RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15335
         (552 letters)



>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 74.1 bits (181), Expect = 6e-15
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 342 LQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
           +++ R+  D  P+ +EC C  CQ  +RAYIHHL+   E+L  +L++  N
Sbjct: 292 IRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHN 340



 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 507 LQHPRYVADFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLS 552
           +++ R+  D  P+ +EC C  CQ  +RAYIHHL+   E+L  +L++
Sbjct: 292 IRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMT 337


>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
           transglycosylase, N-terminal domain {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 355

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 13  APIQGGLDLSLRRYCAELYATRDVHGFLIDGLCADEGATEDLGCDVVNAVLENTVPYLPN 72
           A IQG     LRRY A   ++ +     I G+     +      DVV+ V+ +    L  
Sbjct: 161 ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYR--FRDVVDIVISSK-MALRP 217

Query: 73  DKLRIIQGPWSPMNIVQFVQRGIDMFDSGLPLVLADRGCAFTFQYTRHI 121
           D+   + G   P+     V  G+D+FDS    + A      T + T+ +
Sbjct: 218 DRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRL 266



 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 356 AECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICN 390
             C C  C  +T   +  +   +      LL++ N
Sbjct: 272 FPCSCPVCSKYTPQELREMPKEERTR---LLALHN 303



 Score = 37.5 bits (86), Expect = 0.003
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 521 AECECLTCQHHTRAYIHHLLNTKEM 545
             C C  C  +T   +  +   +  
Sbjct: 272 FPCSCPVCSKYTPQELREMPKEERT 296


>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
           yoelii [TaxId: 5861]}
          Length = 357

 Score = 27.5 bits (60), Expect = 4.0
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 10/86 (11%)

Query: 335 PRQYEMWLQHPRYVTDFTPILAECECLTCQHHTRAYIHHLLNTKEMLAPVLLSICNSSNG 394
               +  L +   +      +         H  R      L        +LL +C  SN 
Sbjct: 220 HAGEDATLPNLNTLYTA---INILNVERIGHGIRVSESDELIELVKKKDILLEVCPISNL 276

Query: 395 VSINGDKNGT-------SNGVPSSIN 413
           +  N     T         GV  S+N
Sbjct: 277 LLNNVKSMDTHPIRKLYDAGVKVSVN 302


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.126    0.361 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,865,328
Number of extensions: 81981
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 12
Length of query: 552
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 462
Effective length of database: 1,171,896
Effective search space: 541415952
Effective search space used: 541415952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.1 bits)