIY+ + +
Sbjct: 530 AVSAGMLCALTTLSQQL---ENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAMLSLV 586
Query: 426 QGG-VRHEERQIQNNEAIERDEGVD 449
+ + N A+ + D
Sbjct: 587 STKENGNGPMTVDKNGAVLIADESD 611
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 347 bits (891), Expect = e-115
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 16/274 (5%)
Query: 169 EFEDLK--SVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVD-DEEGSDYVNANY 225
EFE L+ + + N+ KNRY NI P+D +R L D +E SDY+NAN
Sbjct: 250 EFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANI 309
Query: 226 I--------GGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYK 277
I + YIATQG L +TV+DFWRM ++ + IVM T+ +E+ + KC K
Sbjct: 310 IMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVK 369
Query: 278 YWPSDQHPMRCADIEISLQDVCHYGSWVLSELRMCR---GGEHRMISHYHFTTWPDSGVP 334
YWP + + + + L EL++ + G R + YHF TWPD GVP
Sbjct: 370 YWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVP 429
Query: 335 SSPNTLVSFVLSFRTHIS--PAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVD 392
S P ++ F+ P+VVHCSAG+GRTGTFI +D ++ + +D
Sbjct: 430 SDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDID 489
Query: 393 ILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQ 426
+ + + +R QR MVQ+ AQY IY VQ Y++
Sbjct: 490 VPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYIE 523
Score = 57.9 bits (140), Expect = 3e-09
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 28/93 (30%)
Query: 335 SSPNTLVSFVLSFRTHISPAQHP-----IVVHCSAG---VGRTGTFIALDTVLQRLYNSE 386
S P V V + +++ C VG F +L +++
Sbjct: 142 SHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHY---- 197
Query: 387 GAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYE 419
++ MV++L + +
Sbjct: 198 ----------------KKNPMVETLGTVLQLKQ 214
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 347 bits (892), Expect = e-115
Identities = 106/321 (33%), Positives = 153/321 (47%), Gaps = 23/321 (7%)
Query: 121 IRGWLPRMSVTRRDTCHPSQDVTLHNCSHPIPVTLFCTMTLDPDWIAVEFEDLKS--VGR 178
+R V D + ++ S F EFE L+ V
Sbjct: 209 LRQPYYATRVNAADIENRVLELNKKQESEDTAKAGF----------WEEFESLQKQEVKN 258
Query: 179 GQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVD-DEEGSDYVNANYIGGYL-----SP 232
+ N+ KNRY NI P+D SR LQ D + GSDY+NANYI L +
Sbjct: 259 LHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENA 318
Query: 233 RQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIE 292
+ YIA+QG L +TV+DFW+M W+ + IVM T+ +EK R+KC YWP
Sbjct: 319 KTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYS 378
Query: 293 ISLQDVCHYGSWVLSELRMCR---GGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRT 349
++ + L L++ G R I HY + +WPD GVPS P ++SF+
Sbjct: 379 VTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQ 438
Query: 350 HI--SPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLM 407
P PI+VHCSAG+GRTGT I +D +++ + +DI + + +R QR M
Sbjct: 439 RQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGM 498
Query: 408 VQSLAQYAFIYECVQVYLQGG 428
VQ+ AQY FIY + +++
Sbjct: 499 VQTEAQYKFIYVAIAQFIETT 519
Score = 101 bits (252), Expect = 3e-23
Identities = 27/181 (14%), Positives = 41/181 (22%), Gaps = 13/181 (7%)
Query: 273 DKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSE--LRMCRGGEHRMISHYHFTTWPD 330
+ Y I L+ + GG+ + W
Sbjct: 74 ELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-T 132
Query: 331 SGVPSSPNTLVSFVLSFRTHISPAQH-------PIVVHCSAGVGRTGTFIALDTVLQRLY 383
V S + FVLS + A I V C G G D++ +
Sbjct: 133 FLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV- 191
Query: 384 NSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQNNEAIE 443
E I R + A I V + + + E E
Sbjct: 192 --EHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFE 249
Query: 444 R 444
Sbjct: 250 S 250
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 346 bits (890), Expect = e-114
Identities = 104/330 (31%), Positives = 159/330 (48%), Gaps = 15/330 (4%)
Query: 130 VTRRDTCHPSQDVTLHNCSHPIPVTLFCTMTLDPDW-IAVEFEDLKS--VGRGQPTTAAE 186
V R + ++ + + + EFE L+ V +
Sbjct: 207 VYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQ 266
Query: 187 LRCNRPKNRYTNIFPYDSSRYKLQPVD-DEEGSDYVNANYIGGYL-----SPRQYIATQG 240
N+ KNRY NI P+D SR LQ D + GSDY+NANYI L + + YIA+QG
Sbjct: 267 RPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQG 326
Query: 241 PLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCH 300
L +TV+DFW+M W+ + IVM T+ +EK R+KC YWP ++
Sbjct: 327 CLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHD 386
Query: 301 YGSWVLSELRMCR---GGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQH- 356
+ L L++ G R I HY + +WPD GVPS P ++SF+ H
Sbjct: 387 TTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHA 446
Query: 357 -PIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYA 415
PI+VH SAG+GRTGT I +D +++ + +DI + + +R QR MVQ+ AQY
Sbjct: 447 GPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYK 506
Query: 416 FIYECVQVYLQGGVRHEERQIQNNEAIERD 445
FIY + +++ + + +Q+ + E +
Sbjct: 507 FIYVAIAQFIETT-KKKLEVLQSQKGQESE 535
Score = 100 bits (251), Expect = 6e-23
Identities = 26/181 (14%), Positives = 40/181 (22%), Gaps = 13/181 (7%)
Query: 273 DKCYKYWPSDQHPMRCADIEISLQDVCHYGSWVLSE--LRMCRGGEHRMISHYHFTTWPD 330
+ Y I L+ + GG+ + W
Sbjct: 74 ELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKGEPW-T 132
Query: 331 SGVPSSPNTLVSFVLSFRTHI-------SPAQHPIVVHCSAGVGRTGTFIALDTVLQRLY 383
V S + FVLS + I V C G G D++ +
Sbjct: 133 FLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLV- 191
Query: 384 NSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQGGVRHEERQIQNNEAIE 443
E I R + A I V + + + E E
Sbjct: 192 --EHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFE 249
Query: 444 R 444
Sbjct: 250 S 250
Score = 28.0 bits (62), Expect = 7.0
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 169 EFEDLKSVGRGQPT-TAAELRCNRPKNRYTNIFPYDSSR 206
E+ ++ + A ++ K + R
Sbjct: 535 EYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKR 573
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 290 bits (745), Expect = 3e-96
Identities = 54/284 (19%), Positives = 88/284 (30%), Gaps = 46/284 (16%)
Query: 169 EFEDLKS--VGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYI 226
L++ + NR+ +I + + +NANYI
Sbjct: 38 RLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA----------DLNANYI 87
Query: 227 GGYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAIVMLTQCIEKHRDKC--YKYWPSDQH 284
+ IA Q PL S ++ +RM E+RTP + +L E + Y+
Sbjct: 88 QVG--NTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQ--- 142
Query: 285 PMRCADIEISLQDVCHYGSWVLSELRM------CRGGEHRMISHYHFTTWPDSGVPSS-- 336
I + + G M G + + H WPD SS
Sbjct: 143 SGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEV 202
Query: 337 PNTLVSFVLSFRTHI-------------SPAQHPIVVHCSAGVGRTGTFIALDTVLQRLY 383
L S V ++ V+H AGVGRT I +
Sbjct: 203 TKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQLIGAMCMNDSR- 261
Query: 384 NSEGAGSVDILRIVHGLRRQRV-LMVQSLAQYAFIYECVQVYLQ 426
+ + +V +R QR +MVQ Q + + + +
Sbjct: 262 ----NSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGR 301
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 288 bits (739), Expect = 2e-94
Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 32/274 (11%)
Query: 169 EFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYVNANYIGG 228
E E +++ G P T + + ++I ++ KL + VN G
Sbjct: 126 ELEKIEA-GAPMPQTMSGPTLGLARFAVSSIPINQQTQVKLS----DGMPVPVNTLTFDG 180
Query: 229 YLSPRQYIATQGPLC--STVDDFWRMCWESRTPAIVMLTQCIEKHRDKCYKYWPSDQHPM 286
+A P ++ +M E +V+LT + + + P +
Sbjct: 181 K---PVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQM---QAKQLPPYFRGSY 234
Query: 287 RCADIEISLQDVC---HYGSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSF 343
++ + Q V + +++ G + I H WPD S + L
Sbjct: 235 TFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYL 294
Query: 344 VLSFRTH--------ISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILR 395
+ S +H ++HC GVGRTGT A + ++ +
Sbjct: 295 ADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDN-------PHSNLEQ 347
Query: 396 IVHGLRRQRV-LMVQSLAQYAFIYECVQVYLQGG 428
+ R R M++ +Q+ + L
Sbjct: 348 VRADFRDSRNNRMLEDASQFVQLKAMQAQLLMTT 381
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 81.4 bits (201), Expect = 2e-18
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 316 EHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIAL 375
+ + H PD GVPS L+ + + +VHC G+GRTGT +A
Sbjct: 56 KKNGLQPLHIP-IPDGGVPSDSQ-----FLTIMKWLLSEKEGNLVHCVGGIGRTGTILAS 109
Query: 376 DTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVY 424
+L E A + +R R VQ+ Q F+ +
Sbjct: 110 YLILTEGLEVESA--------IDEVRLVRPGAVQTYEQEMFLLRVEGMR 150
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 55.1 bits (133), Expect = 2e-09
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 320 ISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVL 379
++ + PD P+ P+ + FV + + VHC+ G GRTGT +A
Sbjct: 57 LTLHRLR-IPDFCPPA-PDQIDRFVQIVDEANAR-GEAVGVHCALGFGRTGTMLAC---- 109
Query: 380 QRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYE 419
L G + D + + RR R +++ Q +++
Sbjct: 110 -YLVKERGLAAGDAIAEI---RRLRPGSIETYEQEKAVFQ 145
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 50.8 bits (121), Expect = 1e-07
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 17/130 (13%)
Query: 293 ISLQD---VCHYGSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRT 349
+ Y L +L G I +H D G P + + T
Sbjct: 76 FVFCTRGELSKYRVPNLLDLYQQCG-----IITHHHP-IADGGTPD-IASCCEIMEELTT 128
Query: 350 HISPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQ 409
+ ++H G+GR+ A +L LY S+ + + LR +Q
Sbjct: 129 CLK-NYRKTLIHSYGGLGRSCLVAAC--LL--LYLSDTISPEQAIDSLRDLRGSG--AIQ 181
Query: 410 SLAQYAFIYE 419
++ QY +++E
Sbjct: 182 TIKQYNYLHE 191
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 51.0 bits (121), Expect = 5e-07
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 24/113 (21%)
Query: 322 HYHFTTWPDSGVPSSP--NTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVL 379
HY+ D PS+ + ++F + PA + HC AG GRT ++A+ ++
Sbjct: 500 HYYRIAATDHIWPSAANIDEFINFTRT-----MPANAWLHFHCQAGAGRTTAYMAMYDMM 554
Query: 380 QR-----------------LYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYA 415
+ Y + + Q+ M++ QY
Sbjct: 555 KNPDVSLGDILSRQYLLGGNYVAYEIAKPKPDQWKADYYHQKAHMIEKFYQYV 607
Score = 50.2 bits (119), Expect = 1e-06
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 322 HYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQR 381
+Y T D P + F+ +++ P + HC AG+GRT F+ + +L+
Sbjct: 202 NYFRLTLQDHFRPD-DPDVDKFLEFYKS--LPKDAWLHYHCYAGMGRTTIFMVMHDILKN 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 9e-07
Identities = 65/442 (14%), Positives = 122/442 (27%), Gaps = 204/442 (46%)
Query: 53 QGT-------------TYRVKVRAFTSP------ELFTDTIYSPPV-STGKDV-SWLLV- 90
QG TY V V EL T+ + V + G ++ WL
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 91 -----MGFL--VLIVLPVLFI------IIRRKIVGVTSPRAGGIRGWLPRMSVTRRDTCH 137
+L + I P++ + ++ K++G T P G +R +L +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-P--GELRSYLKGATG------- 272
Query: 138 PSQDVTLHNCSHPIPVTLFCTMTLDPDWIAVEFED--------LKSVGRGQPTTAAELRC 189
S + + T W F L +G +RC
Sbjct: 273 ---------HSQGLVTAVAIAET--DSW--ESFFVSVRKAITVLFFIG---------VRC 310
Query: 190 NRPKNRYTNIFPYDSSRYKL--QPVDDEEGSDYVNANYIGGYLSPRQYIATQGPLCSTVD 247
+P S + +++ EG P
Sbjct: 311 YE-------AYPNTSLPPSILEDSLENNEGV----------------------P------ 335
Query: 248 DFWRMCWESRTPAIVMLT------QCIEKHRDKCYKYWPSDQHPMRCADIEISLQDVCHY 301
+P ML+ + ++ + +K + P+ + +EISL +
Sbjct: 336 ----------SP---MLSISNLTQEQVQDYVNKTNSHLPAGKQ------VEISLVN---- 372
Query: 302 GSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPA---QH-- 356
G ++ ++ SG P S L L+ R +P+ Q
Sbjct: 373 ------------GAKNLVV----------SGPPQS---LYGLNLTLRKAKAPSGLDQSRI 407
Query: 357 --------------PIVV--HCS--AGVGRTGTFIALDTVLQRLYNSEGAGSVDILRI-V 397
P+ H A D + + L + + + ++I V
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVP--------ASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 398 H----G--LRRQRVLMVQSLAQ 413
+ G LR + + +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVD 481
Score = 33.1 bits (75), Expect = 0.24
Identities = 48/287 (16%), Positives = 81/287 (28%), Gaps = 106/287 (36%)
Query: 162 DPDWIAVEFEDLKSVGRGQPTTAAELRCNRPKNRYTNIFPYDSSRYKLQPVDDEEGSDYV 221
+P + + F K G+ +R N + I K+ +E + Y
Sbjct: 1668 NPVNLTIHFGGEK----GK-----RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 222 NANYIG--GYLSPRQYIATQGPLCSTVDDFWRMCWESRTPAI----VMLTQCIEKHRDKC 275
+ G LS Q+ TQ PA+ + ++
Sbjct: 1719 ---FRSEKGLLSATQF--TQ-------------------PALTLMEKAAFEDLKSKGLI- 1753
Query: 276 YKYWPSDQ----HP-------MRCADIEISLQDVCHYGSWVLSELRMCRG---------- 314
P+D H AD+ +S++ + V+ RG
Sbjct: 1754 ----PADATFAGHSLGEYAALASLADV-MSIESLVE----VVFY----RGMTMQVAVPRD 1800
Query: 315 ----GEHRMISHYHFTTWPDSGVPSSPNTLVSFV---LSFRTH--ISPA-------QHPI 358
+ MI+ P S + +V + RT + Q
Sbjct: 1801 ELGRSNYGMIA-----INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ--Y 1853
Query: 359 VVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRV 405
V + G ALDTV L N +DI+ + L + V
Sbjct: 1854 V--AA------GDLRALDTVTNVL-NFIKLQKIDIIELQKSLSLEEV 1891
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 48.2 bits (114), Expect = 2e-06
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 21/112 (18%)
Query: 322 HYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQR 381
Y D P+ P + F+ +RT P + H AGVGRT F+ + +L+
Sbjct: 183 RYFRIAATDHVWPT-PENIDRFLAFYRTL--PQDAWLHFHSEAGVGRTTAFMVMTDMLKN 239
Query: 382 --------LYNSEGAGSVDILRIVHG----------LRRQRVLMVQSLAQYA 415
LY G R++++M++ +Y
Sbjct: 240 PSVSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIEQFYRYV 291
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 45.4 bits (107), Expect = 2e-05
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 316 EHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIAL 375
H+ + D P+ + V F A+ I VH AG+GRTGT IA
Sbjct: 236 TDAGFDHHDLF-FADGSTPTD-----AIVKEFLDICENAEGAIAVHSKAGLGRTGTLIAC 289
Query: 376 DTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYECVQVYLQG-GVRHEER 434
+ + + +R R V Q + + ++L+G R + +
Sbjct: 290 YIMKHYRMTAAET--------IAWVRICRPGSVIGPQQQFLVMKQTNLWLEGDYFRQKLK 341
Query: 435 QIQNNE 440
+N +
Sbjct: 342 GQENGQ 347
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 43.6 bits (102), Expect = 5e-05
Identities = 19/73 (26%), Positives = 27/73 (36%)
Query: 316 EHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIAL 375
E I + P++ NT L R + I VHC+ G RTG I
Sbjct: 102 EKEGIKYIKLQCKGHGECPTTENTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICA 161
Query: 376 DTVLQRLYNSEGA 388
V + ++ E A
Sbjct: 162 FLVEKMDWSIEAA 174
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 42.7 bits (100), Expect = 6e-05
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 316 EHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQH-------PIVVHCSAGVGR 368
+ R I + + + D P+ L S++ T ++ Q I VHC AG+GR
Sbjct: 65 KSRGIDVHSWP-FDDGAPPT-RAVLDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGR 122
Query: 369 TGTFIAL 375
+AL
Sbjct: 123 APILVAL 129
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 41.1 bits (96), Expect = 2e-04
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 320 ISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVL 379
+ + P +P + VHC+ G+ RTG + +
Sbjct: 79 LLYKKIQ-VPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 137
Query: 380 QRLYNSEGA 388
+ A
Sbjct: 138 TLGIAPQEA 146
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 42.7 bits (99), Expect = 2e-04
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 278 YWPSDQHPMRCADIE---ISLQDVCHYGSWVLSELRMCRG-GEHRMISHYHFTTWPDSGV 333
+PS + H + + L RG E + +H + D V
Sbjct: 38 SFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNV 97
Query: 334 PSSPNTLVSFVLSFRTHISP-AQHPIVVHCSAGVGRTGTFIA 374
P+ L+ F+ + ++ H I +H G GRTGT ++
Sbjct: 98 PT-LVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVS 138
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 40.4 bits (94), Expect = 3e-04
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 322 HYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQ-HPIVVHCSAGVGRTGTFIALDTVLQ 380
H + D PS + ++ + I VHC AG+GR +AL
Sbjct: 63 HVLDWPFDDGAPPS-NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVAL----- 116
Query: 381 RLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYE 419
G D ++ + R++R S Q ++ +
Sbjct: 117 -ALIEGGMKYEDAVQFI---RQKRRGAFNS-KQLLYLEK 150
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 41.4 bits (96), Expect = 3e-04
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 6/147 (4%)
Query: 297 DVCHYGSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHIS-PAQ 355
D H + + L R + + + P + F +S
Sbjct: 52 DSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDN 111
Query: 356 HPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYA 415
H +HC AG GRTG I + + + L +R + V +Q
Sbjct: 112 HVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEA----LDFYGEVRTRDKKGVTIPSQRR 167
Query: 416 FIYECVQVYLQGGVRHEERQIQNNEAI 442
++Y L+ + + + ++ +
Sbjct: 168 YVYY-YSYLLKNHLDYRPVALLFHKMM 193
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 39.3 bits (91), Expect = 0.001
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 316 EHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIAL 375
E I + + D PS+ L I VHC AG+GR +AL
Sbjct: 79 EKEGIHVLDWP-FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVAL 137
Query: 376 DTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYAFIYE 419
G D ++ + R++R S Q ++ +
Sbjct: 138 ------ALIEGGMKYEDAVQFI---RQKRRGAFNS-KQLLYLEK 171
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 36.6 bits (84), Expect = 0.005
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 322 HYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFIALDTVLQR 381
+ + V + + + + HP+++HC G RTG + LQ+
Sbjct: 62 QFGIEGNKEPFVNIPDHKIRMA---LKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQK 118
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 37.6 bits (86), Expect = 0.007
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 9/140 (6%)
Query: 297 DVCHYGSWVLSELRMCRGGEHRMISHYHFTTWPDSGVPSSPNTLVSFVLSFRTHISP-AQ 355
D H + + L + S +WP PS + L + + + +
Sbjct: 57 DSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPS-LHNLFAVCRNMYNWLLQNPK 115
Query: 356 HPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQRVLMVQSLAQYA 415
+ VVHC G + + + LY++ G +R++ +R + S +
Sbjct: 116 NVCVVHCLDGRAASSILVGAMFIFCNLYSTPG----PAVRLL---YAKRPGIGLSPSHRR 168
Query: 416 FIYECVQVYLQGGVRHEERQ 435
++ + R +
Sbjct: 169 YLGYMCDLLADKPYRPHFKP 188
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 35.9 bits (82), Expect = 0.030
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 26 TNTSEVDFTIGRETCPNEAHYCNGPLKQGTTYRVKVRAFTSPELFTDTIYSPPVSTG 82
+ + FTIG N Y N PL +YR+ +A + T + G
Sbjct: 649 SLQAAQPFTIGDNKTYN--GYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKG 703
Score = 28.6 bits (63), Expect = 5.6
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 26 TNTSEVDFTIGRETCPNEAHYCNGPLKQGTTYRVKVRAFTS 66
+V + +T + + L T VK+
Sbjct: 404 GGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNP 444
Score = 28.2 bits (62), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 41 PNEAHYCNGPLKQGTTYRVKVRAFTS 66
NE H+ L GTTY +RA T+
Sbjct: 523 GNETHFLFFGLYPGTTYSFTIRASTA 548
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.036
Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 55/254 (21%)
Query: 243 CSTVDDFWRMCWESR-TPAIVMLTQCIEKHRDKCYKYWPSDQHPMRCAD--IEISLQDVC 299
C V D + I+M + +W +E L+
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRI-- 89
Query: 300 HYGSWVLSELRM-CRG--GEHRMISHYHFTTWPDSGVPSSPN-TLVSFVLSFRTHI---S 352
+Y +++S ++ R RM + D+ V + N + + L R +
Sbjct: 90 NYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 353 PAQHPIVVHCSAGVGRTGTFIALDTV----LQRLYNSE----GAGSV----DILRIVHGL 400
PA++ +++ G G+ T++ALD +Q + + + +L ++ L
Sbjct: 149 PAKN-VLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 401 RRQRVLMVQSLAQYAFIYECVQVYLQGGVRH--EERQ----------IQNNEAIE----- 443
Q S + ++ + +Q +R + + +QN +A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 444 -------RDEGVDD 450
R + V D
Sbjct: 266 CKILLTTRFKQVTD 279
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 32.7 bits (75), Expect = 0.11
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 356 HPIVVHCSAGVGRTGTFIA 374
+ VHC AG R+ T +A
Sbjct: 90 QCVYVHCKAGRSRSATMVA 108
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 31.3 bits (71), Expect = 0.19
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L T+Y +++A PPVST
Sbjct: 66 LFPSTSYNARLQAMWGQS------LLPPVST 90
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 31.9 bits (72), Expect = 0.20
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 352 SPAQHPIVVHCSAGVGRTGTFIALDTVLQRLYNSEGAGSVDILRIVHGLRRQ-RVLMVQS 410
++VHC A R F L + Q N A ++ + + + L+ +
Sbjct: 94 QHKGKDVLVHCLAN-YRASAFAYLYQLKQGQ-NPNMAQTMTPWNDELAIYPKWQALLTEV 151
Query: 411 LAQY 414
A+Y
Sbjct: 152 SAKY 155
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 31.1 bits (71), Expect = 0.24
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 51 LKQGTTYRVKVRAFT-------SPELFTDTIYSPPVSTG 82
LK+ T Y +V A+ +P++ T+ S+G
Sbjct: 78 LKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGPSSG 116
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 30.3 bits (69), Expect = 0.30
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 51 LKQGTTYRVKVRAFTS 66
LK TTY +KVRA+TS
Sbjct: 71 LKPDTTYDIKVRAWTS 86
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 32.5 bits (73), Expect = 0.32
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 41 PNEAHYCNGPLKQGTTYRVKVRAFTSPELFTDTIYS----------PPVSTGKDVSWLLV 90
Y + VR+ + D I+S +S + + L
Sbjct: 288 VENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRFWLP 347
Query: 91 MGFLVLIVLPVLFIIIRRKIV 111
GF++++V+ V +++R+
Sbjct: 348 FGFILILVIFVTGLLLRKPNT 368
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 30.5 bits (69), Expect = 0.35
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L+ TTY V+VR T
Sbjct: 69 LQPDTTYIVRVRTLTP 84
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 30.5 bits (69), Expect = 0.35
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L+ G Y V+VRA T
Sbjct: 70 LRPGMVYVVQVRARTV 85
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 30.0 bits (68), Expect = 0.35
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L+ TTY +++ A YSPPVST
Sbjct: 62 LEPNTTYEIRIVARNG------QQYSPPVST 86
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 30.4 bits (69), Expect = 0.41
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 51 LKQGTTYRVKVRAFT-------SPELFTDTIYSPPVSTG 82
L T Y +++A S + T+ S+G
Sbjct: 76 LNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPSSG 114
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 30.1 bits (68), Expect = 0.41
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 51 LKQGTTYRVKVRAFTS 66
L T Y V+V A TS
Sbjct: 70 LLVNTLYTVRVAAVTS 85
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 30.1 bits (68), Expect = 0.45
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 51 LKQGTTYRVKVRAFTS 66
LK+G +Y V+VRA +
Sbjct: 71 LKRGASYLVQVRARSE 86
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 30.2 bits (68), Expect = 0.48
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 45 HYCNGPLKQGTTYRVKVRAFTS 66
L Y ++V+A T
Sbjct: 73 TSAELVLPIKEDYIIEVKATTD 94
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 30.0 bits (68), Expect = 0.50
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 51 LKQGTTYRVKVRAFTS 66
LK GT Y +VRA TS
Sbjct: 73 LKPGTRYVFQVRARTS 88
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 30.1 bits (68), Expect = 0.53
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 41 PNEAHYCNGPLKQGTTYRVKVRAFT--------SPELFTDTIYSPP 78
+ +Y L + Y + ++AF T S P
Sbjct: 78 YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGP 123
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 30.0 bits (68), Expect = 0.55
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 13/41 (31%)
Query: 51 LKQGTTYRVKVRAFTS----PELFTDTIYSPPVS--TGKDV 85
LK+ Y V V+AF P S ++ T +
Sbjct: 85 LKKFAQYGVVVQAFNRAGTGP-------SSSEINATTLESG 118
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 120
Score = 29.9 bits (67), Expect = 0.64
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 7 VQSFSIWPPYQVLEPCQFFTNTSEVDFTIGRETCPNEAHYCNGPLKQGTTYRVKVRAFTS 66
+Q + + Y+ Q ++ +D + P E LK+G TY +KVR + +
Sbjct: 45 IQGYRVM--YRQTSGLQATSSWQNLDAKV-----PTERSAVLVNLKKGVTYEIKVRPYFN 97
>3rlf_G Maltose transport system permease protein MALG; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G*
3puz_G* 3pv0_G* 3puw_G*
Length = 296
Score = 31.2 bits (71), Expect = 0.68
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 65 TSPELFTDTIYSPPVSTGKDVSWLLVMGFLVLIVLPV--LFIIIRRKIV-GVTSPRAGGI 121
+T + ++ W V+ LP+ +F++ +R +V G+T AGG+
Sbjct: 238 RDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVNGLT---AGGV 294
Query: 122 RG 123
+G
Sbjct: 295 KG 296
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 29.7 bits (67), Expect = 0.70
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 51 LKQGTTYRVKVRAFTS--------PELFTDTIYSPPVS 80
L TTY ++V A TS + + S P S
Sbjct: 81 LTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGPSS 118
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 30.9 bits (69), Expect = 0.85
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 322 HYHFTTWPDSGVPSSPNTLVSFVLSFRTHISPAQHPIVVHCSAGVGRTGTFI 373
+ D L + V + + VH +AG+GR
Sbjct: 73 QHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVA 124
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 29.6 bits (67), Expect = 0.86
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 51 LKQGTTYRVKVRAFTS----PELFTDTIYSPPVS--TGKDV 85
L++ T YRV VRA T P S PV T +DV
Sbjct: 86 LEKWTEYRVWVRAHTDVGPGP-------ESSPVLVRTDEDV 119
>2dlh_A Receptor-type tyrosine-protein phosphatase delta;
protein-tyrosine phosphatase delta, R-PTP-delta,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 29.7 bits (67), Expect = 0.87
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L TY VKV AFTS
Sbjct: 83 LVPQKTYSVKVLAFTS 98
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 29.3 bits (66), Expect = 0.89
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L+ T+Y +K++ F
Sbjct: 72 LQPETSYDIKMQCFNE 87
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 29.4 bits (66), Expect = 0.97
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 51 LKQGTTYRVKVRAFTS 66
T V++ A T
Sbjct: 86 QVHNATCTVRIAAVTR 101
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 29.2 bits (66), Expect = 1.1
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 51 LKQGTTYRVKVRAFT-------SPELFTDTIYSPPVSTG 82
L T Y ++V A S + T + S+G
Sbjct: 81 LLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASGPSSG 119
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 29.3 bits (66), Expect = 1.2
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 2 PSWSDVQSFSI---W-PP---------YQVLEPCQFFTNTSEVDFTIGRETCPNEAHYCN 48
+ +V++ S+ W PP YQ+ NT+ + P+ Y
Sbjct: 34 ILFPEVRTTSVRLIWQPPAAPNGIILAYQI----THRLNTTTANTATVEVLAPSARQYTA 89
Query: 49 GPLKQGTTYRVKVRAFTS 66
LK + Y ++ A T
Sbjct: 90 TGLKPESVYLFRITAQTR 107
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 28.8 bits (65), Expect = 1.2
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 51 LKQGTTYRVKVRAFT-------SPELFTDTIYSPPVSTG 82
LK+ T Y ++ A+ + ++ T+ S+G
Sbjct: 68 LKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPSSG 106
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 29.2 bits (66), Expect = 1.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L++G+ Y +V A T
Sbjct: 92 LEKGSQYSFQVSAMTV 107
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 132
Score = 29.2 bits (66), Expect = 1.3
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 51 LKQGTTYRVKVRAFTS 66
L +GT Y +V A T
Sbjct: 84 LDRGTEYNFRVAALTI 99
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 28.6 bits (64), Expect = 1.7
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 41 PNEAHYCNGPLKQGTTYRVKVRAFT--------SPELFTDTIYSPPVSTG 82
+ +Y L+ + Y + ++AF T +I S P S+G
Sbjct: 68 SKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP-SSG 116
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 29.4 bits (66), Expect = 1.8
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 26 TNTSEVDFTIGRETCPNEAHYCNGPLKQGTTYRVKVRAFTS 66
+E+ + N + L T Y K++A S
Sbjct: 148 DVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNS 188
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 29.4 bits (65), Expect = 2.0
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPP--VSTGKDVSW 87
L+ T Y V V +F P S T KD S
Sbjct: 180 LEPNTLYCVHVESFV-PGPPRRAQPSEKQCARTLKDQSS 217
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 28.5 bits (64), Expect = 2.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 51 LKQGTTYRVKVRAFTS 66
L+ + Y + VR
Sbjct: 87 LEPFSHYTLNVRVVNG 102
>3di4_A Uncharacterized protein DUF1989; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.60A {Silicibacter pomeroyi}
Length = 286
Score = 29.6 bits (65), Expect = 2.3
Identities = 10/58 (17%), Positives = 17/58 (29%)
Query: 23 QFFTNTSEVDFTIGRETCPNEAHYCNGPLKQGTTYRVKVRAFTSPELFTDTIYSPPVS 80
+ +E+D CP + + + V F E SP V+
Sbjct: 221 DYLEFFAEIDLLGNLSACPGGDCSSEHSSDTASCHPLLVEIFAPAEGMLGDWPSPSVN 278
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated
oncogenes (CDON)binding...; fibronectin type III, FN3;
NMR {Mus musculus} SCOP: b.1.2.1
Length = 114
Score = 27.8 bits (62), Expect = 2.6
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L+ T+Y +K++ F
Sbjct: 76 LQPETSYDIKMQCFNE 91
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 29.1 bits (64), Expect = 2.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 347 FRTHISPAQHPIVVHCSAGVGRTGTFIAL 375
+ A P++ HC AG RTG +AL
Sbjct: 165 RVVTLLAAGRPVLTHCFAGKDRTGFVVAL 193
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin
type III domain containing protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 28.1 bits (63), Expect = 2.9
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 51 LKQGTTYRVKVRAFTS 66
LK + Y ++ A +
Sbjct: 77 LKPNSLYYFRLAARSP 92
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 29.0 bits (65), Expect = 3.0
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 41 PNEAHYCNGPLKQGTTYRVKVRAFTS 66
P L++ YR V+A
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNG 182
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 27.4 bits (61), Expect = 3.5
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
LK T Y V + + S P
Sbjct: 63 LKPDTEYEVSLISRRGDM------SSNPAKE 87
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L+ T YRV V A + S VS
Sbjct: 68 LQAATKYRVLVSAIYAAG------RSEAVSA 92
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 27.4 bits (61), Expect = 3.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 38 ETCPNEAHYCNGPLKQGTTYRVKVRAFTS 66
+ ++ H+ L +GTTY ++ A
Sbjct: 56 DFGKDDQHFTVTGLHKGTTYIFRLAAKNR 84
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 27.4 bits (61), Expect = 4.2
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L T Y VR P + P S
Sbjct: 66 LVLHTNYTATVRGLRGPN------LTSPASI 90
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 27.5 bits (61), Expect = 4.9
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 7/39 (17%)
Query: 51 LKQGTTYRVKVRAFT-------SPELFTDTIYSPPVSTG 82
LK T Y V S T + S+G
Sbjct: 85 LKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSSG 123
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 28.6 bits (63), Expect = 5.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 51 LKQGTTYRVKVRAFTS 66
L TTY V+V+A T
Sbjct: 502 LAPDTTYLVQVQALTQ 517
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 27.9 bits (62), Expect = 5.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 51 LKQGTTYRVKVRAFTS 66
L+ T Y K+++F++
Sbjct: 181 LETATMYEFKLQSFSA 196
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 28.2 bits (63), Expect = 5.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 51 LKQGTTYRVKVRAFTS 66
L T Y V++ A+T
Sbjct: 260 LTSDTLYMVRMAAYTD 275
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 27.9 bits (61), Expect = 6.5
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 42 NEAHYCNGPLKQGTTYRVKVRAFTSPELFTDTIY----SPPVSTGKD 84
N + + + T V++R T+ + D S +S GK
Sbjct: 265 NTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKK 311
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 28.0 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDT-IYSPPV--STGKDVS 86
LK T Y VK RA T E + ++S V T +
Sbjct: 374 LKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNT 412
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 27.4 bits (61), Expect = 7.6
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 51 LKQGTTYRVKVRAFTS 66
Y +KV A
Sbjct: 171 QPTFVKYLIKVVAIND 186
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus
design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 26.2 bits (58), Expect = 7.6
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L G Y V V A + SPP+
Sbjct: 62 LTPGVEYVVSVYALKDNQ------ESPPLVG 86
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 26.2 bits (58), Expect = 7.9
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L+ G+ Y V V A D + S P+
Sbjct: 62 LRPGSEYTVSVVA------LHDDMESQPLIG 86
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 27.5 bits (61), Expect = 8.3
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L+ GT Y + V A + + S P+
Sbjct: 262 LEPGTEYTIYVIALKNNQ------KSEPLIG 286
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 120
Score = 26.6 bits (59), Expect = 8.9
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 51 LKQGTTYRVKVRAFTS 66
L T Y +V A
Sbjct: 82 LMPATVYIFRVMAQNK 97
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 27.0 bits (60), Expect = 8.9
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
L G Y V + + E S P+S
Sbjct: 154 LVPGVDYNVNIISVKGFE------ESEPISG 178
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 26.3 bits (58), Expect = 9.2
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 51 LKQGTTYRVKVRAFTSPELFTDTIYSPPVST 81
LK GT Y V + S P+S
Sbjct: 62 LKPGTEYTVSIYGVKGGH------RSNPLSA 86
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 27.7 bits (61), Expect = 9.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 51 LKQGTTYRVKVRAFTS 66
L T Y V++ A+T
Sbjct: 559 LTSDTLYMVRMAAYTD 574
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 26.3 bits (58), Expect = 9.8
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 51 LKQGTTYRVKVRAFT-------SPELFTDTIYSPPVSTG 82
L +TY +V+AF S L T S+G
Sbjct: 72 LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSSG 110
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 26.9 bits (60), Expect = 9.8
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 51 LKQGTTYRVKVRAFTS 66
L QG Y +V A
Sbjct: 165 LIQGEEYSFRVSAQNE 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.447
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,225,750
Number of extensions: 437249
Number of successful extensions: 1134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 159
Length of query: 451
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 354
Effective length of database: 3,993,456
Effective search space: 1413683424
Effective search space used: 1413683424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.1 bits)