RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15335
(552 letters)
>gnl|CDD|216654 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This is a family
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also
known as tRNA-guanine transglycosylase and guanine
insertion enzyme. Queuine tRNA-ribosyltransferase
modifies tRNAs for asparagine, aspartic acid, histidine
and tyrosine with queuine. It catalyzes the exchange of
guanine-34 at the wobble position with
7-aminomethyl-7-deazaguanine, and the addition of a
cyclopentenediol moiety to
7-aminomethyl-7-deazaguanine-34 tRNA; giving a
hypermodified base queuine in the wobble position. The
aligned region contains a zinc binding motif
C-x-C-x2-C-x29-H, and important tRNA and
7-aminomethyl-7deazaguanine binding residues.
Length = 237
Score = 97.8 bits (244), Expect = 5e-23
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7 KDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENT 66
K + +QGGL LR AE A G+ I GL E E L +++
Sbjct: 52 KGQALFGIVQGGLYEDLREESAEELAEDGFDGYAIGGLSVGEEKEEML------ELVDAV 105
Query: 67 VPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHI 121
P LP DK R + G +P +I++ V G+DMFD P A G A TF T ++
Sbjct: 106 TPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVSPTRYARNGRALTFDGTINL 160
Score = 80.8 bits (200), Expect = 4e-17
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 342 LQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
L++ RY DF P+ C+C TC+ ++RAY+HHLL KEML LL+I N
Sbjct: 160 LKNARYKLDFRPLDPPCDCYTCRKYSRAYLHHLLKAKEMLGSRLLTIHN 208
Score = 76.6 bits (189), Expect = 8e-16
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 507 LQHPRYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
L++ RY DF P+ C+C TC+ ++RAY+HHLL KEML LL+
Sbjct: 160 LKNARYKLDFRPLDPPCDCYTCRKYSRAYLHHLLKAKEMLGSRLLT 205
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.
Length = 366
Score = 75.5 bits (187), Expect = 1e-14
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 346 RYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
+Y D P+ EC+C TC++++RAY+HHL E+L L +I N
Sbjct: 292 KYKEDTRPLDPECDCYTCRNYSRAYLHHLFRAGEILGARLNTIHN 336
Score = 75.1 bits (186), Expect = 1e-14
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 15 IQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDK 74
+QGG+ LRR A+ D G+ I GL E + + +LE+T P LP DK
Sbjct: 188 VQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPK------EEMYRILEHTAPLLPEDK 241
Query: 75 LRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFT 114
R + G +P ++V+ V RG+DMFD +P A G FT
Sbjct: 242 PRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFT 281
Score = 70.9 bits (175), Expect = 3e-13
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 511 RYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
+Y D P+ EC+C TC++++RAY+HHL E+L L +
Sbjct: 292 KYKEDTRPLDPECDCYTCRNYSRAYLHHLFRAGEILGARLNT 333
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase.
Different tRNA-guanine transglycosylases catalyze
different tRNA base modifications. Two guanine base
substitutions by different enzymes described by the
model are involved in generating queuosine at position
34 in bacterial tRNAs and archaeosine at position 15 in
archaeal tRNAs. This model is designed for fragment
searching, so the superfamily is used loosely [Protein
synthesis, tRNA and rRNA base modification].
Length = 367
Score = 72.8 bits (179), Expect = 7e-14
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 3 RKALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAV 62
K + + +QGG LRR AE A D G+ I G+ E + +
Sbjct: 171 HKRRNENALFGIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSVGEPK------RDMLRI 224
Query: 63 LENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHI 121
LE+ P LP DK R + G +P + V GIDMFD P A G T + I
Sbjct: 225 LEHVAPLLPKDKPRYLMGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTTEGRIKI 283
Score = 55.1 bits (133), Expect = 4e-08
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 347 YVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
Y D P+ C+C C++++RAY+ HL+ E+L L + N
Sbjct: 288 YKDDTRPLDEPCDCYVCKNYSRAYLRHLIRCNELLGARLATEHN 331
Score = 52.8 bits (127), Expect = 2e-07
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 512 YVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
Y D P+ C+C C++++RAY+ HL+ E+L L +
Sbjct: 288 YKDDTRPLDEPCDCYVCKNYSRAYLRHLIRCNELLGARLAT 328
>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 71.5 bits (176), Expect = 2e-13
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 13 APIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN 72
+QGG LRR AE D G+ I GL + + + +LE T P LP
Sbjct: 181 GIVQGGTYEDLRRRSAEELNELDFDGYAIGGL------SVGEPKEDMVRILEATKPLLPE 234
Query: 73 DKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFT 114
DK R + G P +IV+ V G+DMFD +P A G T
Sbjct: 235 DKPRYLMGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLT 276
Score = 60.4 bits (147), Expect = 8e-10
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 340 MWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
+ +++ + D P+ C C TC++++RAY+ HL E L LL+I N
Sbjct: 281 VNIRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANEELGARLLTIHN 331
Score = 55.7 bits (135), Expect = 3e-08
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 505 MWLQHPRYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
+ +++ + D P+ C C TC++++RAY+ HL E L LL+
Sbjct: 281 VNIRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANEELGARLLT 328
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase,
queuosine-34-forming. This tRNA-guanine
transglycosylase (tgt) catalyzes an exchange for the
guanine base at position 34 of many tRNAs; this
nucleotide is subsequently modified to queuosine. The
Archaea have a closely related enzyme that catalyzes a
base exchange for guanine at position 15 in some tRNAs,
a site that is subsequently converted to the
archaeal-specific modified base archaeosine
(7-formamidino-7-deazaguanosine), while Archaeoglobus
fulgidus has both enzymes [Protein synthesis, tRNA and
rRNA base modification].
Length = 368
Score = 65.1 bits (159), Expect = 2e-11
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 15 IQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDK 74
+QGG LR AE D G+ I GL E + + +LE+T P LP DK
Sbjct: 184 VQGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPK------EDMLRILEHTAPLLPKDK 237
Query: 75 LRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFT 114
R + G +P +++ ++RGIDMFD +P A G F
Sbjct: 238 PRYLMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFV 277
Score = 58.2 bits (141), Expect = 4e-09
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 347 YVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
Y D P+ EC+C TC++++RAY+ HL+ E+L L ++ N
Sbjct: 289 YKDDTRPLDEECDCYTCKNYSRAYLRHLIRCNELLGARLATLHN 332
Score = 55.5 bits (134), Expect = 3e-08
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 512 YVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
Y D P+ EC+C TC++++RAY+ HL+ E+L L +
Sbjct: 289 YKDDTRPLDEECDCYTCKNYSRAYLRHLIRCNELLGARLAT 329
>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional.
Length = 372
Score = 48.7 bits (116), Expect = 4e-06
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 346 RYVTDFTPILAECECLTCQHH-TRAYIHHLLNTKEMLAPVLLSICN 390
RY +D PI C CL C +RAY+ HL E A + SI N
Sbjct: 307 RYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHN 352
Score = 44.4 bits (105), Expect = 1e-04
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 511 RYVADFTPILAECECLTCQHH-TRAYIHHLLNTKEMLAPVLLS 552
RY +D PI C CL C +RAY+ HL E A + S
Sbjct: 307 RYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWAS 349
Score = 32.5 bits (74), Expect = 0.56
Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 15 IQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLG--CDVVNAVLENTVPYLPN 72
I GG+D R+ + G I G LG + V+ T L
Sbjct: 204 IHGGIDPDQRKIGCKFVEDLPFDGSAIGG---------SLGKNLQEMVEVVGVTTSNLSK 254
Query: 73 DKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQ 116
++ + G +I V GID FDS P A G T Q
Sbjct: 255 ERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILTKQ 298
>gnl|CDD|237418 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 639
Score = 39.6 bits (93), Expect = 0.004
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 13 APIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLG-----CDVVNAVLENTV 67
+QG LR+ AE + + + I GA L D+V+ ++ N+
Sbjct: 159 GTVQGSTYPDLRQKSAEEMSKMNFDIYPI-------GAVVPLMESYRYRDLVDIII-NSK 210
Query: 68 PYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDS 100
+LP +K + G PM V G D+FDS
Sbjct: 211 MHLPTNKPVHLFGAGHPMFFALAVALGCDLFDS 243
>gnl|CDD|232972 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase,
archaeosine-15-forming. This tRNA-guanine
transglycosylase (tgt) differs from the tgt of E. coli
and other Bacteria in the site of action and the
modification that results. It exchanges
7-cyano-7-deazaguanine (preQ0) with guanine at position
15 of archaeal tRNA; this nucleotide is subsequently
converted to archaeosine, found exclusively in the
Archaea. This enzyme from Haloferax volcanii has been
purified, characterized, and partially sequenced and is
the basis for identifying this family. In contrast,
bacterial tgt catalyzes the exchange of preQ0 or preQ1
for the guanine base at position 34; this nucleotide is
subsequently modified to queuosine. Archeoglobus
fulgidus has both enzymes, while some other Archaea have
just this one [Protein synthesis, tRNA and rRNA base
modification].
Length = 540
Score = 36.9 bits (85), Expect = 0.029
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 13 APIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLG-----CDVVNAVLENTV 67
P+QG LRR+ A A + I GA L D+ +L +
Sbjct: 58 VPVQGSTHPDLRRFAAGEAAKLGGDIYPI-------GAVVPLMEAYRYRDLARVIL-ESR 109
Query: 68 PYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDS 100
LP + + G PM V G D+FDS
Sbjct: 110 SALPPVEPIHLFGCGHPMLFALAVALGCDLFDS 142
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 33.3 bits (76), Expect = 0.44
Identities = 46/239 (19%), Positives = 77/239 (32%), Gaps = 45/239 (18%)
Query: 126 SSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSN--------ADSSSING 177
NG + G+ + NG + +S S E G SN +D S+ G
Sbjct: 379 VVNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQG 438
Query: 178 K---NELSNTSDIYSSMESDIHQ---------STHQEALIINTDDVASKS---------- 215
+ + + S+ MESD + S + + + + +
Sbjct: 439 EMVGTGVESQSNFN--MESDPLKAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFE 496
Query: 216 ---SEKDTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGE---NGLSN 269
+ T T+ S+I D+ R E + ++ KN SS + NG S
Sbjct: 497 KLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSF 556
Query: 270 AD-------SSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTL 321
A SS NG + S S + ++ ++ AS S D L
Sbjct: 557 ASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDEL 615
Score = 29.9 bits (67), Expect = 4.3
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 391 SSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSN 434
NG + G+ + NG + +S S E G SN
Sbjct: 379 VVNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSN 422
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 32.9 bits (75), Expect = 0.48
Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 22/202 (10%)
Query: 135 DKNGTSNGVPSSINGK----NGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSS 190
+ + I K N + N D EN S E T D +
Sbjct: 354 ALSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNK 413
Query: 191 MESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEM------WLQH 244
S I T+++ + S KD L K++EI ++ P+++E +
Sbjct: 414 NSSFI----------NKTENILTNSPLKDELLEKTTEII-NIENPQEFEFGQIGNDIIST 462
Query: 245 PSINGKNGVSNEDSSSTNGENGLSNADSS-SINGKNELSNTSDIYSSMESDIHQSTHQEA 303
+ D+ + EN SN+ + + N +E N + S++ +++ ++ A
Sbjct: 463 EIAQLDENQNLIDTGEFDLENNFSNSFNPENGNKIDENINETFDTSTISANLSENKTNFA 522
Query: 304 LIINTDDVASKSSEKDTLYTKS 325
N D +SE K
Sbjct: 523 QSFNNKDTNLINSEIPIDLIKD 544
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 30.0 bits (68), Expect = 0.80
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 132 INGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSSM 191
+N ++G+SN +S+ VS+ S+S++ + SN SSS + + S+ + I +
Sbjct: 9 LNMKRSGSSN---TSVTS-GSVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITTES 64
Query: 192 ESDIHQ 197
ESD
Sbjct: 65 ESDFWG 70
Score = 28.8 bits (65), Expect = 1.8
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 397 INGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSSINGKNKLSNTSDIYSSM 456
+N ++G+SN +S+ VS+ S+S++ + SN SSS + S+ + I +
Sbjct: 9 LNMKRSGSSN---TSVTS-GSVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITTES 64
Query: 457 ESDIHQ 462
ESD
Sbjct: 65 ESDFWG 70
Score = 28.4 bits (64), Expect = 3.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 252 GVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSSMESDIHQ 297
VS+ S+S++ + SN SSS + + S+ + I + ESD
Sbjct: 25 SVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITTESESDFWG 70
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 30.8 bits (69), Expect = 2.1
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 122 PLCNSSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSSINGKNEL 181
PLC+ + G G NG + + NG N D +NG + D++ NG +
Sbjct: 236 PLCSQNLGAPGGGPDNGPQDPDNTDDNGPQDPDNTD------DNGPQDPDNTDDNGPQDP 289
Query: 182 SNTSDIYSSMESDIHQSTHQEALIINTDDVA 212
NT+D + + + L N D A
Sbjct: 290 DNTADNGPQDPDNTDDNGPHDPLPHNPSDSA 320
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 30.3 bits (68), Expect = 3.2
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%)
Query: 149 GKNGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDI-YSSMESDIHQSTHQEALIIN 207
K+ S++ +ST + N+ + K+ S T ++ YS D H S + + I
Sbjct: 215 EKSEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIG 274
Query: 208 TDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGL 267
++ SK + S++ S + + +SSS +
Sbjct: 275 INNHHSKHA--------DSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIG 326
Query: 268 SNADSSSINGKNELSNTS 285
S + S+ + SN+S
Sbjct: 327 SKSSKSAKHSNRNKSNSS 344
>gnl|CDD|240525 cd13120, BF2867_like_N, N-terminal domain found in Bacteroides
fragilis Nctc 9343 BF2867 and related proteins. Two
structurally similar domains with low sequence
similarity in a tandem repeat arrangement form a protein
that may have a role in cell adhesion. This family
overlaps with DUF3988.
Length = 156
Score = 28.4 bits (63), Expect = 5.4
Identities = 10/71 (14%), Positives = 21/71 (29%)
Query: 380 MLAPVLLSICNSSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSS 439
+ A +LL+ C+ + + G V ++ + + T G+
Sbjct: 1 LAAALLLAACSQDEEIESPPGEGGIIISVATTTTTTTTRATTTTFETGDAIGVFAYGDGG 60
Query: 440 INGKNKLSNTS 450
G N
Sbjct: 61 AAGTTYTDNVK 71
>gnl|CDD|226069 COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 184
Score = 28.3 bits (63), Expect = 7.0
Identities = 12/94 (12%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 121 IPLCNSSNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSSINGKNE 180
I L + S + + T +G + + + + +T + + D S++ +
Sbjct: 76 ISLEDCDADTSGTTNVSVTFSGTTDTTDNTALAIDASAGATGVGIQILDNDGSALTLNDG 135
Query: 181 LSNTSDIYSSMESDIHQSTHQEALIINTDDVASK 214
S + + + + + +A + T A+
Sbjct: 136 NSTPTVNLNLGDGS--NTLNFKARYVATPAAATA 167
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 487
Score = 29.1 bits (66), Expect = 8.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 11 VIAPIQGGLDLSLRRYCAE 29
+AP+QGG LR A
Sbjct: 160 WVAPVQGGTYPDLREESAR 178
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 28.9 bits (64), Expect = 9.2
Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 9/183 (4%)
Query: 150 KNGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTD 209
GV++ED + + D + + S+ + +T + +L + D
Sbjct: 45 SFGVNSEDDEEIDSDEAFDEEDEKRFADW-SFNASKSGKSNKDHKNLNNTKEISLNDSDD 103
Query: 210 DVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSN 269
V S E + + E + L + ++G ++ + EN L +
Sbjct: 104 SVNSDKLENEGSVSSIDE--NELVDLDT--LLDNDQPEKNESGNNDHATDK---ENLLES 156
Query: 270 ADSSSINGKNELSNT-SDIYSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEI 328
SSS + ++E S++ S+I SS +++ + + V+ K E D SS+
Sbjct: 157 DASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLSSDD 216
Query: 329 SDS 331
+DS
Sbjct: 217 NDS 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.126 0.361
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,856,386
Number of extensions: 2357378
Number of successful extensions: 1509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 67
Length of query: 552
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 450
Effective length of database: 6,413,494
Effective search space: 2886072300
Effective search space used: 2886072300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.6 bits)