RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15335
(552 letters)
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Thermotoga maritima}
Length = 381
Score = 77.2 bits (191), Expect = 2e-15
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 346 RYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
P+ C C TC++ TR+YIHHL + E+L +LL+I N
Sbjct: 299 YNKRSLEPVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIHN 343
Score = 74.9 bits (185), Expect = 1e-14
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 15 IQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDK 74
+QGG+ LRR A + G+ I GL E + + E TV +LP DK
Sbjct: 195 VQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEER------SLTLEMTEVTVEFLPEDK 248
Query: 75 LRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFT 114
R G SP I++ V RG+DMFDS P +A G A T
Sbjct: 249 PRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALT 288
Score = 72.2 bits (178), Expect = 8e-14
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 511 RYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
P+ C C TC++ TR+YIHHL + E+L +LL+
Sbjct: 299 YNKRSLEPVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLT 340
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
metal-binding, queuosine biosynthesis, tRNA processing;
HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A*
1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A*
1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A*
1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Length = 386
Score = 76.8 bits (190), Expect = 2e-15
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 346 RYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
R+ D P+ +EC C CQ +RAYIHHL+ E+L +L++ N
Sbjct: 306 RFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHN 350
Score = 73.3 bits (181), Expect = 4e-14
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 15 IQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPNDK 74
QG + +LR+ A+ A G+ + GL EG D + VL+ +VP LP+DK
Sbjct: 202 QQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQ------DEMFRVLDFSVPMLPDDK 255
Query: 75 LRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFT 114
+ G P +IV V+RGIDMFD LP G AFT
Sbjct: 256 PHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFT 295
Score = 72.2 bits (178), Expect = 9e-14
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 511 RYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
R+ D P+ +EC C CQ +RAYIHHL+ E+L +L++
Sbjct: 306 RFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMT 347
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 75.1 bits (185), Expect = 2e-14
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 4 KALKDTCVIAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVL 63
+ +K+ + A IQG LRRY A ++ + I G+ DVV+ V+
Sbjct: 157 EEIKEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVV--PLLESYRFRDVVDIVI 214
Query: 64 ENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHI 121
++ L D+ + G P+ V G+D+FDS + A T + T+ +
Sbjct: 215 -SSKMALRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRL 271
Score = 54.3 bits (131), Expect = 7e-08
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 356 AECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
C C C +T + + + LL++ N
Sbjct: 277 FPCSCPVCSKYTPQELREMPKEERTR---LLALHN 308
Score = 52.0 bits (125), Expect = 3e-07
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 514 ADFTPILAECECLTCQHHTRAYIHHLLNTKEM 545
D+ P C C C +T + + +
Sbjct: 274 LDYFP----CSCPVCSKYTPQELREMPKEERT 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 4e-07
Identities = 77/575 (13%), Positives = 154/575 (26%), Gaps = 179/575 (31%)
Query: 31 YATRDV-----HGFLIDGLCADEGATEDLGCDVV-NAVLENTVPYLPNDKLRIIQGPW-- 82
Y +D+ F+ + C D +D+ ++ +++ + + ++ W
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIM-SKDAVSGTLRLFWTL 71
Query: 83 --SPMNIVQ-FVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIPLCNSSNGVSINGDKNGT 139
+VQ FV+ + + + L + + P S ++
Sbjct: 72 LSKQEEMVQKFVEEVLRI-NYKF---LMSP-----IKTEQRQP---SMMTRMYIEQRDRL 119
Query: 140 SNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSSI--------NGK----NELSNTSDI 187
N K VS L + +GK ++ + +
Sbjct: 120 YNDNQVFA--KYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 188 YSSMESDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQHPSI 247
M+ I +N + + +S + L E+ L
Sbjct: 177 QCKMDFKIFW--------LN---LKNCNSPETVL-----EMLQKLL------------YQ 208
Query: 248 NGKNGVSNEDSSSTNGENGLSNADSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIIN 307
N S D SS N I + + + ++ L++
Sbjct: 209 IDPNWTSRSDHSS------------------NIKLRIHSIQAELRRLLKSKPYENCLLV- 249
Query: 308 TDDVASKSSEKD------TLY-TKSSEISDSLYKPRQYEMWLQHPRYVTDFTP-----IL 355
+V + + L T+ +++D L + L H TP +L
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLL 307
Query: 356 AEC-----ECL---TCQHHTRAYIHHLLNTKEMLAPVLLSICNSS--NGVS-------IN 398
+ + L + P LSI S +G++ +N
Sbjct: 308 LKYLDCRPQDLPREVLTTN----------------PRRLSIIAESIRDGLATWDNWKHVN 351
Query: 399 GDKNGTSNGVPSSINGKN-----------GVSNED--------------SSSTNGE---N 430
DK + + SS+N V ++ N
Sbjct: 352 CDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 431 GLSNADSSSINGKNKLSNTS--DIY--SSMESDIHQSTHQEALIINTDDVASKSSEKDTL 486
L S + + K S S IY ++ + + H+ I++ ++ D +
Sbjct: 410 KLHK--YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDSDDLI 465
Query: 487 YTKS-----SEISDSLYKPRQYEMWLQHPRYVADF 516
S I L E DF
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Score = 44.8 bits (105), Expect = 6e-05
Identities = 54/411 (13%), Positives = 112/411 (27%), Gaps = 94/411 (22%)
Query: 20 DLSLRR--YCAELYATRDVHGFLIDGLCADEG------ATEDLGCDVVNAVLENTVPYLP 71
R + V F+ + L + TE ++ + L
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 72 NDKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHIPLCNSSNGVS 131
ND Q ++ N V R L L R + + V
Sbjct: 121 ND----NQ-VFAKYN----VSR--------LQPYLKLRQALLELR---------PAKNVL 154
Query: 132 INGDKNGT-----------SNGVPSSINGK----N-GVSNEDSSSTNGENGL-----SNA 170
I+G G+ S V ++ K N N + L N
Sbjct: 155 IDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 171 DSSSINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVASKSSEKD------TLY-T 223
S S + N I + + + ++ L++ +V + + L T
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTT 272
Query: 224 KSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSNADSSSING-KNELS 282
+ +++D L + L H S ++ ++ ++ L E+
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHS----MTLTPDEV-----KSLLLKYLDCRPQDLPREVL 323
Query: 283 NTSDIYSSM---ESDIHQSTHQEALIINTDDVAS---------KSSEKDTLYTKSSEISD 330
T+ S+ +T +N D + + + +E ++ + S
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 331 SLYKPRQ-YEM-WLQHPRYVTDFTPILAECE---CLTCQHHTRAY-IHHLL 375
S + P + W + ++ + + Q I +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPSIY 432
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 64/445 (14%), Positives = 116/445 (26%), Gaps = 172/445 (38%)
Query: 193 SDIHQSTHQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNG 252
+DIH AL A E DT K+ E+ + R + P
Sbjct: 99 NDIH------AL------AAKLLQENDTTLVKTKELIKNYITARIM---AKRP------- 136
Query: 253 VSNEDSSSTNGENGLSNADSSSIN--------GKN-----ELSNTSDIYSSMESD-IHQS 298
+ +S+ + G EL + Y + D I S
Sbjct: 137 FDKKSNSAL-----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 299 THQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMWLQHPRYVTDFTPILAEC 358
E L ++ + + + ++T+ I + WL++P D L
Sbjct: 192 A--ETL----SELIRTTLDAEKVFTQGLNILE----------WLENPSNTPD-KDYLLSI 234
Query: 359 E------CLTCQ--HHTRAYIHHLLNTKEMLAPVLLSICNSSNGVSINGDKNGTSNGVPS 410
+ Q H+ E+ + G + G S G+ +
Sbjct: 235 PISCPLIGVI-QLAHYVVTAKLLGFTPGELRS--------YLKGAT------GHSQGLVT 279
Query: 411 SI-------------NGKN--------GV-------------SNEDSSSTNGEN------ 430
++ + + GV S + S N E
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 431 ---GLSNAD-SSSINGKNK-LSNTSDIYSSMESDIHQSTHQEALIINTDD--VASKSSEK 483
L+ +N N L + I +L +N V S +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVE------I-------SL-VNGAKNLVVSGPPQ- 384
Query: 484 DTLY-----------TKSSEISDSLYKPRQYEMWLQHPRYVADFTPI--------LAECE 524
+LY + S + R+ ++ F P+ L
Sbjct: 385 -SLYGLNLTLRKAKAPSGLDQSRIPFSERK-------LKFSNRFLPVASPFHSHLLVPAS 436
Query: 525 CLTCQHHTRAYIHHLLNTKEMLAPV 549
L + + + N K++ PV
Sbjct: 437 DLINKDLVKNNV--SFNAKDIQIPV 459
Score = 42.7 bits (100), Expect = 3e-04
Identities = 86/540 (15%), Positives = 161/540 (29%), Gaps = 169/540 (31%)
Query: 71 PNDKLRIIQGPWSPMNIV----QFVQRGID-----MFDSGLPLVLADRGCAFTFQYTR-- 119
P + P +P +V +V ++ FD L L L + F Y
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGN 99
Query: 120 --HIPLCNSSNGVSINGDKNGTSNGVPSSINGKN-----GVSNEDSSSTNGENGL-SNAD 171
H + + + + T I KN ++ + L
Sbjct: 100 DIH------ALAAKLLQENDTTLVKTKELI--KNYITARIMAKR-PFDKKSNSALFRAVG 150
Query: 172 SSSIN--------GKN-----ELSNTSDIYSSMESD-IHQSTHQEALIINTDDVASKSSE 217
+ G EL + Y + D I S E L ++ + +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--ETL----SELIRTTLD 204
Query: 218 KDTLYTKSSEISDSLYKPRQYEMWLQHPSINGKNGVSNEDSSSTNGENGLSNADSS---- 273
+ ++T+ I + WL++P S+T ++ L + S
Sbjct: 205 AEKVFTQGLNILE----------WLENP-------------SNTPDKDYLLSIPISCPLI 241
Query: 274 --------SINGKNELSNTSDIYSSMESDIHQSTHQEALIINTDDVA---SKSSEKDTLY 322
+ K ++ S ++ + H + L+ A +++ ++ +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKG---ATGHSQGLV-----TAVAIAETDSWESFF 293
Query: 323 TKSSEISDSLYKPRQYEMWL------QHPRYVTDFTPILAECECLTCQHHTRAYIHHLLN 376
+ L+ ++ +P T P + E + L +
Sbjct: 294 VSVRKAITVLF-------FIGVRCYEAYPN--TSLPPSILE-DSLENNEGVPSP------ 337
Query: 377 TKEMLA------PVLLSICNSSNG-------VSI---NGDKNGTSNGVPSSINGKNGVSN 420
ML+ + N +N V I NG KN +G P S+ G N ++
Sbjct: 338 ---MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTL 393
Query: 421 EDSSSTNGENGLSNADSSSING---KNKLSNT---------SDIYSSMESDIHQSTHQEA 468
+ + +G D S I K K SN S + I++ +
Sbjct: 394 RKAKAPSG------LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 469 LIINTDD----VASKSSEKDTLYTKSSEISDSLY-----KPRQYEMWLQ-HPRYVADFTP 518
+ N D V D L S IS+ + P ++E Q ++ DF P
Sbjct: 448 VSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 40.8 bits (95), Expect = 0.001
Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 69/197 (35%)
Query: 5 ALK---DTCVIA-PIQG--GLDLSLRRYCAE--------LYATRD---VHGFL-IDG--- 43
+L V++ P Q GL+L+LR+ A ++ R + FL +
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 44 ---LCADEGATEDLGCDVVNAVLENTVPYLPNDKLRIIQGPWSPMNIVQFVQRGIDM--F 98
L A++ + D+V +N V + D ++I P V G D+
Sbjct: 429 SHLL---VPASDLINKDLV----KNNVSFNAKD-IQI---P------VYDTFDGSDLRVL 471
Query: 99 DSGLPLVLADRGCAFT----------FQYTRHI----PLCNSSNGVSINGDKNGTSNGV- 143
+ + D C F+ T HI P S GV + +K+GT GV
Sbjct: 472 SGSISERIVD--CIIRLPVKWETTTQFKAT-HILDFGPGGASGLGVLTHRNKDGT--GVR 526
Query: 144 ---PSSINGKNGVSNED 157
+++ ++D
Sbjct: 527 VIVAGTLDIN---PDDD 540
Score = 31.9 bits (72), Expect = 0.68
Identities = 43/270 (15%), Positives = 75/270 (27%), Gaps = 82/270 (30%)
Query: 288 YSSMESDIHQST--HQEALIINTDDVASKSSEKDTLYTKSSEISDSLYKPRQYEMW---L 342
+ S+E + T A + + E + E + E+ L
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPA------ELVGKFL 65
Query: 343 QH------PRYVTDFTPILAECECLTCQHHTRAY-----IHHLLNTKEMLAPVLLSICNS 391
+ P V F +L L Y IH LA LL
Sbjct: 66 GYVSSLVEPSKVGQFDQVLN----LCLTEFENCYLEGNDIH-------ALAAKLLQ---- 110
Query: 392 SNGVSINGDKNGTSNGVPSSINGKNGVSNEDSSSTNGENGLSNADSSSINGKNKL----- 446
N ++ K N + + I K + +S+ L A G +L
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------LFRAVGE---GNAQLVAIFG 161
Query: 447 --SNTSD-------IYSSMESDIHQSTHQEALIINTDDV----ASKSSEKDTLYTKSSEI 493
NT D +Y + + LI + + + + + ++T+ I
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLV------GDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 494 SDSLYKPRQYEMWLQHPRYVADFTPILAEC 523
+ WL++P D L
Sbjct: 216 LE----------WLENPSNTPD-KDYLLSI 234
Score = 30.0 bits (67), Expect = 3.0
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 25/60 (41%)
Query: 16 QG------GLDLSLRRYCAELYAT----RDVHGFLIDGLCADEGATEDLGCDVVNAVLEN 65
QG G+DL Y T +DV + + AD + G +++ V+ N
Sbjct: 1624 QGSQEQGMGMDL---------YKTSKAAQDV--W--NR--ADNHFKDTYGFSILDIVINN 1668
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.058
Identities = 11/40 (27%), Positives = 12/40 (30%), Gaps = 16/40 (40%)
Query: 317 EKDTLYTKSSEISDSLYKPRQYEMWLQHPRYVTDFTPILA 356
EK L K + S LY D P LA
Sbjct: 18 EKQAL--KKLQASLKLYAD--------------DSAPALA 41
Score = 33.8 bits (76), Expect = 0.058
Identities = 11/40 (27%), Positives = 12/40 (30%), Gaps = 16/40 (40%)
Query: 482 EKDTLYTKSSEISDSLYKPRQYEMWLQHPRYVADFTPILA 521
EK L K + S LY D P LA
Sbjct: 18 EKQAL--KKLQASLKLYAD--------------DSAPALA 41
Score = 28.8 bits (63), Expect = 3.2
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 10/35 (28%)
Query: 217 EKDTLYTKSSEISDSLYKPRQYEMWLQHP--SING 249
EK L K + S LY P +I
Sbjct: 18 EKQAL--KKLQASLKLYADD------SAPALAIKA 44
>3npg_A Uncharacterized DUF364 family protein; protein with unknown
function from DUF364 family, structural genomics; 2.70A
{Pyrococcus horikoshii}
Length = 249
Score = 29.6 bits (66), Expect = 2.4
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 4/90 (4%)
Query: 12 IAPIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDL----GCDVVNAVLENTV 67
+ P+ L Y E D L D +VN L+ +
Sbjct: 125 MPPVVRTLKEKYEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMIL 184
Query: 68 PYLPNDKLRIIQGPWSPMNIVQFVQRGIDM 97
KL +I GP + +
Sbjct: 185 DRAKKAKLIVITGPTGQLLPEFLKGTKVTH 214
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain,
C-type heme containing sensor, unknown function,
signaling protein; HET: HEM; 1.90A {Geobacter
sulfurreducens}
Length = 135
Score = 27.3 bits (60), Expect = 7.1
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Query: 425 STNGENGLSNADSSSINGKNKLSNTSDIYSSMESDIHQSTHQEAL-IINTDDVASKSSEK 483
L+ I+G + S S + L + + +
Sbjct: 7 QLKNARNLAGLIIHDIDG-YMMKGDSSEVDRFISAVKSKNFIMDLRVFDEQAKEVSPTPS 65
Query: 484 DTLYTKSSEISDSLYKPRQYEMWLQHPRYVADFTPILAECECLTC 528
T K + + + +++ L R ++ P E C +C
Sbjct: 66 QTPNAKIQQAIAA-GRTLEFKETLDGKRTLSLVLPFPNEQRCQSC 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.126 0.361
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,794,028
Number of extensions: 443314
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 38
Length of query: 552
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 454
Effective length of database: 3,965,535
Effective search space: 1800352890
Effective search space used: 1800352890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.4 bits)