Query psy15335
Match_columns 552
No_of_seqs 394 out of 2030
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:18:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01008 queuine tRNA-ribosylt 100.0 2.5E-48 5.4E-53 404.8 7.3 200 196-402 148-364 (372)
2 COG0343 Tgt Queuine/archaeosin 100.0 1.1E-47 2.3E-52 397.9 6.1 201 197-403 129-344 (372)
3 TIGR00430 Q_tRNA_tgt tRNA-guan 100.0 6.4E-46 1.4E-50 386.3 8.4 202 196-402 128-344 (368)
4 PRK00112 tgt queuine tRNA-ribo 100.0 1E-45 2.2E-50 384.4 8.3 201 197-402 133-348 (366)
5 TIGR00449 tgt_general tRNA-gua 100.0 1E-45 2.2E-50 384.6 7.7 201 196-402 128-343 (367)
6 PF01702 TGT: Queuine tRNA-rib 100.0 1E-44 2.2E-49 354.2 10.9 171 5-402 51-221 (238)
7 KOG3908|consensus 100.0 7.5E-40 1.6E-44 329.6 0.9 171 235-412 185-365 (396)
8 TIGR00432 arcsn_tRNA_tgt tRNA- 100.0 3.2E-39 7E-44 349.7 4.7 190 197-402 7-214 (540)
9 PRK13533 7-cyano-7-deazaguanin 100.0 1.8E-38 4E-43 340.5 5.5 189 196-402 110-316 (487)
10 PRK13534 7-cyano-7-deazaguanin 100.0 2E-37 4.4E-42 341.4 5.7 187 196-402 109-313 (639)
11 PF01702 TGT: Queuine tRNA-rib 100.0 2.6E-36 5.6E-41 295.2 -2.0 188 197-552 7-206 (238)
12 COG0343 Tgt Queuine/archaeosin 100.0 4.4E-31 9.6E-36 274.4 11.3 108 6-119 174-281 (372)
13 PRK01008 queuine tRNA-ribosylt 100.0 8.8E-31 1.9E-35 273.5 11.5 107 7-120 196-302 (372)
14 KOG3909|consensus 100.0 1.1E-29 2.3E-34 260.1 7.1 189 7-407 182-370 (414)
15 PRK00112 tgt queuine tRNA-ribo 100.0 3.8E-29 8.1E-34 260.7 10.3 107 8-120 181-287 (366)
16 TIGR00430 Q_tRNA_tgt tRNA-guan 100.0 4.2E-29 9.1E-34 260.6 10.3 109 7-121 176-284 (368)
17 TIGR00449 tgt_general tRNA-gua 100.0 6.9E-29 1.5E-33 258.8 10.7 108 7-120 175-282 (367)
18 PRK13533 7-cyano-7-deazaguanin 100.0 2.3E-28 4.9E-33 262.9 12.0 111 8-121 157-267 (487)
19 TIGR00432 arcsn_tRNA_tgt tRNA- 99.9 3.4E-28 7.3E-33 264.2 11.1 112 8-122 53-164 (540)
20 KOG3908|consensus 99.9 4E-28 8.6E-33 245.1 4.7 113 5-123 184-296 (396)
21 PRK13534 7-cyano-7-deazaguanin 99.9 4.7E-27 1E-31 259.6 10.9 112 8-122 154-265 (639)
22 KOG3909|consensus 99.9 7E-23 1.5E-27 210.4 3.5 50 502-551 300-349 (414)
23 COG1549 Queuine tRNA-ribosyltr 95.5 0.0085 1.8E-07 66.2 3.0 49 67-117 91-139 (519)
24 PHA01745 hypothetical protein 93.4 0.075 1.6E-06 55.2 3.7 99 10-118 102-200 (306)
25 PRK12330 oxaloacetate decarbox 91.7 0.5 1.1E-05 52.8 7.7 81 19-105 152-236 (499)
26 cd07944 DRE_TIM_HOA_like 4-hyd 89.2 1.3 2.8E-05 45.3 7.6 80 18-103 134-217 (266)
27 PRK04147 N-acetylneuraminate l 88.8 1.2 2.5E-05 45.7 7.0 85 16-104 18-109 (293)
28 PLN02417 dihydrodipicolinate s 88.7 1.3 2.8E-05 45.3 7.2 85 16-104 16-106 (280)
29 COG5016 Pyruvate/oxaloacetate 88.3 1 2.2E-05 49.5 6.4 75 21-103 155-233 (472)
30 PRK14042 pyruvate carboxylase 87.8 1.4 3E-05 50.4 7.4 81 19-107 151-235 (596)
31 cd03174 DRE_TIM_metallolyase D 87.2 2 4.4E-05 42.2 7.3 81 19-106 143-227 (265)
32 cd00954 NAL N-Acetylneuraminic 86.7 1.9 4.2E-05 44.0 7.1 85 16-104 15-106 (288)
33 PRK12331 oxaloacetate decarbox 86.4 2.5 5.4E-05 46.7 8.1 76 20-103 152-231 (448)
34 cd07938 DRE_TIM_HMGL 3-hydroxy 86.4 2.8 6.1E-05 43.0 8.0 80 16-102 143-226 (274)
35 PRK14041 oxaloacetate decarbox 85.9 2.2 4.9E-05 47.3 7.5 76 20-103 151-230 (467)
36 PF00701 DHDPS: Dihydrodipicol 85.9 1 2.2E-05 45.8 4.5 80 16-99 16-101 (289)
37 PRK05692 hydroxymethylglutaryl 85.8 2.5 5.5E-05 43.8 7.5 82 14-102 147-232 (287)
38 cd07943 DRE_TIM_HOA 4-hydroxy- 85.8 2.8 6.1E-05 42.3 7.6 84 17-107 136-223 (263)
39 cd00950 DHDPS Dihydrodipicolin 85.7 2.6 5.6E-05 42.7 7.3 85 16-104 15-105 (284)
40 PF00682 HMGL-like: HMGL-like 85.4 1.9 4.1E-05 42.3 6.1 88 11-106 125-218 (237)
41 cd00952 CHBPH_aldolase Trans-o 85.4 2 4.4E-05 44.6 6.5 85 16-104 23-113 (309)
42 cd00945 Aldolase_Class_I Class 84.9 2.3 5E-05 39.3 6.1 80 11-107 2-91 (201)
43 cd07940 DRE_TIM_IPMS 2-isoprop 84.8 3.1 6.6E-05 42.2 7.3 89 10-104 130-224 (268)
44 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.5 3.9 8.4E-05 41.9 7.5 81 17-105 144-228 (275)
45 cd00408 DHDPS-like Dihydrodipi 83.3 3.1 6.7E-05 41.9 6.7 85 16-104 12-102 (281)
46 cd07939 DRE_TIM_NifV Streptomy 83.3 4 8.6E-05 41.1 7.4 84 11-103 127-216 (259)
47 PRK08195 4-hyroxy-2-oxovalerat 83.2 5.9 0.00013 42.0 8.9 85 17-107 139-227 (337)
48 TIGR02313 HpaI-NOT-DapA 2,4-di 82.9 3.2 7E-05 42.8 6.7 85 16-104 15-105 (294)
49 PRK03170 dihydrodipicolinate s 82.7 4 8.7E-05 41.6 7.3 85 16-104 16-106 (292)
50 PRK12581 oxaloacetate decarbox 82.7 3.9 8.5E-05 45.6 7.6 76 20-103 161-240 (468)
51 PRK09282 pyruvate carboxylase 81.9 3.7 8E-05 46.9 7.3 77 19-103 151-231 (592)
52 cd07945 DRE_TIM_CMS Leptospira 81.6 4.8 0.0001 41.6 7.4 77 19-102 144-224 (280)
53 PLN02746 hydroxymethylglutaryl 81.3 4.7 0.0001 43.3 7.4 80 16-102 191-274 (347)
54 TIGR03249 KdgD 5-dehydro-4-deo 81.3 3.8 8.2E-05 42.2 6.5 82 16-103 20-108 (296)
55 TIGR00674 dapA dihydrodipicoli 81.2 4.4 9.6E-05 41.3 6.9 85 16-104 13-103 (285)
56 TIGR01108 oadA oxaloacetate de 80.3 4.4 9.4E-05 46.2 7.1 81 20-108 147-231 (582)
57 TIGR03217 4OH_2_O_val_ald 4-hy 77.5 7.8 0.00017 41.1 7.6 79 19-103 140-222 (333)
58 TIGR01235 pyruv_carbox pyruvat 77.3 6.8 0.00015 48.1 7.9 78 20-105 687-768 (1143)
59 cd02071 MM_CoA_mut_B12_BD meth 76.5 12 0.00026 33.6 7.5 65 27-98 42-106 (122)
60 PRK03620 5-dehydro-4-deoxygluc 76.4 7.2 0.00016 40.4 6.8 64 16-83 22-85 (303)
61 TIGR00683 nanA N-acetylneurami 75.8 8.1 0.00017 39.8 7.0 85 16-104 15-106 (290)
62 PRK12999 pyruvate carboxylase; 75.7 6.2 0.00014 48.4 7.1 82 19-108 688-773 (1146)
63 PHA01745 hypothetical protein 74.6 2.5 5.4E-05 44.4 2.9 72 270-345 126-207 (306)
64 PRK14040 oxaloacetate decarbox 74.0 9.4 0.0002 43.7 7.5 81 19-107 152-236 (593)
65 COG0329 DapA Dihydrodipicolina 73.9 8.4 0.00018 40.2 6.6 85 16-104 19-109 (299)
66 cd00951 KDGDH 5-dehydro-4-deox 73.1 9.6 0.00021 39.2 6.7 79 16-98 15-98 (289)
67 cd07941 DRE_TIM_LeuA3 Desulfob 72.7 13 0.00028 38.0 7.5 81 19-106 148-232 (273)
68 PRK11613 folP dihydropteroate 72.7 35 0.00076 35.8 10.7 89 6-98 12-114 (282)
69 cd07948 DRE_TIM_HCS Saccharomy 72.5 13 0.00029 38.0 7.5 85 19-112 138-227 (262)
70 cd00953 KDG_aldolase KDG (2-ke 70.8 11 0.00023 38.7 6.4 81 17-104 15-101 (279)
71 PF05690 ThiG: Thiazole biosyn 70.3 15 0.00032 38.1 7.2 72 29-107 138-217 (247)
72 COG1549 Queuine tRNA-ribosyltr 68.0 2 4.3E-05 48.2 0.5 66 270-337 66-139 (519)
73 PRK05848 nicotinate-nucleotide 66.6 17 0.00037 37.9 6.9 68 29-107 196-263 (273)
74 PLN02274 inosine-5'-monophosph 64.2 32 0.0007 38.7 9.0 81 7-98 234-314 (505)
75 PF01729 QRPTase_C: Quinolinat 63.4 12 0.00025 36.3 4.7 70 28-108 93-162 (169)
76 cd04730 NPD_like 2-Nitropropan 63.3 22 0.00048 34.6 6.7 76 29-108 116-192 (236)
77 PRK06843 inosine 5-monophospha 62.7 35 0.00076 37.6 8.7 82 7-99 139-220 (404)
78 PRK07259 dihydroorotate dehydr 61.7 48 0.001 34.0 9.1 88 9-100 92-188 (301)
79 PRK07896 nicotinate-nucleotide 61.1 26 0.00055 37.0 7.0 66 31-107 215-280 (289)
80 TIGR02090 LEU1_arch isopropylm 61.0 38 0.00082 36.3 8.5 85 11-104 129-219 (363)
81 cd00331 IGPS Indole-3-glycerol 60.6 20 0.00044 34.8 5.9 65 28-99 134-199 (217)
82 PTZ00314 inosine-5'-monophosph 60.0 44 0.00095 37.5 9.0 83 7-100 227-309 (495)
83 PRK05458 guanosine 5'-monophos 59.6 25 0.00054 37.6 6.7 65 26-100 100-167 (326)
84 PRK05742 nicotinate-nucleotide 59.4 30 0.00064 36.2 7.1 65 30-108 204-268 (277)
85 cd04735 OYE_like_4_FMN Old yel 59.0 38 0.00081 36.0 8.0 83 15-99 228-311 (353)
86 cd04740 DHOD_1B_like Dihydroor 58.5 59 0.0013 33.2 9.1 89 9-100 90-185 (296)
87 cd01572 QPRTase Quinolinate ph 57.1 19 0.00041 37.2 5.2 64 30-107 197-260 (268)
88 PRK11197 lldD L-lactate dehydr 56.6 17 0.00036 39.7 5.0 89 12-107 246-335 (381)
89 cd08205 RuBisCO_IV_RLP Ribulos 55.9 34 0.00073 37.0 7.1 86 8-96 130-225 (367)
90 PRK06106 nicotinate-nucleotide 55.7 34 0.00075 35.9 6.9 64 31-108 210-273 (281)
91 cd02810 DHOD_DHPD_FMN Dihydroo 54.5 99 0.0021 31.3 9.8 90 10-101 99-196 (289)
92 cd01568 QPRTase_NadC Quinolina 54.1 42 0.00091 34.6 7.2 63 33-107 199-261 (269)
93 PLN02591 tryptophan synthase 53.8 58 0.0013 33.5 8.1 79 20-104 142-221 (250)
94 TIGR00640 acid_CoA_mut_C methy 53.5 69 0.0015 29.7 7.8 65 26-98 44-109 (132)
95 cd03332 LMO_FMN L-Lactate 2-mo 53.3 37 0.0008 37.1 6.9 86 14-107 256-343 (383)
96 TIGR01305 GMP_reduct_1 guanosi 53.2 71 0.0015 34.7 8.9 75 14-98 99-175 (343)
97 PLN02979 glycolate oxidase 52.7 27 0.00059 38.1 5.8 88 12-107 224-313 (366)
98 TIGR01303 IMP_DH_rel_1 IMP deh 52.5 34 0.00073 38.3 6.6 63 27-99 229-292 (475)
99 PLN02535 glycolate oxidase 52.2 18 0.00039 39.2 4.4 88 12-107 224-313 (364)
100 PF01070 FMN_dh: FMN-dependent 52.0 22 0.00048 38.2 5.0 80 23-107 234-315 (356)
101 COG5016 Pyruvate/oxaloacetate 51.8 8 0.00017 42.8 1.6 48 277-326 180-233 (472)
102 TIGR01302 IMP_dehydrog inosine 51.5 37 0.0008 37.4 6.7 65 28-101 229-293 (450)
103 PLN02493 probable peroxisomal 50.9 35 0.00075 37.2 6.2 88 12-107 225-314 (367)
104 cd01573 modD_like ModD; Quinol 50.6 50 0.0011 34.2 7.1 61 31-103 199-259 (272)
105 TIGR02660 nifV_homocitr homoci 50.5 50 0.0011 35.3 7.3 87 11-105 130-221 (365)
106 cd04747 OYE_like_5_FMN Old yel 50.1 44 0.00095 36.1 6.8 77 25-102 147-256 (361)
107 PRK11858 aksA trans-homoaconit 50.1 63 0.0014 34.8 8.0 84 11-103 133-222 (378)
108 PRK08385 nicotinate-nucleotide 49.8 47 0.001 34.8 6.8 69 29-107 196-265 (278)
109 TIGR01182 eda Entner-Doudoroff 49.4 81 0.0018 31.6 8.1 22 76-97 103-124 (204)
110 PRK06015 keto-hydroxyglutarate 49.1 1.1E+02 0.0023 30.8 8.8 24 74-97 97-120 (201)
111 PRK08508 biotin synthase; Prov 48.3 88 0.0019 32.1 8.4 77 19-100 40-118 (279)
112 COG1038 PycA Pyruvate carboxyl 48.0 49 0.0011 39.9 7.1 79 19-105 691-773 (1149)
113 PRK07428 nicotinate-nucleotide 47.3 60 0.0013 34.2 7.1 65 32-107 213-277 (288)
114 cd00381 IMPDH IMPDH: The catal 47.1 91 0.002 33.0 8.5 63 28-99 99-161 (325)
115 cd04734 OYE_like_3_FMN Old yel 47.1 96 0.0021 32.9 8.7 84 15-101 221-315 (343)
116 PRK07114 keto-hydroxyglutarate 46.6 36 0.00078 34.5 5.2 83 4-98 10-95 (222)
117 cd02940 DHPD_FMN Dihydropyrimi 46.5 1.5E+02 0.0032 30.7 9.8 87 8-97 99-196 (299)
118 PLN02334 ribulose-phosphate 3- 46.3 75 0.0016 31.5 7.3 66 36-104 140-205 (229)
119 COG0352 ThiE Thiamine monophos 46.0 52 0.0011 33.2 6.2 68 27-98 116-183 (211)
120 cd04731 HisF The cyclase subun 45.2 84 0.0018 31.1 7.5 76 26-108 153-230 (243)
121 PRK05567 inosine 5'-monophosph 45.2 63 0.0014 36.0 7.3 67 25-100 230-296 (486)
122 PF00478 IMPDH: IMP dehydrogen 45.2 60 0.0013 35.3 6.9 80 7-97 94-173 (352)
123 COG0800 Eda 2-keto-3-deoxy-6-p 44.7 53 0.0012 33.4 6.0 78 5-98 9-89 (211)
124 cd04736 MDH_FMN Mandelate dehy 44.6 89 0.0019 34.0 8.1 77 24-107 246-324 (361)
125 TIGR01306 GMP_reduct_2 guanosi 44.1 1.3E+02 0.0028 32.3 9.1 78 12-100 84-164 (321)
126 cd02809 alpha_hydroxyacid_oxid 43.8 66 0.0014 33.3 6.8 77 26-107 184-262 (299)
127 cd00452 KDPG_aldolase KDPG and 43.7 64 0.0014 31.0 6.3 53 29-99 70-122 (190)
128 COG2022 ThiG Uncharacterized e 43.3 71 0.0015 33.4 6.7 26 73-98 182-208 (262)
129 cd02809 alpha_hydroxyacid_oxid 43.3 1E+02 0.0023 31.9 8.1 80 14-101 121-200 (299)
130 CHL00162 thiG thiamin biosynth 42.8 96 0.0021 32.7 7.6 64 28-98 151-215 (267)
131 PLN02321 2-isopropylmalate syn 42.3 72 0.0016 37.2 7.3 88 10-104 227-322 (632)
132 CHL00200 trpA tryptophan synth 42.2 62 0.0013 33.5 6.2 45 56-102 187-232 (263)
133 PTZ00413 lipoate synthase; Pro 42.0 1.1E+02 0.0024 33.9 8.3 80 19-100 177-258 (398)
134 TIGR01769 GGGP geranylgeranylg 41.6 40 0.00088 33.8 4.7 52 27-88 16-67 (205)
135 PLN03228 methylthioalkylmalate 41.1 95 0.0021 35.2 7.9 77 19-102 236-319 (503)
136 PRK10550 tRNA-dihydrouridine s 40.8 1.5E+02 0.0033 31.3 9.0 91 10-100 63-167 (312)
137 TIGR00078 nadC nicotinate-nucl 40.7 65 0.0014 33.3 6.1 65 29-107 192-256 (265)
138 PRK13753 dihydropteroate synth 40.7 1.3E+02 0.0027 31.8 8.2 82 16-102 17-104 (279)
139 cd04737 LOX_like_FMN L-Lactate 40.5 64 0.0014 34.9 6.2 77 26-107 233-311 (351)
140 PRK08195 4-hyroxy-2-oxovalerat 40.0 1E+02 0.0022 32.9 7.6 75 19-98 22-105 (337)
141 PRK09016 quinolinate phosphori 39.8 69 0.0015 34.1 6.2 65 30-108 223-287 (296)
142 PRK06559 nicotinate-nucleotide 39.6 75 0.0016 33.7 6.5 64 31-108 213-276 (290)
143 PRK07455 keto-hydroxyglutarate 39.5 67 0.0014 31.3 5.7 27 77-104 108-134 (187)
144 PRK12330 oxaloacetate decarbox 39.4 23 0.00051 39.9 2.9 50 277-326 179-234 (499)
145 cd03174 DRE_TIM_metallolyase D 39.3 1E+02 0.0022 30.4 7.1 76 19-98 16-91 (265)
146 PF00290 Trp_syntA: Tryptophan 39.2 1.6E+02 0.0034 30.7 8.6 72 20-98 151-223 (259)
147 PRK05718 keto-hydroxyglutarate 39.1 1.1E+02 0.0024 30.7 7.3 37 5-42 11-47 (212)
148 PRK11572 copper homeostasis pr 39.0 1E+02 0.0022 32.1 7.2 71 22-97 73-144 (248)
149 PRK08072 nicotinate-nucleotide 38.3 74 0.0016 33.3 6.1 63 31-107 204-266 (277)
150 PRK06543 nicotinate-nucleotide 38.3 82 0.0018 33.2 6.5 63 32-108 210-272 (281)
151 PRK06806 fructose-bisphosphate 38.2 1.6E+02 0.0036 30.7 8.6 72 27-104 158-233 (281)
152 cd02931 ER_like_FMN Enoate red 37.9 92 0.002 33.6 7.0 53 25-78 153-223 (382)
153 cd04738 DHOD_2_like Dihydrooro 37.8 2.5E+02 0.0055 29.5 10.1 83 22-105 216-313 (327)
154 PRK00043 thiE thiamine-phospha 37.6 1E+02 0.0022 29.3 6.6 71 28-100 117-187 (212)
155 TIGR00973 leuA_bact 2-isopropy 37.3 1.2E+02 0.0026 34.1 8.0 86 11-103 134-227 (494)
156 PRK01130 N-acetylmannosamine-6 37.2 75 0.0016 31.1 5.7 64 29-98 133-199 (221)
157 cd02932 OYE_YqiM_FMN Old yello 36.8 1.2E+02 0.0026 31.9 7.4 78 23-101 155-261 (336)
158 PRK07094 biotin synthase; Prov 36.0 2E+02 0.0044 29.6 8.9 84 20-110 71-159 (323)
159 cd02801 DUS_like_FMN Dihydrour 35.7 2.5E+02 0.0054 27.2 9.0 86 12-100 57-157 (231)
160 PRK06978 nicotinate-nucleotide 35.3 97 0.0021 32.9 6.5 64 31-108 221-284 (294)
161 PLN02495 oxidoreductase, actin 35.2 2.6E+02 0.0056 30.8 9.9 88 7-96 112-209 (385)
162 cd07947 DRE_TIM_Re_CS Clostrid 34.7 1.4E+02 0.003 31.2 7.4 81 23-103 150-237 (279)
163 cd02803 OYE_like_FMN_family Ol 34.6 1.1E+02 0.0025 31.4 6.8 79 23-102 142-249 (327)
164 TIGR03217 4OH_2_O_val_ald 4-hy 34.5 1.4E+02 0.0031 31.8 7.6 76 19-99 21-105 (333)
165 KOG2368|consensus 34.3 62 0.0013 33.9 4.7 102 12-119 159-269 (316)
166 TIGR00007 phosphoribosylformim 34.2 1.7E+02 0.0036 28.6 7.6 79 15-100 136-217 (230)
167 PRK05567 inosine 5'-monophosph 33.8 85 0.0018 34.9 6.1 71 26-98 281-357 (486)
168 cd00429 RPE Ribulose-5-phospha 33.7 1.7E+02 0.0036 27.7 7.3 67 36-104 128-197 (211)
169 cd04732 HisA HisA. Phosphorib 33.6 1.8E+02 0.0039 28.3 7.7 68 27-101 151-219 (234)
170 TIGR01496 DHPS dihydropteroate 33.5 1.5E+02 0.0034 30.3 7.5 85 16-104 15-105 (257)
171 TIGR00262 trpA tryptophan synt 33.1 3.8E+02 0.0083 27.5 10.2 86 9-97 10-118 (256)
172 PF03932 CutC: CutC family; I 33.0 1.2E+02 0.0027 30.4 6.5 42 22-67 72-113 (201)
173 PRK11840 bifunctional sulfur c 32.9 1.5E+02 0.0032 32.2 7.4 37 55-97 237-274 (326)
174 cd00564 TMP_TenI Thiamine mono 32.4 1.4E+02 0.003 27.5 6.4 73 28-103 108-180 (196)
175 COG0157 NadC Nicotinate-nucleo 32.1 1.2E+02 0.0026 32.2 6.4 67 30-108 203-269 (280)
176 PRK00915 2-isopropylmalate syn 31.8 1.8E+02 0.0038 32.9 8.2 87 10-103 136-230 (513)
177 PRK12344 putative alpha-isopro 31.5 1.5E+02 0.0033 33.6 7.7 78 19-104 155-236 (524)
178 TIGR02708 L_lactate_ox L-lacta 31.4 1.5E+02 0.0032 32.5 7.2 77 25-107 239-318 (367)
179 PRK02261 methylaspartate mutas 31.1 2E+02 0.0043 26.8 7.2 47 56-102 68-121 (137)
180 PRK06552 keto-hydroxyglutarate 30.5 1.3E+02 0.0027 30.3 6.1 82 4-98 8-92 (213)
181 TIGR03572 WbuZ glycosyl amidat 30.4 2.1E+02 0.0046 28.1 7.7 69 25-100 156-226 (232)
182 TIGR01036 pyrD_sub2 dihydrooro 29.8 1.2E+02 0.0025 32.4 6.1 49 57-105 272-321 (335)
183 PRK13125 trpA tryptophan synth 29.4 81 0.0018 31.7 4.6 47 56-103 169-216 (244)
184 COG0042 tRNA-dihydrouridine sy 29.2 2E+02 0.0043 30.6 7.7 68 10-78 67-141 (323)
185 PRK00278 trpC indole-3-glycero 28.5 1.6E+02 0.0035 30.1 6.7 62 31-99 176-238 (260)
186 cd06556 ICL_KPHMT Members of t 28.4 1.9E+02 0.0041 29.7 7.0 71 27-98 24-106 (240)
187 PRK10605 N-ethylmaleimide redu 28.3 1.2E+02 0.0027 32.5 6.0 78 25-103 162-271 (362)
188 cd00945 Aldolase_Class_I Class 28.2 3.8E+02 0.0082 24.6 8.5 79 21-102 64-150 (201)
189 PF02581 TMP-TENI: Thiamine mo 28.2 1.1E+02 0.0023 29.2 5.0 67 28-98 108-174 (180)
190 PF00682 HMGL-like: HMGL-like 28.2 54 0.0012 32.1 3.1 72 19-100 11-86 (237)
191 TIGR00737 nifR3_yhdG putative 28.2 3.1E+02 0.0068 28.5 8.8 89 10-100 63-166 (319)
192 PRK05096 guanosine 5'-monophos 27.4 2.8E+02 0.0061 30.4 8.4 75 15-98 101-176 (346)
193 cd02922 FCB2_FMN Flavocytochro 27.4 1.6E+02 0.0034 31.7 6.6 81 25-108 224-307 (344)
194 PRK09140 2-dehydro-3-deoxy-6-p 26.9 1.4E+02 0.0029 29.8 5.6 25 74-98 104-128 (206)
195 PRK08185 hypothetical protein; 26.7 2.7E+02 0.0059 29.3 8.0 66 25-97 152-224 (283)
196 cd04729 NanE N-acetylmannosami 26.3 1.5E+02 0.0032 29.0 5.7 64 30-99 138-204 (219)
197 PRK04169 geranylgeranylglycery 26.2 1.3E+02 0.0028 30.9 5.4 49 29-88 26-74 (232)
198 PRK07107 inosine 5-monophospha 26.1 2E+02 0.0042 32.7 7.3 63 26-98 245-309 (502)
199 TIGR01859 fruc_bis_ald_ fructo 25.8 3E+02 0.0065 28.8 8.1 75 26-106 157-235 (282)
200 cd02810 DHOD_DHPD_FMN Dihydroo 25.7 4.7E+02 0.01 26.5 9.4 87 17-104 171-275 (289)
201 TIGR00735 hisF imidazoleglycer 25.3 2.2E+02 0.0048 28.7 6.9 72 25-103 158-231 (254)
202 cd00377 ICL_PEPM Members of th 25.2 1.8E+02 0.0039 29.5 6.2 64 27-92 21-91 (243)
203 cd04728 ThiG Thiazole synthase 25.1 2.3E+02 0.005 29.7 7.0 30 73-102 175-205 (248)
204 cd04733 OYE_like_2_FMN Old yel 24.9 2E+02 0.0042 30.3 6.7 76 25-101 152-256 (338)
205 cd04726 KGPDC_HPS 3-Keto-L-gul 24.7 2.4E+02 0.0052 26.7 6.7 58 28-97 70-129 (202)
206 PTZ00314 inosine-5'-monophosph 24.7 1.4E+02 0.003 33.7 5.7 70 26-98 294-370 (495)
207 TIGR01334 modD putative molybd 24.6 2E+02 0.0043 30.3 6.5 65 29-104 202-266 (277)
208 TIGR00262 trpA tryptophan synt 24.3 1.1E+02 0.0024 31.3 4.6 45 56-102 183-228 (256)
209 PF13714 PEP_mutase: Phosphoen 24.2 1.6E+02 0.0035 30.0 5.7 65 26-92 20-92 (238)
210 cd04740 DHOD_1B_like Dihydroor 24.1 2.4E+02 0.0051 28.8 6.9 42 60-103 220-262 (296)
211 TIGR00736 nifR3_rel_arch TIM-b 23.8 1.3E+02 0.0028 30.8 4.9 81 12-105 17-105 (231)
212 TIGR00510 lipA lipoate synthas 23.8 3.9E+02 0.0083 28.4 8.5 78 20-99 92-171 (302)
213 TIGR03700 mena_SCO4494 putativ 23.4 2.9E+02 0.0063 29.3 7.7 76 19-99 79-165 (351)
214 PRK09240 thiH thiamine biosynt 23.2 3.6E+02 0.0078 29.0 8.4 83 19-107 104-190 (371)
215 PRK05286 dihydroorotate dehydr 22.9 1.9E+02 0.0042 30.7 6.2 82 23-104 226-321 (344)
216 cd07943 DRE_TIM_HOA 4-hydroxy- 22.8 2.9E+02 0.0062 28.0 7.2 77 19-98 19-102 (263)
217 cd02933 OYE_like_FMN Old yello 22.3 2.2E+02 0.0049 30.2 6.5 75 25-101 155-261 (338)
218 cd00739 DHPS DHPS subgroup of 22.1 3.5E+02 0.0076 27.8 7.7 84 16-102 16-104 (257)
219 PRK08255 salicylyl-CoA 5-hydro 22.0 2.1E+02 0.0045 33.7 6.8 78 25-103 554-660 (765)
220 TIGR00259 thylakoid_BtpA membr 22.0 2.8E+02 0.006 29.0 7.0 69 27-105 162-231 (257)
221 cd07944 DRE_TIM_HOA_like 4-hyd 21.9 83 0.0018 32.3 3.1 50 277-326 162-217 (266)
222 PRK11320 prpB 2-methylisocitra 21.9 2.3E+02 0.005 30.0 6.5 64 27-92 29-100 (292)
223 PRK09389 (R)-citramalate synth 21.8 2.7E+02 0.0058 31.4 7.3 86 11-105 131-222 (488)
224 PRK07114 keto-hydroxyglutarate 21.7 76 0.0016 32.2 2.8 25 74-98 112-136 (222)
225 TIGR00977 LeuA_rel 2-isopropyl 21.7 2.5E+02 0.0054 32.0 7.1 77 19-103 151-232 (526)
226 TIGR03151 enACPred_II putative 21.2 3.4E+02 0.0074 28.6 7.5 75 28-108 122-197 (307)
227 cd07942 DRE_TIM_LeuA Mycobacte 21.1 3.7E+02 0.0081 28.2 7.7 75 19-99 153-239 (284)
228 cd02930 DCR_FMN 2,4-dienoyl-Co 21.0 2.5E+02 0.0055 29.8 6.6 76 25-101 140-244 (353)
229 cd02803 OYE_like_FMN_family Ol 20.9 4.8E+02 0.01 26.9 8.5 85 16-103 222-313 (327)
230 TIGR03551 F420_cofH 7,8-dideme 20.9 3.7E+02 0.008 28.4 7.8 74 19-98 70-155 (343)
231 PRK09140 2-dehydro-3-deoxy-6-p 20.8 5.9E+02 0.013 25.3 8.7 40 60-99 138-177 (206)
232 PRK00208 thiG thiazole synthas 20.6 3.2E+02 0.0069 28.7 7.0 30 73-102 175-205 (250)
233 PRK13111 trpA tryptophan synth 20.5 3.9E+02 0.0085 27.6 7.7 81 16-103 149-230 (258)
234 cd02068 radical_SAM_B12_BD B12 20.5 1.9E+02 0.0041 25.7 4.8 65 22-96 25-92 (127)
235 cd04724 Tryptophan_synthase_al 20.4 6.7E+02 0.015 25.3 9.2 79 12-96 3-106 (242)
236 PF04131 NanE: Putative N-acet 20.3 2.5E+02 0.0053 28.4 5.9 67 25-102 54-120 (192)
237 cd07940 DRE_TIM_IPMS 2-isoprop 20.1 3.8E+02 0.0083 27.2 7.5 79 18-106 16-101 (268)
238 TIGR01768 GGGP-family geranylg 20.1 1.6E+02 0.0035 30.1 4.7 54 24-88 16-69 (223)
239 COG1902 NemA NADH:flavin oxido 20.1 2.1E+02 0.0046 31.1 5.9 78 25-103 152-260 (363)
240 cd04734 OYE_like_3_FMN Old yel 20.1 2.4E+02 0.0052 30.0 6.2 79 25-104 144-252 (343)
241 TIGR00742 yjbN tRNA dihydrouri 20.1 2.8E+02 0.0061 29.4 6.7 79 9-99 2-85 (318)
242 cd02811 IDI-2_FMN Isopentenyl- 20.0 4E+02 0.0086 28.2 7.8 81 25-108 192-291 (326)
No 1
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-48 Score=404.75 Aligned_cols=200 Identities=18% Similarity=0.223 Sum_probs=175.2
Q ss_pred cccccccceeeeccccccccccccccccc---------hhhhhhcccCcccccceeeecccCCCCCccccccccccccCC
Q psy15335 196 HQSTHQEALIINTDDVASKSSEKDTLYTK---------SSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENG 266 (552)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---------~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~ 266 (552)
-|..-.-|+++.+|+|+|.++.. .+.+ +++..+.-+ .+.+...+.++||||.|.|+++.||+.+.++
T Consensus 148 ~Q~~iGsDI~m~LDe~~~~~~~~--~~~~~sv~rT~rW~~r~~~~~~-~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~- 223 (372)
T PRK01008 148 AQKDLGADIIIPLDELLPFHADP--TYFLQSCQRTYVWEKRSLDYHL-KNPRHQSMYGVIHGGIDPDQRKIGCKFVEDL- 223 (372)
T ss_pred HHHHHCCCEEEEccccCCCCCCH--HHHHHHHHHHHHHHHHHHHHHH-hCCccceEEEEecCCCCHHHHHHHHHHHHhC-
Confidence 56677789999999999986332 2222 222222211 1122345669999999999999999998874
Q ss_pred CCCCcccccCCCc--ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCCce
Q psy15335 267 LSNADSSSINGKN--ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQYE 339 (552)
Q Consensus 267 ~~~Fdg~AIGG~l--ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G~~ 339 (552)
+|+||||||++ ++++|+++|.++++.||++|||||||+ +|++|+ ||++|||||||++| ||+|++||++| +
T Consensus 224 --~~~GyaIGG~vge~~~~~~~il~~~~~~LP~~kPRyLmGvG~P~di~~~V~~GvD~FDcv~Ptr~AR~G~~lt~~G-~ 300 (372)
T PRK01008 224 --PFDGSAIGGSLGKNLQEMVEVVGVTTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILTKQG-P 300 (372)
T ss_pred --CCCEEEECCCCCCCHHHHHHHHHHHHhhCCCCCCeEEecCCCHHHHHHHHHhCCCeeeeccchhhhcCCEEEcCCC-c
Confidence 69999999976 668999999999999999999999999 999998 99999999999999 99999999999 9
Q ss_pred EEecCCccccCCCCccCCCCCccCCC-CCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 340 MWLQHPRYVTDFTPILAECECLTCQH-HTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 340 l~L~~~~y~~Df~PIde~C~C~tC~~-yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
++|++.+|+.||+||+++|+||||++ |||||||||++++|+++.+||++|||+++.+||+.||
T Consensus 301 i~i~~~~~~~d~~Pid~~C~C~~C~~~ytraYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR 364 (372)
T PRK01008 301 LKINNQRYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHHMQQVMKEIR 364 (372)
T ss_pred eecCchhhccCCCCCCCCCCCcCcCCCCCHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999
No 2
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-47 Score=397.85 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=181.4
Q ss_pred ccccccceeeecccccccccccc-------ccccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCCC
Q psy15335 197 QSTHQEALIINTDDVASKSSEKD-------TLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSN 269 (552)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~~ 269 (552)
|..---|+++-+|+|+|...+.+ .-+.+++|..+..++ ..+..+.++||||.|.||++.||+.+.++ +
T Consensus 129 Q~~lGsDI~m~lDe~~~~~a~~~~a~~s~erT~rwa~r~~~~~~~--~~~~~lfgivQGg~y~dLR~~sa~~l~~l---~ 203 (372)
T COG0343 129 QKDLGSDIIMILDECTPPPADREYAEKSVERTLRWAERSLEAHKR--LNDQALFGIVQGGTYEDLRRRSAEELNEL---D 203 (372)
T ss_pred HHHhCCceeeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc--cCCceEEEeecCCCcHHHHHHHHHHHHhC---C
Confidence 44444588999999999875433 346677777776543 45566669999999999999999999885 5
Q ss_pred CcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCCceEE
Q psy15335 270 ADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQYEMW 341 (552)
Q Consensus 270 Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G~~l~ 341 (552)
|+||||||++ ++++|.+||.++++.||++|||||||+ +|++|+ ||++||||||||+| ||+|++||.+| .++
T Consensus 204 f~gyaIGGl~vge~~~~m~~il~~~~~~Lp~~kPryLmGvG~P~~i~~aV~~GvDmFDcv~ptr~aR~g~~~t~~G-~~~ 282 (372)
T COG0343 204 FDGYAIGGLSVGEPKEDMVRILEATKPLLPEDKPRYLMGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLTRDG-RVN 282 (372)
T ss_pred CCceeecCccCCCCHHHHHHHHHHhhccCCCCCCEEeecCCCHHHHHHHHHhCCchhhccchhhhccCCcEEeecC-ccc
Confidence 9999999984 778999999999999999999999999 999997 99999999999999 99999999999 999
Q ss_pred ecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCCC
Q psy15335 342 LQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKNG 403 (552)
Q Consensus 342 L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r~ 403 (552)
|++++|+.|++|||++|+||||++|||||||||++++|.++.+|+++|||+++.+||++||-
T Consensus 283 i~~~k~~~d~~pld~~C~C~~C~~ysRayl~hL~~~~e~~~~~L~t~HNL~~~~~lm~~iR~ 344 (372)
T COG0343 283 IRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANEELGARLLTIHNLYFYLRLMKEIRQ 344 (372)
T ss_pred cchhhhhhcCCCCCCCCCCcccCCcccccHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999994
No 3
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=100.00 E-value=6.4e-46 Score=386.31 Aligned_cols=202 Identities=16% Similarity=0.219 Sum_probs=176.1
Q ss_pred cccccccceeeeccccccccccccc-------cccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCC
Q psy15335 196 HQSTHQEALIINTDDVASKSSEKDT-------LYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLS 268 (552)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~ 268 (552)
-|..-+-|+++.+|+|++.....+. -.+.+++..+..++ ......+.+|||||.+.++++.|++.+.++
T Consensus 128 ~q~~igsDI~m~LD~~~~~~~~~~~~~~av~rT~rW~~r~~~~~~~-~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~--- 203 (368)
T TIGR00430 128 IQYALGSDIIMAFDECTPYPADRDYAEKSTERTLRWAERCLEAHDR-RGNKQALFGIVQGGTYEDLRSQSAEGLIEL--- 203 (368)
T ss_pred HHHHhCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCCeeEEEEeCCCCCHHHHHHHHHHHHHC---
Confidence 4666778899999999987654432 11222333332221 113355669999999999999999988884
Q ss_pred CCcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCCceE
Q psy15335 269 NADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQYEM 340 (552)
Q Consensus 269 ~Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G~~l 340 (552)
+|+||||||+. +++++.+||.++++.||++|||||||+ +|++|+ +|++|||+|||++| ||+|++|+++| ++
T Consensus 204 ~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~~g-~i 282 (368)
T TIGR00430 204 DFPGYAIGGLSVGEPKEDMLRILEHTAPLLPKDKPRYLMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFVTEG-RI 282 (368)
T ss_pred CCCeeEeCCccCCCCHHHHHHHHHHHHhhCCcccceeecCCCCHHHHHHHHHcCCCEEEecCcccccCCCceECCCC-cE
Confidence 69999999974 667899999999999999999999999 999998 99999999999999 99999999999 99
Q ss_pred EecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 341 WLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 341 ~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
+|++.+|+.||+||+++|+||||++|||||||||++++|+++.+||++|||+++.+||+.||
T Consensus 283 ~l~~~~~~~D~~Pi~~~C~C~tC~~~traYLhHL~~~~E~l~~~LLt~HNl~~~~~l~~~iR 344 (368)
T TIGR00430 283 NIKNAKYKDDTRPLDEECDCYTCKNYSRAYLRHLIRCNELLGARLATLHNLHFYLRLMEKIR 344 (368)
T ss_pred eCCchhhhccCCCCCCCCCCccccccCHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999
No 4
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=1e-45 Score=384.44 Aligned_cols=201 Identities=17% Similarity=0.231 Sum_probs=175.5
Q ss_pred ccccccceeeecccccccccccc-------ccccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCCC
Q psy15335 197 QSTHQEALIINTDDVASKSSEKD-------TLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSN 269 (552)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~~ 269 (552)
|..-+-|+++.+|+|++....++ .-.+.+++..+..++. +....+.+|||||.|.|+++.|+++..+. +
T Consensus 133 q~~ig~DI~~~LD~~~~~~~~~~~~~~sv~rT~rw~~~~~~~~~~~-~~~~~lfgiVQGg~~~dLR~~sa~~l~~~---~ 208 (366)
T PRK00112 133 QYDLGSDIVMAFDECPPYPATYDYAKKSMERTLRWAERSRDAHDRL-ENDQALFGIVQGGVYEDLRRESAKGLVEI---D 208 (366)
T ss_pred HHHhCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCcceEEEEeeCCccHHHHHHHHHHHHhC---C
Confidence 55677789999999998764322 1223334444433321 11244569999999999999999988874 6
Q ss_pred CcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCCceEE
Q psy15335 270 ADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQYEMW 341 (552)
Q Consensus 270 Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G~~l~ 341 (552)
|+||||||+. +++++.++|.++++.||++|||||||+ +|++|+ +|++|||+|||++| ||+|++||.+| +++
T Consensus 209 ~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~p~r~Ar~G~alt~~g-~~~ 287 (366)
T PRK00112 209 FDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFG-RLN 287 (366)
T ss_pred CceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEecCCCCHHHHHHHHHcCCCEEeeCCccccccCCceeCCCc-cEE
Confidence 9999999985 678999999999999999999999999 999997 99999999999999 99999999999 999
Q ss_pred ecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 342 LQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 342 L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
|++.+|+.||+||+++|.||+|++|||||||||++++|+++.+||++|||+++.+||+.||
T Consensus 288 l~~~~~~~d~~Pi~~~C~C~~C~~~traYlhhL~~~~E~l~~~Ll~~HNl~~~~~~~~~iR 348 (366)
T PRK00112 288 IRNAKYKEDTRPLDPECDCYTCRNYSRAYLHHLFRAGEILGARLNTIHNLHYYQRLMEEIR 348 (366)
T ss_pred CCchhhhccCCCCCCCCCCcccCccCHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 5
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=100.00 E-value=1e-45 Score=384.57 Aligned_cols=201 Identities=17% Similarity=0.214 Sum_probs=173.8
Q ss_pred cccccccceeeeccccccccccccc-------cccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCC
Q psy15335 196 HQSTHQEALIINTDDVASKSSEKDT-------LYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLS 268 (552)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~ 268 (552)
-|..-+-|+++.+|+|++....++. -.+.+++..+..+ +++...+.+|||||.|.++++.|++.+.++
T Consensus 128 ~q~~ig~DI~m~LD~~~~~~~~~~~~~~av~rT~rw~~r~~~~~~--~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~--- 202 (367)
T TIGR00449 128 IQYALGSDIIMALDECTPPPADYDYAEESLERTLRWAEESLEYHK--RRNENALFGIVQGGTYPDLRRQSAEGLAEL--- 202 (367)
T ss_pred HHHHHCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh--ccCCceEEEEecCCCCHHHHHHHHHHHhhC---
Confidence 4566677889999999987643321 0111223333322 112245669999999999999999988874
Q ss_pred CCcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCCceE
Q psy15335 269 NADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQYEM 340 (552)
Q Consensus 269 ~Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G~~l 340 (552)
+|+||||||+. ++++|.++|.++++.||++|||||||+ +|++|+ +|++|||+|||++| ||+|++||++| ++
T Consensus 203 ~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~~g-~~ 281 (367)
T TIGR00449 203 DFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKDKPRYLMGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTTEG-RI 281 (367)
T ss_pred CCCeEEEeCcccCCCHHHHHHHHHHHHhhCCcccceEecCCCCHHHHHHHHHcCCCEEeeCCccccccCCeeECCCC-Cc
Confidence 69999999963 468999999999999999999999999 999997 99999999999999 99999999999 99
Q ss_pred EecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 341 WLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 341 ~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
+|++.+|+.||+||+++|+||||++|||||||||++++|+++.+||++|||+++.+||+.||
T Consensus 282 ~l~~~~~~~d~~Pi~~~C~C~~C~~~sraYlhhL~~~~E~l~~~Ll~~HNl~~~~~~~~~iR 343 (367)
T TIGR00449 282 KIKNAKYKDDTRPLDEPCDCYVCKNYSRAYLRHLIRCNELLGARLATEHNLHFSFRLIEKIR 343 (367)
T ss_pred cccchhhccCCCCCCCCCCCccccccCHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999
No 6
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=100.00 E-value=1e-44 Score=354.23 Aligned_cols=171 Identities=39% Similarity=0.593 Sum_probs=149.4
Q ss_pred cCCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCH
Q psy15335 5 ALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSP 84 (552)
Q Consensus 5 ~Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P 84 (552)
..+++.+|||||||.+.+||++|++++.+++++||+|||+++ ++ +++++.++|+.+.+.||++||||+||+|+|
T Consensus 51 ~~~~~~l~gvIqGg~~~~lR~~s~~~l~~~~~~g~~igGl~~-~~-----~~~~~~~~l~~i~~~lp~~~pr~l~G~~~P 124 (238)
T PF01702_consen 51 EDKKQSLFGVIQGGDDKDLRRRSAEELSEDGFDGYAIGGLSP-GE-----EKEERLEILEAIINNLPPDKPRYLLGVGTP 124 (238)
T ss_dssp HHCCSEEEEEE--TT-HHHHHHHHHHHHHSS-SEEEE-SSSS-SS-----HHHHHHHHHHHHHHCS-TTS-EEETTB-SH
T ss_pred cCCCcceeeeeCCCCCHHHHHHHHHHHHhcccccccccCCcC-CC-----CHHHHHHHHHHHHhhCCcccceeccCCCCH
Confidence 457889999999999999999999999998899999999997 44 478999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccChhHHHhhccCeEEeecccccCCcccCCCCceecCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15335 85 MNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIPLCNSSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGE 164 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (552)
.+|+.+|++|||+|||++|+++|++|+||||++
T Consensus 125 ~~i~~~v~~GvD~fDs~~p~~~A~~G~al~~~~----------------------------------------------- 157 (238)
T PF01702_consen 125 EEILEAVYLGVDLFDSSYPTRLARHGIALTFDG----------------------------------------------- 157 (238)
T ss_dssp HHHHHHHHTT--EEEESHHHHHHHTTEEEETTE-----------------------------------------------
T ss_pred HHHHHHHHcCCcEEcchHHHHHHhcceeecccc-----------------------------------------------
Confidence 999999999999999999999999999999988
Q ss_pred CCCCCCCCCCccCCcccCCcccccccccccccccccccceeeeccccccccccccccccchhhhhhcccCcccccceeee
Q psy15335 165 NGLSNADSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQH 244 (552)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~~~~~r~~~~~~v~ 244 (552)
T Consensus 158 -------------------------------------------------------------------------------- 157 (238)
T PF01702_consen 158 -------------------------------------------------------------------------------- 157 (238)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccccccCCCCCCcccccCCCcccccHHHHHHHHHhhccccCccccccCCccchhhccCCCCceecc
Q psy15335 245 PSINGKNGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTK 324 (552)
Q Consensus 245 piqgG~~~~l~~~sa~~~~~~~~~~Fdg~AIGG~lek~~~~~Iv~~~~~~LP~~kPrHL~Gi~P~dIfaValGvDtFDcv 324 (552)
T Consensus 158 -------------------------------------------------------------------------------- 157 (238)
T PF01702_consen 158 -------------------------------------------------------------------------------- 157 (238)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceeccCCceEEecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 325 SSEISDSLYKPRQYEMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 325 ~pAr~Gr~lt~~G~~l~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
+++|++.+|+.||+||+++|.||+|++|||||||||++++|+++.+||++|||+++.+|++.||
T Consensus 158 --------------~~~l~~~~~~~d~~pl~~~C~C~~C~~~trayl~hL~~~~e~l~~~Ll~~HNl~~~~~~~~~iR 221 (238)
T PF01702_consen 158 --------------TIDLRDAKYKDDFSPLEPGCSCPTCRNYTRAYLHHLLKAKEMLGPVLLSIHNLHHYLRFFKEIR 221 (238)
T ss_dssp --------------EEETTSGGGTTS-SBSSTT--SHHHHH-BHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------eEeecccccccCCCCCCCCCCCCCCcccCHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2678888999999999999999999999999999999999999999999999999999999998
No 7
>KOG3908|consensus
Probab=100.00 E-value=7.5e-40 Score=329.57 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=156.2
Q ss_pred cccccceeeecccCCCCCccccccccccccCCCCCCcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccc
Q psy15335 235 PRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSNADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDD 310 (552)
Q Consensus 235 ~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~~Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~d 310 (552)
++++.++-+ ||||....|++.++++..+ ..-.|+||||++ +|.+||++|..|++.||.+|||||||+ +|+|
T Consensus 185 ~d~Q~lFpI--iQGGLd~~LR~~c~~em~k---R~~~G~AiGGLSGGEeK~~Fwr~V~~ct~~LP~dkPRYlMGVGya~D 259 (396)
T KOG3908|consen 185 DDEQNLFPI--IQGGLDEGLRAECIAEMLK---RSVPGIAIGGLSGGEEKSEFWRMVAFCTSSLPPDKPRYLMGVGYAED 259 (396)
T ss_pred ccchhhhhh--hhcccchHHHHHHHHHHHh---cCCCceEecccCCCchHHHHHHHHHHHHccCCCCCCceeeccCcccc
Confidence 444555544 7999998888888777665 358999999997 889999999999999999999999999 9999
Q ss_pred hh-hccCCCCceecccc---ccCCceeccCCceEEecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHH
Q psy15335 311 VA-SKSSEKDTLYTKSS---EISDSLYKPRQYEMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLL 386 (552)
Q Consensus 311 If-aValGvDtFDcv~p---Ar~Gr~lt~~G~~l~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLL 386 (552)
|+ ||++|+||||||+| ||+|.++++.| .++|++.+|+.||.|||+.|.||||++|||||||+|.. +|..+..||
T Consensus 260 lVVCvaLG~DMfDCVyPTRTARFG~alv~~G-~~~l~~~k~k~D~~pid~~C~C~tC~~ytRaylh~l~~-~etv~~~ll 337 (396)
T KOG3908|consen 260 LVVCVALGSDMFDCVYPTRTARFGKALVDSG-DLQLRQKKYKSDFGPIDETCGCPTCKKYTRAYLHALVG-KETVGCHLL 337 (396)
T ss_pred eeeeehhCCchhhcccccchhhhcccccccc-ceeecchhhhhcccCCCCCCCCchhhhHHHHHHHHHcc-ccccceeee
Confidence 97 99999999999999 99999999998 99999999999999999999999999999999999997 999999999
Q ss_pred HhhhhhHHHhhhccCCC--CCCCCCccC
Q psy15335 387 SICNSSNGVSINGDKNG--TSNGVPSSI 412 (552)
Q Consensus 387 a~HNL~~~~~L~~~~r~--~~~~~ps~~ 412 (552)
++||+++..+||.++|- ..+..|+|+
T Consensus 338 tiHNi~yql~Lmr~vResI~~d~fp~Fv 365 (396)
T KOG3908|consen 338 TIHNIAYQLQLMRDVRESIQEDRFPQFV 365 (396)
T ss_pred ehhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999994 456788875
No 8
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=100.00 E-value=3.2e-39 Score=349.67 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=162.3
Q ss_pred ccccccceeeeccccccccccc-------cccccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCCC
Q psy15335 197 QSTHQEALIINTDDVASKSSEK-------DTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSN 269 (552)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~~ 269 (552)
|..-.-|.++.+|+|+|..... +.-.+++++..+..+ + ..+.|.+|||||.|.||++.||+.+.++ +
T Consensus 7 Q~~iGsDI~~~LD~~t~~~~~~~~a~~sverT~rwa~~~~~~~~--~-~~~~l~giVQGG~~~DLR~~Sa~~l~~~---~ 80 (540)
T TIGR00432 7 QRHIGSDIGTPLDIPTPPDVDYARAESELEITLERARESIELLE--G-AENLLNVPVQGSTHPDLRRFAAGEAAKL---G 80 (540)
T ss_pred HHHhCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh--c-ccCcEEEEEcCCCCHHHHHHHHHHHHhC---C
Confidence 4444557788999999987433 233455666665432 1 2356779999999999999999999885 6
Q ss_pred CcccccCCCccc------ccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCCc
Q psy15335 270 ADSSSINGKNEL------SNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQY 338 (552)
Q Consensus 270 Fdg~AIGG~lek------~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G~ 338 (552)
|+||||||+++. ++|.++|.++++.||++|||||||+ +|.+|+ +|++|||+|||++| ||+|++||++|
T Consensus 81 f~gyaIGG~v~~~e~y~~~~l~~iv~~~~~~LP~dkPryL~GvG~P~~i~~~V~lGvDlFD~v~ptr~Ar~G~~lT~~G- 159 (540)
T TIGR00432 81 GDIYPIGAVVPLMEAYRYRDLARVILESRSALPPVEPIHLFGCGHPMLFALAVALGCDLFDSAAYALYAKDDRYLTVYG- 159 (540)
T ss_pred CCEEEEcCcChHhhhccHHHHHHHHHHHHhhCCCCcceeecCCCCHHHHHHHHHhCCCcccccHHHHHHhcCeEEccCc-
Confidence 999999998643 4699999999999999999999999 999997 99999999999999 99999999999
Q ss_pred eEEecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 339 EMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 339 ~l~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
+++|++.+|+ +.+|+||+|++|||||||||+++++ .+||++|||+++.++|+.||
T Consensus 160 ~~~L~~~~~~------~~~C~C~~C~~ysrayL~hL~~~~~---~~Lla~HNL~~~~~~m~~iR 214 (540)
T TIGR00432 160 TKKLEELNLQ------YFPCSCPVCSNYTPEELRRMEKNER---ERLIAEHNLYVSFQEIETIK 214 (540)
T ss_pred ceehhhcccc------CCCCCCccccccCHHHHHHhhhccH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999873 3479999999999999999999665 79999999999999999999
No 9
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=1.8e-38 Score=340.55 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=162.3
Q ss_pred cccccccceeeeccccccccccc-------cccccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCC
Q psy15335 196 HQSTHQEALIINTDDVASKSSEK-------DTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLS 268 (552)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~ 268 (552)
-|..-.-|+++.+|+|+|..... +.-.+++++..+... ...+.|.+|||||.|.||++.||+.+.++
T Consensus 110 ~Q~~iGsDI~~~LD~~t~~~~~~~~~~~sv~rT~rwa~~~~~~~~---~~~~~l~giVQGg~~~dLR~~sa~~l~~~--- 183 (487)
T PRK13533 110 FQRKIGSDIGVPLDIPTPPDVDYEEAEEELEETLERLEEAAELIQ---DGDMLWVAPVQGGTYPDLREESAREASKL--- 183 (487)
T ss_pred HHHHhCCCEEeECCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh---ccCccEEEEecCCCCHHHHHHHHHHHHhC---
Confidence 35556678899999999976432 223344555555432 12356779999999999999999999885
Q ss_pred CCcccccCCCc---c---cccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCC
Q psy15335 269 NADSSSINGKN---E---LSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQ 337 (552)
Q Consensus 269 ~Fdg~AIGG~l---e---k~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G 337 (552)
+|+||||||+. + +++|.++|.++++.||++|||||||+ +|++|. +|++|||+|||++| ||+|++||++|
T Consensus 184 ~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~GvG~P~~i~~~V~lGvDlFD~v~ptr~Ar~G~~lT~~G 263 (487)
T PRK13533 184 GFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLFGAGHPMMFALAVALGCDLFDSAAYALYARDGRYLTVTG 263 (487)
T ss_pred CCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEeCCCCHHHHHHHHHhCCCceeccHHHHHHhcCeEEccCc
Confidence 69999999985 2 36899999999999999999999999 999996 99999999999999 99999999999
Q ss_pred ceEEecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 338 YEMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 338 ~~l~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
+++|++.+|. +|+||+|++|||||||||++++ +.+||++|||+++.++|+.||
T Consensus 264 -~~~l~~~~~~--------~C~C~~C~~ysrayL~~L~~~~---~~~Ll~~HNl~~~~~~m~~iR 316 (487)
T PRK13533 264 -TYRLEDLEYL--------PCSCPVCSKYTPKELREMPAEE---RERLLAEHNLYVTFEEIRRIK 316 (487)
T ss_pred -eEecccccCC--------CCCChhcCccCHHHHHhhhhcc---chhHHHHHHHHHHHHHHHHHH
Confidence 9999998775 6999999999999999999854 799999999999999999999
No 10
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=2e-37 Score=341.40 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=156.2
Q ss_pred cccccccceeeeccccccccccc-------cccccchhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCC
Q psy15335 196 HQSTHQEALIINTDDVASKSSEK-------DTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLS 268 (552)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~ 268 (552)
-|..-.-|+++.+|+|+|..... +.-..+++++.+. ...+.|.+|||||.|.||++.||+.+.++
T Consensus 109 ~Q~~iGsDI~~~LD~~t~~~~~~~~a~~sv~rT~~wa~~~~~~-----~~~~~lfgiVQGg~~~dLR~~sa~~l~~~--- 180 (639)
T PRK13534 109 FQEKIGVDIGTILDIPTPPDVSREKAEEDLEETLERAKEAIEI-----KEKLALNGTVQGSTYPDLRQKSAEEMSKM--- 180 (639)
T ss_pred HHHHhCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHhh-----hhcCcEEEeecCCCCHHHHHHHHHHHHhC---
Confidence 45566678899999999876422 2233444444442 11245669999999999999999998885
Q ss_pred CCcccccCCCc---ccccHHHHHH---HHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCC
Q psy15335 269 NADSSSINGKN---ELSNTSDIYS---SMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQ 337 (552)
Q Consensus 269 ~Fdg~AIGG~l---ek~~~~~Iv~---~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G 337 (552)
+|+||||||++ +.++++++++ .+++.||++|||||||+ +|.+|+ +|++|||+|||++| ||+|++||++|
T Consensus 181 ~f~g~aIGG~v~~~e~~~~~~lv~~i~~~~~~LP~dkPryL~GvG~P~~i~~~V~lGvD~FD~v~ptr~Ar~G~~lt~~G 260 (639)
T PRK13534 181 NFDIYPIGAVVPLMESYRYRDLVDIIINSKMHLPTNKPVHLFGAGHPMFFALAVALGCDLFDSAAYALYAKDDRYLTPEG 260 (639)
T ss_pred CCCeEEEcCcchHHhhhhHHHHHHHHHHHHhhCCCCCCeEEeCCCCHHHHHHHHHhCCCceeccHHHHHHhcCeEEecCC
Confidence 69999999986 3455444555 69999999999999999 999997 99999999999999 99999999999
Q ss_pred ceEEecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCC
Q psy15335 338 YEMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKN 402 (552)
Q Consensus 338 ~~l~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r 402 (552)
+++|++++ +++|.||+|++|||||||||++++ +.+||++|||+++.++|+.||
T Consensus 261 -~~~l~~~~--------d~~C~C~~C~~ytrayL~hL~~~~---~~~Ll~~HNl~~~~~~~~~iR 313 (639)
T PRK13534 261 -TLHLEELK--------EFPCSCPVCSKYTPKELREMPKEE---RTRLLAEHNLYVIFEEINRIK 313 (639)
T ss_pred -ceeccccc--------cCCCCCccccccCHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHH
Confidence 99999864 568999999999999999999854 799999999999999999999
No 11
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=100.00 E-value=2.6e-36 Score=295.17 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=135.9
Q ss_pred ccccccceeeecccccccccccccccc-------chhhhhhcccCcccccceeeecccCCCCCccccccccccccCCCCC
Q psy15335 197 QSTHQEALIINTDDVASKSSEKDTLYT-------KSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSN 269 (552)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------r~~e~~~~~~~~r~~~~~~v~piqgG~~~~l~~~sa~~~~~~~~~~ 269 (552)
|..-+-|+++.+|+++|....++..-+ .+++..+.. ......-+.+|||||.+.+++..+++.+.+ . +
T Consensus 7 q~~l~~Di~~~lD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~--~~~~~~~l~gvIqGg~~~~lR~~s~~~l~~--~-~ 81 (238)
T PF01702_consen 7 QEALGPDIAMALDDCTPYDASRKRAEKSVERTLRWLKECLEEH--EEDKKQSLFGVIQGGDDKDLRRRSAEELSE--D-G 81 (238)
T ss_dssp HHHHT-SEEE-------TT--HHHHHHHHHHHHHHHHHHHHHH--HHHCCSEEEEEE--TT-HHHHHHHHHHHHH--S-S
T ss_pred HHHHCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--ccCCCcceeeeeCCCCCHHHHHHHHHHHHh--c-c
Confidence 344456889999999988765533221 122222211 111223355899999999999999999988 3 7
Q ss_pred CcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceeccccccCCceeccCCceEEecC
Q psy15335 270 ADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSSEISDSLYKPRQYEMWLQH 344 (552)
Q Consensus 270 Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~pAr~Gr~lt~~G~~l~L~~ 344 (552)
|+||+|||.. +++++.++|..+.+.||++||||+||+ +|.+|+ +|++|||+|||++|
T Consensus 82 ~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~G~~~P~~i~~~v~~GvD~fDs~~p------------------ 143 (238)
T PF01702_consen 82 FDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLLGVGTPEEILEAVYLGVDLFDSSYP------------------ 143 (238)
T ss_dssp -SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHH------------------
T ss_pred cccccccCCcCCCCHHHHHHHHHHHHhhCCcccceeccCCCCHHHHHHHHHcCCcEEcchHH------------------
Confidence 9999999985 468999999999999999999999999 999997 99999999999988
Q ss_pred CccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCCCCCCCCCccCCCCCCCCCCCCC
Q psy15335 345 PRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSS 424 (552)
Q Consensus 345 ~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r~~~~~~ps~~~~~~~~~~~~~~ 424 (552)
T Consensus 144 -------------------------------------------------------------------------------- 143 (238)
T PF01702_consen 144 -------------------------------------------------------------------------------- 143 (238)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcCCcccccCCCcCCCCcccccccccccccccccchhhccCCCccccccCCCeeeeccccccccccCCCCce
Q psy15335 425 STNGENGLSNADSSSINGKNKLSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYE 504 (552)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TR~AR~G~~~T~~g~i~~~~~~p~~~~ 504 (552)
+|.||+|.+||+.+.+
T Consensus 144 -----------------------------------------------------~~~A~~G~al~~~~~~----------- 159 (238)
T PF01702_consen 144 -----------------------------------------------------TRLARHGIALTFDGTI----------- 159 (238)
T ss_dssp -----------------------------------------------------HHHHHTTEEEETTEEE-----------
T ss_pred -----------------------------------------------------HHHHhcceeecccceE-----------
Confidence 4678899999999988
Q ss_pred eeccCcccccCCCCCCCCCCCccccchhHHHHHHHHhCCCcchhhccC
Q psy15335 505 MWLQHPRYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552 (552)
Q Consensus 505 lnik~a~yk~D~~PiD~~C~C~tC~~ySRAYLhHL~ka~E~Lg~~LlT 552 (552)
+|++++|+.|++||++.|.||+|++|||||||||++++|+||++|++
T Consensus 160 -~l~~~~~~~d~~pl~~~C~C~~C~~~trayl~hL~~~~e~l~~~Ll~ 206 (238)
T PF01702_consen 160 -DLRDAKYKDDFSPLEPGCSCPTCRNYTRAYLHHLLKAKEMLGPVLLS 206 (238)
T ss_dssp -ETTSGGGTTS-SBSSTT--SHHHHH-BHHHHHHHHHTTHHHHHHHHH
T ss_pred -eecccccccCCCCCCCCCCCCCCcccCHHHHHHHHcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999874
No 12
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.4e-31 Score=274.38 Aligned_cols=108 Identities=35% Similarity=0.481 Sum_probs=103.0
Q ss_pred CCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHH
Q psy15335 6 LKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPM 85 (552)
Q Consensus 6 Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~ 85 (552)
..+|+||||||||.|+|||++||+++.+++|+||||||+++ ||+ +++|.+||.++++.||++|||||||||+|+
T Consensus 174 ~~~~~lfgivQGg~y~dLR~~sa~~l~~l~f~gyaIGGl~v-ge~-----~~~m~~il~~~~~~Lp~~kPryLmGvG~P~ 247 (372)
T COG0343 174 LNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSV-GEP-----KEDMVRILEATKPLLPEDKPRYLMGVGHPE 247 (372)
T ss_pred cCCceEEEeecCCCcHHHHHHHHHHHHhCCCCceeecCccC-CCC-----HHHHHHHHHHhhccCCCCCCEEeecCCCHH
Confidence 35899999999999999999999999999999999999998 764 889999999999999999999999999999
Q ss_pred HHHHHHHcCCccccChhHHHhhccCeEEeecccc
Q psy15335 86 NIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTR 119 (552)
Q Consensus 86 dIl~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~ 119 (552)
+|+.||++||||||||+|+|+||+|++||..|..
T Consensus 248 ~i~~aV~~GvDmFDcv~ptr~aR~g~~~t~~G~~ 281 (372)
T COG0343 248 DIVEAVALGVDMFDCVMPTRYARNGRLLTRDGRV 281 (372)
T ss_pred HHHHHHHhCCchhhccchhhhccCCcEEeecCcc
Confidence 9999999999999999999999999999997743
No 13
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=99.97 E-value=8.8e-31 Score=273.52 Aligned_cols=107 Identities=23% Similarity=0.247 Sum_probs=100.3
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
.+|++|||||||.++|||++||+++.+++|+||+||| ++ || ++++|.++|+++.+.||++|||||||+|+|++
T Consensus 196 ~~q~lfgiVQGG~~~dLR~~Sa~~l~~~~~~GyaIGG-~v-ge-----~~~~~~~il~~~~~~LP~~kPRyLmGvG~P~d 268 (372)
T PRK01008 196 RHQSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SL-GK-----NLQEMVEVVGVTTSNLSKERPVHLLGIGDLPS 268 (372)
T ss_pred ccceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-CC-CC-----CHHHHHHHHHHHHhhCCCCCCeEEecCCCHHH
Confidence 3589999999999999999999999999999999999 65 55 58999999999999999999999999999999
Q ss_pred HHHHHHcCCccccChhHHHhhccCeEEeeccccc
Q psy15335 87 IVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRH 120 (552)
Q Consensus 87 Il~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~ 120 (552)
|+.+|++|||||||++|+|+||+|+|||+.|+.+
T Consensus 269 i~~~V~~GvD~FDcv~Ptr~AR~G~~lt~~G~i~ 302 (372)
T PRK01008 269 IWATVGFGIDSFDSSYPTKAARHGLILTKQGPLK 302 (372)
T ss_pred HHHHHHhCCCeeeeccchhhhcCCEEEcCCCcee
Confidence 9999999999999999999999999999866443
No 14
>KOG3909|consensus
Probab=99.96 E-value=1.1e-29 Score=260.14 Aligned_cols=189 Identities=29% Similarity=0.430 Sum_probs=161.0
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
.-..+||.|-++.-..+|.+.+++-...++.||+..||+.|++. -++|.++|+++...||++|||.+.|+.+|.+
T Consensus 182 ~~~~i~gg~~~~dr~~~~~~~areq~~~~ygg~~f~gF~~n~~t-----~~~~l~lle~~~~~Lpedkpr~Isg~~~Ple 256 (414)
T KOG3909|consen 182 NTTKIFGGVPDLDRQYLTPIFAREQENQLYGGIAFLGFSNNKET-----DKEMLNLLEADLVGLPEDKPRCISGFESPLE 256 (414)
T ss_pred eeeeeeccccCcceeeeehhhhhhhhcccccceEeeeecCCccc-----HHHHhhccHHhhccCCCCCccccCCCCCHHH
Confidence 33456666666666667777788888899999999999987664 3788999999999999999999999999999
Q ss_pred HHHHHHcCCccccChhHHHhhccCeEEeecccccCCcccCCCCceecCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy15335 87 IVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIPLCNSSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENG 166 (552)
Q Consensus 87 Il~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (552)
|++||.+|||+||+++|+..++.|.||||+..++. + |
T Consensus 257 VLecIQrGIDlfdssfpyqate~g~AltfSfd~p~----------------------------~------~--------- 293 (414)
T KOG3909|consen 257 VLECIQRGIDLFDSSFPYQATEAGVALTFSFDPPS----------------------------K------D--------- 293 (414)
T ss_pred HHHHHHhccccccccchhhhhhcceEEEEccCCCc----------------------------h------h---------
Confidence 99999999999999999999999999999763322 0 0
Q ss_pred CCCCCCCCccCCcccCCcccccccccccccccccccceeeeccccccccccccccccchhhhhhcccCcccccceeeecc
Q psy15335 167 LSNADSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQHPS 246 (552)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~~~~~r~~~~~~v~pi 246 (552)
+ + +
T Consensus 294 ------------------------------------d--------~-------------------~-------------- 296 (414)
T KOG3909|consen 294 ------------------------------------D--------L-------------------N-------------- 296 (414)
T ss_pred ------------------------------------h--------h-------------------h--------------
Confidence 0 0 0
Q ss_pred cCCCCCccccccccccccCCCCCCcccccCCCcccccHHHHHHHHHhhccccCccccccCCccchhhccCCCCceecccc
Q psy15335 247 INGKNGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSS 326 (552)
Q Consensus 247 qgG~~~~l~~~sa~~~~~~~~~~Fdg~AIGG~lek~~~~~Iv~~~~~~LP~~kPrHL~Gi~P~dIfaValGvDtFDcv~p 326 (552)
.+ |+.
T Consensus 297 ----------------sk-------------------------------------------------ie~---------- 301 (414)
T KOG3909|consen 297 ----------------SK-------------------------------------------------IEL---------- 301 (414)
T ss_pred ----------------hc-------------------------------------------------eee----------
Confidence 00 001
Q ss_pred ccCCceeccCCceEEecCCccccCCCCccCCCCCccCCCCCHHHHhhhhccCccchhhHHHhhhhhHHHhhhccCCCCCC
Q psy15335 327 EISDSLYKPRQYEMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKNGTSN 406 (552)
Q Consensus 327 Ar~Gr~lt~~G~~l~L~~~~y~~Df~PIde~C~C~tC~~yTRAYLhhL~ka~E~l~~rLLa~HNL~~~~~L~~~~r~~~~ 406 (552)
+++++|.+|+.||.|+..+|.|+||++|||||||||++++|+|+..||-+||++....|...||-+++
T Consensus 302 ------------~ld~~dekfaeDftpl~sgC~CytC~kytRaYlhHLl~TrELLa~ILLm~HN~yhy~afF~~IReSl~ 369 (414)
T KOG3909|consen 302 ------------GLDMWDEKFAEDFTPLQSGCVCYTCRKYTRAYLHHLLQTRELLAWILLMLHNVYHYTAFFQGIRESLQ 369 (414)
T ss_pred ------------eeccchhhhhhhccccccCcceehhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999999999999999999999999999999999997765
Q ss_pred C
Q psy15335 407 G 407 (552)
Q Consensus 407 ~ 407 (552)
.
T Consensus 370 ~ 370 (414)
T KOG3909|consen 370 E 370 (414)
T ss_pred h
Confidence 4
No 15
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=99.96 E-value=3.8e-29 Score=260.74 Aligned_cols=107 Identities=35% Similarity=0.494 Sum_probs=101.3
Q ss_pred CCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHH
Q psy15335 8 DTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNI 87 (552)
Q Consensus 8 ~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dI 87 (552)
+|++|||||||.++|||++||+++.+++|+||+|||+++ || ++++|.++|+++++.||++||||+||+|+|++|
T Consensus 181 ~~~lfgiVQGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~-ge-----~~~~~~~~v~~~~~~lp~~kPryl~Gvg~P~~i 254 (366)
T PRK00112 181 DQALFGIVQGGVYEDLRRESAKGLVEIDFDGYAIGGLSV-GE-----PKEEMYRILEHTAPLLPEDKPRYLMGVGTPEDL 254 (366)
T ss_pred cceEEEEeeCCccHHHHHHHHHHHHhCCCceeEeccccC-CC-----CHHHHHHHHHHHHhhCCCcCCeEecCCCCHHHH
Confidence 488999999999999999999999999999999999997 66 478899999999999999999999999999999
Q ss_pred HHHHHcCCccccChhHHHhhccCeEEeeccccc
Q psy15335 88 VQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRH 120 (552)
Q Consensus 88 l~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~ 120 (552)
+.+|++|||||||++|+++||+|+|||+.+.++
T Consensus 255 ~~~v~~GvD~FD~~~p~r~Ar~G~alt~~g~~~ 287 (366)
T PRK00112 255 VEGVARGVDMFDCVMPTRNARNGTLFTSFGRLN 287 (366)
T ss_pred HHHHHcCCCEEeeCCccccccCCceeCCCccEE
Confidence 999999999999999999999999999976443
No 16
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=99.96 E-value=4.2e-29 Score=260.61 Aligned_cols=109 Identities=32% Similarity=0.479 Sum_probs=102.2
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
.+|.+|||||||.++|||++||+++.+++|+||+|||+++ ||+ +++|.++|+++++.||++|||||||+|+|++
T Consensus 176 ~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~-ge~-----~~~~~~iv~~~~~~lp~~kPryl~Gvg~P~~ 249 (368)
T TIGR00430 176 NKQALFGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSV-GEP-----KEDMLRILEHTAPLLPKDKPRYLMGVGTPED 249 (368)
T ss_pred CCeeEEEEeCCCCCHHHHHHHHHHHHHCCCCeeEeCCccC-CCC-----HHHHHHHHHHHHhhCCcccceeecCCCCHHH
Confidence 4589999999999999999999999999999999999997 663 7889999999999999999999999999999
Q ss_pred HHHHHHcCCccccChhHHHhhccCeEEeecccccC
Q psy15335 87 IVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHI 121 (552)
Q Consensus 87 Il~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~ 121 (552)
|+.+|++|||||||++|+++||+|+|||+.|++++
T Consensus 250 i~~~v~~GvD~FD~~~ptr~Ar~G~alt~~g~i~l 284 (368)
T TIGR00430 250 LLNAIRRGIDMFDCVMPTRNARNGTLFVTEGRINI 284 (368)
T ss_pred HHHHHHcCCCEEEecCcccccCCCceECCCCcEeC
Confidence 99999999999999999999999999998664433
No 17
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=99.95 E-value=6.9e-29 Score=258.84 Aligned_cols=108 Identities=31% Similarity=0.428 Sum_probs=101.6
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
+.|++|||||||.|+|||++|++++.+++|+||+|||+++ ||+ +++|.++|.++++.||++|||||||+|+|++
T Consensus 175 ~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~GyaIGGl~~-ge~-----~~~~~~~l~~~~~~lP~~kPryl~Gvg~P~~ 248 (367)
T TIGR00449 175 NENALFGIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSV-GEP-----KRDMLRILEHVAPLLPKDKPRYLMGVGTPEL 248 (367)
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHhhCCCCeEEEeCccc-CCC-----HHHHHHHHHHHHhhCCcccceEecCCCCHHH
Confidence 3589999999999999999999999999999999999976 764 6889999999999999999999999999999
Q ss_pred HHHHHHcCCccccChhHHHhhccCeEEeeccccc
Q psy15335 87 IVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRH 120 (552)
Q Consensus 87 Il~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~ 120 (552)
|+.+|++|||||||++|+++||+|+|||+.|+++
T Consensus 249 i~~~v~~GvD~FD~~~ptr~Ar~G~alt~~g~~~ 282 (367)
T TIGR00449 249 LANAVSLGIDMFDCVAPTRYARNGTLLTTEGRIK 282 (367)
T ss_pred HHHHHHcCCCEEeeCCccccccCCeeECCCCCcc
Confidence 9999999999999999999999999999966443
No 18
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=99.95 E-value=2.3e-28 Score=262.91 Aligned_cols=111 Identities=23% Similarity=0.192 Sum_probs=104.6
Q ss_pred CCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHH
Q psy15335 8 DTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNI 87 (552)
Q Consensus 8 ~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dI 87 (552)
+|.+|||||||.|+|||++||+++.+++|+||+|||+++ |+. ..+.++|.++|..+++.||++|||||||+|+|++|
T Consensus 157 ~~~l~giVQGg~~~dLR~~sa~~l~~~~f~gyaIGgl~~-~~e--~y~~~~~~~ii~~~~~~Lp~dkPryL~GvG~P~~i 233 (487)
T PRK13533 157 DMLWVAPVQGGTYPDLREESAREASKLGFDVYPIGAVVP-LME--RYRYDDLVDVVLAAKRGLGPGAPVHLFGAGHPMMF 233 (487)
T ss_pred CccEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCccc-ccc--cCCHHHHHHHHHHHHhhCCCCCceEEeCCCCHHHH
Confidence 589999999999999999999999999999999999997 432 23578999999999999999999999999999999
Q ss_pred HHHHHcCCccccChhHHHhhccCeEEeecccccC
Q psy15335 88 VQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHI 121 (552)
Q Consensus 88 l~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~ 121 (552)
+.||++|||||||++|+++||+|++||+.|++.+
T Consensus 234 ~~~V~lGvDlFD~v~ptr~Ar~G~~lT~~G~~~l 267 (487)
T PRK13533 234 ALAVALGCDLFDSAAYALYARDGRYLTVTGTYRL 267 (487)
T ss_pred HHHHHhCCCceeccHHHHHHhcCeEEccCceEec
Confidence 9999999999999999999999999999998876
No 19
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=99.95 E-value=3.4e-28 Score=264.16 Aligned_cols=112 Identities=22% Similarity=0.210 Sum_probs=103.3
Q ss_pred CCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHH
Q psy15335 8 DTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNI 87 (552)
Q Consensus 8 ~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dI 87 (552)
+|.||||||||.|+|||++||+++.+++|+||+|||+++.. +.+++++|.++|.++++.||++|||||||+|+|.+|
T Consensus 53 ~~~l~giVQGG~~~DLR~~Sa~~l~~~~f~gyaIGG~v~~~---e~y~~~~l~~iv~~~~~~LP~dkPryL~GvG~P~~i 129 (540)
T TIGR00432 53 ENLLNVPVQGSTHPDLRRFAAGEAAKLGGDIYPIGAVVPLM---EAYRYRDLARVILESRSALPPVEPIHLFGCGHPMLF 129 (540)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHHhCCCCEEEEcCcChHh---hhccHHHHHHHHHHHHhhCCCCcceeecCCCCHHHH
Confidence 48999999999999999999999999999999999976311 123578999999999999999999999999999999
Q ss_pred HHHHHcCCccccChhHHHhhccCeEEeecccccCC
Q psy15335 88 VQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIP 122 (552)
Q Consensus 88 l~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~~ 122 (552)
+.||++|||||||++|+++||+|++||+.|++.+-
T Consensus 130 ~~~V~lGvDlFD~v~ptr~Ar~G~~lT~~G~~~L~ 164 (540)
T TIGR00432 130 ALAVALGCDLFDSAAYALYAKDDRYLTVYGTKKLE 164 (540)
T ss_pred HHHHHhCCCcccccHHHHHHhcCeEEccCcceehh
Confidence 99999999999999999999999999999988764
No 20
>KOG3908|consensus
Probab=99.94 E-value=4e-28 Score=245.15 Aligned_cols=113 Identities=28% Similarity=0.303 Sum_probs=107.2
Q ss_pred cCCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCH
Q psy15335 5 ALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSP 84 (552)
Q Consensus 5 ~Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P 84 (552)
+..+|.||.|||||.+.+||++|++++.++...|+|||||++ || ++.++.++|..++..||++|||||||||.|
T Consensus 184 R~d~Q~lFpIiQGGLd~~LR~~c~~em~kR~~~G~AiGGLSG-GE-----eK~~Fwr~V~~ct~~LP~dkPRYlMGVGya 257 (396)
T KOG3908|consen 184 RDDEQNLFPIIQGGLDEGLRAECIAEMLKRSVPGIAIGGLSG-GE-----EKSEFWRMVAFCTSSLPPDKPRYLMGVGYA 257 (396)
T ss_pred CccchhhhhhhhcccchHHHHHHHHHHHhcCCCceEecccCC-Cc-----hHHHHHHHHHHHHccCCCCCCceeeccCcc
Confidence 556799999999999999999999999999999999999996 77 489999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccChhHHHhhccCeEEeecccccCCc
Q psy15335 85 MNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIPL 123 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~~~ 123 (552)
.|++-||++|+|||||+||+|.||.|.||+.+|..++--
T Consensus 258 ~DlVVCvaLG~DMfDCVyPTRTARFG~alv~~G~~~l~~ 296 (396)
T KOG3908|consen 258 EDLVVCVALGSDMFDCVYPTRTARFGKALVDSGDLQLRQ 296 (396)
T ss_pred cceeeeehhCCchhhcccccchhhhccccccccceeecc
Confidence 999999999999999999999999999999999776643
No 21
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=99.94 E-value=4.7e-27 Score=259.62 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=100.8
Q ss_pred CCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHH
Q psy15335 8 DTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNI 87 (552)
Q Consensus 8 ~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dI 87 (552)
.|+||||||||.|+|||++||+++.+++|+||+|||+++ .+. ..+.+++.++|.++++.||++|||||||+|+|.+|
T Consensus 154 ~~~lfgiVQGg~~~dLR~~sa~~l~~~~f~g~aIGG~v~-~~e--~~~~~~lv~~i~~~~~~LP~dkPryL~GvG~P~~i 230 (639)
T PRK13534 154 KLALNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGAVVP-LME--SYRYRDLVDIIINSKMHLPTNKPVHLFGAGHPMFF 230 (639)
T ss_pred cCcEEEeecCCCCHHHHHHHHHHHHhCCCCeEEEcCcch-HHh--hhhHHHHHHHHHHHHhhCCCCCCeEEeCCCCHHHH
Confidence 389999999999999999999999999999999999763 221 11246688888889999999999999999999999
Q ss_pred HHHHHcCCccccChhHHHhhccCeEEeecccccCC
Q psy15335 88 VQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIP 122 (552)
Q Consensus 88 l~aValGVDmFDcv~Ptr~AR~G~aLTf~~t~~~~ 122 (552)
+.||++|||||||++|+++||+|++||+.|++++-
T Consensus 231 ~~~V~lGvD~FD~v~ptr~Ar~G~~lt~~G~~~l~ 265 (639)
T PRK13534 231 ALAVALGCDLFDSAAYALYAKDDRYLTPEGTLHLE 265 (639)
T ss_pred HHHHHhCCCceeccHHHHHHhcCeEEecCCceecc
Confidence 99999999999999999999999999999987764
No 22
>KOG3909|consensus
Probab=99.86 E-value=7e-23 Score=210.36 Aligned_cols=50 Identities=44% Similarity=0.864 Sum_probs=47.3
Q ss_pred CceeeccCcccccCCCCCCCCCCCccccchhHHHHHHHHhCCCcchhhcc
Q psy15335 502 QYEMWLQHPRYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLL 551 (552)
Q Consensus 502 ~~~lnik~a~yk~D~~PiD~~C~C~tC~~ySRAYLhHL~ka~E~Lg~~Ll 551 (552)
++.|++++++|++||.|+..+|.||||++|||||||||++++|+|||+|+
T Consensus 300 e~~ld~~dekfaeDftpl~sgC~CytC~kytRaYlhHLl~TrELLa~ILL 349 (414)
T KOG3909|consen 300 ELGLDMWDEKFAEDFTPLQSGCVCYTCRKYTRAYLHHLLQTRELLAWILL 349 (414)
T ss_pred eeeeccchhhhhhhccccccCcceehhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44469999999999999999999999999999999999999999999986
No 23
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.0085 Score=66.15 Aligned_cols=49 Identities=33% Similarity=0.348 Sum_probs=45.2
Q ss_pred ccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhccCeEEeecc
Q psy15335 67 VPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQY 117 (552)
Q Consensus 67 ~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR~G~aLTf~~ 117 (552)
....| ++.++-|+..|..|+.+|++|||.||.++.-.+|-.|.+||..+
T Consensus 91 r~~~p--~~~~~s~~~~P~~iplLvYlGvD~fD~~~~~i~~~~g~~ft~~~ 139 (519)
T COG1549 91 RYRFP--KALYASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTPFG 139 (519)
T ss_pred hccCC--CceeecCCCChhhhhhHHhhCcchhhhHHHHHHHhcCccccccc
Confidence 34444 99999999999999999999999999999999999999999876
No 24
>PHA01745 hypothetical protein
Probab=93.37 E-value=0.075 Score=55.25 Aligned_cols=99 Identities=17% Similarity=0.029 Sum_probs=68.2
Q ss_pred ceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHH
Q psy15335 10 CVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQ 89 (552)
Q Consensus 10 ~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~ 89 (552)
.++.|++.= ..+.-.++.+..++. .+-.|+||+.+ +...=....-.+++..+++. -++.|++|+|+|..+..
T Consensus 102 ~vIPViH~Y-~~e~l~~~ldfysqy-~d~iAfGG~Vp---~s~~~sr~~a~~~y~~vRk~---~~~LHvLG~gSP~~~pi 173 (306)
T PHA01745 102 RIIPVIHLY-PVREVDEAIDFYSQY-TDYIAFGGIVA---SSKLKILIYAFPWYYYIRKY---VKRLHVLGMSAPYFRQV 173 (306)
T ss_pred ceeeEEeec-CHHHHHHHHHHHHhh-hhhhhcccccc---HHhhhhHHHHHHHHHHHHHH---hhhhhccccCCchheee
Confidence 456666665 444444555666652 34789999986 11110111223455555552 33579999999999998
Q ss_pred HHHcCCccccChhHHHhhccCeEEeeccc
Q psy15335 90 FVQRGIDMFDSGLPLVLADRGCAFTFQYT 118 (552)
Q Consensus 90 aValGVDmFDcv~Ptr~AR~G~aLTf~~t 118 (552)
+ +|+|.-|++.....|-+|..|-|.+.
T Consensus 174 l--~~vdS~DTsTwr~KAaygkVilpGgg 200 (306)
T PHA01745 174 F--YDADSMDTSTYTVKAIHREIFWFDGT 200 (306)
T ss_pred e--eccccccchhhhhhhhcceEecCCCc
Confidence 8 89999999999999999999999773
No 25
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=91.71 E-value=0.5 Score=52.78 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
...+.-.+-|+++.++|.+.+.|.-.. ..+.++++.++|..+++.+|++.|.+++.-- .....+.|++.|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDta------Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG 225 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMA------ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG 225 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCc------cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC
Confidence 357788888999999999999987443 3567999999999999999989999987642 367899999999
Q ss_pred CccccChhHHH
Q psy15335 95 IDMFDSGLPLV 105 (552)
Q Consensus 95 VDmFDcv~Ptr 105 (552)
+|.||++.--.
T Consensus 226 ad~vDtai~Gl 236 (499)
T PRK12330 226 VDVVDTAISSM 236 (499)
T ss_pred CCEEEeecccc
Confidence 99999987544
No 26
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.24 E-value=1.3 Score=45.27 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHc
Q psy15335 18 GLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQR 93 (552)
Q Consensus 18 G~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aVal 93 (552)
+...+.-.+-++++.+.|.+.+.|.- +...|.++++.+++..+++.+|++.|..+++-= .....+.|++.
T Consensus 134 ~~~~~~~~~~~~~~~~~g~~~i~l~D------T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~a 207 (266)
T cd07944 134 GYSDEELLELLELVNEIKPDVFYIVD------SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIEL 207 (266)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec------CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHc
Confidence 36678888889999999999998863 333568999999999999999988888776542 36788999999
Q ss_pred CCccccChhH
Q psy15335 94 GIDMFDSGLP 103 (552)
Q Consensus 94 GVDmFDcv~P 103 (552)
|+|.||++..
T Consensus 208 Ga~~vd~s~~ 217 (266)
T cd07944 208 GVEIIDATVY 217 (266)
T ss_pred CCCEEEEecc
Confidence 9999999864
No 27
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.83 E-value=1.2 Score=45.71 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=66.5
Q ss_pred ccCCCHHHHHHHHHHHHc-CCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCH--HH----HH
Q psy15335 16 QGGLDLSLRRYCAELYAT-RDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSP--MN----IV 88 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~-l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P--~d----Il 88 (552)
.|..+.+-=++-++.+.+ .|++|+.+.|.. ||- ..|+.+|..++++.+++..+...|. +.|+|.+ .+ .-
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~Gst--GE~-~~Ls~eEr~~~~~~~~~~~~~~~~v-iagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGST--GEA-FLLSTEEKKQVLEIVAEEAKGKVKL-IAQVGSVNTAEAQELAK 93 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCc--ccc-ccCCHHHHHHHHHHHHHHhCCCCCE-EecCCCCCHHHHHHHHH
Confidence 488888888889999999 999999999976 454 3468999999999999998866665 4899863 33 34
Q ss_pred HHHHcCCccccChhHH
Q psy15335 89 QFVQRGIDMFDSGLPL 104 (552)
Q Consensus 89 ~aValGVDmFDcv~Pt 104 (552)
.+.++|+|-+=...|+
T Consensus 94 ~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 94 YATELGYDAISAVTPF 109 (293)
T ss_pred HHHHcCCCEEEEeCCc
Confidence 5678899876666554
No 28
>PLN02417 dihydrodipicolinate synthase
Probab=88.65 E-value=1.3 Score=45.26 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=67.3
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHHH----
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIVQ---- 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl~---- 89 (552)
+|..+.+.=++-++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++..+...|. +.|+|. ..+.++
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst--GE~-~~ls~~Er~~~~~~~~~~~~~~~pv-i~gv~~~~t~~~i~~a~~ 91 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTT--GEG-QLMSWDEHIMLIGHTVNCFGGKIKV-IGNTGSNSTREAIHATEQ 91 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccC--cch-hhCCHHHHHHHHHHHHHHhCCCCcE-EEECCCccHHHHHHHHHH
Confidence 588899988899999999999999999977 453 4568999999999999988766664 489985 555554
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|.++|+|-+=+..|+
T Consensus 92 a~~~Gadav~~~~P~ 106 (280)
T PLN02417 92 GFAVGMHAALHINPY 106 (280)
T ss_pred HHHcCCCEEEEcCCc
Confidence 568899976666664
No 29
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=88.32 E-value=1 Score=49.47 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcCCc
Q psy15335 21 LSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRGID 96 (552)
Q Consensus 21 ~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValGVD 96 (552)
.+.-.+=|++|.+++++-++|=-.++ .+.+..-+++|..+.+.+| -|.+|+--. .++-.+.||+.|||
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaG------lltP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD 226 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAG------LLTPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVD 226 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccc------cCChHHHHHHHHHHHHhcC--CeeEEecccccchHHHHHHHHHHhCcc
Confidence 45667789999999999999975553 3468888999999888888 677664322 58899999999999
Q ss_pred cccChhH
Q psy15335 97 MFDSGLP 103 (552)
Q Consensus 97 mFDcv~P 103 (552)
++|++..
T Consensus 227 ~iDTAis 233 (472)
T COG5016 227 GIDTAIS 233 (472)
T ss_pred hhhhhhc
Confidence 9999874
No 30
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.82 E-value=1.4 Score=50.38 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
...+.-.+-++++.++|.+-+.|--.. ..+.++++.+++..+++.++ .|.++++-- .....+.|++.|
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDta------G~l~P~~v~~lv~alk~~~~--ipi~~H~Hnt~Gla~an~laAieaG 222 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDMA------GLLTPTVTVELYAGLKQATG--LPVHLHSHSTSGLASICHYEAVLAG 222 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcc------cCCCHHHHHHHHHHHHhhcC--CEEEEEeCCCCCcHHHHHHHHHHhC
Confidence 567888889999999999999987433 35679999999999998874 888886542 268889999999
Q ss_pred CccccChhHHHhh
Q psy15335 95 IDMFDSGLPLVLA 107 (552)
Q Consensus 95 VDmFDcv~Ptr~A 107 (552)
+|+||++..-.-.
T Consensus 223 ad~iD~ai~glGg 235 (596)
T PRK14042 223 CNHIDTAISSFSG 235 (596)
T ss_pred CCEEEeccccccC
Confidence 9999998754433
No 31
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.18 E-value=2 Score=42.20 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC---C-CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP---W-SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv---G-~P~dIl~aValG 94 (552)
...+.-.+-++.+.+.|++.+.+.-.. ..+.++++.+++..+++.+|. .|..+++- | -....+.|+..|
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~------G~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn~~gla~an~laA~~aG 215 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTV------GLATPEEVAELVKALREALPD-VPLGLHTHNTLGLAVANSLAALEAG 215 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhc------CCcCHHHHHHHHHHHHHhCCC-CeEEEEeCCCCChHHHHHHHHHHcC
Confidence 788888889999999999998876333 235789999999999999986 77766542 1 267889999999
Q ss_pred CccccChhHHHh
Q psy15335 95 IDMFDSGLPLVL 106 (552)
Q Consensus 95 VDmFDcv~Ptr~ 106 (552)
+|.||++..=.=
T Consensus 216 ~~~id~s~~G~G 227 (265)
T cd03174 216 ADRVDGSVNGLG 227 (265)
T ss_pred CCEEEecccccc
Confidence 999999875443
No 32
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.70 E-value=1.9 Score=44.03 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=64.5
Q ss_pred ccCCCHHHHHHHHHHHHcC-CcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHH----H
Q psy15335 16 QGGLDLSLRRYCAELYATR-DVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNI----V 88 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l-~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dI----l 88 (552)
.|..+.+.=++-++.+.+. |++|+.+.|.. ||- ..|+.+|..++++.+++......|.+ .|+|. ..+. -
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~Gst--GE~-~~Lt~~Er~~~~~~~~~~~~~~~~vi-agv~~~~~~~ai~~a~ 90 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGST--GEG-FLLSVEERKQIAEIVAEAAKGKVTLI-AHVGSLNLKESQELAK 90 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCC--cCc-ccCCHHHHHHHHHHHHHHhCCCCeEE-eccCCCCHHHHHHHHH
Confidence 4788888888889999888 99999999976 454 45689999999999998887666655 78875 3333 3
Q ss_pred HHHHcCCccccChhHH
Q psy15335 89 QFVQRGIDMFDSGLPL 104 (552)
Q Consensus 89 ~aValGVDmFDcv~Pt 104 (552)
.+.++|+|-+=...|+
T Consensus 91 ~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 91 HAEELGYDAISAITPF 106 (288)
T ss_pred HHHHcCCCEEEEeCCC
Confidence 5677888866555444
No 33
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=86.37 E-value=2.5 Score=46.71 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC---C-CHHHHHHHHHcCC
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP---W-SPMNIVQFVQRGI 95 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv---G-~P~dIl~aValGV 95 (552)
..+.-.+-++++.++|.+.+.|.-.. ..+.+.++.++|..+++.++ .|.++++- | .....+.|++.|+
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~------G~l~P~~v~~lv~alk~~~~--~pi~~H~Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMA------GILTPYVAYELVKRIKEAVT--VPLEVHTHATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC------CCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCcHHHHHHHHHHcCC
Confidence 45667788999999999999987433 34678999999999998885 78888542 2 3788999999999
Q ss_pred ccccChhH
Q psy15335 96 DMFDSGLP 103 (552)
Q Consensus 96 DmFDcv~P 103 (552)
|+||++..
T Consensus 224 d~vD~sv~ 231 (448)
T PRK12331 224 DIIDTAIS 231 (448)
T ss_pred CEEEeecc
Confidence 99999875
No 34
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=86.37 E-value=2.8 Score=43.03 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=63.5
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFV 91 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aV 91 (552)
.|=...+.-.+-++++.++|.+.+.|--.. ..+.+.++.+++..+++.+| +.|..+++-- .....+.|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~------G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hnd~GlA~AN~laA~ 215 (274)
T cd07938 143 EGEVPPERVAEVAERLLDLGCDEISLGDTI------GVATPAQVRRLLEAVLERFP-DEKLALHFHDTRGQALANILAAL 215 (274)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCC------CccCHHHHHHHHHHHHHHCC-CCeEEEEECCCCChHHHHHHHHH
Confidence 344678888999999999999998886333 34578999999999999887 4676665432 367889999
Q ss_pred HcCCccccChh
Q psy15335 92 QRGIDMFDSGL 102 (552)
Q Consensus 92 alGVDmFDcv~ 102 (552)
..|+|.||++.
T Consensus 216 ~aGa~~id~t~ 226 (274)
T cd07938 216 EAGVRRFDSSV 226 (274)
T ss_pred HhCCCEEEEec
Confidence 99999999876
No 35
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=85.95 E-value=2.2 Score=47.35 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC---C-CHHHHHHHHHcCC
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP---W-SPMNIVQFVQRGI 95 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv---G-~P~dIl~aValGV 95 (552)
..+.-.+-++++.++|.+.+.|.-.. ..+.+.++.++|..+++.++ .|.+++.- | .....+.|++.|+
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~------G~l~P~~v~~Lv~~lk~~~~--vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMA------GLLTPKRAYELVKALKKKFG--VPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcc------CCcCHHHHHHHHHHHHHhcC--CceEEEecCCCCcHHHHHHHHHHhCC
Confidence 45777788899999999999987444 34678999999999998886 78888653 2 3788999999999
Q ss_pred ccccChhH
Q psy15335 96 DMFDSGLP 103 (552)
Q Consensus 96 DmFDcv~P 103 (552)
|.||++..
T Consensus 223 d~vD~sv~ 230 (467)
T PRK14041 223 DMFDTAIS 230 (467)
T ss_pred CEEEeecc
Confidence 99999875
No 36
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=85.88 E-value=1 Score=45.81 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=59.3
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHH----HHH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMN----IVQ 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~d----Il~ 89 (552)
.|..+.+.=++-++.+.+.|++|+.++|.. ||. ..|..+|..++++.+++..+...|.+ .|+|. ..+ .-.
T Consensus 16 dg~id~~~~~~~i~~l~~~Gv~gl~~~Gst--GE~-~~Lt~~Er~~l~~~~~~~~~~~~~vi-~gv~~~st~~~i~~a~~ 91 (289)
T PF00701_consen 16 DGSIDEDALKRLIDFLIEAGVDGLVVLGST--GEF-YSLTDEERKELLEIVVEAAAGRVPVI-AGVGANSTEEAIELARH 91 (289)
T ss_dssp TSSB-HHHHHHHHHHHHHTTSSEEEESSTT--TTG-GGS-HHHHHHHHHHHHHHHTTSSEEE-EEEESSSHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCCEEEECCCC--ccc-ccCCHHHHHHHHHHHHHHccCceEEE-ecCcchhHHHHHHHHHH
Confidence 367888888889999999999999999977 454 44678999999999999998777765 68885 333 344
Q ss_pred HHHcCCcccc
Q psy15335 90 FVQRGIDMFD 99 (552)
Q Consensus 90 aValGVDmFD 99 (552)
+.++|+|-+-
T Consensus 92 a~~~Gad~v~ 101 (289)
T PF00701_consen 92 AQDAGADAVL 101 (289)
T ss_dssp HHHTT-SEEE
T ss_pred HhhcCceEEE
Confidence 5677877443
No 37
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=85.84 E-value=2.5 Score=43.76 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=64.1
Q ss_pred eeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHH
Q psy15335 14 PIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQ 89 (552)
Q Consensus 14 IVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~ 89 (552)
+..|-..++.-.+-++++.+.|.+.+.|.-.. ..+.+.++.+++..+++.+| +.|..+++-- .....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~------G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hn~~Gla~AN~la 219 (287)
T PRK05692 147 PYEGEVPPEAVADVAERLFALGCYEISLGDTI------GVGTPGQVRAVLEAVLAEFP-AERLAGHFHDTYGQALANIYA 219 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEecccc------CccCHHHHHHHHHHHHHhCC-CCeEEEEecCCCCcHHHHHHH
Confidence 44566788999999999999999998886333 34578999999999998887 3455554331 2678899
Q ss_pred HHHcCCccccChh
Q psy15335 90 FVQRGIDMFDSGL 102 (552)
Q Consensus 90 aValGVDmFDcv~ 102 (552)
|++.|+|.||++.
T Consensus 220 A~~aG~~~id~s~ 232 (287)
T PRK05692 220 SLEEGITVFDASV 232 (287)
T ss_pred HHHhCCCEEEEEc
Confidence 9999999999976
No 38
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=85.76 E-value=2.8 Score=42.27 Aligned_cols=84 Identities=14% Similarity=-0.004 Sum_probs=64.9
Q ss_pred cCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHH
Q psy15335 17 GGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQ 92 (552)
Q Consensus 17 GG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aVa 92 (552)
+...++.-.+-++.+.+.|.+.+.|.- +...+.++++.+++..+++.+|. .|..+++-= .....+.|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~D------T~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~GlA~AN~laAi~ 208 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTD------SAGAMLPDDVRERVRALREALDP-TPVGFHGHNNLGLAVANSLAAVE 208 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcC------CCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecCCcchHHHHHHHHHH
Confidence 446788888899999999999988863 33356799999999999999985 566664432 3567889999
Q ss_pred cCCccccChhHHHhh
Q psy15335 93 RGIDMFDSGLPLVLA 107 (552)
Q Consensus 93 lGVDmFDcv~Ptr~A 107 (552)
.|+|.||++..-.=.
T Consensus 209 aGa~~vd~s~~GlG~ 223 (263)
T cd07943 209 AGATRIDGSLAGLGA 223 (263)
T ss_pred hCCCEEEeecccccC
Confidence 999999998754433
No 39
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=85.66 E-value=2.6 Score=42.68 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.2
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHH----H
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIV----Q 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl----~ 89 (552)
.|..+.+.=++-++.+.+.|++|+.+.|... |- ..|+.+|..++++.+++......|.+ .|+|. ..+.+ .
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstG--E~-~~lt~~Er~~l~~~~~~~~~~~~~vi-~gv~~~~~~~~~~~a~~ 90 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTG--ES-PTLSDEEHEAVIEAVVEAVNGRVPVI-AGTGSNNTAEAIELTKR 90 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCc--ch-hhCCHHHHHHHHHHHHHHhCCCCcEE-eccCCccHHHHHHHHHH
Confidence 5778888888899999999999999998773 54 45689999999999999887666644 88885 44443 4
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|.+.|+|-+=...|.
T Consensus 91 a~~~G~d~v~~~~P~ 105 (284)
T cd00950 91 AEKAGADAALVVTPY 105 (284)
T ss_pred HHHcCCCEEEEcccc
Confidence 567788865555554
No 40
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=85.45 E-value=1.9 Score=42.25 Aligned_cols=88 Identities=15% Similarity=0.003 Sum_probs=65.1
Q ss_pred eEEeec-cCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-----cCCCCH
Q psy15335 11 VIAPIQ-GGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-----QGPWSP 84 (552)
Q Consensus 11 LfGIVQ-GG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-----mGvG~P 84 (552)
-|+... +...++.-.+.++.+.+.+.+.+.|.-.. ..+.++++.+++..+.+.+|+ .|.-+ +|.+ .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~------G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~Gla-~ 196 (237)
T PF00682_consen 125 AFGCEDASRTDPEELLELAEALAEAGADIIYLADTV------GIMTPEDVAELVRALREALPD-IPLGFHAHNDLGLA-V 196 (237)
T ss_dssp EEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETT------S-S-HHHHHHHHHHHHHHSTT-SEEEEEEBBTTS-H-H
T ss_pred EeCccccccccHHHHHHHHHHHHHcCCeEEEeeCcc------CCcCHHHHHHHHHHHHHhccC-CeEEEEecCCccch-h
Confidence 445444 44677888889999999999999887333 346789999999999999997 77665 4554 6
Q ss_pred HHHHHHHHcCCccccChhHHHh
Q psy15335 85 MNIVQFVQRGIDMFDSGLPLVL 106 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~Ptr~ 106 (552)
...+.|+..|+|.||++..=.=
T Consensus 197 An~laA~~aGa~~id~t~~GlG 218 (237)
T PF00682_consen 197 ANALAALEAGADRIDGTLGGLG 218 (237)
T ss_dssp HHHHHHHHTT-SEEEEBGGGGS
T ss_pred HHHHHHHHcCCCEEEccCccCC
Confidence 7899999999999999875443
No 41
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=85.38 E-value=2 Score=44.64 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=67.0
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHHH----
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIVQ---- 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl~---- 89 (552)
+|..+.+.=++-++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++......|.+ .|+|+ ..+.++
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst--GE~-~~Lt~eEr~~v~~~~~~~~~grvpvi-~Gv~~~~t~~ai~~a~~ 98 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTF--GEC-ATLTWEEKQAFVATVVETVAGRVPVF-VGATTLNTRDTIARTRA 98 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccc--ccc-hhCCHHHHHHHHHHHHHHhCCCCCEE-EEeccCCHHHHHHHHHH
Confidence 488899988888999999999999999877 453 45689999999999999887777755 88874 555554
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|.++|+|-+=...|+
T Consensus 99 A~~~Gad~vlv~~P~ 113 (309)
T cd00952 99 LLDLGADGTMLGRPM 113 (309)
T ss_pred HHHhCCCEEEECCCc
Confidence 456799977666664
No 42
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.92 E-value=2.3 Score=39.27 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=58.0
Q ss_pred eEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCH------
Q psy15335 11 VIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSP------ 84 (552)
Q Consensus 11 LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P------ 84 (552)
++++.||-.+.+--++-++.+.+.|++|+.+.| ++++.+.+..+..+...+.|+|.+
T Consensus 2 ~~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~g-----------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~ 64 (201)
T cd00945 2 DLTLLHPDATLEDIAKLCDEAIEYGFAAVCVNP-----------------GYVRLAADALAGSDVPVIVVVGFPTGLTTT 64 (201)
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCcEEEECH-----------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcH
Confidence 455667777888888899999999999999874 334445555554245566888876
Q ss_pred ----HHHHHHHHcCCccccChhHHHhh
Q psy15335 85 ----MNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 85 ----~dIl~aValGVDmFDcv~Ptr~A 107 (552)
..+-.+.++|+|.+....|+.+.
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~ 91 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSL 91 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHH
Confidence 45667889999999987776443
No 43
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=84.77 E-value=3.1 Score=42.16 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=66.4
Q ss_pred ceEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCC-CCcEeecCCC----C
Q psy15335 10 CVIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN-DKLRIIQGPW----S 83 (552)
Q Consensus 10 ~LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~-dKPRyLmGvG----~ 83 (552)
..|++..++ ..++.-.+-++++.+.|.+.+.|.-. ...+.++++.+++..+.+.+|. +.|..+++-= .
T Consensus 130 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT------~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA 203 (268)
T cd07940 130 VEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT------VGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLA 203 (268)
T ss_pred EEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC------CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchH
Confidence 345555555 55677788899999999999988733 3346789999999999998874 4675554332 2
Q ss_pred HHHHHHHHHcCCccccChhHH
Q psy15335 84 PMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 84 P~dIl~aValGVDmFDcv~Pt 104 (552)
....+.|++.|+|.||++..=
T Consensus 204 ~An~laAi~aG~~~iD~s~~G 224 (268)
T cd07940 204 VANSLAAVEAGARQVECTING 224 (268)
T ss_pred HHHHHHHHHhCCCEEEEEeec
Confidence 567889999999999998743
No 44
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=83.49 E-value=3.9 Score=41.90 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=63.0
Q ss_pred cCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC---C-CHHHHHHHHH
Q psy15335 17 GGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP---W-SPMNIVQFVQ 92 (552)
Q Consensus 17 GG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv---G-~P~dIl~aVa 92 (552)
+...++.-.+-++++.+.|.+.+.|.-. ...+.++++.+++..+++.+| .|..+++- | .....+.|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT------~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~ 215 (275)
T cd07937 144 PVHTLEYYVKLAKELEDMGADSICIKDM------AGLLTPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAE 215 (275)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCC------CCCCCHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHH
Confidence 4467788888999999999999988733 334678999999999999987 66666331 2 3567888999
Q ss_pred cCCccccChhHHH
Q psy15335 93 RGIDMFDSGLPLV 105 (552)
Q Consensus 93 lGVDmFDcv~Ptr 105 (552)
.|+|.||++..=.
T Consensus 216 aGa~~vd~sv~Gl 228 (275)
T cd07937 216 AGVDIVDTAISPL 228 (275)
T ss_pred hCCCEEEEecccc
Confidence 9999999987443
No 45
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=83.34 E-value=3.1 Score=41.91 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=63.2
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHH--HHH----H
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPM--NIV----Q 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~--dIl----~ 89 (552)
.|..+.+-=++-++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++......|.+ .|+|.+. +.+ .
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gst--GE~-~~ls~~Er~~l~~~~~~~~~~~~~vi-~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTT--GEA-PTLTDEERKEVIEAVVEAVAGRVPVI-AGVGANSTREAIELARH 87 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC--ccc-ccCCHHHHHHHHHHHHHHhCCCCeEE-EecCCccHHHHHHHHHH
Confidence 467888888889999999999999999976 454 34578999999999999887666654 8888632 222 4
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
+.+.|+|-+=...|.
T Consensus 88 a~~~Gad~v~v~pP~ 102 (281)
T cd00408 88 AEEAGADGVLVVPPY 102 (281)
T ss_pred HHHcCCCEEEECCCc
Confidence 556688855444443
No 46
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.30 E-value=4 Score=41.14 Aligned_cols=84 Identities=10% Similarity=-0.034 Sum_probs=64.0
Q ss_pred eEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-----cCCCCH
Q psy15335 11 VIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-----QGPWSP 84 (552)
Q Consensus 11 LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-----mGvG~P 84 (552)
.|++...+ ..++.-.+-++++.+.|.+.+.|.-. ...+.++++.+++..+++.+| .|.-+ +|.+ .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT------~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hn~~Gla-~ 197 (259)
T cd07939 127 SVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT------VGILDPFTTYELIRRLRAATD--LPLEFHAHNDLGLA-T 197 (259)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC------CCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChH-H
Confidence 45555554 66788888888899999999888633 334678999999999999887 45554 3444 4
Q ss_pred HHHHHHHHcCCccccChhH
Q psy15335 85 MNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~P 103 (552)
...+.|+..|+|.||++..
T Consensus 198 An~laAi~aG~~~vd~s~~ 216 (259)
T cd07939 198 ANTLAAVRAGATHVSVTVN 216 (259)
T ss_pred HHHHHHHHhCCCEEEEecc
Confidence 7888999999999999864
No 47
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=83.21 E-value=5.9 Score=42.04 Aligned_cols=85 Identities=15% Similarity=0.015 Sum_probs=67.4
Q ss_pred cCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC----CCHHHHHHHHH
Q psy15335 17 GGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP----WSPMNIVQFVQ 92 (552)
Q Consensus 17 GG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv----G~P~dIl~aVa 92 (552)
+...++.-.+-++.+.+.|.+.+.|- .+...|.++++.+++..+++.++++.|.-+++- -.....+.|++
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~------DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~ 212 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVV------DSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVE 212 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeC------CCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHH
Confidence 34567777888888999999988875 333457899999999999999988888877654 23678899999
Q ss_pred cCCccccChhHHHhh
Q psy15335 93 RGIDMFDSGLPLVLA 107 (552)
Q Consensus 93 lGVDmFDcv~Ptr~A 107 (552)
.|+|.+|++..=.=+
T Consensus 213 aGa~~iD~Sl~GlG~ 227 (337)
T PRK08195 213 AGATRIDGSLAGLGA 227 (337)
T ss_pred hCCCEEEecChhhcc
Confidence 999999998765444
No 48
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=82.92 E-value=3.2 Score=42.80 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=64.7
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHH----HH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNI----VQ 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dI----l~ 89 (552)
.|..+.+.=++-++.+.+.|++|+.+.|..+ |- ..|+.+|..++++.+++......|. +.|+|. ..+. -.
T Consensus 15 dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstG--E~-~~Ls~~Er~~l~~~~~~~~~g~~pv-i~gv~~~~t~~ai~~a~~ 90 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIEGGSHAISVGGTSG--EP-GSLTLEERKQAIENAIDQIAGRIPF-APGTGALNHDETLELTKF 90 (294)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCc--cc-ccCCHHHHHHHHHHHHHHhCCCCcE-EEECCcchHHHHHHHHHH
Confidence 4778888888899999999999999999774 53 4568999999999999888766665 488884 3333 34
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|.+.|+|-+=...|+
T Consensus 91 A~~~Gad~v~v~pP~ 105 (294)
T TIGR02313 91 AEEAGADAAMVIVPY 105 (294)
T ss_pred HHHcCCCEEEEcCcc
Confidence 566788876555554
No 49
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=82.73 E-value=4 Score=41.62 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=65.5
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHHH----
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIVQ---- 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl~---- 89 (552)
+|..+.+.=++-++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++..+...|.+ .|+|. ..+.++
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~--GE~-~~ls~~Er~~~~~~~~~~~~~~~~vi-~gv~~~~~~~~i~~a~~ 91 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTT--GES-PTLTHEEHEELIRAVVEAVNGRVPVI-AGTGSNSTAEAIELTKF 91 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcC--Ccc-ccCCHHHHHHHHHHHHHHhCCCCcEE-eecCCchHHHHHHHHHH
Confidence 577888888899999999999999998877 353 44689999999999999988777855 88885 444443
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
+.++|+|-+=...|+
T Consensus 92 a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 92 AEKAGADGALVVTPY 106 (292)
T ss_pred HHHcCCCEEEECCCc
Confidence 456788866555554
No 50
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.67 E-value=3.9 Score=45.60 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcCC
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRGI 95 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValGV 95 (552)
..+.-.+-++++.++|.+.+.|.-.. ..+.++++.++|..+.+.. +.|.++++-- .....+.|++.|+
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDta------G~l~P~~v~~Lv~alk~~~--~~pi~~H~Hnt~GlA~An~laAieAGa 232 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMA------GILTPKAAKELVSGIKAMT--NLPLIVHTHATSGISQMTYLAAVEAGA 232 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCC------CCcCHHHHHHHHHHHHhcc--CCeEEEEeCCCCccHHHHHHHHHHcCC
Confidence 45667888999999999999987433 3467899999999998743 6888886543 3688999999999
Q ss_pred ccccChhH
Q psy15335 96 DMFDSGLP 103 (552)
Q Consensus 96 DmFDcv~P 103 (552)
|.||++..
T Consensus 233 d~vD~ai~ 240 (468)
T PRK12581 233 DRIDTALS 240 (468)
T ss_pred CEEEeecc
Confidence 99999884
No 51
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=81.93 E-value=3.7 Score=46.86 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC----CCHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP----WSPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv----G~P~dIl~aValG 94 (552)
...+.-.+.++++.++|.+.++|--.. ..+.++++.+++..+++.++ .|.+++.- -.....+.|++.|
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~------G~~~P~~~~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAv~aG 222 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMA------GLLTPYAAYELVKALKEEVD--LPVQLHSHCTSGLAPMTYLKAVEAG 222 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcC------CCcCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCcHHHHHHHHHHhC
Confidence 356888899999999999999987444 24578999999999998885 78887543 2377899999999
Q ss_pred CccccChhH
Q psy15335 95 IDMFDSGLP 103 (552)
Q Consensus 95 VDmFDcv~P 103 (552)
+|+||++..
T Consensus 223 ad~vD~ai~ 231 (592)
T PRK09282 223 VDIIDTAIS 231 (592)
T ss_pred CCEEEeecc
Confidence 999999886
No 52
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=81.59 E-value=4.8 Score=41.62 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
..++.-.+.++++.++|.+.+.|.-.. ..+.+.++.+++..+++.+| +.|..++.-= -....+.|+..|
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~------G~~~P~~v~~l~~~l~~~~~-~~~i~~H~Hnd~Gla~AN~laA~~aG 216 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTL------GILSPFETYTYISDMVKRYP-NLHFDFHAHNDYDLAVANVLAAVKAG 216 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCC------CCCCHHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 468888899999999999999887433 34578999999999988886 4566654321 267889999999
Q ss_pred CccccChh
Q psy15335 95 IDMFDSGL 102 (552)
Q Consensus 95 VDmFDcv~ 102 (552)
+|.||++.
T Consensus 217 a~~vd~s~ 224 (280)
T cd07945 217 IKGLHTTV 224 (280)
T ss_pred CCEEEEec
Confidence 99999876
No 53
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=81.29 E-value=4.7 Score=43.28 Aligned_cols=80 Identities=19% Similarity=0.110 Sum_probs=62.8
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC---C-CHHHHHHHH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP---W-SPMNIVQFV 91 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv---G-~P~dIl~aV 91 (552)
.|-..++.-.+-++++.++|.+-+.|.-.. ..+.+.++.+++..+++.+|. .|..+++- | .....+.|+
T Consensus 191 ~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~------G~a~P~~v~~lv~~l~~~~~~-~~i~~H~Hnd~GlA~AN~lAA~ 263 (347)
T PLN02746 191 EGPVPPSKVAYVAKELYDMGCYEISLGDTI------GVGTPGTVVPMLEAVMAVVPV-DKLAVHFHDTYGQALANILVSL 263 (347)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecCCc------CCcCHHHHHHHHHHHHHhCCC-CeEEEEECCCCChHHHHHHHHH
Confidence 455788999999999999999999987433 345789999999999988863 34554332 1 267899999
Q ss_pred HcCCccccChh
Q psy15335 92 QRGIDMFDSGL 102 (552)
Q Consensus 92 alGVDmFDcv~ 102 (552)
+.|+|.||++.
T Consensus 264 ~aGa~~vd~sv 274 (347)
T PLN02746 264 QMGISTVDSSV 274 (347)
T ss_pred HhCCCEEEEec
Confidence 99999999975
No 54
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=81.27 E-value=3.8 Score=42.16 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=61.8
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHH---
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQ--- 92 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aVa--- 92 (552)
.|..+.+-=++=++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++......|.+ .|+|. .+-++++
T Consensus 20 dg~iD~~~l~~li~~l~~~Gv~gi~v~Gst--GE~-~~Lt~eEr~~v~~~~~~~~~g~~pvi-~gv~~--~t~~ai~~a~ 93 (296)
T TIGR03249 20 DGSFDEAAYRENIEWLLGYGLEALFAAGGT--GEF-FSLTPAEYEQVVEIAVSTAKGKVPVY-TGVGG--NTSDAIEIAR 93 (296)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEECCCC--cCc-ccCCHHHHHHHHHHHHHHhCCCCcEE-EecCc--cHHHHHHHHH
Confidence 478888888888999999999999999877 454 45689999999999999988777755 88885 2444443
Q ss_pred ----cCCccccChhH
Q psy15335 93 ----RGIDMFDSGLP 103 (552)
Q Consensus 93 ----lGVDmFDcv~P 103 (552)
.|+|-+=...|
T Consensus 94 ~a~~~Gadav~~~pP 108 (296)
T TIGR03249 94 LAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHhCCCEEEECCC
Confidence 67764433333
No 55
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=81.18 E-value=4.4 Score=41.32 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=65.0
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHHH----
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIVQ---- 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl~---- 89 (552)
+|..+.+.=++-++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++......|. +.|++. ..+.++
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst--GE~-~~Ls~~Er~~~~~~~~~~~~~~~~v-i~gv~~~s~~~~i~~a~~ 88 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTT--GES-PTLSHEEHKKVIEFVVDLVNGRVPV-IAGTGSNATEEAISLTKF 88 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccC--ccc-ccCCHHHHHHHHHHHHHHhCCCCeE-EEeCCCccHHHHHHHHHH
Confidence 578889988899999999999999998866 454 4568999999999999888766664 488885 445444
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|...|+|-+=...|+
T Consensus 89 a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 89 AEDVGADGFLVVTPY 103 (285)
T ss_pred HHHcCCCEEEEcCCc
Confidence 445688866555554
No 56
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=80.32 E-value=4.4 Score=46.25 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcCC
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRGI 95 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValGV 95 (552)
..+.-.+-++++.++|.+.+.|--.. ..+.+.++.+++..+++.+| .|.+++.-- .....+.|++.|+
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~------G~~~P~~v~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMA------GILTPKAAYELVSALKKRFG--LPVHLHSHATTGMAEMALLKAIEAGA 218 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC------CCcCHHHHHHHHHHHHHhCC--CceEEEecCCCCcHHHHHHHHHHhCC
Confidence 56888899999999999999987443 24578999999999998886 787775432 3678899999999
Q ss_pred ccccChhHHHhhc
Q psy15335 96 DMFDSGLPLVLAD 108 (552)
Q Consensus 96 DmFDcv~Ptr~AR 108 (552)
|+||++.--.-.+
T Consensus 219 ~~vd~ai~GlG~~ 231 (582)
T TIGR01108 219 DGIDTAISSMSGG 231 (582)
T ss_pred CEEEecccccccc
Confidence 9999987655443
No 57
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=77.50 E-value=7.8 Score=41.13 Aligned_cols=79 Identities=13% Similarity=0.036 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
..++.-.+-++.+.+.|.+.+.|- .+...|.++++.+++..++..++++.|.-+++-= .....+.|++.|
T Consensus 140 ~~~e~l~~~a~~~~~~Ga~~i~i~------DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 213 (333)
T TIGR03217 140 TPPEKLAEQAKLMESYGADCVYIV------DSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG 213 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEc------cCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC
Confidence 455666777777888888887765 3334578999999999999999988888775542 356788999999
Q ss_pred CccccChhH
Q psy15335 95 IDMFDSGLP 103 (552)
Q Consensus 95 VDmFDcv~P 103 (552)
+|.+|++..
T Consensus 214 a~~iD~Sl~ 222 (333)
T TIGR03217 214 ATRIDASLR 222 (333)
T ss_pred CCEEEeecc
Confidence 999998763
No 58
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=77.25 E-value=6.8 Score=48.10 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC---C-CHHHHHHHHHcCC
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP---W-SPMNIVQFVQRGI 95 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv---G-~P~dIl~aValGV 95 (552)
..+.-.+-|+++.++|.+-++|.-.. ..+.+.++.++|..+++.+ +.|.+++.- | .....+.|++.||
T Consensus 687 ~l~y~~~~ak~l~~~Gad~I~ikDt~------Gll~P~~~~~Lv~~lk~~~--~~pi~~H~Hdt~Gla~an~laA~eaGa 758 (1143)
T TIGR01235 687 DLKYYTNLAVELEKAGAHILGIKDMA------GLLKPAAAKLLIKALREKT--DLPIHFHTHDTSGIAVASMLAAVEAGV 758 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCc------CCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCCcHHHHHHHHHHhCC
Confidence 46777889999999999999997444 3567899999999999887 688888653 2 3678999999999
Q ss_pred ccccChhHHH
Q psy15335 96 DMFDSGLPLV 105 (552)
Q Consensus 96 DmFDcv~Ptr 105 (552)
|++|++.--.
T Consensus 759 d~vD~ai~gl 768 (1143)
T TIGR01235 759 DVVDVAVDSM 768 (1143)
T ss_pred CEEEecchhh
Confidence 9999998554
No 59
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=76.50 E-value=12 Score=33.60 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 27 CAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmF 98 (552)
.++.+.+.+.+.++|.++.. . ..+.+.++++.+.+..|++-+.++=|...++++..+.++|||-|
T Consensus 42 ~~~~a~~~~~d~V~iS~~~~--~-----~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 42 IVEAAIQEDVDVIGLSSLSG--G-----HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred HHHHHHHcCCCEEEEcccch--h-----hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Confidence 33444455556666554332 1 24567777887777766644444445556777999999999854
No 60
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=76.45 E-value=7.2 Score=40.40 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=53.3
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS 83 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~ 83 (552)
.|..+.+-=++=++.+.+.|++|+.+.|.. ||- ..|..+|..++++.+++......|.+ .|+|.
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~Gst--GE~-~~Lt~eEr~~~~~~~~~~~~~~~pvi-~gv~~ 85 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGT--GEF-FSLTPDEYSQVVRAAVETTAGRVPVI-AGAGG 85 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCC--cCc-ccCCHHHHHHHHHHHHHHhCCCCcEE-EecCC
Confidence 578888888888999999999999999876 453 44689999999999999988778866 68874
No 61
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=75.84 E-value=8.1 Score=39.85 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=63.0
Q ss_pred ccCCCHHHHHHHHHHHHcCC-cceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHHH---
Q psy15335 16 QGGLDLSLRRYCAELYATRD-VHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIVQ--- 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~-f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl~--- 89 (552)
.|..+.+-=++-++.+.+.| ++|+.+.|.. ||. ..|+.+|..++++.+++......|.+ .|+|+ ..+.++
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~Gst--GE~-~~Lt~eEr~~~~~~~~~~~~~~~pvi-~gv~~~~t~~~i~la~ 90 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGST--GEN-FMLSTEEKKEIFRIAKDEAKDQIALI-AQVGSVNLKEAVELGK 90 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcc--ccc-ccCCHHHHHHHHHHHHHHhCCCCcEE-EecCCCCHHHHHHHHH
Confidence 57788888888889998999 9999999977 454 34588999999999998887666654 78874 444443
Q ss_pred -HHHcCCccccChhHH
Q psy15335 90 -FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 -aValGVDmFDcv~Pt 104 (552)
+.+.|+|.+=...|+
T Consensus 91 ~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 91 YATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHhCCCEEEEeCCc
Confidence 456688766555554
No 62
>PRK12999 pyruvate carboxylase; Reviewed
Probab=75.73 E-value=6.2 Score=48.37 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
...+.-.+-++++.++|.+.+.|--.. ..+.++++.++|..+++.+ +.|.++++-- .....+.|++.|
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~------G~l~P~~~~~lv~~lk~~~--~ipi~~H~Hnt~Gla~an~laA~~aG 759 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMA------GLLKPAAAYELVSALKEEV--DLPIHLHTHDTSGNGLATYLAAAEAG 759 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcc------CCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCchHHHHHHHHHHhC
Confidence 577888899999999999999987443 3567999999999999888 5888886542 368899999999
Q ss_pred CccccChhHHHhhc
Q psy15335 95 IDMFDSGLPLVLAD 108 (552)
Q Consensus 95 VDmFDcv~Ptr~AR 108 (552)
+|.+|++..-.-.+
T Consensus 760 ad~vD~av~glg~~ 773 (1146)
T PRK12999 760 VDIVDVAVASMSGL 773 (1146)
T ss_pred CCEEEecchhhcCC
Confidence 99999998655443
No 63
>PHA01745 hypothetical protein
Probab=74.61 E-value=2.5 Score=44.39 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=50.1
Q ss_pred CcccccCCCcccc------cHHHHHHHHHhhccccCccccccC-CccchhhccCCCCceecccc---ccCCceeccCCce
Q psy15335 270 ADSSSINGKNELS------NTSDIYSSMESDIHQSTHQEALII-NTDDVASKSSEKDTLYTKSS---EISDSLYKPRQYE 339 (552)
Q Consensus 270 Fdg~AIGG~lek~------~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIfaValGvDtFDcv~p---Ar~Gr~lt~~G~~ 339 (552)
-|..|+||.++.. .-+.++..+++ ..++.|+||+ .|-.+-.. +|+|.-|++-+ |..|.++.|.|+.
T Consensus 126 ~d~iAfGG~Vp~s~~~sr~~a~~~y~~vRk---~~~~LHvLG~gSP~~~pil-~~vdS~DTsTwr~KAaygkVilpGgge 201 (306)
T PHA01745 126 TDYIAFGGIVASSKLKILIYAFPWYYYIRK---YVKRLHVLGMSAPYFRQVF-YDADSMDTSTYTVKAIHREIFWFDGTR 201 (306)
T ss_pred hhhhhccccccHHhhhhHHHHHHHHHHHHH---HhhhhhccccCCchheeee-eccccccchhhhhhhhcceEecCCCce
Confidence 4577899997543 11223344444 3457899999 99665222 79999999887 8899999999866
Q ss_pred EEecCC
Q psy15335 340 MWLQHP 345 (552)
Q Consensus 340 l~L~~~ 345 (552)
..+.+-
T Consensus 202 RhV~~R 207 (306)
T PHA01745 202 RYVGER 207 (306)
T ss_pred eecccc
Confidence 666653
No 64
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=74.02 E-value=9.4 Score=43.74 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
...+.-.+-++++.++|.+.+.|--.. ..+.++++.+++..+++.+ +.|.++++-- .....+.|++.|
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~------G~l~P~~~~~lv~~lk~~~--~~pi~~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKDMA------GLLKPYAAYELVSRIKKRV--DVPLHLHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC------CCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCchHHHHHHHHHHcC
Confidence 346778888999999999999987433 3467899999999999887 5888886542 367889999999
Q ss_pred CccccChhHHHhh
Q psy15335 95 IDMFDSGLPLVLA 107 (552)
Q Consensus 95 VDmFDcv~Ptr~A 107 (552)
+|.+|++..-.-.
T Consensus 224 a~~vD~ai~glG~ 236 (593)
T PRK14040 224 IDGVDTAISSMSM 236 (593)
T ss_pred CCEEEeccccccc
Confidence 9999998754443
No 65
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.87 E-value=8.4 Score=40.16 Aligned_cols=85 Identities=21% Similarity=0.179 Sum_probs=65.1
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCH--H----HHHH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSP--M----NIVQ 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P--~----dIl~ 89 (552)
+|..+.+-=++-++.+.+.|++|+.+.|.. ||... +..+|..++++.+++..-...| .+.|+|.. . .--.
T Consensus 19 dg~vD~~a~~~lv~~li~~Gv~gi~~~Gtt--GE~~~-Ls~eEr~~v~~~~v~~~~grvp-viaG~g~~~t~eai~lak~ 94 (299)
T COG0329 19 DGSVDEEALRRLVEFLIAAGVDGLVVLGTT--GESPT-LTLEERKEVLEAVVEAVGGRVP-VIAGVGSNSTAEAIELAKH 94 (299)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC--ccchh-cCHHHHHHHHHHHHHHHCCCCc-EEEecCCCcHHHHHHHHHH
Confidence 488999999999999999999999999977 46543 4789999999999998877777 55888876 2 2334
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|-+.|+|-+=.+-|+
T Consensus 95 a~~~Gad~il~v~Py 109 (299)
T COG0329 95 AEKLGADGILVVPPY 109 (299)
T ss_pred HHhcCCCEEEEeCCC
Confidence 556777755444443
No 66
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=73.11 E-value=9.6 Score=39.16 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=58.4
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC-HHHHH----HH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS-PMNIV----QF 90 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~-P~dIl----~a 90 (552)
+|..+.+--++=++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++......|.+ .|+|. ..+.+ .+
T Consensus 15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~Gst--GE~-~~Ls~eEr~~l~~~~~~~~~~~~pvi-~gv~~~t~~~i~~a~~a 90 (289)
T cd00951 15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGT--GEF-FSLTPDEYAQVVRAAVEETAGRVPVL-AGAGYGTATAIAYAQAA 90 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCC--cCc-ccCCHHHHHHHHHHHHHHhCCCCCEE-EecCCCHHHHHHHHHHH
Confidence 477888888888888889999999999876 454 44689999999999999988777866 56763 33322 23
Q ss_pred HHcCCccc
Q psy15335 91 VQRGIDMF 98 (552)
Q Consensus 91 ValGVDmF 98 (552)
.+.|+|-+
T Consensus 91 ~~~Gad~v 98 (289)
T cd00951 91 EKAGADGI 98 (289)
T ss_pred HHhCCCEE
Confidence 45566544
No 67
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=72.73 E-value=13 Score=38.02 Aligned_cols=81 Identities=9% Similarity=-0.040 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC----CCHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP----WSPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv----G~P~dIl~aValG 94 (552)
..++.-.+-++.+.+.|.+.+.|.-.. ..+.++++.+++..+++.+| +.|.-+++- -.....+.|+..|
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~l~DT~------G~~~P~~v~~lv~~l~~~~~-~~~l~~H~Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLVLCDTN------GGTLPHEIAEIVKEVRERLP-GVPLGIHAHNDSGLAVANSLAAVEAG 220 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCC------CCCCHHHHHHHHHHHHHhCC-CCeeEEEecCCCCcHHHHHHHHHHcC
Confidence 456777788888888999988876322 34578999999999999886 355554332 1356788899999
Q ss_pred CccccChhHHHh
Q psy15335 95 IDMFDSGLPLVL 106 (552)
Q Consensus 95 VDmFDcv~Ptr~ 106 (552)
+|.||++..=.=
T Consensus 221 a~~id~s~~GlG 232 (273)
T cd07941 221 ATQVQGTINGYG 232 (273)
T ss_pred CCEEEEeccccc
Confidence 999999875433
No 68
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=72.68 E-value=35 Score=35.78 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCCceEEee--------ccCCC--HHHHHHHHHHHHcCCcceEEEccccCCCCCccccC-hhHHHH---HHHHhccCCC
Q psy15335 6 LKDTCVIAPI--------QGGLD--LSLRRYCAELYATRDVHGFLIDGLCADEGATEDLG-CDVVNA---VLENTVPYLP 71 (552)
Q Consensus 6 Lk~q~LfGIV--------QGG~~--~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~-~eem~~---iL~~v~~~LP 71 (552)
+....++||+ -||.+ .+.-.+-|+++.+-|.+.+=|||-+. ....+..+ .+++.+ +|+.+.+.+
T Consensus 12 ~~~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeST-rPg~~~v~~eeE~~Rv~pvI~~l~~~~- 89 (282)
T PRK11613 12 LSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGEST-RPGAAEVSVEEELDRVIPVVEAIAQRF- 89 (282)
T ss_pred CCCceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC-
Confidence 3456689998 78865 45555556667788999999998774 22222222 456444 555555433
Q ss_pred CCCcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 72 NDKLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 72 ~dKPRyLmGvG~P~dIl~aValGVDmF 98 (552)
+.|. -.=-.+|..+-.|++.|+|++
T Consensus 90 -~~~I-SIDT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 90 -EVWI-SVDTSKPEVIRESAKAGAHII 114 (282)
T ss_pred -CCeE-EEECCCHHHHHHHHHcCCCEE
Confidence 4554 356689999999999999999
No 69
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=72.49 E-value=13 Score=38.03 Aligned_cols=85 Identities=12% Similarity=-0.070 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeec-----CCCCHHHHHHHHHc
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQ-----GPWSPMNIVQFVQR 93 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLm-----GvG~P~dIl~aVal 93 (552)
...+.-.+.++.+.+.|.+.+.|.-.. ..+.++++.+++..+.+.+| .|..++ |.+ -...+.|+..
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~------G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn~~Gla-~an~~~a~~a 208 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTV------GIATPRQVYELVRTLRGVVS--CDIEFHGHNDTGCA-IANAYAALEA 208 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcC------CCCCHHHHHHHHHHHHHhcC--CeEEEEECCCCChH-HHHHHHHHHh
Confidence 445666778888888999988886433 34578999999999998887 665553 444 5678889999
Q ss_pred CCccccChhHHHhhccCeE
Q psy15335 94 GIDMFDSGLPLVLADRGCA 112 (552)
Q Consensus 94 GVDmFDcv~Ptr~AR~G~a 112 (552)
|+|+||++..=.=.|-|.+
T Consensus 209 G~~~vd~s~~GlGeraGn~ 227 (262)
T cd07948 209 GATHIDTTVLGIGERNGIT 227 (262)
T ss_pred CCCEEEEeccccccccCCc
Confidence 9999999875444444433
No 70
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=70.83 E-value=11 Score=38.70 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=60.1
Q ss_pred cCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC--HHHHH----HH
Q psy15335 17 GGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS--PMNIV----QF 90 (552)
Q Consensus 17 GG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~--P~dIl----~a 90 (552)
|..+.+.=++-++.+.+.|++|+.+.|.. ||- ..|+.+|..++++.+++.. ++ .+.|+|. +.+.+ .|
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~Gst--GE~-~~Lt~eEr~~l~~~~~~~~--~~--vi~gvg~~~~~~ai~~a~~a 87 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTT--GLG-PSLSFQEKLELLKAYSDIT--DK--VIFQVGSLNLEESIELARAA 87 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccC--CCc-ccCCHHHHHHHHHHHHHHc--CC--EEEEeCcCCHHHHHHHHHHH
Confidence 77888888888999999999999999877 453 4568999999999888765 22 5788884 44433 45
Q ss_pred HHcCCccccChhHH
Q psy15335 91 VQRGIDMFDSGLPL 104 (552)
Q Consensus 91 ValGVDmFDcv~Pt 104 (552)
...|+|-+=...|+
T Consensus 88 ~~~Gad~v~v~~P~ 101 (279)
T cd00953 88 KSFGIYAIASLPPY 101 (279)
T ss_pred HHcCCCEEEEeCCc
Confidence 56888865555554
No 71
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=70.32 E-value=15 Score=38.07 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=39.1
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCc-------cccC
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGID-------MFDS 100 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVD-------mFDc 100 (552)
++|.+.|..-+.--|-. .|......+++-+..+++.+ +-|..+ -|+|+|.+..++.++|+| ++.+
T Consensus 138 krL~d~GcaavMPlgsP-IGSg~Gi~n~~~l~~i~~~~------~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 138 KRLEDAGCAAVMPLGSP-IGSGRGIQNPYNLRIIIERA------DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp HHHHHTT-SEBEEBSSS-TTT---SSTHHHHHHHHHHG------SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred HHHHHCCCCEEEecccc-cccCcCCCCHHHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 34444444444444433 24333344555555555544 667777 899999999999999999 4444
Q ss_pred hhHHHhh
Q psy15335 101 GLPLVLA 107 (552)
Q Consensus 101 v~Ptr~A 107 (552)
--|.+.|
T Consensus 211 ~dPv~MA 217 (247)
T PF05690_consen 211 KDPVAMA 217 (247)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 4455544
No 72
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=67.98 E-value=2 Score=48.16 Aligned_cols=66 Identities=6% Similarity=-0.110 Sum_probs=47.8
Q ss_pred CcccccCCCc---ccccHHHHHHHHHhhccccCccccccC-Cccchh-hccCCCCceecccc---ccCCceeccCC
Q psy15335 270 ADSSSINGKN---ELSNTSDIYSSMESDIHQSTHQEALII-NTDDVA-SKSSEKDTLYTKSS---EISDSLYKPRQ 337 (552)
Q Consensus 270 Fdg~AIGG~l---ek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dIf-aValGvDtFDcv~p---Ar~Gr~lt~~G 337 (552)
|.-..||... .++.+..+.-..+...| ++.++-|+ .|.-|- .|.+|+|.||.+.. |-.|.+||+.|
T Consensus 66 ~~~i~~g~~~v~~~~~~~~~~~v~~r~~~p--~~~~~s~~~~P~~iplLvYlGvD~fD~~~~~i~~~~g~~ft~~~ 139 (519)
T COG1549 66 LVEIPIGALLVRSPDDVFVITDVILRYRFP--KALYASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTPFG 139 (519)
T ss_pred eeeecccceeeecCcceeeeehhhhhccCC--CceeecCCCChhhhhhHHhhCcchhhhHHHHHHHhcCccccccc
Confidence 4444566654 33333333334445555 99999999 999994 89999999998775 88999999997
No 73
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.63 E-value=17 Score=37.88 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
++..+.|++...+.. |+.+++.+++......- +....-.-|==+|..+.+..+.|||.+-..+++..+
T Consensus 196 ~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~-~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa 263 (273)
T PRK05848 196 KNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANY-PHVLLEASGNITLENINAYAKSGVDAISSGSLIHQA 263 (273)
T ss_pred HHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 344568899888763 46788888887643222 233355565449999999999999999999988754
No 74
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.20 E-value=32 Score=38.69 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
+++.+.|.-.|=. .+- .+-+++|.+.+++-++|..-+ |. ...++++|+++++..| +.+...=+|.++++
T Consensus 234 ~~~l~vgaavg~~-~~~-~~r~~~l~~ag~d~i~iD~~~--g~------~~~~~~~i~~ik~~~p-~~~vi~g~v~t~e~ 302 (505)
T PLN02274 234 DGKLLVGAAIGTR-ESD-KERLEHLVKAGVDVVVLDSSQ--GD------SIYQLEMIKYIKKTYP-ELDVIGGNVVTMYQ 302 (505)
T ss_pred CCCEEEEEEEcCC-ccH-HHHHHHHHHcCCCEEEEeCCC--CC------cHHHHHHHHHHHHhCC-CCcEEEecCCCHHH
Confidence 5677788777742 222 345667788899999999644 33 4456788999988876 45544346999999
Q ss_pred HHHHHHcCCccc
Q psy15335 87 IVQFVQRGIDMF 98 (552)
Q Consensus 87 Il~aValGVDmF 98 (552)
...|+++|+|.+
T Consensus 303 a~~a~~aGaD~i 314 (505)
T PLN02274 303 AQNLIQAGVDGL 314 (505)
T ss_pred HHHHHHcCcCEE
Confidence 999999999975
No 75
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=63.40 E-value=12 Score=36.33 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=50.1
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
++++.+.+++++.+.- |+++++.++++.+ ..+++.-..-+-|--++..|.+....|||.|...+.+..|
T Consensus 93 ~~ea~~~g~d~I~lD~----------~~~~~~~~~v~~l-~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 93 AEEALEAGADIIMLDN----------MSPEDLKEAVEEL-RELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp HHHHHHTT-SEEEEES-----------CHHHHHHHHHHH-HHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHHSB
T ss_pred HHHHHHhCCCEEEecC----------cCHHHHHHHHHHH-hhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhcCC
Confidence 4445567888888872 4578888888877 3444445555578779999999999999999988877665
Q ss_pred c
Q psy15335 108 D 108 (552)
Q Consensus 108 R 108 (552)
+
T Consensus 162 ~ 162 (169)
T PF01729_consen 162 P 162 (169)
T ss_dssp E
T ss_pred c
Confidence 3
No 76
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=63.32 E-value=22 Score=34.59 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=47.1
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
+.+.+.+.+++.+.|....|... ..+ ....+++..+++.+ +.|..+ .|+.+|.++.+++..|.|.++.......+
T Consensus 116 ~~~~~~gad~i~~~~~~~~G~~~-~~~-~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 116 RKAEAAGADALVAQGAEAGGHRG-TFD-IGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred HHHHHcCCCEEEEeCcCCCCCCC-ccc-cCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 33455678888775543322111 100 12245555555444 578777 77778899999999999999887765444
Q ss_pred c
Q psy15335 108 D 108 (552)
Q Consensus 108 R 108 (552)
.
T Consensus 192 ~ 192 (236)
T cd04730 192 E 192 (236)
T ss_pred c
Confidence 3
No 77
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.70 E-value=35 Score=37.63 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
+++.+.|+-.|= ..+ -.+-++.|.+.+++-++|..-+. +.+.+.++|.++....|. .+..+-++.++.+
T Consensus 139 ~~~l~v~aavg~-~~~-~~~~v~~lv~aGvDvI~iD~a~g--------~~~~~~~~v~~ik~~~p~-~~vi~g~V~T~e~ 207 (404)
T PRK06843 139 NNKLRVGAAVSI-DID-TIERVEELVKAHVDILVIDSAHG--------HSTRIIELVKKIKTKYPN-LDLIAGNIVTKEA 207 (404)
T ss_pred hcCeEEEEEEeC-CHH-HHHHHHHHHhcCCCEEEEECCCC--------CChhHHHHHHHHHhhCCC-CcEEEEecCCHHH
Confidence 445566666653 444 44567778889999999986553 245578889999888864 5655558999999
Q ss_pred HHHHHHcCCcccc
Q psy15335 87 IVQFVQRGIDMFD 99 (552)
Q Consensus 87 Il~aValGVDmFD 99 (552)
...++.+|+|.+.
T Consensus 208 a~~l~~aGaD~I~ 220 (404)
T PRK06843 208 ALDLISVGADCLK 220 (404)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999876
No 78
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.66 E-value=48 Score=34.01 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=56.1
Q ss_pred CceEEeeccCCCHHHHHHHHHHHHcCC-cceEEEccccCC----CCCccccChhHHHHHHHHhccCCCCCCcEee-cCCC
Q psy15335 9 TCVIAPIQGGLDLSLRRYCAELYATRD-VHGFLIDGLCAD----EGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPW 82 (552)
Q Consensus 9 q~LfGIVQGG~~~DLR~~SA~eL~~l~-f~GyaIGGl~v~----GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG 82 (552)
..+++-| +|...+.=.++|+.+.+.| ++++=|=-.+++ |... .-+.+.+.++|+++++.. +.|..+ ++..
T Consensus 92 ~p~i~si-~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~-~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~ 167 (301)
T PRK07259 92 TPIIANV-AGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAF-GTDPELAYEVVKAVKEVV--KVPVIVKLTPN 167 (301)
T ss_pred CcEEEEe-ccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcccc-ccCHHHHHHHHHHHHHhc--CCCEEEEcCCC
Confidence 3344444 5557777788999999998 999977211111 1111 114678899999998877 788776 5533
Q ss_pred --CHHHHH-HHHHcCCccccC
Q psy15335 83 --SPMNIV-QFVQRGIDMFDS 100 (552)
Q Consensus 83 --~P~dIl-~aValGVDmFDc 100 (552)
...+++ .+.+.|+|.++.
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEE
Confidence 333444 356788887754
No 79
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.05 E-value=26 Score=36.99 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=50.7
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
+.+.+.+...+. .|+.+++.+.+...... .+....-.-|-=+|..|.+..+.|||.|.+.++|..|
T Consensus 215 al~~gaDiI~LD----------nm~~e~vk~av~~~~~~-~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 215 VLAEGAELVLLD----------NFPVWQTQEAVQRRDAR-APTVLLESSGGLTLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred HHHcCCCEEEeC----------CCCHHHHHHHHHHHhcc-CCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 345788888876 25678888888754333 4455566678779999999999999999999988755
No 80
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=60.97 E-value=38 Score=36.27 Aligned_cols=85 Identities=8% Similarity=-0.010 Sum_probs=62.3
Q ss_pred eEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeec-----CCCCH
Q psy15335 11 VIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQ-----GPWSP 84 (552)
Q Consensus 11 LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLm-----GvG~P 84 (552)
-|++...+ ..++.-.+.++.+.+.|.+.+.|.-.. ..+.++++.+++..+.+.+| .|.-++ |.+ .
T Consensus 129 ~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~------G~~~P~~v~~li~~l~~~~~--~~l~~H~Hnd~GlA-~ 199 (363)
T TIGR02090 129 EFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV------GVLTPQKMEELIKKLKENVK--LPISVHCHNDFGLA-T 199 (363)
T ss_pred EEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC------CccCHHHHHHHHHHHhcccC--ceEEEEecCCCChH-H
Confidence 34443333 567777888899999999998876333 34578999999999998886 555443 333 4
Q ss_pred HHHHHHHHcCCccccChhHH
Q psy15335 85 MNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~Pt 104 (552)
...+.|+..|+|.||++..=
T Consensus 200 AN~laA~~aGa~~vd~s~~G 219 (363)
T TIGR02090 200 ANSIAGVKAGAEQVHVTVNG 219 (363)
T ss_pred HHHHHHHHCCCCEEEEEeec
Confidence 68889999999999998643
No 81
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=60.63 E-value=20 Score=34.83 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCcccc
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFD 99 (552)
++++.+.+++.+++++... . .+ ..+ .+.+..+.+.+|.+.|... .|+.+|+++..+.++|+|-+=
T Consensus 134 ~~~~~~~g~~~i~~t~~~~--~---~~-~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvi 199 (217)
T cd00331 134 LERALALGAKIIGINNRDL--K---TF-EVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVL 199 (217)
T ss_pred HHHHHHcCCCEEEEeCCCc--c---cc-CcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEE
Confidence 4455667888888875332 1 11 111 2556667777777888884 899999999999999999553
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=59.99 E-value=44 Score=37.52 Aligned_cols=83 Identities=8% Similarity=-0.007 Sum_probs=60.8
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
+++.++|+..|=...+ .+-++.|.+.|++-+.|.-.+ |. .....++|+++++..| +.|...=.+.++++
T Consensus 227 ~GrL~Vgaavg~~~~~--~~~~~~l~~ag~d~i~id~a~--G~------s~~~~~~i~~ik~~~~-~~~v~aG~V~t~~~ 295 (495)
T PTZ00314 227 NGQLLVGAAISTRPED--IERAAALIEAGVDVLVVDSSQ--GN------SIYQIDMIKKLKSNYP-HVDIIAGNVVTADQ 295 (495)
T ss_pred CCCEEEEEEECCCHHH--HHHHHHHHHCCCCEEEEecCC--CC------chHHHHHHHHHHhhCC-CceEEECCcCCHHH
Confidence 4567888888864433 455666888899999998544 22 2334678888888776 56665556889999
Q ss_pred HHHHHHcCCccccC
Q psy15335 87 IVQFVQRGIDMFDS 100 (552)
Q Consensus 87 Il~aValGVDmFDc 100 (552)
...++++|+|.+..
T Consensus 296 a~~~~~aGad~I~v 309 (495)
T PTZ00314 296 AKNLIDAGADGLRI 309 (495)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999997753
No 83
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=59.57 E-value=25 Score=37.63 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=48.3
Q ss_pred HHHHHHHcCCc--ceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHHHcCCccccC
Q psy15335 26 YCAELYATRDV--HGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFVQRGIDMFDS 100 (552)
Q Consensus 26 ~SA~eL~~l~f--~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aValGVDmFDc 100 (552)
+-+++|.+.++ +.++|.--++ ..+.+.++|.++++..| +.|. +.| ++++++...+..+|+|.++.
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g--------h~~~~~e~I~~ir~~~p-~~~v-i~g~V~t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG--------HSDSVINMIQHIKKHLP-ETFV-IAGNVGTPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC--------chHHHHHHHHHHHhhCC-CCeE-EEEecCCHHHHHHHHHcCcCEEEE
Confidence 44555666644 9999985553 35667888998888775 4564 465 99999999999999999553
No 84
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.42 E-value=30 Score=36.20 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=50.5
Q ss_pred HHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 30 LYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 30 eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+..+.+.+++.++- |..+++.++++.+ ++..|....|-=++..+.+..+.|||.+-..++|..++
T Consensus 204 eA~~~gaD~I~LD~----------~~~e~l~~~v~~~----~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 204 QALAAGADIVMLDE----------LSLDDMREAVRLT----AGRAKLEASGGINESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred HHHHcCCCEEEECC----------CCHHHHHHHHHHh----CCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 34456788887752 3567777777654 35778999986799999999999999999999887764
No 85
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.02 E-value=38 Score=36.00 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=54.0
Q ss_pred eccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHHHc
Q psy15335 15 IQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFVQR 93 (552)
Q Consensus 15 VQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aVal 93 (552)
+.||...+.=.+-++.|.+.+++.+.|.+-.. ... .........+.+..+.+.+..+.|....| +.+|+++-++++.
T Consensus 228 ~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~-~~~-~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~ 305 (353)
T cd04735 228 EEPGIRMEDTLALVDKLADKGLDYLHISLWDF-DRK-SRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET 305 (353)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc-ccc-cccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 46787777777888889999999999875321 111 11011112334444444444568888764 4589999999999
Q ss_pred CCcccc
Q psy15335 94 GIDMFD 99 (552)
Q Consensus 94 GVDmFD 99 (552)
|+|++=
T Consensus 306 gaD~V~ 311 (353)
T cd04735 306 GADLVA 311 (353)
T ss_pred CCChHH
Confidence 988643
No 86
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.53 E-value=59 Score=33.17 Aligned_cols=89 Identities=19% Similarity=0.145 Sum_probs=55.9
Q ss_pred CceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCC--ccc-cChhHHHHHHHHhccCCCCCCcEee-cCCC--
Q psy15335 9 TCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGA--TED-LGCDVVNAVLENTVPYLPNDKLRII-QGPW-- 82 (552)
Q Consensus 9 q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~--~~~-m~~eem~~iL~~v~~~LP~dKPRyL-mGvG-- 82 (552)
..++.-| +|...+.=.++|+.+.+.+++++-|=-.+++... ... -+.+.+.++|+++++.+ +.|..+ ++..
T Consensus 90 ~p~ivsi-~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~~~~~ 166 (296)
T cd04740 90 TPVIASI-AGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLTPNVT 166 (296)
T ss_pred CcEEEEE-ecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeCCCch
Confidence 3344444 4556777788999999999999987322221100 001 14677889999998877 688776 5433
Q ss_pred CHHHHHH-HHHcCCccccC
Q psy15335 83 SPMNIVQ-FVQRGIDMFDS 100 (552)
Q Consensus 83 ~P~dIl~-aValGVDmFDc 100 (552)
...+++. +.+.|+|.++.
T Consensus 167 ~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 167 DIVEIARAAEEAGADGLTL 185 (296)
T ss_pred hHHHHHHHHHHcCCCEEEE
Confidence 2445454 66789886643
No 87
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.10 E-value=19 Score=37.24 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=48.1
Q ss_pred HHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 30 LYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 30 eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
++.+.+.+.+.+|-+ ..+++.++++. ++...|....|-=++..+.+..+.|+|.+-..++|..+
T Consensus 197 ~A~~~gaDyI~ld~~----------~~e~l~~~~~~----~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 197 EALEAGADIIMLDNM----------SPEELREAVAL----LKGRVLLEASGGITLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred HHHHcCCCEEEECCc----------CHHHHHHHHHH----cCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecCC
Confidence 344678899998833 34555555543 44477889898779999999999999999998877644
No 88
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=56.63 E-value=17 Score=39.69 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=60.8
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHH
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQF 90 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~a 90 (552)
.-+|..|. +..+-|+.+.+.|++|+.++|-. |-..... .. -.++|.++.+.+..+.|.++ =||-++.||+.|
T Consensus 246 ~pvivKgV---~s~~dA~~a~~~Gvd~I~Vs~hG--Gr~~d~~-~~-t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KA 318 (381)
T PRK11197 246 GPMVIKGI---LDPEDARDAVRFGADGIVVSNHG--GRQLDGV-LS-SARALPAIADAVKGDITILADSGIRNGLDVVRM 318 (381)
T ss_pred CCEEEEec---CCHHHHHHHHhCCCCEEEECCCC--CCCCCCc-cc-HHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHH
Confidence 34555665 66778888899999999999743 2211110 11 12334444444445678887 467799999999
Q ss_pred HHcCCccccChhHHHhh
Q psy15335 91 VQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 91 ValGVDmFDcv~Ptr~A 107 (552)
.++|.|..=..-|..++
T Consensus 319 LaLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 319 IALGADTVLLGRAFVYA 335 (381)
T ss_pred HHcCcCceeEhHHHHHH
Confidence 99999998888888776
No 89
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=55.85 E-value=34 Score=36.97 Aligned_cols=86 Identities=15% Similarity=-0.041 Sum_probs=66.1
Q ss_pred CCceEEee--ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCC---CCCcEeecCC-
Q psy15335 8 DTCVIAPI--QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLP---NDKLRIIQGP- 81 (552)
Q Consensus 8 ~q~LfGIV--QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP---~dKPRyLmGv- 81 (552)
+..+..|+ ++|.+.+.=.+-+.++.+-|++++...|... |. ..+..++..+++..+++... -.++.|+.++
T Consensus 130 rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~g--e~-~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit 206 (367)
T cd08205 130 RPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLA--DQ-PYAPFEERVRACMEAVRRANEETGRKTLYAPNIT 206 (367)
T ss_pred CCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeecccccc--Cc-ccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC
Confidence 33444445 4899999999999999999999998887663 43 34678999999999998887 3677888888
Q ss_pred CCHHHHHH----HHHcCCc
Q psy15335 82 WSPMNIVQ----FVQRGID 96 (552)
Q Consensus 82 G~P~dIl~----aValGVD 96 (552)
+...++++ +.++|.|
T Consensus 207 ~~~~e~i~~a~~a~~~Gad 225 (367)
T cd08205 207 GDPDELRRRADRAVEAGAN 225 (367)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 56677754 5678888
No 90
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.66 E-value=34 Score=35.91 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=49.9
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+.+.+.+.+.+. .|+.+++.+.+..+ +...|.-.-|-=++..|....+.|||.+...++|..|+
T Consensus 210 a~~~gaDiI~LD----------n~s~e~l~~av~~~----~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galthsa~ 273 (281)
T PRK06106 210 ALELGVDAVLLD----------NMTPDTLREAVAIV----AGRAITEASGRITPETAPAIAASGVDLISVGWLTHSAP 273 (281)
T ss_pred HHHcCCCEEEeC----------CCCHHHHHHHHHHh----CCCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 345778888876 25567788887754 34456777887899999999999999999999887653
No 91
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=54.46 E-value=99 Score=31.33 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=57.0
Q ss_pred ceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCC--ccccChhHHHHHHHHhccCCCCCCcEee-cCCC-CH-
Q psy15335 10 CVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGA--TEDLGCDVVNAVLENTVPYLPNDKLRII-QGPW-SP- 84 (552)
Q Consensus 10 ~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~--~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG-~P- 84 (552)
..+.+.-+|...+--.++++.+.+.+++++-|--.+++... ....+.+.+.++|+++++.+ +.|..+ ++.+ ++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~ 176 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLE 176 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHH
Confidence 34555556667777788999999999999988643332111 00114677889999998877 788776 4433 32
Q ss_pred --HHH-HHHHHcCCccccCh
Q psy15335 85 --MNI-VQFVQRGIDMFDSG 101 (552)
Q Consensus 85 --~dI-l~aValGVDmFDcv 101 (552)
.++ -.+.+.|+|.+...
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 177 DIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 223 33456788877543
No 92
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=54.08 E-value=42 Score=34.59 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=48.5
Q ss_pred cCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 33 TRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 33 ~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
+.+.+.+.+|-+ ..+++.+++..+... ++.|....|-=+|..+....+.|+|.+-..+++..+
T Consensus 199 ~~gaD~I~ld~~----------~~e~l~~~v~~i~~~--~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 199 EAGADIIMLDNM----------SPEELKEAVKLLKGL--PRVLLEASGGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred HcCCCEEEECCC----------CHHHHHHHHHHhccC--CCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 467888888743 356677777766544 467888899889999999999999999876666544
No 93
>PLN02591 tryptophan synthase
Probab=53.78 E-value=58 Score=33.50 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccc
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmF 98 (552)
..+.|.+.+... ..+|= |.|+-..+-|.... ..+++.+.++.+++. .+.|..+ ||+-+|+++-.+...|.|-+
T Consensus 142 t~~~ri~~ia~~-~~gFI-Y~Vs~~GvTG~~~~--~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 142 TPTERMKAIAEA-SEGFV-YLVSSTGVTGARAS--VSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred CCHHHHHHHHHh-CCCcE-EEeeCCCCcCCCcC--CchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCCEE
Confidence 345566555555 34554 55553333233221 156778888888885 5899998 88889999999999999966
Q ss_pred cChhHH
Q psy15335 99 DSGLPL 104 (552)
Q Consensus 99 Dcv~Pt 104 (552)
=..+..
T Consensus 216 IVGSal 221 (250)
T PLN02591 216 IVGSAM 221 (250)
T ss_pred EECHHH
Confidence 555543
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.48 E-value=69 Score=29.71 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHHHcCCccc
Q psy15335 26 YCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aValGVDmF 98 (552)
+.++.+.+.+.+-++|-++.. . ..+.+.++++.+.+.=+.+ +..+.| .--+++...+.++|||-|
T Consensus 44 ~~v~aa~e~~adii~iSsl~~--~-----~~~~~~~~~~~L~~~g~~~-i~vivGG~~~~~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAG--G-----HLTLVPALRKELDKLGRPD-ILVVVGGVIPPQDFDELKEMGVAEI 109 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchh--h-----hHHHHHHHHHHHHhcCCCC-CEEEEeCCCChHhHHHHHHCCCCEE
Confidence 344444555667777666553 1 2456777777776643434 444455 234557999999999854
No 95
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=53.32 E-value=37 Score=37.12 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=57.7
Q ss_pred eeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccCh-hHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHH
Q psy15335 14 PIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGC-DVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFV 91 (552)
Q Consensus 14 IVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~-eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aV 91 (552)
+|..|. +..+-|+.+.+.|++|+.+.+-. |-. ++. ---.++|.++.+.+....|.++ =||-+..+|+.|.
T Consensus 256 vivKgV---~~~~dA~~a~~~G~d~I~vsnhG--Gr~---~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KAL 327 (383)
T cd03332 256 IVLKGI---LHPDDARRAVEAGVDGVVVSNHG--GRQ---VDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKAL 327 (383)
T ss_pred EEEecC---CCHHHHHHHHHCCCCEEEEcCCC--CcC---CCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHH
Confidence 444444 44567778888999999998643 211 110 1123344444444556678887 6788999999999
Q ss_pred HcCCccccChhHHHhh
Q psy15335 92 QRGIDMFDSGLPLVLA 107 (552)
Q Consensus 92 alGVDmFDcv~Ptr~A 107 (552)
++|.|..=..-|..++
T Consensus 328 aLGA~~v~iGr~~l~~ 343 (383)
T cd03332 328 ALGAKAVLIGRPYAYG 343 (383)
T ss_pred HcCCCEEEEcHHHHHH
Confidence 9999987777777754
No 96
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=53.21 E-value=71 Score=34.73 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=52.8
Q ss_pred eeccCCCHHHHHHHHHHHHc-CCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHH
Q psy15335 14 PIQGGLDLSLRRYCAELYAT-RDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFV 91 (552)
Q Consensus 14 IVQGG~~~DLR~~SA~eL~~-l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aV 91 (552)
.|-=|..++-..+..+-++. .+.+.++|.--+. ..+-+.++|.++++..|. +..+-| |.+|++...++
T Consensus 99 ~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhG--------hs~~~i~~ik~ir~~~p~--~~viaGNV~T~e~a~~Li 168 (343)
T TIGR01305 99 AVSSGSSDNDLEKMTSILEAVPQLKFICLDVANG--------YSEHFVEFVKLVREAFPE--HTIMAGNVVTGEMVEELI 168 (343)
T ss_pred EEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCC--------cHHHHHHHHHHHHhhCCC--CeEEEecccCHHHHHHHH
Confidence 33334454444444333332 3688899985553 356778999999998874 556788 99999999999
Q ss_pred HcCCccc
Q psy15335 92 QRGIDMF 98 (552)
Q Consensus 92 alGVDmF 98 (552)
..|+|.+
T Consensus 169 ~aGAD~i 175 (343)
T TIGR01305 169 LSGADIV 175 (343)
T ss_pred HcCCCEE
Confidence 9999953
No 97
>PLN02979 glycolate oxidase
Probab=52.69 E-value=27 Score=38.06 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=60.4
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChh-HHHHHHHHhccCCCCCCcEee-cCCCCHHHHHH
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCD-VVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQ 89 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~e-em~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~ 89 (552)
.-+|..|. +..+-|+.+.+.|++|+.++|-.. -. ++.. --.++|.++.+.+....|.++ =||-+..||+.
T Consensus 224 ~PvivKgV---~~~~dA~~a~~~Gvd~I~VsnhGG--rq---ld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~K 295 (366)
T PLN02979 224 LPILVKGV---LTGEDARIAIQAGAAGIIVSNHGA--RQ---LDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFK 295 (366)
T ss_pred CCEEeecC---CCHHHHHHHHhcCCCEEEECCCCc--CC---CCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHH
Confidence 34555555 346778888999999999998653 11 1211 113344444444445567777 67889999999
Q ss_pred HHHcCCccccChhHHHhh
Q psy15335 90 FVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 90 aValGVDmFDcv~Ptr~A 107 (552)
|.++|.|..=..-|..++
T Consensus 296 ALALGAdaV~iGrp~L~~ 313 (366)
T PLN02979 296 ALALGASGIFIGRPVVFS 313 (366)
T ss_pred HHHcCCCEEEEcHHHHHH
Confidence 999999988888888765
No 98
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=52.48 E-value=34 Score=38.30 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=51.2
Q ss_pred HHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHHHcCCcccc
Q psy15335 27 CAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aValGVDmFD 99 (552)
-++.|.+.+++-++|..-++ ..+-+.++|+++.+..| +.|... | +.+++....++..|+|.++
T Consensus 229 ra~~Lv~aGVd~i~~D~a~g--------~~~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 229 KAKALLDAGVDVLVIDTAHG--------HQVKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHhCCCEEEEeCCCC--------CcHHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 34556677999999996663 35667889999988774 688775 7 8899999999999999999
No 99
>PLN02535 glycolate oxidase
Probab=52.23 E-value=18 Score=39.18 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=58.6
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccCh-hHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHH
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGC-DVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQ 89 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~-eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~ 89 (552)
.-+|..|. +..+-|+.+.+.|++++.+.|-.. - .++. -.-.+.|..+.+.+..+.|.+. =||-++.+|+.
T Consensus 224 ~PvivKgV---~~~~dA~~a~~~GvD~I~vsn~GG--r---~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~K 295 (364)
T PLN02535 224 LPILIKGV---LTREDAIKAVEVGVAGIIVSNHGA--R---QLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFK 295 (364)
T ss_pred CCEEEecC---CCHHHHHHHHhcCCCEEEEeCCCc--C---CCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHH
Confidence 34555554 444568888899999999986432 1 1121 1113344444444445577777 56779999999
Q ss_pred HHHcCCccccChhHHHhh
Q psy15335 90 FVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 90 aValGVDmFDcv~Ptr~A 107 (552)
+.++|.|..=...|..++
T Consensus 296 ALalGA~aV~vGr~~l~~ 313 (364)
T PLN02535 296 ALALGAQAVLVGRPVIYG 313 (364)
T ss_pred HHHcCCCEEEECHHHHhh
Confidence 999999988888887765
No 100
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=51.95 E-value=22 Score=38.15 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCcceEEEccccCCCCCccccCh-hHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccC
Q psy15335 23 LRRYCAELYATRDVHGFLIDGLCADEGATEDLGC-DVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDS 100 (552)
Q Consensus 23 LR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~-eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDc 100 (552)
+..+-|+.+.+.|++|+.++|-.+ -. ++. ---.+.|.++...++.+-|.++ =||=++.||+.++++|.|++=.
T Consensus 234 ~~~~da~~~~~~G~~~i~vs~hGG--r~---~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~i 308 (356)
T PF01070_consen 234 LSPEDAKRAVDAGVDGIDVSNHGG--RQ---LDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGI 308 (356)
T ss_dssp -SHHHHHHHHHTT-SEEEEESGTG--TS---STTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred ccHHHHHHHHhcCCCEEEecCCCc--cc---CccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEE
Confidence 677788999999999999997553 11 221 1123344444444567888887 5777999999999999999988
Q ss_pred hhHHHhh
Q psy15335 101 GLPLVLA 107 (552)
Q Consensus 101 v~Ptr~A 107 (552)
.-|..++
T Consensus 309 gr~~l~~ 315 (356)
T PF01070_consen 309 GRPFLYA 315 (356)
T ss_dssp SHHHHHH
T ss_pred ccHHHHH
Confidence 8887775
No 101
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=51.80 E-value=8 Score=42.82 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=35.8
Q ss_pred CCcccccHHHHHHHHHhhccccCccccc-----cCCccchh-hccCCCCceecccc
Q psy15335 277 GKNELSNTSDIYSSMESDIHQSTHQEAL-----IINTDDVA-SKSSEKDTLYTKSS 326 (552)
Q Consensus 277 G~lek~~~~~Iv~~~~~~LP~~kPrHL~-----Gi~P~dIf-aValGvDtFDcv~p 326 (552)
|.+..+.-.++|..+++.+| .|.+|. |..+.-.+ ||++|+|++|++..
T Consensus 180 GlltP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAis 233 (472)
T COG5016 180 GLLTPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAIS 233 (472)
T ss_pred ccCChHHHHHHHHHHHHhcC--CeeEEecccccchHHHHHHHHHHhCcchhhhhhc
Confidence 55666777888999999888 676664 33444445 89999999998764
No 102
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=51.52 E-value=37 Score=37.38 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccCh
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSG 101 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv 101 (552)
++.|.+.+++.++|.--+. +...+.++|+++++..| +.|..+=++.++++...++.+|+|.++..
T Consensus 229 ~~~L~~aG~d~I~vd~a~g--------~~~~~~~~i~~i~~~~~-~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 229 AEALVKAGVDVIVIDSSHG--------HSIYVIDSIKEIKKTYP-DLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHhCCCEEEEECCCC--------cHhHHHHHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 3466778999999986553 24557888888888876 67877667899999999999999998864
No 103
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=50.93 E-value=35 Score=37.19 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=60.7
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChh-HHHHHHHHhccCCCCCCcEee-cCCCCHHHHHH
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCD-VVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQ 89 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~e-em~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~ 89 (552)
.-||..|. +..+-|+.+.+.|++|+.+.|-.. -. ++.. --.++|.++.+.+....|.++ =||-+..||+.
T Consensus 225 ~PiivKgV---~~~~dA~~a~~~Gvd~I~VsnhGG--rq---ld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~K 296 (367)
T PLN02493 225 LPILVKGV---LTGEDARIAIQAGAAGIIVSNHGA--RQ---LDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFK 296 (367)
T ss_pred CCEEeecC---CCHHHHHHHHHcCCCEEEECCCCC--CC---CCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHH
Confidence 34555555 346778888899999999998553 21 2211 123444444444445677777 67889999999
Q ss_pred HHHcCCccccChhHHHhh
Q psy15335 90 FVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 90 aValGVDmFDcv~Ptr~A 107 (552)
|+++|.|..=..-|..++
T Consensus 297 ALALGA~aV~iGr~~l~~ 314 (367)
T PLN02493 297 ALALGASGIFIGRPVVFS 314 (367)
T ss_pred HHHcCCCEEEEcHHHHHH
Confidence 999999988888888765
No 104
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=50.59 E-value=50 Score=34.24 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=44.7
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhH
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~P 103 (552)
..+.+.+++.+|-+ .++++.+++..+.... ++.|....|-=+|..+.+..+.|+|.| ++..
T Consensus 199 A~~~gaD~I~ld~~----------~p~~l~~~~~~~~~~~-~~i~i~AsGGI~~~ni~~~~~~Gvd~I-~vsa 259 (272)
T cd01573 199 AAEAGADILQLDKF----------SPEELAELVPKLRSLA-PPVLLAAAGGINIENAAAYAAAGADIL-VTSA 259 (272)
T ss_pred HHHcCCCEEEECCC----------CHHHHHHHHHHHhccC-CCceEEEECCCCHHHHHHHHHcCCcEE-EECh
Confidence 34678888888743 3456666776554433 468999998669999999999999999 5543
No 105
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.45 E-value=50 Score=35.27 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=62.5
Q ss_pred eEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCC----CCHH
Q psy15335 11 VIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGP----WSPM 85 (552)
Q Consensus 11 LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGv----G~P~ 85 (552)
.|+.--++ ..++.-.+.++.+.+.|.+.+.|.-. ...+.++++.++|..+++.++ .|.-+++- -...
T Consensus 130 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT------~G~~~P~~v~~lv~~l~~~~~--v~l~~H~HNd~GlA~A 201 (365)
T TIGR02660 130 SVGGEDASRADPDFLVELAEVAAEAGADRFRFADT------VGILDPFSTYELVRALRQAVD--LPLEMHAHNDLGMATA 201 (365)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc------CCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHH
Confidence 45554454 56777788888888999998887633 334578999999999988774 45544332 2357
Q ss_pred HHHHHHHcCCccccChhHHH
Q psy15335 86 NIVQFVQRGIDMFDSGLPLV 105 (552)
Q Consensus 86 dIl~aValGVDmFDcv~Ptr 105 (552)
..+.|+..|+|.+|++.-=.
T Consensus 202 NalaA~~aGa~~vd~tl~Gi 221 (365)
T TIGR02660 202 NTLAAVRAGATHVNTTVNGL 221 (365)
T ss_pred HHHHHHHhCCCEEEEEeecc
Confidence 78899999999999886433
No 106
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.12 E-value=44 Score=36.07 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cCC-----
Q psy15335 25 RYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGP----- 81 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGv----- 81 (552)
.++|+.+.+.||+|+=|=+-+. .|.+.+. ...-+.+||+.+++..+++.|.-+ +..
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslen-R~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAA-RSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3577888889999997765551 1222221 235678999999999998887765 331
Q ss_pred ------CCHHHHHHH----HHcCCccccChh
Q psy15335 82 ------WSPMNIVQF----VQRGIDMFDSGL 102 (552)
Q Consensus 82 ------G~P~dIl~a----ValGVDmFDcv~ 102 (552)
-+|++++.. .+.|||+++.+.
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVDIFHCST 256 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 256655544 678999998854
No 107
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=50.09 E-value=63 Score=34.79 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=62.2
Q ss_pred eEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeec-----CCCCH
Q psy15335 11 VIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQ-----GPWSP 84 (552)
Q Consensus 11 LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLm-----GvG~P 84 (552)
.|+...++ ..++.-.+.++.+.+.|.+.+.|.-.. ..+.++++.+++..+++.+ +.|.-++ |.+ .
T Consensus 133 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~------G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd~GlA-~ 203 (378)
T PRK11858 133 SFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV------GILDPFTMYELVKELVEAV--DIPIEVHCHNDFGMA-T 203 (378)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC------CCCCHHHHHHHHHHHHHhc--CCeEEEEecCCcCHH-H
Confidence 34443443 678888889999999999998876333 3457889999999998887 4555553 333 5
Q ss_pred HHHHHHHHcCCccccChhH
Q psy15335 85 MNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~P 103 (552)
...+.|+..|+|.||++.-
T Consensus 204 AN~laAv~aGa~~vd~tv~ 222 (378)
T PRK11858 204 ANALAGIEAGAKQVHTTVN 222 (378)
T ss_pred HHHHHHHHcCCCEEEEeec
Confidence 6788999999999999764
No 108
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.84 E-value=47 Score=34.81 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccC-CCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPY-LPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~-LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
+++.+.+.+.+.+.. |+.+++.+++..+... +++....-.-|-=++..|.+..+.|||.+...++|..|
T Consensus 196 ~~a~~agaDiI~LDn----------~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 196 LKAAKAGADIIMLDN----------MTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred HHHHHcCcCEEEECC----------CCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 334457888888773 4567788888766543 23444455566569999999999999999999988755
No 109
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.43 E-value=81 Score=31.63 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=16.0
Q ss_pred EeecCCCCHHHHHHHHHcCCcc
Q psy15335 76 RIIQGPWSPMNIVQFVQRGIDM 97 (552)
Q Consensus 76 RyLmGvG~P~dIl~aValGVDm 97 (552)
.++.|+.+|.+|..|.++|.|+
T Consensus 103 ~~iPG~~TptEi~~A~~~Ga~~ 124 (204)
T TIGR01182 103 PIIPGVATPSEIMLALELGITA 124 (204)
T ss_pred cEECCCCCHHHHHHHHHCCCCE
Confidence 3667777777777777777774
No 110
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.11 E-value=1.1e+02 Score=30.82 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=20.0
Q ss_pred CcEeecCCCCHHHHHHHHHcCCcc
Q psy15335 74 KLRIIQGPWSPMNIVQFVQRGIDM 97 (552)
Q Consensus 74 KPRyLmGvG~P~dIl~aValGVDm 97 (552)
.--++.|+.+|.+|..|.++|.|+
T Consensus 97 ~i~~iPG~~TptEi~~A~~~Ga~~ 120 (201)
T PRK06015 97 DVPLLPGAATPSEVMALREEGYTV 120 (201)
T ss_pred CCCEeCCCCCHHHHHHHHHCCCCE
Confidence 344779999999999999999884
No 111
>PRK08508 biotin synthase; Provisional
Probab=48.29 E-value=88 Score=32.14 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHcCCcceEEE--ccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCc
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLI--DGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGID 96 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaI--GGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVD 96 (552)
..++.-.+.|+++.+.|+..|++ +|...+ + ...+.+.+++..+.+..|.-.+--..|.-+++.+-.+-+.|+|
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~-~----~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld 114 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD-D----KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIF 114 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC-c----ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCC
Confidence 35566666777777889999987 443321 1 1346677888888776664444345899999999999999998
Q ss_pred cccC
Q psy15335 97 MFDS 100 (552)
Q Consensus 97 mFDc 100 (552)
.+=.
T Consensus 115 ~~~~ 118 (279)
T PRK08508 115 SYNH 118 (279)
T ss_pred EEcc
Confidence 7654
No 112
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=47.97 E-value=49 Score=39.95 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
+.++.-..=|++|.+.|..-++|=-..+ +|++..-..++.++++.. +-|.|++.-- .-..++.|+..|
T Consensus 691 Y~L~YY~~lA~el~~~GaHIlaIKDMAG------LLKP~AA~~Li~aLr~~~--dlPIHlHTHDTsG~~~at~~aA~~AG 762 (1149)
T COG1038 691 YTLDYYVKLAKELEKAGAHILAIKDMAG------LLKPAAAYRLISALRETV--DLPIHLHTHDTSGNGVATYLAAVEAG 762 (1149)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhhhh------ccCHHHHHHHHHHHHHhc--CCceEEeccCCCccHHHHHHHHHHcC
Confidence 3567777889999999999999975553 567888889999988887 8999996432 357889999999
Q ss_pred CccccChhHHH
Q psy15335 95 IDMFDSGLPLV 105 (552)
Q Consensus 95 VDmFDcv~Ptr 105 (552)
||+.|.+....
T Consensus 763 vDivD~A~~sm 773 (1149)
T COG1038 763 VDIVDVAMASM 773 (1149)
T ss_pred Cchhhhhhhhc
Confidence 99999987653
No 113
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.28 E-value=60 Score=34.20 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=49.5
Q ss_pred HcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 32 ATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 32 ~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
.+.+.+.+.++- |..+++.+++..+... .+..|.-..|-=++..|.+..+.|||.+-.++++..|
T Consensus 213 ~~~GaD~I~LDn----------~~~e~l~~av~~~~~~-~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa 277 (288)
T PRK07428 213 LEYGADIIMLDN----------MPVDLMQQAVQLIRQQ-NPRVKIEASGNITLETIRAVAETGVDYISSSAPITRS 277 (288)
T ss_pred HHcCCCEEEECC----------CCHHHHHHHHHHHHhc-CCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhCC
Confidence 357888888872 4567778877755332 3455777787669999999999999999999988755
No 114
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=47.15 E-value=91 Score=33.02 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=45.6
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCcccc
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFD 99 (552)
++.+.+.+++.+.|.--+ | +.+...++|+++.+..| +.|..+=.+.++.+...+++.|+|.+.
T Consensus 99 ~~~l~eagv~~I~vd~~~--G------~~~~~~~~i~~ik~~~p-~v~Vi~G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 99 AEALVEAGVDVIVIDSAH--G------HSVYVIEMIKFIKKKYP-NVDVIAGNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred HHHHHhcCCCEEEEECCC--C------CcHHHHHHHHHHHHHCC-CceEEECCCCCHHHHHHHHhcCCCEEE
Confidence 445556688887775322 2 23456778888887776 677666678899999999999999876
No 115
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=47.09 E-value=96 Score=32.95 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=56.3
Q ss_pred eccCCCHHHHHHHHHHHHcCC-cceEEE-ccccCCCC-------CccccChhHHHHHHHHhccCCCCCCcEeecC-CCCH
Q psy15335 15 IQGGLDLSLRRYCAELYATRD-VHGFLI-DGLCADEG-------ATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSP 84 (552)
Q Consensus 15 VQGG~~~DLR~~SA~eL~~l~-f~GyaI-GGl~v~GE-------~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P 84 (552)
+.||...+.-.+-++.|.+.| ++.+-| +|... .. +..........+++..+.+.+ +.|.+..| +-+|
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~ 297 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY-TLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDP 297 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC-cccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCH
Confidence 467778877778899999987 899988 44321 00 000111222456666666665 57988888 6799
Q ss_pred HHHHHHHHcC-CccccCh
Q psy15335 85 MNIVQFVQRG-IDMFDSG 101 (552)
Q Consensus 85 ~dIl~aValG-VDmFDcv 101 (552)
+++..+++.| +|++=..
T Consensus 298 ~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 298 AEAEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHHHcCCCCeeeec
Confidence 9999999987 8866433
No 116
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.56 E-value=36 Score=34.54 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=61.3
Q ss_pred ccCCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC
Q psy15335 4 KALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS 83 (552)
Q Consensus 4 e~Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~ 83 (552)
+.|+...+++||.+- +.+.=.+-++.|.+.|+.-+=|- |+...-.+.|+..+...+..-|..++|+|+
T Consensus 10 ~~l~~~~vi~Vvr~~-~~~~a~~~~~al~~gGi~~iEiT-----------~~tp~a~~~i~~l~~~~~~~~p~~~vGaGT 77 (222)
T PRK07114 10 TAMKATGMVPVFYHA-DVEVAKKVIKACYDGGARVFEFT-----------NRGDFAHEVFAELVKYAAKELPGMILGVGS 77 (222)
T ss_pred HHHHhCCEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEe-----------CCCCcHHHHHHHHHHHHHhhCCCeEEeeEe
Confidence 456778899999976 66666677888888888876654 122233556666666666667888999995
Q ss_pred ---HHHHHHHHHcCCccc
Q psy15335 84 ---PMNIVQFVQRGIDMF 98 (552)
Q Consensus 84 ---P~dIl~aValGVDmF 98 (552)
++++-.+++.|.+.+
T Consensus 78 Vl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 78 IVDAATAALYIQLGANFI 95 (222)
T ss_pred CcCHHHHHHHHHcCCCEE
Confidence 899999999999964
No 117
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=46.54 E-value=1.5e+02 Score=30.71 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=55.0
Q ss_pred CCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCC-------CCccccChhHHHHHHHHhccCCCCCCcEee-c
Q psy15335 8 DTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADE-------GATEDLGCDVVNAVLENTVPYLPNDKLRII-Q 79 (552)
Q Consensus 8 ~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~G-------E~~~~m~~eem~~iL~~v~~~LP~dKPRyL-m 79 (552)
+..+++.+.|+...+.-.++|+.+.+.+++++-|-=-+++. .. ...+++.+.++++.+++.. ++|..+ +
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~-l~~~~~~~~~iv~~v~~~~--~~Pv~vKl 175 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAA-VGQDPELVEEICRWVREAV--KIPVIAKL 175 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchh-hccCHHHHHHHHHHHHHhc--CCCeEEEC
Confidence 46788889898677877889999988788877763112211 11 1125778899998888765 467665 3
Q ss_pred CC--CCHHHHHH-HHHcCCcc
Q psy15335 80 GP--WSPMNIVQ-FVQRGIDM 97 (552)
Q Consensus 80 Gv--G~P~dIl~-aValGVDm 97 (552)
.. -...+++. +.+.|+|.
T Consensus 176 ~~~~~~~~~~a~~~~~~Gadg 196 (299)
T cd02940 176 TPNITDIREIARAAKEGGADG 196 (299)
T ss_pred CCCchhHHHHHHHHHHcCCCE
Confidence 32 23334444 55666663
No 118
>PLN02334 ribulose-phosphate 3-epimerase
Probab=46.26 E-value=75 Score=31.48 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=45.7
Q ss_pred cceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHH
Q psy15335 36 VHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 36 f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Pt 104 (552)
.+.+.+|.+.+ |..-+.+ .....+.|..+++.++ +.|..+-|-=++..+..+++.|+|.|=..++.
T Consensus 140 ~Dyi~~~~v~p-g~~~~~~-~~~~~~~i~~~~~~~~-~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 140 VDMVLVMSVEP-GFGGQSF-IPSMMDKVRALRKKYP-ELDIEVDGGVGPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred CCEEEEEEEec-CCCcccc-CHHHHHHHHHHHHhCC-CCcEEEeCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 78888888775 4332222 3445556666666554 36888887669999999999999988555443
No 119
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=46.02 E-value=52 Score=33.19 Aligned_cols=68 Identities=10% Similarity=-0.061 Sum_probs=49.3
Q ss_pred HHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 27 CAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmF 98 (552)
-++++.+++.+++++|-+-+ .++..+.+..-.+.+.++....+ .|.+.+|-=+|+.+..+.+.|+|-+
T Consensus 116 ea~~A~~~g~DYv~~Gpifp--T~tK~~~~~~G~~~l~~~~~~~~--iP~vAIGGi~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 116 EALEAEELGADYVGLGPIFP--TSTKPDAPPLGLEGLREIRELVN--IPVVAIGGINLENVPEVLEAGADGV 183 (211)
T ss_pred HHHHHHhcCCCEEEECCcCC--CCCCCCCCccCHHHHHHHHHhCC--CCEEEEcCCCHHHHHHHHHhCCCeE
Confidence 34556677899999997764 23333334444566666666665 8999999889999999999999944
No 120
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.19 E-value=84 Score=31.12 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHHHc-CCccccChhH
Q psy15335 26 YCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFVQR-GIDMFDSGLP 103 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aVal-GVDmFDcv~P 103 (552)
+=++.+.+.+++.+.+.+....|.. +-. -.+++..+...+ +.|.+.-| +.+|.++..+.+. |+|.+=...+
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~-~g~----~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTK-KGY----DLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCC-CCC----CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 3456677889999999887642211 111 234444444443 67887754 8899999999997 9998877666
Q ss_pred HHhhc
Q psy15335 104 LVLAD 108 (552)
Q Consensus 104 tr~AR 108 (552)
....+
T Consensus 226 l~~~~ 230 (243)
T cd04731 226 FHFGE 230 (243)
T ss_pred HHcCC
Confidence 55543
No 121
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.18 E-value=63 Score=35.96 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccC
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDS 100 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDc 100 (552)
.+-++.+.+.+++.+++..-+. ..+.+.+.+++++...| +.|..+=++.++++...++.+|+|.++.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g--------~~~~vl~~i~~i~~~~p-~~~vi~g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHG--------HSEGVLDRVREIKAKYP-DVQIIAGNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCC--------cchhHHHHHHHHHhhCC-CCCEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 5667778888999998875442 23557888888888884 6888878888999999999999999993
No 122
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=45.16 E-value=60 Score=35.28 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN 86 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d 86 (552)
+++.++++-.|=...+ .+-++.|.+.+++-++|..-++ ..+.+.+.|.++++..| +.|...=.|.+++.
T Consensus 94 ~~~l~V~aavg~~~~~--~er~~~L~~agvD~ivID~a~g--------~s~~~~~~ik~ik~~~~-~~~viaGNV~T~e~ 162 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDDD--FERAEALVEAGVDVIVIDSAHG--------HSEHVIDMIKKIKKKFP-DVPVIAGNVVTYEG 162 (352)
T ss_dssp TSCBCEEEEEESSTCH--HHHHHHHHHTT-SEEEEE-SST--------TSHHHHHHHHHHHHHST-TSEEEEEEE-SHHH
T ss_pred cccceEEEEecCCHHH--HHHHHHHHHcCCCEEEccccCc--------cHHHHHHHHHHHHHhCC-CceEEecccCCHHH
Confidence 4566677777765433 2233446677999999997664 35667889999999998 88988888999999
Q ss_pred HHHHHHcCCcc
Q psy15335 87 IVQFVQRGIDM 97 (552)
Q Consensus 87 Il~aValGVDm 97 (552)
...++..|+|.
T Consensus 163 a~~L~~aGad~ 173 (352)
T PF00478_consen 163 AKDLIDAGADA 173 (352)
T ss_dssp HHHHHHTT-SE
T ss_pred HHHHHHcCCCE
Confidence 99999999997
No 123
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=44.73 E-value=53 Score=33.41 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=61.3
Q ss_pred cCCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC-
Q psy15335 5 ALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS- 83 (552)
Q Consensus 5 ~Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~- 83 (552)
.|+.+.+++||.|- ..++=..-++.|.+-|++-+=|= ++...-.+.|..+.+..| +.+.|+|+
T Consensus 9 ~l~~~~vI~Vlr~~-~~e~a~~~a~Ali~gGi~~IEIT-----------l~sp~a~e~I~~l~~~~p----~~lIGAGTV 72 (211)
T COG0800 9 KLKAQPVVPVIRGD-DVEEALPLAKALIEGGIPAIEIT-----------LRTPAALEAIRALAKEFP----EALIGAGTV 72 (211)
T ss_pred HHHHCCeeEEEEeC-CHHHHHHHHHHHHHcCCCeEEEe-----------cCCCCHHHHHHHHHHhCc----ccEEccccc
Confidence 56778899999887 78888888999989888766653 234445677777777666 78999995
Q ss_pred --HHHHHHHHHcCCccc
Q psy15335 84 --PMNIVQFVQRGIDMF 98 (552)
Q Consensus 84 --P~dIl~aValGVDmF 98 (552)
|+++-++++.|-+..
T Consensus 73 L~~~q~~~a~~aGa~fi 89 (211)
T COG0800 73 LNPEQARQAIAAGAQFI 89 (211)
T ss_pred cCHHHHHHHHHcCCCEE
Confidence 999999999999964
No 124
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.55 E-value=89 Score=34.00 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCcceEEEccccCCCCCccccCh-hHHHHHHHHhccCCCCCCcEeec-CCCCHHHHHHHHHcCCccccCh
Q psy15335 24 RRYCAELYATRDVHGFLIDGLCADEGATEDLGC-DVVNAVLENTVPYLPNDKLRIIQ-GPWSPMNIVQFVQRGIDMFDSG 101 (552)
Q Consensus 24 R~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~-eem~~iL~~v~~~LP~dKPRyLm-GvG~P~dIl~aValGVDmFDcv 101 (552)
..+-|+.+.+.|++|+.+.+-.+ -. ++. ..-.+.|..+.+..+ .|.++- ||-++.+|+.|.++|.|..=..
T Consensus 246 ~~eda~~a~~~G~d~I~VSnhGG--rq---ld~~~~~~~~L~ei~~~~~--~~vi~dGGIr~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 246 TAEDAKRCIELGADGVILSNHGG--RQ---LDDAIAPIEALAEIVAATY--KPVLIDSGIRRGSDIVKALALGANAVLLG 318 (361)
T ss_pred CHHHHHHHHHCCcCEEEECCCCc--CC---CcCCccHHHHHHHHHHHhC--CeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 34457778889999999986442 22 220 011223333333332 777775 7889999999999999988888
Q ss_pred hHHHhh
Q psy15335 102 LPLVLA 107 (552)
Q Consensus 102 ~Ptr~A 107 (552)
.|.+++
T Consensus 319 r~~l~~ 324 (361)
T cd04736 319 RATLYG 324 (361)
T ss_pred HHHHHH
Confidence 887765
No 125
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=44.06 E-value=1.3e+02 Score=32.32 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=52.1
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCC--cceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHH
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRD--VHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIV 88 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~--f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl 88 (552)
++.+-=|+..+-.++... |.+.+ .+.++|.--+. ....+.++|+++++..| .|..+-| ++++++..
T Consensus 84 ~v~~SvG~t~e~~~r~~~-lv~a~~~~d~i~~D~ahg--------~s~~~~~~i~~i~~~~p--~~~vi~GnV~t~e~a~ 152 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQ-LAEEALTPEYITIDIAHG--------HSNSVINMIKHIKTHLP--DSFVIAGNVGTPEAVR 152 (321)
T ss_pred EEEEEcCCCHHHHHHHHH-HHhcCCCCCEEEEeCccC--------chHHHHHHHHHHHHhCC--CCEEEEecCCCHHHHH
Confidence 433333444444444433 33434 46677764332 34667888888888885 3667788 99999999
Q ss_pred HHHHcCCccccC
Q psy15335 89 QFVQRGIDMFDS 100 (552)
Q Consensus 89 ~aValGVDmFDc 100 (552)
.+++.|+|.++.
T Consensus 153 ~l~~aGad~I~V 164 (321)
T TIGR01306 153 ELENAGADATKV 164 (321)
T ss_pred HHHHcCcCEEEE
Confidence 999999999873
No 126
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=43.75 E-value=66 Score=33.29 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=53.0
Q ss_pred HHHHHHHcCCcceEEEccccCCCCCccccC-hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccChhH
Q psy15335 26 YCAELYATRDVHGFLIDGLCADEGATEDLG-CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~-~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv~P 103 (552)
+-|+.+.+.|++++.+.|-. |.. ++ .-.-.+.|..+.+.++.+-|.+. =|+.++.+++.+.++|.|..=...|
T Consensus 184 ~~a~~a~~~G~d~I~v~~~g--G~~---~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHG--GRQ---LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCC--CCC---CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 44777888999999997622 211 11 11124445555555665677776 4577999999999999998888888
Q ss_pred HHhh
Q psy15335 104 LVLA 107 (552)
Q Consensus 104 tr~A 107 (552)
..++
T Consensus 259 ~l~~ 262 (299)
T cd02809 259 FLYG 262 (299)
T ss_pred HHHH
Confidence 7765
No 127
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=43.72 E-value=64 Score=31.04 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCcccc
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFD 99 (552)
+.+.+.|.+++..++.. .++++..... + +.++.|+.+|.++..|...|+|.+=
T Consensus 70 ~~a~~~Ga~~i~~p~~~--------------~~~~~~~~~~---~-~~~i~gv~t~~e~~~A~~~Gad~i~ 122 (190)
T cd00452 70 DAAIAAGAQFIVSPGLD--------------PEVVKAANRA---G-IPLLPGVATPTEIMQALELGADIVK 122 (190)
T ss_pred HHHHHcCCCEEEcCCCC--------------HHHHHHHHHc---C-CcEECCcCCHHHHHHHHHCCCCEEE
Confidence 44445677777655322 2344444332 2 3467899999999999999999654
No 128
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=43.34 E-value=71 Score=33.37 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCcEee-cCCCCHHHHHHHHHcCCccc
Q psy15335 73 DKLRII-QGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 73 dKPRyL-mGvG~P~dIl~aValGVDmF 98 (552)
+-|..+ -|+|+|.+-.++.++|+|-.
T Consensus 182 ~VPviVDAGiG~pSdAa~aMElG~DaV 208 (262)
T COG2022 182 DVPVIVDAGIGTPSDAAQAMELGADAV 208 (262)
T ss_pred CCCEEEeCCCCChhHHHHHHhccccee
Confidence 778888 89999999999999999944
No 129
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=43.32 E-value=1e+02 Score=31.86 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=56.7
Q ss_pred eeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHc
Q psy15335 14 PIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQR 93 (552)
Q Consensus 14 IVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aVal 93 (552)
-+-+....+.-.+.++.+.+.+++.+.|.-=++. +. .....++|+++++.++ .|..+=++.++.+...|.+.
T Consensus 121 ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~-~~-----~~~~~~~i~~l~~~~~--~pvivK~v~s~~~a~~a~~~ 192 (299)
T cd02809 121 QLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV-LG-----RRLTWDDLAWLRSQWK--GPLILKGILTPEDALRAVDA 192 (299)
T ss_pred EEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC-CC-----CCCCHHHHHHHHHhcC--CCEEEeecCCHHHHHHHHHC
Confidence 3334446777777888888899999888532210 00 0023456777776664 78888889999999999999
Q ss_pred CCccccCh
Q psy15335 94 GIDMFDSG 101 (552)
Q Consensus 94 GVDmFDcv 101 (552)
|+|.++..
T Consensus 193 G~d~I~v~ 200 (299)
T cd02809 193 GADGIVVS 200 (299)
T ss_pred CCCEEEEc
Confidence 99999876
No 130
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=42.78 E-value=96 Score=32.70 Aligned_cols=64 Identities=14% Similarity=0.005 Sum_probs=36.6
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccc
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmF 98 (552)
|++|.+.|..-+.--|-. .|......++.-+.-|++ . .+-|..+ -|||+|.++..++++|.|-.
T Consensus 151 a~rLed~Gc~aVMPlgsP-IGSg~Gl~n~~~l~~i~e----~--~~vpVivdAGIgt~sDa~~AmElGaDgV 215 (267)
T CHL00162 151 AKHLEDIGCATVMPLGSP-IGSGQGLQNLLNLQIIIE----N--AKIPVIIDAGIGTPSEASQAMELGASGV 215 (267)
T ss_pred HHHHHHcCCeEEeeccCc-ccCCCCCCCHHHHHHHHH----c--CCCcEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 344444454444433333 233222334444444444 2 2356665 79999999999999999943
No 131
>PLN02321 2-isopropylmalate synthase
Probab=42.29 E-value=72 Score=37.21 Aligned_cols=88 Identities=9% Similarity=-0.027 Sum_probs=64.2
Q ss_pred ceEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCC--CcEee-----cCC
Q psy15335 10 CVIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPND--KLRII-----QGP 81 (552)
Q Consensus 10 ~LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~d--KPRyL-----mGv 81 (552)
.-|++--++ ..++.-.+.++.+.+.|.+-+.|.-.. ..+.+.++.++|..+++.+|.. .+.-+ +|.
T Consensus 227 v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTv------G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~Gl 300 (632)
T PLN02321 227 VEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTV------GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGL 300 (632)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccc------cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCH
Confidence 344443333 778888899999999999998886433 3356899999999999988863 33333 244
Q ss_pred CCHHHHHHHHHcCCccccChhHH
Q psy15335 82 WSPMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 82 G~P~dIl~aValGVDmFDcv~Pt 104 (552)
+ -...+.|+..|+|.|||+.-=
T Consensus 301 A-vANslaAv~AGA~~Vd~TinG 322 (632)
T PLN02321 301 S-TANTLAGAHAGARQVEVTING 322 (632)
T ss_pred H-HHHHHHHHHhCCCEEEEeccc
Confidence 3 346788999999999998743
No 132
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=42.17 E-value=62 Score=33.48 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccChh
Q psy15335 56 CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSGL 102 (552)
Q Consensus 56 ~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv~ 102 (552)
.+++.++++.+++.. ++|..+ |||-+|+++-.+...|.|.+=.-+
T Consensus 187 ~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 187 DKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred cHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 467888888888854 889998 888899999999999999654433
No 133
>PTZ00413 lipoate synthase; Provisional
Probab=42.00 E-value=1.1e+02 Score=33.92 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC--CCCHHHHHHHHHcCCc
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG--PWSPMNIVQFVQRGID 96 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG--vG~P~dIl~aValGVD 96 (552)
.+++.=.+-|+.+.++|+..++|-..- ......-..+.+.++|..+....|.-+.=.++| .|+.+.+-.+.+.|+|
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~--RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~d 254 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVD--RDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLS 254 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEc--CCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCC
Confidence 478888899999999999866665332 211111125789999999999888888888889 7799999999999999
Q ss_pred cccC
Q psy15335 97 MFDS 100 (552)
Q Consensus 97 mFDc 100 (552)
.|=.
T Consensus 255 vynH 258 (398)
T PTZ00413 255 VYAH 258 (398)
T ss_pred EEec
Confidence 8844
No 134
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=41.60 E-value=40 Score=33.77 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHH
Q psy15335 27 CAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIV 88 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl 88 (552)
-++.+.+.|.+++.|||... ++.+.+.+++..+++. .++|..|+ .|++..|.
T Consensus 16 ia~~v~~~gtDaI~VGGS~g-------vt~~~~~~~v~~ik~~--~~lPvilf-p~~~~~i~ 67 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLG-------IVESNLDQTVKKIKKI--TNLPVILF-PGNVNGLS 67 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCC-------CCHHHHHHHHHHHHhh--cCCCEEEE-CCCccccC
Confidence 45577889999999998652 3578888899888875 48999988 57776554
No 135
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=41.14 E-value=95 Score=35.23 Aligned_cols=77 Identities=9% Similarity=-0.045 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCC--CCcEeec-----CCCCHHHHHHHH
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN--DKLRIIQ-----GPWSPMNIVQFV 91 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~--dKPRyLm-----GvG~P~dIl~aV 91 (552)
.+++.-.+.++++.+.|.+.+.|.-.. ..+.+.++.++|..+++.+|. +.|.-++ |.+ ....+.|+
T Consensus 236 td~efl~~~~~~a~~~Gad~I~l~DTv------G~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlA-vANslaAi 308 (503)
T PLN03228 236 SDKEFLCKILGEAIKAGATSVGIADTV------GINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLA-TANTIAGI 308 (503)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCC------CCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChH-HHHHHHHH
Confidence 667777888888889999988876333 345788999999999888874 3454443 333 46788899
Q ss_pred HcCCccccChh
Q psy15335 92 QRGIDMFDSGL 102 (552)
Q Consensus 92 alGVDmFDcv~ 102 (552)
..|+|.+|++.
T Consensus 309 ~aGa~~Vd~Tv 319 (503)
T PLN03228 309 CAGARQVEVTI 319 (503)
T ss_pred HhCCCEEEEec
Confidence 99999999864
No 136
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=40.78 E-value=1.5e+02 Score=31.27 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=61.0
Q ss_pred ceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccC------CCCCcccc-ChhHHHHHHHHhccCCCCCCcEee-cCC
Q psy15335 10 CVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCA------DEGATEDL-GCDVVNAVLENTVPYLPNDKLRII-QGP 81 (552)
Q Consensus 10 ~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v------~GE~~~~m-~~eem~~iL~~v~~~LP~dKPRyL-mGv 81 (552)
..+++--+|.+++.-.++|+.+.+.+|+++=|-.=++ .|....+| +.+.+.++|..+++.+|.+.|.-+ +.+
T Consensus 63 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 63 TLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 3456666788999999999999999988776642221 11111122 578899999999999988888877 444
Q ss_pred C--CHH---HHHH-HHHcCCccccC
Q psy15335 82 W--SPM---NIVQ-FVQRGIDMFDS 100 (552)
Q Consensus 82 G--~P~---dIl~-aValGVDmFDc 100 (552)
| .+. +++. +.+.|+|++.-
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVV 167 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEE
Confidence 4 222 3333 44689998844
No 137
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=40.69 E-value=65 Score=33.33 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
++..+.+.+++.+|- |..+++.++++.+ +...|....|-=+++.+....+.|+|.+-...++..+
T Consensus 192 ~~A~~~gaDyI~ld~----------~~~e~lk~~v~~~----~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvgait~sa 256 (265)
T TIGR00078 192 EEAAEAGADIIMLDN----------MKPEEIKEAVQLL----KGRVLLEASGGITLDNLEEYAETGVDVISSGALTHSV 256 (265)
T ss_pred HHHHHcCCCEEEECC----------CCHHHHHHHHHHh----cCCCcEEEECCCCHHHHHHHHHcCCCEEEeCHHHcCC
Confidence 334467888888873 3356667776653 3347888898779999999999999999988877655
No 138
>PRK13753 dihydropteroate synthase; Provisional
Probab=40.69 E-value=1.3e+02 Score=31.85 Aligned_cols=82 Identities=7% Similarity=-0.004 Sum_probs=54.1
Q ss_pred ccCCC--HHHHHHHHHHHHcCCcceEEEccccCCCCCccccC-hhHHH---HHHHHhccCCCCCCcEeecCCCCHHHHHH
Q psy15335 16 QGGLD--LSLRRYCAELYATRDVHGFLIDGLCADEGATEDLG-CDVVN---AVLENTVPYLPNDKLRIIQGPWSPMNIVQ 89 (552)
Q Consensus 16 QGG~~--~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~-~eem~---~iL~~v~~~LP~dKPRyLmGvG~P~dIl~ 89 (552)
-||.+ .+--.+-++++.+.|.+.+=|||-+. .+.+...+ .+|+. ++|+.+.+ ...|. -.=-.+|..+-.
T Consensus 17 DGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeST-rPga~~vs~eeE~~Rv~pvI~~l~~---~~~~I-SIDT~~~~va~~ 91 (279)
T PRK13753 17 DESRRLDPAGAVTAAIEMLRVGSDVVDVGPAAS-HPDARPVSPADEIRRIAPLLDALSD---QMHRV-SIDSFQPETQRY 91 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCC-CCCCCcCCHHHHHHHHHHHHHHHHh---CCCcE-EEECCCHHHHHH
Confidence 47754 35555666667788999999999774 22222222 45666 55555544 24443 355578999999
Q ss_pred HHHcCCccccChh
Q psy15335 90 FVQRGIDMFDSGL 102 (552)
Q Consensus 90 aValGVDmFDcv~ 102 (552)
|++.|+|++=.+.
T Consensus 92 al~aGadiINDVs 104 (279)
T PRK13753 92 ALKRGVGYLNDIQ 104 (279)
T ss_pred HHHcCCCEEEeCC
Confidence 9999999875543
No 139
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=40.49 E-value=64 Score=34.86 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=52.1
Q ss_pred HHHHHHHcCCcceEEEccccCCCCCccccC-hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccChhH
Q psy15335 26 YCAELYATRDVHGFLIDGLCADEGATEDLG-CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~-~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv~P 103 (552)
+-|+.+.+.|++++++.+-. |.. ++ ..--.+.|.++.+.+....|.++ =||-+..+|+.++++|.|..=..-|
T Consensus 233 ~dA~~a~~~G~d~I~vsnhG--Gr~---ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~ 307 (351)
T cd04737 233 EDADVAINAGADGIWVSNHG--GRQ---LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRP 307 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCC--Ccc---CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 45566778899999996421 211 11 11123455666666666678887 4677999999999999997766667
Q ss_pred HHhh
Q psy15335 104 LVLA 107 (552)
Q Consensus 104 tr~A 107 (552)
..++
T Consensus 308 ~l~~ 311 (351)
T cd04737 308 VLYG 311 (351)
T ss_pred HHHH
Confidence 7765
No 140
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.01 E-value=1e+02 Score=32.94 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEc------cccCC-CCCccccChhHHHHHHHHhccCCCCCCcEee--cCCCCHHHHHH
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLID------GLCAD-EGATEDLGCDVVNAVLENTVPYLPNDKLRII--QGPWSPMNIVQ 89 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIG------Gl~v~-GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL--mGvG~P~dIl~ 89 (552)
+..+...+-++.|.+.|++.+=+| |.+.+ |.+. .+. .+.+..+.+.++..|-..+ .|.++..+|-.
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~--~~~---~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA--HTD---EEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC--CCH---HHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Confidence 567888889999999999988886 11111 2111 122 2344444455565554432 48999999999
Q ss_pred HHHcCCccc
Q psy15335 90 FVQRGIDMF 98 (552)
Q Consensus 90 aValGVDmF 98 (552)
+.+.|||.+
T Consensus 97 a~~~gvd~i 105 (337)
T PRK08195 97 AYDAGVRVV 105 (337)
T ss_pred HHHcCCCEE
Confidence 999999986
No 141
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=39.84 E-value=69 Score=34.05 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=48.6
Q ss_pred HHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 30 LYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 30 eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+..+.+.+.+.+. .|+.+++.+.+..+ +.....-.-|-=++..|.+..+.|||.+...++|..++
T Consensus 223 ea~~~gaDiI~LD----------n~s~e~~~~av~~~----~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galthsa~ 287 (296)
T PRK09016 223 QALKAGADIIMLD----------NFTTEQMREAVKRT----NGRALLEVSGNVTLETLREFAETGVDFISVGALTKHVQ 287 (296)
T ss_pred HHHHcCCCEEEeC----------CCChHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCC
Confidence 3445778888876 25567888888754 33344455676699999999999999999999887764
No 142
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.62 E-value=75 Score=33.66 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+.+.+++.+.+. .|+++++.+.++.+. .....-.-|-=++..|.+-...|||.+.+.++|..|+
T Consensus 213 a~~agaDiImLD----------nmspe~l~~av~~~~----~~~~leaSGGI~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 213 AAAAGADIIMLD----------NMSLEQIEQAITLIA----GRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred HHHcCCCEEEEC----------CCCHHHHHHHHHHhc----CceEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 445788888876 256788888887543 3344555777799999999999999999999887553
No 143
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.54 E-value=67 Score=31.29 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.1
Q ss_pred eecCCCCHHHHHHHHHcCCccccChhHH
Q psy15335 77 IIQGPWSPMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 77 yLmGvG~P~dIl~aValGVDmFDcv~Pt 104 (552)
++.|+.+|.++..+..+|+|.+=. +|+
T Consensus 108 ~i~G~~t~~e~~~A~~~Gadyv~~-Fpt 134 (187)
T PRK07455 108 IIPGALTPTEIVTAWQAGASCVKV-FPV 134 (187)
T ss_pred EEcCcCCHHHHHHHHHCCCCEEEE-CcC
Confidence 679999999999999999997653 554
No 144
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=39.45 E-value=23 Score=39.95 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=38.0
Q ss_pred CCcccccHHHHHHHHHhhccccCccccccC-C----ccchh-hccCCCCceecccc
Q psy15335 277 GKNELSNTSDIYSSMESDIHQSTHQEALII-N----TDDVA-SKSSEKDTLYTKSS 326 (552)
Q Consensus 277 G~lek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~----P~dIf-aValGvDtFDcv~p 326 (552)
|.+..++..++|..+++.+|.+.|.|+..= . ..-.+ |+++|+|.||++..
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~ 234 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 556677889999999999987888877543 2 11223 89999999998775
No 145
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=39.33 E-value=1e+02 Score=30.35 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmF 98 (552)
...+...+-++.|.+.|++.+-+|+... ....+. .++..+++..+.+..| +.+...|.-....++-.+.+.|+|.+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~-~~~~p~--~~~~~~~i~~l~~~~~-~~~~~~l~~~~~~~i~~a~~~g~~~i 91 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGAS-PKAVPQ--MEDDWEVLRAIRKLVP-NVKLQALVRNREKGIERALEAGVDEV 91 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcC-cccccc--CCCHHHHHHHHHhccC-CcEEEEEccCchhhHHHHHhCCcCEE
Confidence 4677888889999999999999998664 111111 2455777777777666 33443555555889999999998853
No 146
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=39.23 E-value=1.6e+02 Score=30.71 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccc
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmF 98 (552)
..+.|.+.+.+.+ .+| -|.+.-..+-|... .+ ..++.+.|..+++.. ++|..+ |||.+|+++-.+. .|.|-+
T Consensus 151 t~~~Ri~~i~~~a-~gF-iY~vs~~GvTG~~~-~~-~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGv 223 (259)
T PF00290_consen 151 TPEERIKKIAKQA-SGF-IYLVSRMGVTGSRT-EL-PDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGV 223 (259)
T ss_dssp S-HHHHHHHHHH--SSE-EEEESSSSSSSTTS-SC-HHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEE
T ss_pred CCHHHHHHHHHhC-CcE-EEeeccCCCCCCcc-cc-hHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEE
Confidence 4666766655543 355 44554444334332 22 578899999998888 999999 9999999999988 999943
No 147
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.09 E-value=1.1e+02 Score=30.72 Aligned_cols=37 Identities=14% Similarity=0.004 Sum_probs=24.5
Q ss_pred cCCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEc
Q psy15335 5 ALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLID 42 (552)
Q Consensus 5 ~Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIG 42 (552)
.|+...+++||-|- ..+.=.+-++.+.+.|++-+=|+
T Consensus 11 ~l~~~~~iaV~r~~-~~~~a~~i~~al~~~Gi~~iEit 47 (212)
T PRK05718 11 ILRAGPVVPVIVIN-KLEDAVPLAKALVAGGLPVLEVT 47 (212)
T ss_pred HHHHCCEEEEEEcC-CHHHHHHHHHHHHHcCCCEEEEe
Confidence 45666778887755 55555566677777666666665
No 148
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=39.01 E-value=1e+02 Score=32.07 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHH-HHHHHHcCCcc
Q psy15335 22 SLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMN-IVQFVQRGIDM 97 (552)
Q Consensus 22 DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~d-Il~aValGVDm 97 (552)
+..++.++.+.++|++||++|-|...| .++.+.+.++++.+. .+|-.==|-+==+-+|.. +-.++.+|||-
T Consensus 73 ~~M~~di~~~~~~GadGvV~G~L~~dg----~vD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~al~~l~~lG~~r 144 (248)
T PRK11572 73 AAMLEDIATVRELGFPGLVTGVLDVDG----HVDMPRMRKIMAAAG-PLAVTFHRAFDMCANPLNALKQLADLGVAR 144 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeECCCC----CcCHHHHHHHHHHhc-CCceEEechhhccCCHHHHHHHHHHcCCCE
Confidence 355667888889999999999887643 368889999998873 222211111111224544 44477788763
No 149
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.33 E-value=74 Score=33.29 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhh
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLA 107 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~A 107 (552)
..+.+.+.+.++- |..+++.+++.. ++...|....|-=+++.+.+..+.|+|.+-..++|..+
T Consensus 204 A~~~gaDyI~lD~----------~~~e~l~~~~~~----~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 204 AVAAGADIIMFDN----------RTPDEIREFVKL----VPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred HHHcCCCEEEECC----------CCHHHHHHHHHh----cCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 3457888888752 345566666654 33345666777679999999999999999999988755
No 150
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.25 E-value=82 Score=33.19 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred HcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 32 ATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 32 ~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
.+.|++.+.+. .|+.+++.+.+..+. .....-.-|-=++..|.+-...|||.+.+.++|..++
T Consensus 210 ~~~gaDiImLD----------n~s~e~l~~av~~~~----~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 210 LAAGVDTIMLD----------NFSLDDLREGVELVD----GRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred HhcCCCEEEEC----------CCCHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 34677777766 256778888887543 3345666787799999999999999999999887764
No 151
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=38.19 E-value=1.6e+02 Score=30.73 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=45.4
Q ss_pred HHHHHHcCCcceEEE--ccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC--CCCHHHHHHHHHcCCccccChh
Q psy15335 27 CAELYATRDVHGFLI--DGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG--PWSPMNIVQFVQRGIDMFDSGL 102 (552)
Q Consensus 27 SA~eL~~l~f~GyaI--GGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG--vG~P~dIl~aValGVDmFDcv~ 102 (552)
+.+.+.+.+++.+++ |-+++.-...+.++.+.+.++ .+.+ +.|..++| -=+++++..++..||+-+=...
T Consensus 158 a~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i----~~~~--~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 158 AKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEI----NDVV--HIPLVLHGGSGISPEDFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHH----HHhc--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhH
Confidence 344444567888888 877742211122334444444 4443 48999999 5589999999999999665544
Q ss_pred HH
Q psy15335 103 PL 104 (552)
Q Consensus 103 Pt 104 (552)
-.
T Consensus 232 ~i 233 (281)
T PRK06806 232 AT 233 (281)
T ss_pred HH
Confidence 33
No 152
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=37.87 E-value=92 Score=33.64 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCcceEEEcccc-C-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEee
Q psy15335 25 RYCAELYATRDVHGFLIDGLC-A-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII 78 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~-v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL 78 (552)
.++|+.+.+.||+|+=|=+-+ . .|.+.+. ...-+.+||+.+++.++++-|.-+
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslen-R~rf~~eii~~vr~~~g~~f~v~v 223 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLEN-RLRFAIEIVEEIKARCGEDFPVSL 223 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHH-HhHHHHHHHHHHHHhcCCCceEEE
Confidence 457788888999999663322 1 1222221 235678999999999988866554
No 153
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.77 E-value=2.5e+02 Score=29.52 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCcceEEEccccC--------------CCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHH
Q psy15335 22 SLRRYCAELYATRDVHGFLIDGLCA--------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMN 86 (552)
Q Consensus 22 DLR~~SA~eL~~l~f~GyaIGGl~v--------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~d 86 (552)
+.-.+-++.+.+.|++|+.+-+-.. .|-+... .+..-.+.+..+.+.++.+.|....| |-++++
T Consensus 216 ~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~-~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~d 294 (327)
T cd04738 216 EELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP-LKERSTEVLRELYKLTGGKIPIIGVGGISSGED 294 (327)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChh-hhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH
Confidence 3445667778888999999643110 0000000 01223566777777787777877654 779999
Q ss_pred HHHHHHcCCccccChhHHH
Q psy15335 87 IVQFVQRGIDMFDSGLPLV 105 (552)
Q Consensus 87 Il~aValGVDmFDcv~Ptr 105 (552)
+.+++..|.|++-...+..
T Consensus 295 a~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 295 AYEKIRAGASLVQLYTGLV 313 (327)
T ss_pred HHHHHHcCCCHHhccHHHH
Confidence 9999999999887776654
No 154
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=37.64 E-value=1e+02 Score=29.31 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=44.9
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccC
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDS 100 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDc 100 (552)
+.+..+.+++.+.+|.+-. +...+......-.+.+.++++.++ +.|.+..|-=++.++..+.+.|+|.|=.
T Consensus 117 ~~~a~~~gaD~v~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFP-TPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGITPENAPEVLEAGADGVAV 187 (212)
T ss_pred HHHHhHcCCCEEEECCccC-CCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 3444567899998886553 211111000001445555555553 4899999866999999999999997743
No 155
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=37.33 E-value=1.2e+02 Score=34.05 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=63.1
Q ss_pred eEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCC--CCcEeec-----CCC
Q psy15335 11 VIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN--DKLRIIQ-----GPW 82 (552)
Q Consensus 11 LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~--dKPRyLm-----GvG 82 (552)
.|+.-.++ ..++.-.+.++.+.+.|.+.+.|--.. ..+.+.++.+++..+++.+|. +.|.-++ |.+
T Consensus 134 ~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv------G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlA 207 (494)
T TIGR00973 134 EFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTV------GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLA 207 (494)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC------CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChH
Confidence 34444443 677888888888889999988876333 345789999999999998875 3455442 433
Q ss_pred CHHHHHHHHHcCCccccChhH
Q psy15335 83 SPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 83 ~P~dIl~aValGVDmFDcv~P 103 (552)
-...+.|+..|+|.||++.-
T Consensus 208 -vANalaAv~aGa~~vd~tv~ 227 (494)
T TIGR00973 208 -VANSLAAVQNGARQVECTIN 227 (494)
T ss_pred -HHHHHHHHHhCCCEEEEEee
Confidence 46788899999999999864
No 156
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.23 E-value=75 Score=31.07 Aligned_cols=64 Identities=9% Similarity=-0.051 Sum_probs=40.3
Q ss_pred HHHHcCCcceEEEc--cccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccc
Q psy15335 29 ELYATRDVHGFLID--GLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 29 ~eL~~l~f~GyaIG--Gl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmF 98 (552)
+.+.+.|++.+.++ |+.. .... ......+.+..+.+.+ +.|... .|+.+|.++..+.++|.|.+
T Consensus 133 ~~a~~~G~d~i~~~~~g~t~--~~~~--~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 133 LAAQKLGFDFIGTTLSGYTE--ETKK--PEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAV 199 (221)
T ss_pred HHHHHcCCCEEEcCCceeec--CCCC--CCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 45667788887664 3321 1100 1112244555555555 578776 78889999999999999865
No 157
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=36.80 E-value=1.2e+02 Score=31.87 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cC----
Q psy15335 23 LRRYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QG---- 80 (552)
Q Consensus 23 LR~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mG---- 80 (552)
.-.++|+.+.+.||+|+=|=+-+. .|.+.+. ..+.+.++|+.+++.++++.|.-+ +.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~n-r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~ 233 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLEN-RMRFLLEVVDAVRAVWPEDKPLFVRISATDW 233 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHH-HhHHHHHHHHHHHHHcCCCceEEEEEccccc
Confidence 445678888889999998754220 1222111 246678999999999999988776 33
Q ss_pred ---CCCHHHHHH----HHHcCCccccCh
Q psy15335 81 ---PWSPMNIVQ----FVQRGIDMFDSG 101 (552)
Q Consensus 81 ---vG~P~dIl~----aValGVDmFDcv 101 (552)
-.++.+.+. +.+.|+|.|+.+
T Consensus 234 ~~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 234 VEGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 235654433 345789988754
No 158
>PRK07094 biotin synthase; Provisional
Probab=36.04 E-value=2e+02 Score=29.63 Aligned_cols=84 Identities=10% Similarity=0.003 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEe-ecCCCCHHHHHHHHHcCCcc-
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRI-IQGPWSPMNIVQFVQRGIDM- 97 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRy-LmGvG~P~dIl~aValGVDm- 97 (552)
.++.-.+-++.+.+.++..+.|.| |++. .++.+.+.++++.+.+. + +-... -.|.-+++.+-.+.+.|+|.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~g----G~~~-~~~~~~l~~l~~~i~~~-~-~l~i~~~~g~~~~e~l~~Lk~aG~~~v 143 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQS----GEDP-YYTDEKIADIIKEIKKE-L-DVAITLSLGERSYEEYKAWKEAGADRY 143 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec----CCCC-CCCHHHHHHHHHHHHcc-C-CceEEEecCCCCHHHHHHHHHcCCCEE
Confidence 345455566777788999998863 3321 23567888888888775 2 22223 25666789999999999996
Q ss_pred ---ccChhHHHhhccC
Q psy15335 98 ---FDSGLPLVLADRG 110 (552)
Q Consensus 98 ---FDcv~Ptr~AR~G 110 (552)
+|+..+..+.+-+
T Consensus 144 ~~glEs~~~~~~~~i~ 159 (323)
T PRK07094 144 LLRHETADKELYAKLH 159 (323)
T ss_pred EeccccCCHHHHHHhC
Confidence 4666666665544
No 159
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=35.74 E-value=2.5e+02 Score=27.15 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCCcceEEEccccC--------CCCCccccChhHHHHHHHHhccCCCCCCcEee---cC
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCA--------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII---QG 80 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v--------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL---mG 80 (552)
+.+.-+|..++.=.++|+.+.+.||+|+=|-.-++ .|..... +.+.+.++|+.+++.++ .|.-+ .|
T Consensus 57 ~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~-~~~~~~eii~~v~~~~~--~~v~vk~r~~ 133 (231)
T cd02801 57 LIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLK-DPELVAEIVRAVREAVP--IPVTVKIRLG 133 (231)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcC-CHHHHHHHHHHHHHhcC--CCEEEEEeec
Confidence 33444555777778899999999999998742221 0111111 46778899999888876 44443 23
Q ss_pred CCC---HHHHH-HHHHcCCccccC
Q psy15335 81 PWS---PMNIV-QFVQRGIDMFDS 100 (552)
Q Consensus 81 vG~---P~dIl-~aValGVDmFDc 100 (552)
... ...++ .+.+.|+|.+-.
T Consensus 134 ~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 134 WDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred cCCchHHHHHHHHHHHhCCCEEEE
Confidence 222 22332 345678888753
No 160
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.34 E-value=97 Score=32.94 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=48.6
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+.+.|.+.+.+. .|+++++.+.+..+ +.....-.-|-=++..|.+-.+.|||.+...++|..++
T Consensus 221 A~~aGaDiImLD----------nmspe~l~~av~~~----~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 221 ALAHGAQSVLLD----------NFTLDMMREAVRVT----AGRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred HHHcCCCEEEEC----------CCCHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 445788888876 25677888877754 33334555777799999999999999999999887764
No 161
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=35.20 E-value=2.6e+02 Score=30.76 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCcc------ccChhHHHHHHHHhccCCCCCCcEee-c
Q psy15335 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATE------DLGCDVVNAVLENTVPYLPNDKLRII-Q 79 (552)
Q Consensus 7 k~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~------~m~~eem~~iL~~v~~~LP~dKPRyL-m 79 (552)
.+..+++-|-|+...+-=.+.++.+.+.+.+++-+-=.++++.+.. ..+++.+.+++.++.... ++|..+ +
T Consensus 112 ~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~--~iPv~vKL 189 (385)
T PLN02495 112 PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA--TVPVWAKM 189 (385)
T ss_pred CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh--cCceEEEe
Confidence 3568899999989999999999999998899988753333332111 124677888888887664 578776 4
Q ss_pred CC--CCHHHHHH-HHHcCCc
Q psy15335 80 GP--WSPMNIVQ-FVQRGID 96 (552)
Q Consensus 80 Gv--G~P~dIl~-aValGVD 96 (552)
+. -++..++. |.+.|+|
T Consensus 190 sPn~t~i~~ia~aa~~~Gad 209 (385)
T PLN02495 190 TPNITDITQPARVALKSGCE 209 (385)
T ss_pred CCChhhHHHHHHHHHHhCCC
Confidence 42 34444555 4556665
No 162
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=34.69 E-value=1.4e+02 Score=31.15 Aligned_cols=81 Identities=9% Similarity=-0.118 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCcc-eEEEccccCCCCCcc-ccChhHHHHHHHHhccCCC-CCCcEeecCC----CCHHHHHHHHHcCC
Q psy15335 23 LRRYCAELYATRDVH-GFLIDGLCADEGATE-DLGCDVVNAVLENTVPYLP-NDKLRIIQGP----WSPMNIVQFVQRGI 95 (552)
Q Consensus 23 LR~~SA~eL~~l~f~-GyaIGGl~v~GE~~~-~m~~eem~~iL~~v~~~LP-~dKPRyLmGv----G~P~dIl~aValGV 95 (552)
.=.+-++...+.|.+ -+.|.-..+.+-|.. .|.++++.+++..+++.++ ++.|.-++.- -.....+.|+..|+
T Consensus 150 ~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~ 229 (279)
T cd07947 150 FVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGA 229 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCC
Confidence 344455555557888 677764442222211 1225788899998887743 3344444322 23678899999999
Q ss_pred ccccChhH
Q psy15335 96 DMFDSGLP 103 (552)
Q Consensus 96 DmFDcv~P 103 (552)
|.||++.-
T Consensus 230 ~~vd~sv~ 237 (279)
T cd07947 230 SWVNCTLL 237 (279)
T ss_pred CEEEEecc
Confidence 99999864
No 163
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.57 E-value=1.1e+02 Score=31.38 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cCC---
Q psy15335 23 LRRYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGP--- 81 (552)
Q Consensus 23 LR~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGv--- 81 (552)
.-.++|+.+.+.||+|+=|=+-+. .|.+.+. ...-+.++|+.+++.++++.|..+ +..
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~en-r~r~~~eii~avr~~~g~d~~i~vris~~~~ 220 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLEN-RARFLLEIVAAVREAVGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHH-HHHHHHHHHHHHHHHcCCCceEEEEechhcc
Confidence 345688888889999997754321 1111111 134568999999999998888765 332
Q ss_pred ----CCHHHHH----HHHHcCCccccChh
Q psy15335 82 ----WSPMNIV----QFVQRGIDMFDSGL 102 (552)
Q Consensus 82 ----G~P~dIl----~aValGVDmFDcv~ 102 (552)
.++.+.+ .+...|+|.++.+.
T Consensus 221 ~~~g~~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 221 VPGGLTLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 2455533 56668999988643
No 164
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.51 E-value=1.4e+02 Score=31.83 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEc---cc---cCC-CCCccccChhHHHHHHHHhccCCCCCCcEee--cCCCCHHHHHH
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLID---GL---CAD-EGATEDLGCDVVNAVLENTVPYLPNDKLRII--QGPWSPMNIVQ 89 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIG---Gl---~v~-GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL--mGvG~P~dIl~ 89 (552)
+..+...+=++.|.+.|++-+=+| || +.+ |.+. .-+.+ .+..+.+.++..|...+ .|.|+..++-.
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e----~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLE----YIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHH----HHHHHHHhCCCCEEEEEeccCccCHHHHHH
Confidence 567778888999999999988886 11 111 1111 11223 33344445565555433 48999999999
Q ss_pred HHHcCCcccc
Q psy15335 90 FVQRGIDMFD 99 (552)
Q Consensus 90 aValGVDmFD 99 (552)
|.+.|||++=
T Consensus 96 a~~~gvd~ir 105 (333)
T TIGR03217 96 AYDAGARTVR 105 (333)
T ss_pred HHHCCCCEEE
Confidence 9999999864
No 165
>KOG2368|consensus
Probab=34.29 E-value=62 Score=33.88 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=74.0
Q ss_pred EEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCc-EeecC-CC-CHHHHH
Q psy15335 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKL-RIIQG-PW-SPMNIV 88 (552)
Q Consensus 12 fGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKP-RyLmG-vG-~P~dIl 88 (552)
=++.+|...+.--.+-+++|-+||.--+.+|-.-.-| .+..|.+||+.+++.+|.++. .|.+- -| .-..|+
T Consensus 159 GCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvG------Tpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL 232 (316)
T KOG2368|consen 159 GCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVG------TPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANIL 232 (316)
T ss_pred cCCccCCcCHHHHHHHHHHHHhCCcEEEecccccccC------CchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHH
Confidence 3578999999999999999999998777776433222 256789999999999998875 34322 12 367899
Q ss_pred HHHHcCCccccChh------HHHhhccCeEEeecccc
Q psy15335 89 QFVQRGIDMFDSGL------PLVLADRGCAFTFQYTR 119 (552)
Q Consensus 89 ~aValGVDmFDcv~------Ptr~AR~G~aLTf~~t~ 119 (552)
-+..+||-..||+. ||-.+-.|.+-|.+..|
T Consensus 233 ~slqmGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvY 269 (316)
T KOG2368|consen 233 VSLQMGIRVVDSSVAGLGGCPYAKGASGNLATEDLVY 269 (316)
T ss_pred HHHHhcceehhhhccccCCCCccccCCCCchHHHHHH
Confidence 99999999999985 44444445544444433
No 166
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=34.16 E-value=1.7e+02 Score=28.65 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=50.1
Q ss_pred eccCCCH--HHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHH
Q psy15335 15 IQGGLDL--SLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFV 91 (552)
Q Consensus 15 VQGG~~~--DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aV 91 (552)
++|+... ..-.+-++++.+.+++.+.+-.+...|.... .+ .+++..+++. .+.|... -|+.+++++..+.
T Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~----~~~i~~i~~~--~~ipvia~GGi~~~~di~~~~ 208 (230)
T TIGR00007 136 VKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG-PN----FELTKELVKA--VNVPVIASGGVSSIDDLIALK 208 (230)
T ss_pred EcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC-CC----HHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHH
Confidence 4666432 1223567778889999999877664332111 12 4444444444 3467666 7799999999999
Q ss_pred HcCCccccC
Q psy15335 92 QRGIDMFDS 100 (552)
Q Consensus 92 alGVDmFDc 100 (552)
+.|+|-+=.
T Consensus 209 ~~Gadgv~i 217 (230)
T TIGR00007 209 KLGVYGVIV 217 (230)
T ss_pred HCCCCEEEE
Confidence 999995433
No 167
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=33.80 E-value=85 Score=34.93 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=40.4
Q ss_pred HHHHHHHcCCcceEEEccccCCC-CCcccc-Ch-hHHHHHHHHhccCCC-CCCcEeec--CCCCHHHHHHHHHcCCccc
Q psy15335 26 YCAELYATRDVHGFLIDGLCADE-GATEDL-GC-DVVNAVLENTVPYLP-NDKLRIIQ--GPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~G-E~~~~m-~~-eem~~iL~~v~~~LP-~dKPRyLm--GvG~P~dIl~aValGVDmF 98 (552)
+.++.+.+.|++++.+|+ .+.. ..+..+ .. ......|..+.+... .+.| .+. |+-+|.+|+.|.++|.|..
T Consensus 281 e~a~~l~~aGad~i~vg~-g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~-viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 281 EAARALIEAGADAVKVGI-GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIP-VIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred HHHHHHHHcCCCEEEECC-CCCccccceeecCCCcCHHHHHHHHHHHhccCCCe-EEEcCCCCCHHHHHHHHHhCCCEE
Confidence 456667788999999875 2100 001111 00 001223333333322 2455 446 8999999999999999954
No 168
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=33.68 E-value=1.7e+02 Score=27.71 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=39.0
Q ss_pred cceEEEccccCCCCCccccChhHHHHHHHHhccCCC---CCCcEeecCCCCHHHHHHHHHcCCccccChhHH
Q psy15335 36 VHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLP---NDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 36 f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP---~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Pt 104 (552)
.+.+.++++.+ |..-+.++ ....+.+..+++..+ .+.|..+-|-=+|+.+.+++..|+|.|=..++.
T Consensus 128 ~d~i~~~~~~~-g~tg~~~~-~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai 197 (211)
T cd00429 128 VDLVLVMSVNP-GFGGQKFI-PEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSAL 197 (211)
T ss_pred CCEEEEEEECC-CCCCcccC-HHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHH
Confidence 46666776643 22212222 233444554444433 356887755335899999999999977555544
No 169
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.55 E-value=1.8e+02 Score=28.32 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=44.6
Q ss_pred HHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccCh
Q psy15335 27 CAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSG 101 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv 101 (552)
-++.+.+.+++++.+-++...|.... .+ .+++..+++.. +.|.+. -|+.++.++..+.+.|+|-+=..
T Consensus 151 ~~~~~~~~ga~~iii~~~~~~g~~~g-~~----~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 151 LAKRFEELGVKAIIYTDISRDGTLSG-PN----FELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHcCCCEEEEEeecCCCccCC-CC----HHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 46667788999999987653222111 12 34444444433 467665 66999999999999999965433
No 170
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=33.46 E-value=1.5e+02 Score=30.30 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=54.6
Q ss_pred ccCCC--HHHHHHHHHHHHcCCcceEEEccccCCCCCccccC-hhH---HHHHHHHhccCCCCCCcEeecCCCCHHHHHH
Q psy15335 16 QGGLD--LSLRRYCAELYATRDVHGFLIDGLCADEGATEDLG-CDV---VNAVLENTVPYLPNDKLRIIQGPWSPMNIVQ 89 (552)
Q Consensus 16 QGG~~--~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~-~ee---m~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~ 89 (552)
-||.+ ++.-.+-|++..+.|.+.+=|||.+.+ ......+ .+| +..+|+.+.+.. +.|.- .=-.+|..+-.
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~-p~~~~i~~~~E~~rl~~~v~~~~~~~--~~pls-iDT~~~~vi~~ 90 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTR-PGADRVSPEEELNRVVPVIKALRDQP--DVPIS-VDTYRAEVARA 90 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhcC--CCeEE-EeCCCHHHHHH
Confidence 46643 344445566667889999999986641 1122222 234 555555554333 66754 55689999999
Q ss_pred HHHcCCccccChhHH
Q psy15335 90 FVQRGIDMFDSGLPL 104 (552)
Q Consensus 90 aValGVDmFDcv~Pt 104 (552)
|++.|+|++-++...
T Consensus 91 al~~G~~iINsis~~ 105 (257)
T TIGR01496 91 ALEAGADIINDVSGG 105 (257)
T ss_pred HHHcCCCEEEECCCC
Confidence 999999998876543
No 171
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.07 E-value=3.8e+02 Score=27.46 Aligned_cols=86 Identities=8% Similarity=-0.007 Sum_probs=59.5
Q ss_pred CceEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccc---------------cChhHHHHHHHHhccCCCC
Q psy15335 9 TCVIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATED---------------LGCDVVNAVLENTVPYLPN 72 (552)
Q Consensus 9 q~LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~---------------m~~eem~~iL~~v~~~LP~ 72 (552)
.++++-+.-| -+.+-=.+.++.+.+.|++.+=|| +.- .+|... ++.++..+++..+++.. .
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElG-iPf-sDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~-~ 86 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELG-VPF-SDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH-P 86 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCC-CCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-C
Confidence 4677777766 355556778899999999999998 321 122110 23356778888877653 2
Q ss_pred CCcEeecCCCCH-------HHHHHHHHcCCcc
Q psy15335 73 DKLRIIQGPWSP-------MNIVQFVQRGIDM 97 (552)
Q Consensus 73 dKPRyLmGvG~P-------~dIl~aValGVDm 97 (552)
+.|..+|+...| ..+-.+.+.|+|.
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdg 118 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDG 118 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCE
Confidence 578889999998 4577888889874
No 172
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=33.00 E-value=1.2e+02 Score=30.39 Aligned_cols=42 Identities=12% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhc
Q psy15335 22 SLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTV 67 (552)
Q Consensus 22 DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~ 67 (552)
+..++.++.+.++|.+||++|-|...|+ ++.+.+.++++.+.
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L~~dg~----iD~~~~~~Li~~a~ 113 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGALTEDGE----IDEEALEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BETTSS----B-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeEEEeECCCCC----cCHHHHHHHHHhcC
Confidence 3566788889999999999998876443 68888899988765
No 173
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=32.92 E-value=1.5e+02 Score=32.21 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCcc
Q psy15335 55 GCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDM 97 (552)
Q Consensus 55 ~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDm 97 (552)
+++-+..+++. .+-|..+ -|+|+|.++..++++|.|-
T Consensus 237 ~p~~i~~~~e~------~~vpVivdAGIg~~sda~~AmelGadg 274 (326)
T PRK11840 237 NPYTIRLIVEG------ATVPVLVDAGVGTASDAAVAMELGCDG 274 (326)
T ss_pred CHHHHHHHHHc------CCCcEEEeCCCCCHHHHHHHHHcCCCE
Confidence 56666666665 3477766 8999999999999999993
No 174
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=32.38 E-value=1.4e+02 Score=27.53 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhH
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~P 103 (552)
++++.+.+++.+.++.+-+ +..-+......-.+.+..+++. .+.|.++.|--++..+..+...|+|.|-....
T Consensus 108 ~~~~~~~g~d~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~ 180 (196)
T cd00564 108 ALRAEELGADYVGFGPVFP-TPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGITPENAAEVLAAGADGVAVISA 180 (196)
T ss_pred HHHHhhcCCCEEEECCccC-CCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCCCHHHHHHHHHcCCCEEEEehH
Confidence 4455567899999875432 1100000000112333333333 45899998877899999999999997755443
No 175
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=32.10 E-value=1.2e+02 Score=32.23 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=51.3
Q ss_pred HHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHHhhc
Q psy15335 30 LYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 30 eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+..+.+.+-..+. +|+++++.+.++.. .++...-.=.-|==+|..|..-...|||.|-..++|..++
T Consensus 203 eAl~agaDiImLD----------Nm~~e~~~~av~~l--~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 203 EALEAGADIIMLD----------NMSPEELKEAVKLL--GLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred HHHHcCCCEEEec----------CCCHHHHHHHHHHh--ccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCCc
Confidence 3445678888876 26678888888876 4444444445787799999999999999999999987765
No 176
>PRK00915 2-isopropylmalate synthase; Validated
Probab=31.80 E-value=1.8e+02 Score=32.90 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=64.4
Q ss_pred ceEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCC--CCcEeec-----CC
Q psy15335 10 CVIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN--DKLRIIQ-----GP 81 (552)
Q Consensus 10 ~LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~--dKPRyLm-----Gv 81 (552)
..|++--++ ..++.-.+.++.+.+.|.+.+.|.-. ...+.++++.+++..+++.+|. +.|.-++ |.
T Consensus 136 v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DT------vG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~Gl 209 (513)
T PRK00915 136 VEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDT------VGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGL 209 (513)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccC------CCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCH
Confidence 345555555 56788888888899999988887633 3345789999999999988874 2455442 33
Q ss_pred CCHHHHHHHHHcCCccccChhH
Q psy15335 82 WSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 82 G~P~dIl~aValGVDmFDcv~P 103 (552)
+ ....+.|+..|+|.+|++.-
T Consensus 210 A-vANslaAv~aGa~~Vd~Tv~ 230 (513)
T PRK00915 210 A-VANSLAAVEAGARQVECTIN 230 (513)
T ss_pred H-HHHHHHHHHhCCCEEEEEee
Confidence 3 56788999999999999864
No 177
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=31.47 E-value=1.5e+02 Score=33.56 Aligned_cols=78 Identities=8% Similarity=-0.092 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC----CHHHHHHHHHcC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW----SPMNIVQFVQRG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG----~P~dIl~aValG 94 (552)
..++.-.+.++.+.+.|.+-+.|.-. +..+.+.++.+++..+++.+ +.|.-+++-- .....+.|+..|
T Consensus 155 ~d~~~l~~~~~~~~~~Gad~i~l~DT------vG~~~P~~v~~li~~l~~~~--~v~i~~H~HND~GlA~ANslaAi~aG 226 (524)
T PRK12344 155 ANPEYALATLKAAAEAGADWVVLCDT------NGGTLPHEVAEIVAEVRAAP--GVPLGIHAHNDSGCAVANSLAAVEAG 226 (524)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEccC------CCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCChHHHHHHHHHHhC
Confidence 45777778888888999998887633 33457899999999998887 4566554321 245778899999
Q ss_pred CccccChhHH
Q psy15335 95 IDMFDSGLPL 104 (552)
Q Consensus 95 VDmFDcv~Pt 104 (552)
+|.+|++.-=
T Consensus 227 a~~Vd~Tl~G 236 (524)
T PRK12344 227 ARQVQGTING 236 (524)
T ss_pred CCEEEEeccc
Confidence 9999998743
No 178
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=31.40 E-value=1.5e+02 Score=32.47 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCccccC--hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccCh
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATEDLG--CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSG 101 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~--~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv 101 (552)
.+-|+.+.+.|++|+.+++-. |. .++ +.. .+.|.++.+.+....|.++ =||-++.||+.+.++|.|..=..
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HG--Gr---q~~~~~a~-~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHG--GR---QLDGGPAA-FDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcC--cc---CCCCCCcH-HHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEc
Confidence 456777888999999998643 22 122 111 2344444455555678887 67789999999999999998888
Q ss_pred hHHHhh
Q psy15335 102 LPLVLA 107 (552)
Q Consensus 102 ~Ptr~A 107 (552)
-|.+++
T Consensus 313 R~~l~~ 318 (367)
T TIGR02708 313 RPVIYG 318 (367)
T ss_pred HHHHHH
Confidence 887775
No 179
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.10 E-value=2e+02 Score=26.84 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhccCCCCCCcEeecCCC------CHHHHHHHHHcCCc-cccChh
Q psy15335 56 CDVVNAVLENTVPYLPNDKLRIIQGPW------SPMNIVQFVQRGID-MFDSGL 102 (552)
Q Consensus 56 ~eem~~iL~~v~~~LP~dKPRyLmGvG------~P~dIl~aValGVD-mFDcv~ 102 (552)
...+.++++.+.+..+++.+.++=|.- .+.+...+-++|+| +|+...
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 456788888888886767655544432 23566789999998 777443
No 180
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.48 E-value=1.3e+02 Score=30.27 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=58.4
Q ss_pred ccCCCCceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCC
Q psy15335 4 KALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWS 83 (552)
Q Consensus 4 e~Lk~q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~ 83 (552)
+.|..+.+++||-+- ..+.=.+-++.|.+.|+.-+=|- |+...-.+.|+.+.+.. +++|..++|+|+
T Consensus 8 ~~l~~~~vi~vir~~-~~~~a~~~~~al~~~Gi~~iEit-----------~~~~~a~~~i~~l~~~~-~~~p~~~vGaGT 74 (213)
T PRK06552 8 TKLKANGVVAVVRGE-SKEEALKISLAVIKGGIKAIEVT-----------YTNPFASEVIKELVELY-KDDPEVLIGAGT 74 (213)
T ss_pred HHHHHCCEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEE-----------CCCccHHHHHHHHHHHc-CCCCCeEEeeee
Confidence 456778899999988 55555566777888788777664 12333456666666655 344668899995
Q ss_pred ---HHHHHHHHHcCCccc
Q psy15335 84 ---PMNIVQFVQRGIDMF 98 (552)
Q Consensus 84 ---P~dIl~aValGVDmF 98 (552)
++++-.++++|.+.+
T Consensus 75 V~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 75 VLDAVTARLAILAGAQFI 92 (213)
T ss_pred CCCHHHHHHHHHcCCCEE
Confidence 899999999999854
No 181
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=30.40 E-value=2.1e+02 Score=28.08 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHH-HHHcCCccccC
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQ-FVQRGIDMFDS 100 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~-aValGVDmFDc 100 (552)
.+-++.+.+.|++.+.+-++...|.. ...-.+++..+++.+ +.|.+.-| +.++.++.. +-..|+|.+=.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~-----~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTM-----KGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCc-----CCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 35667788899999999987652211 111255555555554 57888765 788999999 77789997643
No 182
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=29.81 E-value=1.2e+02 Score=32.42 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=37.3
Q ss_pred hHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHHHHHcCCccccChhHHH
Q psy15335 57 DVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQFVQRGIDMFDSGLPLV 105 (552)
Q Consensus 57 eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~aValGVDmFDcv~Ptr 105 (552)
.--.++|..+.+.++.+-|..-.| |-+++++.+++..|.|+.-......
T Consensus 272 p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~ 321 (335)
T TIGR01036 272 DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFI 321 (335)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHH
Confidence 345667777777787778877554 8899999999999999876655543
No 183
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.39 E-value=81 Score=31.73 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccChhH
Q psy15335 56 CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 56 ~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv~P 103 (552)
...+.+.+..+++..+ ++|..+ +||-+|.++-.+++.|+|.|=.-+.
T Consensus 169 ~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 169 PVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred hHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 4556777777777765 567665 7777999999999999998754443
No 184
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=2e+02 Score=30.58 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=48.8
Q ss_pred ceEEeeccCCCHHHHHHHHHHHHcCCcceEEEc-ccc------CCCCCccccChhHHHHHHHHhccCCCCCCcEee
Q psy15335 10 CVIAPIQGGLDLSLRRYCAELYATRDVHGFLID-GLC------ADEGATEDLGCDVVNAVLENTVPYLPNDKLRII 78 (552)
Q Consensus 10 ~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIG-Gl~------v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL 78 (552)
..+++.-+|.+++.-.++|+.+.+.+++++=|= |-. .+..+....+++.+.++|+++.+.++ +.|.-+
T Consensus 67 ~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTV 141 (323)
T COG0042 67 RPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTV 141 (323)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEE
Confidence 347888899999999999999999987765441 000 00112222368899999999999998 777665
No 185
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=28.46 E-value=1.6e+02 Score=30.10 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=39.8
Q ss_pred HHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCcccc
Q psy15335 31 YATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 31 L~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFD 99 (552)
+.+.+++.+.+.+... .+...+ .+.+..+.+.+|.+.|... -|+.+|.++..+..+|+|.|=
T Consensus 176 A~~~gadiIgin~rdl---~~~~~d----~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 176 ALKLGAPLIGINNRNL---KTFEVD----LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVL 238 (260)
T ss_pred HHHcCCCEEEECCCCc---ccccCC----HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 3456788777764221 111112 3344555566777767665 577799999999999999773
No 186
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=28.36 E-value=1.9e+02 Score=29.66 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHcCCcceEEEccccC---CC-CCccccChhHHHHHHHHhccCCCCCCcEee---cCCC-CHHHH----HHHHHcC
Q psy15335 27 CAELYATRDVHGFLIDGLCA---DE-GATEDLGCDVVNAVLENTVPYLPNDKLRII---QGPW-SPMNI----VQFVQRG 94 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v---~G-E~~~~m~~eem~~iL~~v~~~LP~dKPRyL---mGvG-~P~dI----l~aValG 94 (552)
||+.+.+.||+.+.+||... .| +.+..+..++|...+..++...| ..|... +|.| .|.++ -.+++.|
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-~~pviaD~~~G~g~~~~~~~~~~~~l~~aG 102 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-LALIVADLPFGAYGAPTAAFELAKTFMRAG 102 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CCCEEEeCCCCCCcCHHHHHHHHHHHHHcC
Confidence 67778888999999998762 12 33445678899999888887664 346555 6767 44774 4566778
Q ss_pred Cccc
Q psy15335 95 IDMF 98 (552)
Q Consensus 95 VDmF 98 (552)
++.+
T Consensus 103 a~gv 106 (240)
T cd06556 103 AAGV 106 (240)
T ss_pred CcEE
Confidence 8643
No 187
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=28.29 E-value=1.2e+02 Score=32.52 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCC----------CCcEe
Q psy15335 25 RYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPN----------DKLRI 77 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~----------dKPRy 77 (552)
.++|+.+.+.||+|.=|=|-+. .|.+.+. ...-+.+||+.+++.+++ +..-.
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslEN-R~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVEN-RARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHH-HHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Q ss_pred ecCCCCHHH-----HHHHHHcCCccccChhH
Q psy15335 78 IQGPWSPMN-----IVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 78 LmGvG~P~d-----Il~aValGVDmFDcv~P 103 (552)
.-|--++++ +-.+.+.|||+++.+.+
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
No 188
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=28.21 E-value=3.8e+02 Score=24.63 Aligned_cols=79 Identities=8% Similarity=-0.087 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee---cCC-CCHHHHHHH----HH
Q psy15335 21 LSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII---QGP-WSPMNIVQF----VQ 92 (552)
Q Consensus 21 ~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL---mGv-G~P~dIl~a----Va 92 (552)
.+.-.+.++++.+.|+++..+-.... -.+. -+.+.+.+.+..+.+..+.+.|.++ .+. .+|+.+..+ ..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~ 140 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG-SLKE--GDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE 140 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH-HHhC--CCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78888889999999999999853221 0000 0145566666666655444666554 222 267777765 46
Q ss_pred cCCccccChh
Q psy15335 93 RGIDMFDSGL 102 (552)
Q Consensus 93 lGVDmFDcv~ 102 (552)
.|+|.+..+.
T Consensus 141 ~g~~~iK~~~ 150 (201)
T cd00945 141 AGADFIKTST 150 (201)
T ss_pred hCCCEEEeCC
Confidence 8999886444
No 189
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=28.20 E-value=1.1e+02 Score=29.23 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmF 98 (552)
++++.+.+++.+.+|=+-. ..+.+.. ...=.+.+.+.+...+ .|.+.+|-=+|.++..+.+.|+|.+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~-T~sk~~~-~~~g~~~l~~~~~~~~--~pv~AlGGI~~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFP-TSSKPGA-PPLGLDGLREIARASP--IPVYALGGITPENIPELREAGADGV 174 (180)
T ss_dssp HHHHHHCTTSEEEEETSS---SSSSS--TTCHHHHHHHHHHHTS--SCEEEESS--TTTHHHHHHTT-SEE
T ss_pred HHHhhhcCCCEEEECCccC-CCCCccc-cccCHHHHHHHHHhCC--CCEEEEcCCCHHHHHHHHHcCCCEE
Confidence 6666678999999996642 1111111 1111233344444444 9999999889999999999999865
No 190
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=28.18 E-value=54 Score=32.13 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHH----cC
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQ----RG 94 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aVa----lG 94 (552)
+..+...+-++.|.+.|++.+=+|-... .++-.+.+..+.+.++. ...-.+.-..+.++-.++. .|
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~---------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFA---------SEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTS---------SHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEccccc---------CHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhcc
Confidence 4567778889999999999999992111 12223344444444444 3333355567888888777 89
Q ss_pred CccccC
Q psy15335 95 IDMFDS 100 (552)
Q Consensus 95 VDmFDc 100 (552)
+|.|..
T Consensus 81 ~~~i~i 86 (237)
T PF00682_consen 81 IDIIRI 86 (237)
T ss_dssp SSEEEE
T ss_pred CCEEEe
Confidence 885543
No 191
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.16 E-value=3.1e+02 Score=28.55 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=57.7
Q ss_pred ceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccC-------CCCCccccChhHHHHHHHHhccCCCCCCcEee-c--
Q psy15335 10 CVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCA-------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-Q-- 79 (552)
Q Consensus 10 ~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v-------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-m-- 79 (552)
..+++--+|.+++.=.++|+.+.+.||+|+=|-.-++ ++.+...-+.+.+.++|+.+++.++ .|..+ +
T Consensus 63 ~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~ 140 (319)
T TIGR00737 63 TPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRI 140 (319)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEc
Confidence 3566666888999999999999999999997732221 0111111146778899998887764 66654 2
Q ss_pred CCC----CHHHHH-HHHHcCCccccC
Q psy15335 80 GPW----SPMNIV-QFVQRGIDMFDS 100 (552)
Q Consensus 80 GvG----~P~dIl-~aValGVDmFDc 100 (552)
|.- +..+++ .+.+.|+|.|..
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 321 234444 456679998864
No 192
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.38 E-value=2.8e+02 Score=30.39 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=54.5
Q ss_pred eccCCCHHHHHHHHHHHHc-CCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHc
Q psy15335 15 IQGGLDLSLRRYCAELYAT-RDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQR 93 (552)
Q Consensus 15 VQGG~~~DLR~~SA~eL~~-l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aVal 93 (552)
|-=|..++-..+..+.++. .+++.++|.--+. ..+-+.++|.++++..| +.+...=.|.+|+....++..
T Consensus 101 vavG~~~~d~er~~~L~~~~~g~D~iviD~AhG--------hs~~~i~~ik~ik~~~P-~~~vIaGNV~T~e~a~~Li~a 171 (346)
T PRK05096 101 VSTGTSDADFEKTKQILALSPALNFICIDVANG--------YSEHFVQFVAKAREAWP-DKTICAGNVVTGEMVEELILS 171 (346)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCC--------cHHHHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHc
Confidence 3334555555554444432 5789999985553 35677999999999886 477776679999999999999
Q ss_pred CCccc
Q psy15335 94 GIDMF 98 (552)
Q Consensus 94 GVDmF 98 (552)
|+|.+
T Consensus 172 GAD~v 176 (346)
T PRK05096 172 GADIV 176 (346)
T ss_pred CCCEE
Confidence 99964
No 193
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.38 E-value=1.6e+02 Score=31.72 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCccc-cC-hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccCh
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATED-LG-CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSG 101 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~~-m~-~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv 101 (552)
.+-|+.+.+.|++++.+.+-. |-.... .. .+.+.++.+. .+.+....|.++ =||-+..||+.++++|.|..=..
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhg--G~~~d~~~~~~~~L~~i~~~-~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHG--GRQLDTAPAPIEVLLEIRKH-CPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCC--cccCCCCCCHHHHHHHHHHH-HHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 566777889999999998733 221100 01 1122222221 112334567666 56779999999999999998888
Q ss_pred hHHHhhc
Q psy15335 102 LPLVLAD 108 (552)
Q Consensus 102 ~Ptr~AR 108 (552)
.|..++-
T Consensus 301 ~~~l~~l 307 (344)
T cd02922 301 RPFLYAL 307 (344)
T ss_pred HHHHHHH
Confidence 8877763
No 194
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=26.92 E-value=1.4e+02 Score=29.77 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=22.0
Q ss_pred CcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 74 KLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 74 KPRyLmGvG~P~dIl~aValGVDmF 98 (552)
...++.|+-+|.++..+..+|+|.+
T Consensus 104 ~~~~~~G~~t~~E~~~A~~~Gad~v 128 (206)
T PRK09140 104 GMVVMPGVATPTEAFAALRAGAQAL 128 (206)
T ss_pred CCcEEcccCCHHHHHHHHHcCCCEE
Confidence 4457799999999999999999977
No 195
>PRK08185 hypothetical protein; Provisional
Probab=26.73 E-value=2.7e+02 Score=29.31 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcceEEE-----ccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCC-C-HHHHHHHHHcCCcc
Q psy15335 25 RYCAELYATRDVHGFLI-----DGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPW-S-PMNIVQFVQRGIDM 97 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaI-----GGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG-~-P~dIl~aValGVDm 97 (552)
.++.+++.+.+++.+++ +|+-..+ ..+.++ .++|..+.+.+ +.|..++|-. . .+++-.|+.+||==
T Consensus 152 eea~~f~~~TgvD~LAvaiGt~HG~y~~~-~kp~L~----~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 152 EQAEDFVSRTGVDTLAVAIGTAHGIYPKD-KKPELQ----MDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred HHHHHHHHhhCCCEEEeccCcccCCcCCC-CCCCcC----HHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 34566666678899888 6664311 112344 44555554444 6899998754 3 56677799999863
No 196
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=26.32 E-value=1.5e+02 Score=29.04 Aligned_cols=64 Identities=16% Similarity=-0.010 Sum_probs=39.1
Q ss_pred HHHcCCcceEEEc--cccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCcccc
Q psy15335 30 LYATRDVHGFLID--GLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 30 eL~~l~f~GyaIG--Gl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFD 99 (552)
.+.+.|++.+.+. |... .... ....-.+.+..+.+.+ +.|... .|+.+|.++..+.++|+|.+=
T Consensus 138 ~a~~~G~d~i~~~~~g~t~--~~~~--~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 138 NAAKLGFDIIGTTLSGYTE--ETAK--TEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred HHHHcCCCEEEccCccccc--cccC--CCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3445688887653 3221 1000 0111235566565555 577776 778899999999999999653
No 197
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=26.23 E-value=1.3e+02 Score=30.86 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=38.2
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHH
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIV 88 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl 88 (552)
+.+.+.+.+.+.|||... +..+.+.+++..+++ .+.|..|+ .|++..|.
T Consensus 26 ~~~~~~gtdai~vGGS~~-------vt~~~~~~~v~~ik~---~~lPvilf-p~~~~~i~ 74 (232)
T PRK04169 26 EAICESGTDAIIVGGSDG-------VTEENVDELVKAIKE---YDLPVILF-PGNIEGIS 74 (232)
T ss_pred HHHHhcCCCEEEEcCCCc-------cchHHHHHHHHHHhc---CCCCEEEe-CCCccccC
Confidence 667789999999998763 246778889998887 46999987 57766543
No 198
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.09 E-value=2e+02 Score=32.66 Aligned_cols=63 Identities=8% Similarity=-0.045 Sum_probs=46.8
Q ss_pred HHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC--CCCHHHHHHHHHcCCccc
Q psy15335 26 YCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG--PWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG--vG~P~dIl~aValGVDmF 98 (552)
+-++.|.+.|++-+.|. .+. |. ...+.+.|++++...| .+..+.+ |.++++...++..|+|.+
T Consensus 245 ~ra~~Lv~aGvd~i~vd-~a~-g~------~~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 245 ERVPALVEAGADVLCID-SSE-GY------SEWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred HHHHHHHHhCCCeEeec-Ccc-cc------cHHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHHcCCCEE
Confidence 34455778899999998 332 32 3445788888888887 3355666 889999999999999863
No 199
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=25.75 E-value=3e+02 Score=28.78 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=45.2
Q ss_pred HHHHHHHcCCcceEE--EccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC--CCCHHHHHHHHHcCCccccCh
Q psy15335 26 YCAELYATRDVHGFL--IDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG--PWSPMNIVQFVQRGIDMFDSG 101 (552)
Q Consensus 26 ~SA~eL~~l~f~Gya--IGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG--vG~P~dIl~aValGVDmFDcv 101 (552)
++.+.+.+.+++.++ ||=+++.-...+.++.+- |+.+.+.+ +.|.+++| -=.++++..++..||+-+=..
T Consensus 157 ea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~----L~~i~~~~--~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 157 EAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFER----LKEIKELT--NIPLVLHGASGIPEEQIKKAIKLGIAKINID 230 (282)
T ss_pred HHHHHHHHHCcCEEeeccCccccccCCCCccCHHH----HHHHHHHh--CCCEEEECCCCCCHHHHHHHHHcCCCEEEEC
Confidence 344445556888888 454442111112344344 44444444 48999999 557889999999999966544
Q ss_pred hHHHh
Q psy15335 102 LPLVL 106 (552)
Q Consensus 102 ~Ptr~ 106 (552)
.-.+.
T Consensus 231 T~l~~ 235 (282)
T TIGR01859 231 TDCRI 235 (282)
T ss_pred cHHHH
Confidence 44333
No 200
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.74 E-value=4.7e+02 Score=26.48 Aligned_cols=87 Identities=14% Similarity=0.012 Sum_probs=54.6
Q ss_pred cCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCc-------------cccC----hhHHHHHHHHhccCCCCCCcEeec
Q psy15335 17 GGLDLSLRRYCAELYATRDVHGFLIDGLCADEGAT-------------EDLG----CDVVNAVLENTVPYLPNDKLRIIQ 79 (552)
Q Consensus 17 GG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~-------------~~m~----~eem~~iL~~v~~~LP~dKPRyLm 79 (552)
++...+.-.+-++.+.+.|++++.+-+-.. +... .-+. ...-.+.+..+.+.+|.+.|....
T Consensus 171 ~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~-~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~ 249 (289)
T cd02810 171 PYFDLEDIVELAKAAERAGADGLTAINTIS-GRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGV 249 (289)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcccC-ccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444544555667778888999999753211 0000 0000 111256677777888767787664
Q ss_pred -CCCCHHHHHHHHHcCCccccChhHH
Q psy15335 80 -GPWSPMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 80 -GvG~P~dIl~aValGVDmFDcv~Pt 104 (552)
||-+|+++.+++++|+|.+=...+.
T Consensus 250 GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 250 GGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred CCCCCHHHHHHHHHcCccHheEcHHH
Confidence 5668999999999999977655443
No 201
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=25.32 E-value=2.2e+02 Score=28.71 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeec-CCCCHHHHHHHHHcC-CccccChh
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQ-GPWSPMNIVQFVQRG-IDMFDSGL 102 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLm-GvG~P~dIl~aValG-VDmFDcv~ 102 (552)
.+-++.+.+.|++.+.+-++...|-. +-.+ .+++..+.+.. +.|.+.- |+.+|+++.++...| +|.+=...
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~-~g~~----~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTK-SGYD----LELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAAS 230 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCC-CCCC----HHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhH
Confidence 34567778899999998665542210 0111 34444444443 4788774 599999999999999 99874443
Q ss_pred H
Q psy15335 103 P 103 (552)
Q Consensus 103 P 103 (552)
.
T Consensus 231 a 231 (254)
T TIGR00735 231 V 231 (254)
T ss_pred H
Confidence 3
No 202
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=25.25 E-value=1.8e+02 Score=29.52 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=47.9
Q ss_pred HHHHHHcCCcceEEEccccC---CC-CCccccChhHHHHHHHHhccCCCCCCcEee---cCCCCHHHHHHHHH
Q psy15335 27 CAELYATRDVHGFLIDGLCA---DE-GATEDLGCDVVNAVLENTVPYLPNDKLRII---QGPWSPMNIVQFVQ 92 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v---~G-E~~~~m~~eem~~iL~~v~~~LP~dKPRyL---mGvG~P~dIl~aVa 92 (552)
||+.+.+.||+...++|... .| +....+..++|...+..+.+.. ..|... +|.|.+..+...|+
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHHHHHHHH
Confidence 78888888999999999763 13 3344456788888888888776 567665 78889888876664
No 203
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=25.14 E-value=2.3e+02 Score=29.66 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCcEee-cCCCCHHHHHHHHHcCCccccChh
Q psy15335 73 DKLRII-QGPWSPMNIVQFVQRGIDMFDSGL 102 (552)
Q Consensus 73 dKPRyL-mGvG~P~dIl~aValGVDmFDcv~ 102 (552)
+.|.++ =||++|+++..+.++|+|-.=+.+
T Consensus 175 ~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 467776 579999999999999999544433
No 204
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.85 E-value=2e+02 Score=30.35 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCcceEEEccc---------cC--------CCCCccccChhHHHHHHHHhccCCCCCCcEee-c-------
Q psy15335 25 RYCAELYATRDVHGFLIDGL---------CA--------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-Q------- 79 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl---------~v--------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-m------- 79 (552)
.++|+.+.+.||+|+=|=+- ++ .|.+.+. ...-..++|+++++.++++-|.-+ +
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslen-R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLEN-RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHH-HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 35788888899999977332 22 1223222 245678999999999998877665 3
Q ss_pred CCCCHHHHH----HHHHcCCccccCh
Q psy15335 80 GPWSPMNIV----QFVQRGIDMFDSG 101 (552)
Q Consensus 80 GvG~P~dIl----~aValGVDmFDcv 101 (552)
+-.++++.+ .+.+.|+|++..+
T Consensus 231 ~g~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 223555543 3346688888754
No 205
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.70 E-value=2.4e+02 Score=26.71 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=39.6
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee--cCCCCHHHHHHHHHcCCcc
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII--QGPWSPMNIVQFVQRGIDM 97 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL--mGvG~P~dIl~aValGVDm 97 (552)
++.+.+.|.+++.+=+.. ..+.+.++++.+.+. +.+..+ ++..+|.++..+...|+|.
T Consensus 70 ~~~~~~aGad~i~~h~~~---------~~~~~~~~i~~~~~~---g~~~~v~~~~~~t~~e~~~~~~~~~d~ 129 (202)
T cd04726 70 AEMAFKAGADIVTVLGAA---------PLSTIKKAVKAAKKY---GKEVQVDLIGVEDPEKRAKLLKLGVDI 129 (202)
T ss_pred HHHHHhcCCCEEEEEeeC---------CHHHHHHHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHCCCCE
Confidence 466677888888864322 123456666666542 445553 8999999999999989984
No 206
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=24.66 E-value=1.4e+02 Score=33.71 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=38.3
Q ss_pred HHHHHHHcCCcceEEEccccCCCCCccc--cC--hhHHHHHHHHhccCCCC-CCcEeec--CCCCHHHHHHHHHcCCccc
Q psy15335 26 YCAELYATRDVHGFLIDGLCADEGATED--LG--CDVVNAVLENTVPYLPN-DKLRIIQ--GPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v~GE~~~~--m~--~eem~~iL~~v~~~LP~-dKPRyLm--GvG~P~dIl~aValGVDmF 98 (552)
+-++.+.+.|++++.+| +.+++.-+.. +. ..++ ..|..+.+.... +.| .+. |+.+|.+|+.|.++|.|..
T Consensus 294 ~~a~~~~~aGad~I~vg-~g~Gs~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~-vIadGGi~~~~di~kAla~GA~~V 370 (495)
T PTZ00314 294 DQAKNLIDAGADGLRIG-MGSGSICITQEVCAVGRPQA-SAVYHVARYARERGVP-CIADGGIKNSGDICKALALGADCV 370 (495)
T ss_pred HHHHHHHHcCCCEEEEC-CcCCcccccchhccCCCChH-HHHHHHHHHHhhcCCe-EEecCCCCCHHHHHHHHHcCCCEE
Confidence 34556778999999875 2211000000 00 0111 122222222222 345 567 9999999999999999954
No 207
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=24.60 E-value=2e+02 Score=30.31 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHH
Q psy15335 29 ELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPL 104 (552)
Q Consensus 29 ~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Pt 104 (552)
+++.+.|++.+.+.. |+.+++.+.+..+. ...+....-.-|-=+|..+.+....|||+|=..+||
T Consensus 202 ~ea~~~GaDiI~lDn----------~~~e~l~~~v~~l~-~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 202 LTVLQASPDILQLDK----------FTPQQLHHLHERLK-FFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred HHHHHcCcCEEEECC----------CCHHHHHHHHHHHh-ccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcce
Confidence 344567888888773 45677788877553 233444556677779999999999999999777764
No 208
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.28 E-value=1.1e+02 Score=31.32 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcCCccccChh
Q psy15335 56 CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRGIDMFDSGL 102 (552)
Q Consensus 56 ~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValGVDmFDcv~ 102 (552)
..++.+.|..+++.. +.|..+ +|+-+|+++-.+.+.|+|.+=..+
T Consensus 183 ~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 183 ASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 355788888888865 358777 777789999999999999664433
No 209
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=24.21 E-value=1.6e+02 Score=30.02 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=48.4
Q ss_pred HHHHHHHcCCcceEEEccccC---CC-CCccccChhHHHHHHHHhccCCCCCCcEee---cCCCC-HHHHHHHHH
Q psy15335 26 YCAELYATRDVHGFLIDGLCA---DE-GATEDLGCDVVNAVLENTVPYLPNDKLRII---QGPWS-PMNIVQFVQ 92 (552)
Q Consensus 26 ~SA~eL~~l~f~GyaIGGl~v---~G-E~~~~m~~eem~~iL~~v~~~LP~dKPRyL---mGvG~-P~dIl~aVa 92 (552)
-||+.+.+.||+...++|+.. .| +..+.++.++|.+.+..++... +.|..+ -|.|. |..+...|.
T Consensus 20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~~v~~tv~ 92 (238)
T PF13714_consen 20 LSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPENVARTVR 92 (238)
T ss_dssp HHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhHHHHHHHH
Confidence 378888889999999998762 13 2235567899999999888877 689888 79998 988887765
No 210
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.09 E-value=2.4e+02 Score=28.85 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=29.2
Q ss_pred HHHHHHhccCCCCCCcEeec-CCCCHHHHHHHHHcCCccccChhH
Q psy15335 60 NAVLENTVPYLPNDKLRIIQ-GPWSPMNIVQFVQRGIDMFDSGLP 103 (552)
Q Consensus 60 ~~iL~~v~~~LP~dKPRyLm-GvG~P~dIl~aValGVDmFDcv~P 103 (552)
.+.+..+.+.+ +.|.... |+-+|.++.++++.|.|++=...+
T Consensus 220 ~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra 262 (296)
T cd04740 220 LRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTA 262 (296)
T ss_pred HHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchh
Confidence 45555555554 4676654 455899999999999997655444
No 211
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.83 E-value=1.3e+02 Score=30.76 Aligned_cols=81 Identities=10% Similarity=0.069 Sum_probs=48.6
Q ss_pred EE-eeccCCCHHHHHH-HHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHH
Q psy15335 12 IA-PIQGGLDLSLRRY-CAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIV 88 (552)
Q Consensus 12 fG-IVQGG~~~DLR~~-SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl 88 (552)
|| ++-||+..|.+.+ +++++.++|-.-|.+. -|. ..+-+.+-+..+ .+..|..+ +|..+|++++
T Consensus 17 ~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~-----~e~----~~~~i~~e~~~~----~~~~~vivnv~~~~~ee~~ 83 (231)
T TIGR00736 17 FAIVTLGGYNADRATYKASRDIEKRGRKEFSFN-----LEE----FNSYIIEQIKKA----ESRALVSVNVRFVDLEEAY 83 (231)
T ss_pred cCEEEECCccCCHHHHHHHHHHHHcCCcccCcC-----ccc----HHHHHHHHHHHH----hhcCCEEEEEecCCHHHHH
Confidence 44 4569999998765 5568888887776533 111 112223333333 34445555 7777899888
Q ss_pred HH---HHcCCcccc--ChhHHH
Q psy15335 89 QF---VQRGIDMFD--SGLPLV 105 (552)
Q Consensus 89 ~a---ValGVDmFD--cv~Ptr 105 (552)
.+ ++.++|.|| |..|..
T Consensus 84 ~~a~~v~~~~d~IdiN~gCP~~ 105 (231)
T TIGR00736 84 DVLLTIAEHADIIEINAHCRQP 105 (231)
T ss_pred HHHHHHhcCCCEEEEECCCCcH
Confidence 76 456888877 444543
No 212
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=23.76 E-value=3.9e+02 Score=28.36 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecC--CCCHHHHHHHHHcCCcc
Q psy15335 20 DLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQG--PWSPMNIVQFVQRGIDM 97 (552)
Q Consensus 20 ~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmG--vG~P~dIl~aValGVDm 97 (552)
.++.-.+-|+.+.++|+.-++|=|... + .......+.+.++|..+.+.+|.-+.+.+.. .|....+-.+.+.|.|+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~-d-dl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv 169 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDR-D-DLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDV 169 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecC-C-CcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchh
Confidence 566677888889999999998876542 1 1111124678999999988888766666543 34555666667888886
Q ss_pred cc
Q psy15335 98 FD 99 (552)
Q Consensus 98 FD 99 (552)
|-
T Consensus 170 ~~ 171 (302)
T TIGR00510 170 YN 171 (302)
T ss_pred hc
Confidence 53
No 213
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.42 E-value=2.9e+02 Score=29.33 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEe-----------ecCCCCHHHH
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRI-----------IQGPWSPMNI 87 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRy-----------LmGvG~P~dI 87 (552)
...|.-.+.|+++.+.|+.-+.|-| |+.. .++.+.+.+++..+.+.+|.=+... .+|.-..+.+
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~----G~~p-~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l 153 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVG----GLHP-NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVL 153 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEec----CCCC-CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHH
Confidence 3566666677778888887777753 2222 2356788889998888887443322 2566667778
Q ss_pred HHHHHcCCcccc
Q psy15335 88 VQFVQRGIDMFD 99 (552)
Q Consensus 88 l~aValGVDmFD 99 (552)
-.+.++|+|.+-
T Consensus 154 ~~LkeAGld~~~ 165 (351)
T TIGR03700 154 DELKEAGLDSMP 165 (351)
T ss_pred HHHHHcCCCcCC
Confidence 888999999765
No 214
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.16 E-value=3.6e+02 Score=29.01 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCcc-
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDM- 97 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDm- 97 (552)
...+.-.+.++.+.+.|+.-+.|-| |++....+.+.+.+++..+.+.+|.= ... .|.-+...+-.+.++|||-
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvg----Ge~p~~~~~e~l~~~i~~Ik~~~p~i-~i~-~g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLT----GEHEAKVGVDYIRRALPIAREYFSSV-SIE-VQPLSEEEYAELVELGLDGV 177 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEee----CCCCCCCCHHHHHHHHHHHHHhCCCc-eec-cCCCCHHHHHHHHHcCCCEE
Confidence 4566666777778889999986632 34333345788888888888776531 122 4667999999999999993
Q ss_pred ---ccChhHHHhh
Q psy15335 98 ---FDSGLPLVLA 107 (552)
Q Consensus 98 ---FDcv~Ptr~A 107 (552)
.|+..+..+.
T Consensus 178 ~i~lET~~~~~~~ 190 (371)
T PRK09240 178 TVYQETYNPATYA 190 (371)
T ss_pred EEEEecCCHHHHH
Confidence 4554454444
No 215
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.87 E-value=1.9e+02 Score=30.74 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCcceEEEccccCCCCCc---------cccC----hhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHH
Q psy15335 23 LRRYCAELYATRDVHGFLIDGLCADEGAT---------EDLG----CDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIV 88 (552)
Q Consensus 23 LR~~SA~eL~~l~f~GyaIGGl~v~GE~~---------~~m~----~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl 88 (552)
.-.+-|+.+.+.|++|+.+-+-...-... .-+. +..-.+.+..+.+.++.+-|... =||-+++++.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~ 305 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY 305 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 34456667778899999886522100000 0011 12345677777777777778764 4677999999
Q ss_pred HHHHcCCccccChhHH
Q psy15335 89 QFVQRGIDMFDSGLPL 104 (552)
Q Consensus 89 ~aValGVDmFDcv~Pt 104 (552)
+.+..|.|++-...+.
T Consensus 306 e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 306 EKIRAGASLVQIYSGL 321 (344)
T ss_pred HHHHcCCCHHHHHHHH
Confidence 9999999987655544
No 216
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.84 E-value=2.9e+02 Score=28.00 Aligned_cols=77 Identities=16% Similarity=0.074 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCC-CC----ccccChhHHHHHHHHhccCCCCCCcEee--cCCCCHHHHHHHH
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADE-GA----TEDLGCDVVNAVLENTVPYLPNDKLRII--QGPWSPMNIVQFV 91 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~G-E~----~~~m~~eem~~iL~~v~~~LP~dKPRyL--mGvG~P~dIl~aV 91 (552)
+..+...+-++.|.+.||+-+=+|.....+ .+ ....+. .+.+..+.+.+|..|-..+ .|.+.+.+|-.+.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~---~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTD---EEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCCh---HHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 567888889999999999988887221000 00 001122 2344444455554443322 2688999999999
Q ss_pred HcCCccc
Q psy15335 92 QRGIDMF 98 (552)
Q Consensus 92 alGVDmF 98 (552)
+.|+|++
T Consensus 96 ~~g~~~i 102 (263)
T cd07943 96 DLGVDVV 102 (263)
T ss_pred HcCCCEE
Confidence 9999965
No 217
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=22.26 E-value=2.2e+02 Score=30.24 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCC----
Q psy15335 25 RYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPW---- 82 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG---- 82 (552)
.++|+.+.+.||+|+=|=+-+. .|.+.+. ...-+.++|+.+++.++.+ |.-+ +...
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslen-R~rf~~eii~air~~vg~d-~v~vRis~~~~~~ 232 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIEN-RARFLLEVVDAVAEAIGAD-RVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHH-hhhHHHHHHHHHHHHhCCC-ceEEEECccccCC
Q ss_pred ------CHHHHHHHH----HcCCccccCh
Q psy15335 83 ------SPMNIVQFV----QRGIDMFDSG 101 (552)
Q Consensus 83 ------~P~dIl~aV----alGVDmFDcv 101 (552)
++++.+..+ +.|||+++.+
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs 261 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHLV 261 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
No 218
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=22.10 E-value=3.5e+02 Score=27.81 Aligned_cols=84 Identities=20% Similarity=0.104 Sum_probs=51.3
Q ss_pred ccCCC--HHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHH---HHHHhccCCCCCCcEeecCCCCHHHHHHH
Q psy15335 16 QGGLD--LSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNA---VLENTVPYLPNDKLRIIQGPWSPMNIVQF 90 (552)
Q Consensus 16 QGG~~--~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~---iL~~v~~~LP~dKPRyLmGvG~P~dIl~a 90 (552)
-||.+ .+.-.+-|++..+-|.+.+=|||-+.+-.....-..+++.+ +|+.+.... +.|. -.=-.+|..+-.|
T Consensus 16 dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~--~~pl-SIDT~~~~v~e~a 92 (257)
T cd00739 16 DGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL--DVLI-SVDTFRAEVARAA 92 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCcE-EEeCCCHHHHHHH
Confidence 36643 34444445666678999999998654111111112344444 455554332 5664 4666899999999
Q ss_pred HHcCCccccChh
Q psy15335 91 VQRGIDMFDSGL 102 (552)
Q Consensus 91 ValGVDmFDcv~ 102 (552)
++.|+|++=++.
T Consensus 93 l~~G~~iINdis 104 (257)
T cd00739 93 LEAGADIINDVS 104 (257)
T ss_pred HHhCCCEEEeCC
Confidence 999999876654
No 219
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=21.97 E-value=2.1e+02 Score=33.73 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCcceEEEcccc---------C--------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cC------
Q psy15335 25 RYCAELYATRDVHGFLIDGLC---------A--------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QG------ 80 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~---------v--------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mG------ 80 (552)
.++|+.+.+.||+|+=|=+-+ + .|.+.+. ...-..+||+.+++.++++.|.-+ +.
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslen-R~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLEN-RLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHH-HhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 457788888999999874331 1 1222211 235678899999999998887765 22
Q ss_pred -CCCHHHHH----HHHHcCCccccChhH
Q psy15335 81 -PWSPMNIV----QFVQRGIDMFDSGLP 103 (552)
Q Consensus 81 -vG~P~dIl----~aValGVDmFDcv~P 103 (552)
-.++++.+ .+.+.|||++|.+..
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d~i~vs~g 660 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGADLIDVSSG 660 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 23455433 345679999998753
No 220
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=21.96 E-value=2.8e+02 Score=28.98 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=44.7
Q ss_pred HHHHHHcCC-cceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChhHHH
Q psy15335 27 CAELYATRD-VHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLV 105 (552)
Q Consensus 27 SA~eL~~l~-f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~Ptr 105 (552)
.++.....+ .+|.++.|... |.+. +.++ |..+++..+ +.|.+|=|-=+|..+-+++.. .|-+|..+...
T Consensus 162 ~a~~~~~~~~aDavivtG~~T-G~~~---d~~~----l~~vr~~~~-~~PvllggGvt~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 162 IALDTVERGLADAVILSGKTT-GTEV---DLEL----LKLAKETVK-DTPVLAGSGVNLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHhcCCCEEEECcCCC-CCCC---CHHH----HHHHHhccC-CCeEEEECCCCHHHHHHHHhh-CCEEEECCCcc
Confidence 334444455 89999999986 6542 3333 334433332 568776665599999999986 77777766544
No 221
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.91 E-value=83 Score=32.28 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=35.8
Q ss_pred CCcccccHHHHHHHHHhhccccCccccccC-Cccch----h-hccCCCCceecccc
Q psy15335 277 GKNELSNTSDIYSSMESDIHQSTHQEALII-NTDDV----A-SKSSEKDTLYTKSS 326 (552)
Q Consensus 277 G~lek~~~~~Iv~~~~~~LP~~kPrHL~Gi-~P~dI----f-aValGvDtFDcv~p 326 (552)
|.+..+++.+++..+++.++++.|..+.+= ...+= + |+++|+|.||+...
T Consensus 162 G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~ 217 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVY 217 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecc
Confidence 455667889999999999987777654333 21111 2 79999999998776
No 222
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=21.86 E-value=2.3e+02 Score=29.98 Aligned_cols=64 Identities=16% Similarity=0.001 Sum_probs=48.6
Q ss_pred HHHHHHcCCcceEEEccccC----CCCC-ccccChhHHHHHHHHhccCCCCCCcEee---cCCCCHHHHHHHHH
Q psy15335 27 CAELYATRDVHGFLIDGLCA----DEGA-TEDLGCDVVNAVLENTVPYLPNDKLRII---QGPWSPMNIVQFVQ 92 (552)
Q Consensus 27 SA~eL~~l~f~GyaIGGl~v----~GE~-~~~m~~eem~~iL~~v~~~LP~dKPRyL---mGvG~P~dIl~aVa 92 (552)
||+.+++.||+...+.|+.+ .|-| ...+..+++.+.+..+.... +.|..+ -|.|.|..+...|.
T Consensus 29 SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~v~r~V~ 100 (292)
T PRK11320 29 HALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAFNIARTVK 100 (292)
T ss_pred HHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHHHHHHHH
Confidence 77778888999999988753 2333 24567889999998888876 468777 79999999866664
No 223
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.77 E-value=2.7e+02 Score=31.42 Aligned_cols=86 Identities=9% Similarity=-0.010 Sum_probs=61.1
Q ss_pred eEEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-----cCCCCH
Q psy15335 11 VIAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-----QGPWSP 84 (552)
Q Consensus 11 LfGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-----mGvG~P 84 (552)
.|.+-.++ ..++.-.+.++.+.+.|.+-+.|--.. ..+.+.++.+++..+...++ .|.-+ +|.+ .
T Consensus 131 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTv------G~~~P~~~~~lv~~l~~~~~--v~l~~H~HND~GlA-v 201 (488)
T PRK09389 131 ELSGEDASRADLDFLKELYKAGIEAGADRICFCDTV------GILTPEKTYELFKRLSELVK--GPVSIHCHNDFGLA-V 201 (488)
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCC------CCcCHHHHHHHHHHHHhhcC--CeEEEEecCCccHH-H
Confidence 34444444 567788888888989999988876333 34568899999998887665 34433 2433 5
Q ss_pred HHHHHHHHcCCccccChhHHH
Q psy15335 85 MNIVQFVQRGIDMFDSGLPLV 105 (552)
Q Consensus 85 ~dIl~aValGVDmFDcv~Ptr 105 (552)
...+.|+..|+|.+|++..=.
T Consensus 202 ANalaAv~aGa~~Vd~Ti~Gi 222 (488)
T PRK09389 202 ANTLAALAAGADQVHVTINGI 222 (488)
T ss_pred HHHHHHHHcCCCEEEEEcccc
Confidence 678899999999999987543
No 224
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.71 E-value=76 Score=32.23 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.6
Q ss_pred CcEeecCCCCHHHHHHHHHcCCccc
Q psy15335 74 KLRIIQGPWSPMNIVQFVQRGIDMF 98 (552)
Q Consensus 74 KPRyLmGvG~P~dIl~aValGVDmF 98 (552)
.-.++.|+.+|.+|..|.++|.|++
T Consensus 112 ~i~~iPG~~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 112 KVPYSPGCGSLSEIGYAEELGCEIV 136 (222)
T ss_pred CCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 3447899999999999999999953
No 225
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=21.68 E-value=2.5e+02 Score=32.01 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeec-----CCCCHHHHHHHHHc
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQ-----GPWSPMNIVQFVQR 93 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLm-----GvG~P~dIl~aVal 93 (552)
..++.-.+.++.+.+.|.+-+.|--.. ..+.+.++.+++..+++.+|. .+.-++ |.+ -..-+.||..
T Consensus 151 ~~~~~l~~~~~~a~~aGad~i~i~DTv------G~~~P~~v~~li~~l~~~~~~-~~i~vH~HND~GlA-vANslaAv~A 222 (526)
T TIGR00977 151 ANPEYALATLATAQQAGADWLVLCDTN------GGTLPHEISEITTKVKRSLKQ-PQLGIHAHNDSGTA-VANSLLAVEA 222 (526)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCC------CCcCHHHHHHHHHHHHHhCCC-CEEEEEECCCCChH-HHHHHHHHHh
Confidence 678888889999999999988886322 235689999999999988873 223332 333 4567889999
Q ss_pred CCccccChhH
Q psy15335 94 GIDMFDSGLP 103 (552)
Q Consensus 94 GVDmFDcv~P 103 (552)
|+|.+||+.-
T Consensus 223 GA~~Vd~Tin 232 (526)
T TIGR00977 223 GATMVQGTIN 232 (526)
T ss_pred CCCEEEEecc
Confidence 9999999864
No 226
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=21.22 E-value=3.4e+02 Score=28.55 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=46.5
Q ss_pred HHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeec-CCCCHHHHHHHHHcCCccccChhHHHh
Q psy15335 28 AELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQ-GPWSPMNIVQFVQRGIDMFDSGLPLVL 106 (552)
Q Consensus 28 A~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLm-GvG~P~dIl~aValGVDmFDcv~Ptr~ 106 (552)
++.+.+.|++++++-|.-..|.. .... ...+|..+++.+ +.|.+.- |++++.++..+.++|.|-+=.......
T Consensus 122 a~~a~~~GaD~Ivv~g~eagGh~-g~~~---~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 122 AKRMEKAGADAVIAEGMESGGHI-GELT---TMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHHHcCCCEEEEECcccCCCC-CCCc---HHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 45666789999998544321210 1111 244455454444 4788776 599999999999999996655544444
Q ss_pred hc
Q psy15335 107 AD 108 (552)
Q Consensus 107 AR 108 (552)
+.
T Consensus 196 t~ 197 (307)
T TIGR03151 196 AK 197 (307)
T ss_pred cc
Confidence 43
No 227
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=21.06 E-value=3.7e+02 Score=28.19 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHcC---Ccc---eEEEccccCCCCCccccChhHHHHHHHHhccCCCC--CCcEeecCC----CCHHH
Q psy15335 19 LDLSLRRYCAELYATR---DVH---GFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN--DKLRIIQGP----WSPMN 86 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l---~f~---GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~--dKPRyLmGv----G~P~d 86 (552)
..++.-.+-++.+.+. +.+ -+.+.- .+..+.+.++.+++..++..+|. +.|.=+++- -.-..
T Consensus 153 ~~~~~l~~~~~~~~~~~~~g~~~~~~i~laD------TvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN 226 (284)
T cd07942 153 TELDFALEVCEAVIDVWQPTPENKIILNLPA------TVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAA 226 (284)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCcceEEEccc------cccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHH
Confidence 6778777777777665 333 455442 22334688999999999888875 333333222 12467
Q ss_pred HHHHHHcCCcccc
Q psy15335 87 IVQFVQRGIDMFD 99 (552)
Q Consensus 87 Il~aValGVDmFD 99 (552)
.+.|+..|++.||
T Consensus 227 ~laA~~aG~~~id 239 (284)
T cd07942 227 AELALLAGADRVE 239 (284)
T ss_pred HHHHHHhCCCEEE
Confidence 8899999999999
No 228
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=21.05 E-value=2.5e+02 Score=29.77 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEe--------ec
Q psy15335 25 RYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRI--------IQ 79 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRy--------Lm 79 (552)
.++|+.+.+.||+|+=|-|-+. .|.+.+. ......++|+.+++.++++-|.- .-
T Consensus 140 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslen-R~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 140 ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFEN-RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHH-HhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Q ss_pred CCCCHHHHHHHHH----cCCccccCh
Q psy15335 80 GPWSPMNIVQFVQ----RGIDMFDSG 101 (552)
Q Consensus 80 GvG~P~dIl~aVa----lGVDmFDcv 101 (552)
|-.++.+.+..+. +|||+++.+
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeC
No 229
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.88 E-value=4.8e+02 Score=26.86 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=54.5
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccc-----cChhHHHHHHHHhccCCCCCCcEeecC-CCCHHHHHH
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATED-----LGCDVVNAVLENTVPYLPNDKLRIIQG-PWSPMNIVQ 89 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~-----m~~eem~~iL~~v~~~LP~dKPRyLmG-vG~P~dIl~ 89 (552)
.||...+.=.+-++.+.+.+++.+.+.+-.. .++... .......+.+..+++.+ +.|...-| +.+|+++.+
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~-~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~ 298 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSY-ESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEE 298 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC-cccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHH
Confidence 3566777778888999999999998775432 111110 01123345555555555 47877654 446999999
Q ss_pred HHHc-CCccccChhH
Q psy15335 90 FVQR-GIDMFDSGLP 103 (552)
Q Consensus 90 aVal-GVDmFDcv~P 103 (552)
+++. |+|++=..-+
T Consensus 299 ~l~~g~aD~V~igR~ 313 (327)
T cd02803 299 ILAEGKADLVALGRA 313 (327)
T ss_pred HHHCCCCCeeeecHH
Confidence 9999 7997654443
No 230
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.87 E-value=3.7e+02 Score=28.38 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee------------cCCCCHHH
Q psy15335 19 LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII------------QGPWSPMN 86 (552)
Q Consensus 19 ~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL------------mGvG~P~d 86 (552)
..++.-.+.++++.++|+.-+.|-| |+. ...+.+.+.++++.+.+..|. ...+. .|.-+++.
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~g----G~~-p~~~~~~~~~i~~~Ik~~~~~-i~~~~~t~~ei~~~~~~~g~~~~e~ 143 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQG----GIH-PDLDGDFYLDILRAVKEEVPG-MHIHAFSPMEVYYGARNSGLSVEEA 143 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEe----CCC-CCCCHHHHHHHHHHHHHHCCC-ceEEecCHHHHHHHHHHcCCCHHHH
Confidence 4566667777888888988888763 222 123566778888888776653 22332 57778888
Q ss_pred HHHHHHcCCccc
Q psy15335 87 IVQFVQRGIDMF 98 (552)
Q Consensus 87 Il~aValGVDmF 98 (552)
+-.+-++|+|.+
T Consensus 144 l~~LkeAGl~~i 155 (343)
T TIGR03551 144 LKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHhCcccc
Confidence 999999999976
No 231
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.80 E-value=5.9e+02 Score=25.31 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCcccc
Q psy15335 60 NAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFD 99 (552)
Q Consensus 60 ~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFD 99 (552)
.+.|..++..+|++.|.+..|-=++..+.+..+.|+|.+=
T Consensus 138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEE
Confidence 3456666677777899999986699999999999999754
No 232
>PRK00208 thiG thiazole synthase; Reviewed
Probab=20.56 E-value=3.2e+02 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCcEee-cCCCCHHHHHHHHHcCCccccChh
Q psy15335 73 DKLRII-QGPWSPMNIVQFVQRGIDMFDSGL 102 (552)
Q Consensus 73 dKPRyL-mGvG~P~dIl~aValGVDmFDcv~ 102 (552)
+-|.++ =||++|+++..+.++|+|-.=+.+
T Consensus 175 ~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 456666 789999999999999999544433
No 233
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.48 E-value=3.9e+02 Score=27.60 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=50.3
Q ss_pred ccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHHHHHHHcC
Q psy15335 16 QGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNIVQFVQRG 94 (552)
Q Consensus 16 QGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dIl~aValG 94 (552)
.--..++.|.+.+..+. .+| -|.++-..+.|..+ . ....+.+.|..+++.. +.|..+ +|+-+|+++..+...
T Consensus 149 vap~t~~eri~~i~~~s-~gf-IY~vs~~GvTG~~~-~-~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~- 221 (258)
T PRK13111 149 VAPTTTDERLKKIASHA-SGF-VYYVSRAGVTGARS-A-DAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV- 221 (258)
T ss_pred eCCCCCHHHHHHHHHhC-CCc-EEEEeCCCCCCccc-C-CCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-
Confidence 33445566777766663 344 33344333223221 1 2456777888888855 688887 777799999999975
Q ss_pred CccccChhH
Q psy15335 95 IDMFDSGLP 103 (552)
Q Consensus 95 VDmFDcv~P 103 (552)
.|.+=..+.
T Consensus 222 ADGviVGSa 230 (258)
T PRK13111 222 ADGVIVGSA 230 (258)
T ss_pred CCEEEEcHH
Confidence 886554443
No 234
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=20.47 E-value=1.9e+02 Score=25.65 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHc-CCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHH--HHcCCc
Q psy15335 22 SLRRYCAELYAT-RDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQF--VQRGID 96 (552)
Q Consensus 22 DLR~~SA~eL~~-l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~a--ValGVD 96 (552)
..+.+.++.+.+ ..++-+++..... ......++++.+++..| + ...++|-.+|...++- ...++|
T Consensus 25 ~~~~~~~~~~~~~~~pdiv~~S~~~~--------~~~~~~~~~~~ik~~~p-~-~~iv~GG~~~t~~p~~~~~~~~~D 92 (127)
T cd02068 25 LSADDIVEDIKELLKPDVVGISLMTS--------AIYEALELAKIAKEVLP-N-VIVVVGGPHATFFPEEILEEPGVD 92 (127)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeeccc--------cHHHHHHHHHHHHHHCC-C-CEEEECCcchhhCHHHHhcCCCCC
Confidence 456777777876 7788888875443 34467788888877776 4 4455776676666655 345555
No 235
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.36 E-value=6.7e+02 Score=25.27 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=53.3
Q ss_pred EEeeccC-CCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccCh-----------------hHHHHHHHHhccCCCCC
Q psy15335 12 IAPIQGG-LDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGC-----------------DVVNAVLENTVPYLPND 73 (552)
Q Consensus 12 fGIVQGG-~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~-----------------eem~~iL~~v~~~LP~d 73 (552)
++-+..| -+.+--.+.++.+.+.|++.+=|| +.. .. +.|+. +...+++..+++.. +
T Consensus 3 i~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~-iPf-sd--Pv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~ 76 (242)
T cd04724 3 IPYITAGDPDLETTLEILKALVEAGADIIELG-IPF-SD--PVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--T 76 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCC-CC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--C
Confidence 3334444 356667788899999999999998 321 22 23331 25567777777664 6
Q ss_pred CcEeecCCCCH-------HHHHHHHHcCCc
Q psy15335 74 KLRIIQGPWSP-------MNIVQFVQRGID 96 (552)
Q Consensus 74 KPRyLmGvG~P-------~dIl~aValGVD 96 (552)
.|.|||+-..| ..+-.+.+.|+|
T Consensus 77 ~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~ 106 (242)
T cd04724 77 IPIVLMGYYNPILQYGLERFLRDAKEAGVD 106 (242)
T ss_pred CCEEEEEecCHHHHhCHHHHHHHHHHCCCc
Confidence 78999988775 446668889998
No 236
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.32 E-value=2.5e+02 Score=28.43 Aligned_cols=67 Identities=7% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcCCccccChh
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGL 102 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValGVDmFDcv~ 102 (552)
.+.+++|.+.|.+-.|+.+-.- ..++.+.+++..+.... -..+--+.+-++...|.++|+|+.=++.
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R-------~Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~TTL 120 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDR-------PRPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIGTTL 120 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSS-------S-SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE-TT
T ss_pred HHHHHHHHHcCCCEEEEecCCC-------CCCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEEccc
Confidence 4678899999999999996442 13467788888887766 3333568999999999999977765554
No 237
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.14 E-value=3.8e+02 Score=27.17 Aligned_cols=79 Identities=11% Similarity=-0.113 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHHHHHHcC---
Q psy15335 18 GLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRG--- 94 (552)
Q Consensus 18 G~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl~aValG--- 94 (552)
.+..+...+-++.|.+.||+-+=+|.+.. .+.+ .+.+..+.+..|.. ....+--+.+.++-.+++.|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~--------~~~~-~~~~~~l~~~~~~~-~~~~l~r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAA--------SPGD-FEAVKRIAREVLNA-EICGLARAVKKDIDAAAEALKPA 85 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC--------CHHH-HHHHHHHHHhCCCC-EEEEEccCCHhhHHHHHHhCCCC
Confidence 35778889999999999999999986542 1222 25566666666542 22223337799999999999
Q ss_pred -Cc---cccChhHHHh
Q psy15335 95 -ID---MFDSGLPLVL 106 (552)
Q Consensus 95 -VD---mFDcv~Ptr~ 106 (552)
+| +|+++++.+.
T Consensus 86 ~~~~i~i~~~~s~~~~ 101 (268)
T cd07940 86 KVDRIHTFIATSDIHL 101 (268)
T ss_pred CCCEEEEEecCCHHHH
Confidence 66 5666666654
No 238
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=20.13 E-value=1.6e+02 Score=30.08 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEeecCCCCHHHHH
Q psy15335 24 RRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIV 88 (552)
Q Consensus 24 R~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyLmGvG~P~dIl 88 (552)
-.+-++.+.+.|.+.+.|||... +..+.+.+++..+++. ..|..|+- |+|..|.
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~-------vt~~~~~~~v~~ik~~---~lPvilfp-~~~~~i~ 69 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQG-------VTYEKTDTLIEALRRY---GLPIILFP-SNPTNVS 69 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCc-------ccHHHHHHHHHHHhcc---CCCEEEeC-CCccccC
Confidence 34567788899999999998763 2567788888888863 39999865 7766554
No 239
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=20.12 E-value=2.1e+02 Score=31.11 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcceEEEccccC-----------------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCH--
Q psy15335 25 RYCAELYATRDVHGFLIDGLCA-----------------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSP-- 84 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v-----------------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P-- 84 (552)
.++|+...+.||||.=|=|-+. .|.+.++ ...-..+||+++++..+++.|.-+ +....+
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlEN-R~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLEN-RARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHH-HHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Q ss_pred ---------HHHHHHHH-cC-CccccChhH
Q psy15335 85 ---------MNIVQFVQ-RG-IDMFDSGLP 103 (552)
Q Consensus 85 ---------~dIl~aVa-lG-VDmFDcv~P 103 (552)
..++..+. +| ||..+.+.+
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecc
No 240
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=20.11 E-value=2.4e+02 Score=30.02 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCcceEEEccc---------cC--------CCCCccccChhHHHHHHHHhccCCCCCCcEee-cCC-----
Q psy15335 25 RYCAELYATRDVHGFLIDGL---------CA--------DEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGP----- 81 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl---------~v--------~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGv----- 81 (552)
.++|+.+.+.||+|+=|=+- ++ .|.+.+. ...-+.+||+.+++.++.+-|.-+ ++.
T Consensus 144 ~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslen-R~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 144 ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLEN-RMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHH-HhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 45777778899999977652 21 1222221 236678899999999987766443 443
Q ss_pred --CCHHHHH----HHHHcC-CccccChhHH
Q psy15335 82 --WSPMNIV----QFVQRG-IDMFDSGLPL 104 (552)
Q Consensus 82 --G~P~dIl----~aValG-VDmFDcv~Pt 104 (552)
-++++.+ .+.+.| ||+++.+...
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 2354443 334577 8999876543
No 241
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.09 E-value=2.8e+02 Score=29.44 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=47.7
Q ss_pred CceEEeeccCCCHHHHHHHHHHHHcCCcceEEEccccCCCCCccccChhHHHHHHHHhccCCCCCCcEee-cCCCCHHHH
Q psy15335 9 TCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDKLRII-QGPWSPMNI 87 (552)
Q Consensus 9 q~LfGIVQGG~~~DLR~~SA~eL~~l~f~GyaIGGl~v~GE~~~~m~~eem~~iL~~v~~~LP~dKPRyL-mGvG~P~dI 87 (552)
..++||.+|-.+.-.|.-|.+. |..+++.--+.. ... .+ .....+ ....-|.++|..+ ++..+|+++
T Consensus 2 ~~~lAPM~g~Td~~fR~l~~~~----g~~~~~~TEMv~-a~~--l~-~~~~~~----~l~~~~~e~p~~vQl~g~~p~~~ 69 (318)
T TIGR00742 2 RFSVAPMLDWTDRHFRYFLRLL----SKHTLLYTEMIT-AKA--II-HGDKKD----ILKFSPEESPVALQLGGSDPNDL 69 (318)
T ss_pred CEEEECCCCCcCHHHHHHHHHh----CCCCEEEeCCEE-Ehh--hh-ccCHHH----HcccCCCCCcEEEEEccCCHHHH
Confidence 4578999999999999998542 332333322221 010 00 011112 2334578899887 677899999
Q ss_pred HHHHH----cCCcccc
Q psy15335 88 VQFVQ----RGIDMFD 99 (552)
Q Consensus 88 l~aVa----lGVDmFD 99 (552)
..++. .|+|.+|
T Consensus 70 ~~aA~~~~~~g~d~ID 85 (318)
T TIGR00742 70 AKCAKIAEKRGYDEIN 85 (318)
T ss_pred HHHHHHHHhCCCCEEE
Confidence 88765 4666665
No 242
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=20.03 E-value=4e+02 Score=28.20 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCcceEEEccccCCCCCcc-----------------ccCh-hHHHHHHHHhccCCCCCCcEee-cCCCCHH
Q psy15335 25 RYCAELYATRDVHGFLIDGLCADEGATE-----------------DLGC-DVVNAVLENTVPYLPNDKLRII-QGPWSPM 85 (552)
Q Consensus 25 ~~SA~eL~~l~f~GyaIGGl~v~GE~~~-----------------~m~~-eem~~iL~~v~~~LP~dKPRyL-mGvG~P~ 85 (552)
.+-|+.+.+.|++++.++|.. |-... ..+. -.....|..+...++ +.|... =|+-++.
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~G--Gt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~ 268 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAG--GTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGL 268 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCC--CCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHH
Confidence 467788889999999999853 21000 0000 001223333333444 567766 4667999
Q ss_pred HHHHHHHcCCccccChhHHHhhc
Q psy15335 86 NIVQFVQRGIDMFDSGLPLVLAD 108 (552)
Q Consensus 86 dIl~aValGVDmFDcv~Ptr~AR 108 (552)
+|+.++++|.|.+=.+.|.+.+-
T Consensus 269 dv~kal~lGAd~V~i~~~~L~~~ 291 (326)
T cd02811 269 DIAKALALGADLVGMAGPFLKAA 291 (326)
T ss_pred HHHHHHHhCCCEEEEcHHHHHHH
Confidence 99999999999998888877653
Done!