Query psy15337
Match_columns 93
No_of_seqs 118 out of 1042
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:21:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02740 protein tyrosine phos 99.9 1.7E-25 3.7E-30 155.3 8.3 70 1-73 224-293 (298)
2 PHA02742 protein tyrosine phos 99.9 1.2E-24 2.7E-29 151.3 8.4 70 1-73 232-301 (303)
3 PHA02738 hypothetical protein; 99.9 9.8E-24 2.1E-28 147.7 8.2 72 1-75 230-301 (320)
4 PHA02746 protein tyrosine phos 99.9 1.4E-23 3E-28 147.1 7.9 68 1-71 250-317 (323)
5 PHA02747 protein tyrosine phos 99.9 2.6E-23 5.7E-28 145.1 8.1 69 1-72 232-303 (312)
6 KOG0790|consensus 99.9 1.9E-22 4.1E-27 144.5 4.5 80 1-80 454-533 (600)
7 smart00194 PTPc Protein tyrosi 99.8 1.8E-20 3.9E-25 127.2 6.5 62 1-65 196-257 (258)
8 PF00102 Y_phosphatase: Protei 99.8 5.5E-20 1.2E-24 122.0 7.5 63 1-66 173-235 (235)
9 cd00047 PTPc Protein tyrosine 99.8 7E-20 1.5E-24 122.4 7.0 62 1-65 169-230 (231)
10 KOG0792|consensus 99.8 5.9E-20 1.3E-24 141.0 6.2 73 1-76 1066-1138(1144)
11 smart00012 PTPc_DSPc Protein t 99.8 1.8E-19 4E-24 106.3 6.9 62 1-65 42-104 (105)
12 smart00404 PTPc_motif Protein 99.8 1.8E-19 4E-24 106.3 6.9 62 1-65 42-104 (105)
13 KOG0791|consensus 99.8 2E-19 4.4E-24 126.2 6.5 70 1-73 290-359 (374)
14 COG5599 PTP2 Protein tyrosine 99.8 6E-20 1.3E-24 124.6 1.9 68 1-68 221-294 (302)
15 KOG4228|consensus 99.8 2.1E-19 4.5E-24 138.7 3.2 70 1-73 733-802 (1087)
16 KOG4228|consensus 99.7 5.9E-18 1.3E-22 130.7 5.0 66 1-69 1021-1086(1087)
17 KOG0789|consensus 99.7 6.1E-17 1.3E-21 115.6 7.0 70 1-72 302-371 (415)
18 PRK15375 pathogenicity island 99.7 1.9E-16 4E-21 115.6 7.7 61 2-69 470-531 (535)
19 KOG0793|consensus 99.6 1.5E-16 3.3E-21 119.1 4.0 71 1-73 930-1000(1004)
20 PTZ00242 protein tyrosine phos 99.5 8.9E-14 1.9E-18 89.7 6.5 56 1-65 101-156 (166)
21 KOG1720|consensus 99.5 1.8E-13 4E-18 90.5 7.6 64 1-72 150-213 (225)
22 PTZ00393 protein tyrosine phos 99.3 7.9E-12 1.7E-16 84.5 6.6 55 1-65 173-227 (241)
23 smart00195 DSPc Dual specifici 99.1 2.7E-10 5.9E-15 70.7 6.9 54 1-62 81-134 (138)
24 cd00127 DSPc Dual specificity 99.1 2.6E-10 5.7E-15 70.4 6.6 53 1-61 84-136 (139)
25 PF00782 DSPc: Dual specificit 99.1 2.7E-10 5.8E-15 70.1 6.2 55 1-63 76-130 (133)
26 COG2453 CDC14 Predicted protei 99.1 8.6E-10 1.9E-14 71.9 7.3 60 1-67 108-167 (180)
27 PRK12361 hypothetical protein; 98.6 2.1E-07 4.5E-12 69.4 6.4 57 1-64 178-234 (547)
28 KOG1719|consensus 98.5 6.1E-07 1.3E-11 57.4 6.0 54 2-63 113-166 (183)
29 KOG2836|consensus 98.2 5.2E-07 1.1E-11 56.6 1.7 50 1-60 100-149 (173)
30 KOG1718|consensus 98.0 2.2E-05 4.9E-10 51.0 5.2 47 1-55 97-143 (198)
31 KOG1716|consensus 97.9 5.1E-05 1.1E-09 52.7 6.7 46 1-54 158-203 (285)
32 PF05706 CDKN3: Cyclin-depende 97.8 1.3E-05 2.8E-10 51.9 2.6 21 1-21 136-156 (168)
33 PF03162 Y_phosphatase2: Tyros 97.6 0.0001 2.2E-09 47.6 4.1 36 1-45 94-129 (164)
34 KOG1717|consensus 97.3 0.00053 1.2E-08 47.7 4.4 45 1-53 254-298 (343)
35 KOG2283|consensus 97.1 0.00023 4.9E-09 52.3 1.5 58 1-65 110-172 (434)
36 TIGR01244 conserved hypothetic 97.0 0.0016 3.5E-08 40.5 4.6 39 1-49 89-127 (135)
37 PF13350 Y_phosphatase3: Tyros 97.0 0.00061 1.3E-08 43.5 2.8 22 1-22 127-148 (164)
38 COG5350 Predicted protein tyro 97.0 0.0017 3.7E-08 41.7 4.5 50 1-57 96-145 (172)
39 COG2365 Protein tyrosine/serin 95.5 0.012 2.6E-07 40.2 2.6 24 1-24 139-162 (249)
40 PLN02727 NAD kinase 95.1 0.019 4.2E-07 45.8 2.9 22 1-22 344-365 (986)
41 KOG4471|consensus 93.9 0.052 1.1E-06 41.6 2.6 59 1-59 377-470 (717)
42 KOG2386|consensus 93.6 0.031 6.7E-07 40.8 1.0 55 1-63 127-181 (393)
43 PF06602 Myotub-related: Myotu 91.5 0.21 4.5E-06 36.0 2.9 22 1-22 234-255 (353)
44 KOG1572|consensus 91.1 0.15 3.3E-06 35.0 1.8 35 1-44 151-185 (249)
45 KOG1089|consensus 88.0 0.48 1E-05 36.3 2.6 21 1-21 347-367 (573)
46 cd01518 RHOD_YceA Member of th 60.7 7.8 0.00017 22.1 1.9 14 1-15 64-77 (101)
47 COG5495 Uncharacterized conser 54.6 7 0.00015 27.2 1.1 15 1-16 94-108 (289)
48 cd01523 RHOD_Lact_B Member of 53.1 13 0.00027 21.1 1.9 13 1-14 64-76 (100)
49 COG0607 PspE Rhodanese-related 52.2 12 0.00025 21.4 1.7 12 1-13 64-75 (110)
50 PLN02160 thiosulfate sulfurtra 50.5 15 0.00032 22.7 2.0 13 1-14 84-96 (136)
51 TIGR00853 pts-lac PTS system, 42.5 38 0.00083 19.6 2.9 65 1-70 6-73 (95)
52 cd01533 4RHOD_Repeat_2 Member 42.0 26 0.00056 20.2 2.1 12 1-13 69-80 (109)
53 PF10351 Apt1: Golgi-body loca 41.8 44 0.00096 24.8 3.7 29 50-78 48-76 (457)
54 cd05567 PTS_IIB_mannitol PTS_I 40.6 28 0.00061 19.5 2.1 12 1-12 3-14 (87)
55 PF02302 PTS_IIB: PTS system, 38.5 47 0.001 18.3 2.8 13 1-13 2-14 (90)
56 PF01443 Viral_helicase1: Vira 37.6 38 0.00081 22.0 2.6 17 1-17 1-17 (234)
57 cd00126 PAH Pancreatic Hormone 35.3 59 0.0013 15.7 3.5 26 46-71 6-31 (36)
58 smart00309 PAH Pancreatic horm 33.8 63 0.0014 15.6 3.5 27 45-71 5-31 (36)
59 cd01443 Cdc25_Acr2p Cdc25 enzy 33.5 30 0.00065 20.1 1.5 14 1-14 69-82 (113)
60 TIGR03865 PQQ_CXXCW PQQ-depend 32.2 39 0.00084 21.5 1.9 14 1-14 119-132 (162)
61 cd01530 Cdc25 Cdc25 phosphatas 31.5 42 0.00092 20.0 1.9 14 1-14 71-84 (121)
62 PF08234 Spindle_Spc25: Chromo 30.3 54 0.0012 18.0 2.1 34 2-46 38-71 (74)
63 PF13476 AAA_23: AAA domain; P 29.4 68 0.0015 20.0 2.7 23 1-23 22-44 (202)
64 PF12466 GDH_N: Glutamate dehy 29.0 41 0.00089 18.0 1.3 26 31-56 30-55 (60)
65 PF13086 AAA_11: AAA domain; P 28.8 88 0.0019 19.9 3.2 21 2-22 21-41 (236)
66 PF13555 AAA_29: P-loop contai 28.5 1E+02 0.0022 16.5 2.9 21 2-22 27-47 (62)
67 cd01448 TST_Repeat_1 Thiosulfa 28.4 55 0.0012 19.1 2.0 14 1-15 82-95 (122)
68 cd01525 RHOD_Kc Member of the 28.3 43 0.00093 18.9 1.5 14 1-15 68-81 (105)
69 PRK10287 thiosulfate:cyanide s 28.3 44 0.00096 19.6 1.6 14 1-15 63-76 (104)
70 cd01529 4RHOD_Repeats Member o 27.0 54 0.0012 18.3 1.8 13 1-14 59-71 (96)
71 cd01526 RHOD_ThiF Member of th 25.9 54 0.0012 19.3 1.7 12 1-13 75-86 (122)
72 PF01695 IstB_IS21: IstB-like 25.7 1.3E+02 0.0028 19.3 3.5 45 1-47 50-94 (178)
73 PHA03338 US22 family homolog; 25.2 50 0.0011 23.7 1.6 16 2-17 160-175 (344)
74 cd01519 RHOD_HSP67B2 Member of 23.6 72 0.0016 17.9 1.9 12 1-13 69-80 (106)
75 cd01447 Polysulfide_ST Polysul 23.5 63 0.0014 18.0 1.6 12 1-13 64-75 (103)
76 TIGR02981 phageshock_pspE phag 22.3 78 0.0017 18.4 1.9 14 1-15 61-74 (101)
77 cd00133 PTS_IIB PTS_IIB: subun 22.0 74 0.0016 16.7 1.6 13 1-13 2-14 (84)
78 COG5104 PRP40 Splicing factor 21.9 3.5E+02 0.0077 20.8 5.4 33 21-53 152-184 (590)
79 smart00400 ZnF_CHCC zinc finge 21.8 1.3E+02 0.0028 15.3 2.9 31 3-43 24-54 (55)
80 COG4992 ArgD Ornithine/acetylo 20.8 53 0.0011 24.5 1.0 14 7-20 228-241 (404)
81 cd01534 4RHOD_Repeat_3 Member 20.7 1E+02 0.0022 17.1 2.1 12 1-13 59-70 (95)
82 PF00159 Hormone_3: Pancreatic 20.7 1.2E+02 0.0027 14.6 3.6 26 45-70 5-30 (36)
83 TIGR02764 spore_ybaN_pdaB poly 20.2 1.6E+02 0.0035 18.7 3.2 27 1-29 155-181 (191)
No 1
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=1.7e-25 Score=155.32 Aligned_cols=70 Identities=17% Similarity=0.472 Sum_probs=67.0
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVR 73 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~ 73 (93)
|||||++|+||||+||++|++++++..++ .+|++++++++|+||++++++.+||.|+|+++++|+....+
T Consensus 224 IVVHCSaGvGRTGtFcaiDi~l~~~~~~~---~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~~~ 293 (298)
T PHA02740 224 IIIDCIDGISSSAVFCVFDICATEFDKTG---MLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEKFD 293 (298)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHhcC---cccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHhhc
Confidence 69999999999999999999999999999 99999999999999999999999999999999999987643
No 2
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=1.2e-24 Score=151.26 Aligned_cols=70 Identities=31% Similarity=0.580 Sum_probs=66.8
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVR 73 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~ 73 (93)
|||||++|+||||+||++|++++++..++ .+|++++++.+|+||+++|+|.+||.|+|+++++|++....
T Consensus 232 IvVHCsaGvGRTGtF~aid~~i~~~~~~~---~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~~ 301 (303)
T PHA02742 232 ILVHCSAGLDRAGAFCAIDICISKYNERA---IIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLMAD 301 (303)
T ss_pred eEEECCCCCchhHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999999999988 99999999999999999999999999999999999987553
No 3
>PHA02738 hypothetical protein; Provisional
Probab=99.90 E-value=9.8e-24 Score=147.73 Aligned_cols=72 Identities=33% Similarity=0.568 Sum_probs=68.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCchh
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVRHE 75 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~~~ 75 (93)
|||||++|+||||+|||+|++++++..++ .+|++++++.+|+||++++++.+||.|+|+++++|+.....+.
T Consensus 230 IVVHCs~GiGRtGtFcaidi~i~~~~~~~---~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~~~~~~~ 301 (320)
T PHA02738 230 IVVHCNAGLGRTPCYCVVDISISRFDACA---TVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTVNKV 301 (320)
T ss_pred eEEEcCCCCChhhhhhHHHHHHHHHHhcC---CcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCchh
Confidence 68999999999999999999999999999 9999999999999999999999999999999999998766553
No 4
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=1.4e-23 Score=147.11 Aligned_cols=68 Identities=38% Similarity=0.627 Sum_probs=65.0
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGG 71 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~ 71 (93)
|||||++|+||||+||++|++++++..++ .+|++++++.||+||+++++|.+||.|+|+++.+++...
T Consensus 250 IvVHCsaGvGRTGtfcaid~~l~~l~~~~---~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l~~~ 317 (323)
T PHA02746 250 IVVHCSAGIGRAGTFCAIDNALEQLEKEK---EVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAIIEE 317 (323)
T ss_pred EEEEcCCCCCcchhHHHHHHHHHHHHhcC---CCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999 999999999999999999999999999999999997543
No 5
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=2.6e-23 Score=145.13 Aligned_cols=69 Identities=33% Similarity=0.643 Sum_probs=65.9
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHH---HHHHHHHHHcCC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI---YECVQVYLQGGV 72 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~---~~~vl~~~~~~~ 72 (93)
|||||++|+||||+||++|++++++..++ .+|++++++.+|+||+++|+|.+||.|+ |+++.+|+....
T Consensus 232 IvVHCsaGvGRtGtfcaidi~i~~l~~~~---~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~~~~~ 303 (312)
T PHA02747 232 IVVHCSDGVGKTGIFCAVDICLNQLVKRK---AICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKIK 303 (312)
T ss_pred EEEEecCCCcchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999998 9999999999999999999999999999 999999887663
No 6
>KOG0790|consensus
Probab=99.86 E-value=1.9e-22 Score=144.47 Aligned_cols=80 Identities=41% Similarity=0.667 Sum_probs=74.1
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCchhhhhhh
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVRHERQIQN 80 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~~~~~~~~ 80 (93)
||||||+|+||||+|+++|++++++.+++..|.+|+..+++.+|.||.|++||..||.|+|.++..|+..........++
T Consensus 454 IvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~~r~e~eq~ 533 (600)
T KOG0790|consen 454 IVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQKRIEEEQK 533 (600)
T ss_pred EEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999887766444333
No 7
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.82 E-value=1.8e-20 Score=127.23 Aligned_cols=62 Identities=56% Similarity=0.928 Sum_probs=60.2
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl 65 (93)
|+|||++|+||||+||+++++++++..++ .+|+.++++.+|++|++++++.+||.|+|.+++
T Consensus 196 ivVHC~~G~gRsg~f~a~~~~~~~l~~~~---~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~ 257 (258)
T smart00194 196 IVVHCSAGVGRTGTFIAIDILLQQLEAGK---EVDIFEIVKELRSQRPGMVQTEEQYIFLYRAIL 257 (258)
T ss_pred EEEEeCCCCCccchhhHHHHHHHHHHHcC---CCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 68999999999999999999999999988 999999999999999999999999999999986
No 8
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.81 E-value=5.5e-20 Score=121.97 Aligned_cols=63 Identities=46% Similarity=0.763 Sum_probs=61.3
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQV 66 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~ 66 (93)
++|||++|+||||+|++++++++++..++ .+|+.++++.+|++|++++++.+||.|+|.+++|
T Consensus 173 ivVhc~~G~gRsg~f~~~~~~~~~~~~~~---~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~~e 235 (235)
T PF00102_consen 173 IVVHCSDGVGRSGTFCAIDILIEQLKKEG---EVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAVLE 235 (235)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHHHHHS---EECHHHHHHHHHTTSTTSSSSHHHHHHHHHHHHH
T ss_pred eEeecccccccccccccchhhcccccccc---chhhHHHHHHHHhhCCCccCCHHHHHHHHHHHhC
Confidence 58999999999999999999999999999 9999999999999999999999999999999986
No 9
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.81 E-value=7e-20 Score=122.44 Aligned_cols=62 Identities=56% Similarity=0.908 Sum_probs=60.2
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl 65 (93)
|+|||++|+||||+||+++++++++..++ .+++.++++.+|++|++++++.+||.|+|++++
T Consensus 169 ivVHC~~G~gRsg~~~a~~~~~~~~~~~~---~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~ 230 (231)
T cd00047 169 IVVHCSAGVGRTGTFIAIDILLQRLEAEG---VVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230 (231)
T ss_pred eEEECCCCCCccchHHHHHHHHHHHHhcC---CCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 68999999999999999999999999888 999999999999999999999999999999986
No 10
>KOG0792|consensus
Probab=99.80 E-value=5.9e-20 Score=141.02 Aligned_cols=73 Identities=47% Similarity=0.770 Sum_probs=68.6
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCchhh
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVRHER 76 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~~~~ 76 (93)
|||||++|+||||+++.+|+++..++.+. .+|+.++++.||.||..+|||..||.|+|++++.++++..-...
T Consensus 1066 ilvHCSAGiGRTGVlIl~e~~l~lle~Ne---~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~l~~~~l~~~ 1138 (1144)
T KOG0792|consen 1066 ILVHCSAGIGRTGVLILMETALCLLEHNE---PVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVLKRGRLIPL 1138 (1144)
T ss_pred eEEEccCCCCcceehHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHHHhcccccc
Confidence 69999999999999999999999999998 99999999999999999999999999999999999987765443
No 11
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.80 E-value=1.8e-19 Score=106.30 Aligned_cols=62 Identities=55% Similarity=0.928 Sum_probs=58.9
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNS-ERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~-~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl 65 (93)
|+|||.+|.||||+|+++++++.++..+ . .+++.++++.+|++|++++++.+||.|+|.+++
T Consensus 42 vlVHC~~G~gRtg~~~~~~~~~~~~~~~~~---~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00012 42 VVVHCSAGVGRTGTFVALDILLQQLESETG---EVDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 6899999999999999999999998876 6 899999999999999999999999999999886
No 12
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.80 E-value=1.8e-19 Score=106.30 Aligned_cols=62 Identities=55% Similarity=0.928 Sum_probs=58.9
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNS-ERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~-~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl 65 (93)
|+|||.+|.||||+|+++++++.++..+ . .+++.++++.+|++|++++++.+||.|+|.+++
T Consensus 42 vlVHC~~G~gRtg~~~~~~~~~~~~~~~~~---~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00404 42 VVVHCSAGVGRTGTFVALDILLQQLESETG---EVDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 6899999999999999999999998876 6 899999999999999999999999999999886
No 13
>KOG0791|consensus
Probab=99.79 E-value=2e-19 Score=126.19 Aligned_cols=70 Identities=56% Similarity=0.889 Sum_probs=67.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVR 73 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~ 73 (93)
++|||++|+||||||+++|.+++++..+. .+|+++++..+|..|+.++||..||.|+|.++++.+..+..
T Consensus 290 ~iVhCSAGVgRTGTFiald~LLqq~~~~~---~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 290 TIVHCSAGVGRTGTFIALDRLLQQIDSEE---TVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred eeEEeecccccccchHhHHHHHHHhcccc---cccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999887 99999999999999999999999999999999999988876
No 14
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.78 E-value=6e-20 Score=124.60 Aligned_cols=68 Identities=46% Similarity=0.755 Sum_probs=57.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCC-CC----Cccc-HHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSE-RA----GSVD-ILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYL 68 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~-~~----~~~~-v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~ 68 (93)
++|||++|+||||||+++|.+++...... +. .+.| +++++..+|+||+.+||+..||.|+|.+++++.
T Consensus 221 iiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 221 IIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred EEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 58999999999999999999998754331 00 0112 789999999999999999999999999999988
No 15
>KOG4228|consensus
Probab=99.76 E-value=2.1e-19 Score=138.65 Aligned_cols=70 Identities=50% Similarity=0.712 Sum_probs=67.0
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVR 73 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~ 73 (93)
+|||||+|+||||+|+++|.+++++++++ .+|+++.++.||.||..++||.+||.|+|++++++......
T Consensus 733 iVVHCSAGvGRTG~fi~iDaml~~~~~e~---~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T 802 (1087)
T KOG4228|consen 733 IVVHCSAGVGRTGCFIVIDAMLDRLECEG---KVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGDT 802 (1087)
T ss_pred EEEECCCCCCCcceEEEeHHHHHHHHhhC---ccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCCc
Confidence 69999999999999999999999999999 99999999999999999999999999999999999876653
No 16
>KOG4228|consensus
Probab=99.72 E-value=5.9e-18 Score=130.73 Aligned_cols=66 Identities=42% Similarity=0.733 Sum_probs=64.1
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQ 69 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~ 69 (93)
++|||++|+||+|+||++.+++++++.++ .+||+.+++.||.+||+++++.+||.|||+++++|+.
T Consensus 1021 ~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~---~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1021 IIVHCLNGVGRTGTFCAISILLERMRKEG---VVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEYLG 1086 (1087)
T ss_pred EEEEEcCCCcceeehHHHHHHHHHHhhcC---ceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHhhc
Confidence 58999999999999999999999999999 9999999999999999999999999999999999974
No 17
>KOG0789|consensus
Probab=99.69 E-value=6.1e-17 Score=115.64 Aligned_cols=70 Identities=39% Similarity=0.617 Sum_probs=62.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGV 72 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~ 72 (93)
++|||++|+||||+|+++++++.++...+ ...++..++..+|.+|++++++..||.|+|.++++|+....
T Consensus 302 ~vVhcsaG~gRtgt~v~~~~~~~~~~~~~--~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~~~ 371 (415)
T KOG0789|consen 302 IEVHCSAGAGRAGTLVLIEHALIELQGPE--GEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKKVS 371 (415)
T ss_pred eEEECCCCCCccchHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHcc
Confidence 58999999999999999998888875433 16779999999999999999999999999999999998744
No 18
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.67 E-value=1.9e-16 Score=115.63 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=53.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCC-CcccHHHHHHHHHHHHHHHH
Q psy15337 2 VVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVL-MVQSLAQYVYIYECVQVYLQ 69 (93)
Q Consensus 2 vVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~-~v~t~~qy~f~~~~vl~~~~ 69 (93)
||||++|+||||+||+++.+ ..+. .+++.++++.+|.+|++ +||+.+||.++++.-...+.
T Consensus 470 VVHCSAGVGRTGTFIAi~ll----k~~~---~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 470 MIHCLGGVGRTGTMAAALVL----KDNP---HSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred eEEcCCCCchHHHHHHHHHH----hccc---cCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhh
Confidence 79999999999999999873 3345 79999999999999999 99999999999988665543
No 19
>KOG0793|consensus
Probab=99.64 E-value=1.5e-16 Score=119.06 Aligned_cols=71 Identities=35% Similarity=0.594 Sum_probs=64.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCCc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGVR 73 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~~ 73 (93)
|+||||+|.||||++|++|+++.+|.++- -.+||..++..+|.||+|+|.|.+||.|++-++.+-+....+
T Consensus 930 IiVH~sdGaGRTG~YiliDmvl~Rm~kGa--keIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEVnaiLK 1000 (1004)
T KOG0793|consen 930 IIVHCSDGAGRTGTYILIDMVLNRMAKGA--KEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEVNAILK 1000 (1004)
T ss_pred eEEEccCCCCccceeeeHHHHHHHHhccc--hhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999987643 389999999999999999999999999999999987765544
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.49 E-value=8.9e-14 Score=89.72 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=48.2
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl 65 (93)
|+|||.+|+||||+||+++++.. + .+++.++++.+|+.||+++ +..|+.|+.+...
T Consensus 101 V~VHC~aGigRSgt~~a~yL~~~-----~---~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 101 IAVHCVAGLGRAPILVALALVEY-----G---GMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKP 156 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHH
Confidence 58999999999999999986532 2 5799999999999999998 5899999977653
No 21
>KOG1720|consensus
Probab=99.48 E-value=1.8e-13 Score=90.46 Aligned_cols=64 Identities=30% Similarity=0.380 Sum_probs=56.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHcCC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQGGV 72 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~~~ 72 (93)
|.|||.+|.||||+++|++++... .++..+++..+|..||++|++++|+-.+++...-|+....
T Consensus 150 iaVHCkaGlGRTG~liAc~lmy~~--------g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~~~~~ 213 (225)
T KOG1720|consen 150 IAVHCKAGLGRTGTLIACYLMYEY--------GMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWLAGDL 213 (225)
T ss_pred EEEEeccCCCchhHHHHHHHHHHh--------CCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhhcc
Confidence 579999999999999999999874 7889999999999999999999999999888765554443
No 22
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.30 E-value=7.9e-12 Score=84.48 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=46.8
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl 65 (93)
|+|||.+|.||||++++++++- . .++..+++..+|+.||+++ +..|+.|+.+.--
T Consensus 173 VaVHC~AGlGRTGtl~AayLI~------~---GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~ 227 (241)
T PTZ00393 173 VAVHCVAGLGRAPVLASIVLIE------F---GMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKK 227 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------c---CCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Confidence 6899999999999999887653 1 5789999999999999998 5789998876544
No 23
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.13 E-value=2.7e-10 Score=70.65 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=46.8
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYE 62 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~ 62 (93)
|+|||.+|.||||++++++++... .+++.++++.+|..||.+..+..|...+..
T Consensus 81 VlVHC~~G~~RS~~v~~~yl~~~~--------~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~ 134 (138)
T smart00195 81 VLVHCQAGVSRSATLIIAYLMKYR--------NLSLNDAYDFVKDRRPIISPNFGFLRQLIE 134 (138)
T ss_pred EEEECCCCCchHHHHHHHHHHHHh--------CCCHHHHHHHHHHHCCccCCCHhHHHHHHH
Confidence 589999999999999998877654 678999999999999999888888776643
No 24
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.12 E-value=2.6e-10 Score=70.42 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=45.2
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIY 61 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~ 61 (93)
|+|||.+|.||||++++.+++... .+++.++++.+|+.||....+..+...+.
T Consensus 84 vlVHC~~G~~Rs~~~~~~~l~~~~--------~~~~~~a~~~vr~~r~~~~~~~~~~~~l~ 136 (139)
T cd00127 84 VLVHCLAGVSRSATLVIAYLMKTL--------GLSLREAYEFVKSRRPIISPNAGFMRQLK 136 (139)
T ss_pred EEEECCCCCchhHHHHHHHHHHHc--------CCCHHHHHHHHHHHCCccCCCHHHHHHHH
Confidence 589999999999999998877654 67899999999999998888877766554
No 25
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.11 E-value=2.7e-10 Score=70.14 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=48.1
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYEC 63 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~ 63 (93)
|+|||..|.||||++++++++... .+++.++++.+|+.||.+..+..++..++..
T Consensus 76 VlVHC~~G~~RS~~v~~ayLm~~~--------~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~ 130 (133)
T PF00782_consen 76 VLVHCKAGLSRSGAVAAAYLMKKN--------GMSLEEAIEYVRSRRPQINPNPSFIRQLYEY 130 (133)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH--------TSSHHHHHHHHHHHSTTSTHHHHHHHHHHHH
T ss_pred eEEEeCCCcccchHHHHHHHHHHc--------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHh
Confidence 589999999999999998887754 6799999999999999999888888776653
No 26
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.06 E-value=8.6e-10 Score=71.87 Aligned_cols=60 Identities=30% Similarity=0.309 Sum_probs=50.5
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECVQVY 67 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~ 67 (93)
|+|||..|+|||||+++.++++.. + .....+++..+|..|++.+.+..|+.|..+.....
T Consensus 108 VvVHC~~GigRSgtviaA~lm~~~----~---~~~~~~~i~~~~~~r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 108 VVVHCQGGIGRSGTVIAAYLMLYG----G---LSLADEAIAVKRRRRPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred EEEEcCCCCchHHHHHHHHHHHHc----C---CCCHHHHHHHHHhcCCcccccHHHHHHHHHHHHHH
Confidence 689999999999999998888763 2 55677888889999999999999999888776543
No 27
>PRK12361 hypothetical protein; Provisional
Probab=98.55 E-value=2.1e-07 Score=69.45 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=48.2
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYECV 64 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~v 64 (93)
|+|||..|.|||+++++.+++... . ..++.++++.+|+.||.+..+..|...+....
T Consensus 178 VlVHC~~G~sRSa~vv~ayLm~~~----~---~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~ 234 (547)
T PRK12361 178 VVVHCALGRGRSVLVLAAYLLCKD----P---DLTVEEVLQQIKQIRKTARLNKRQLRALEKML 234 (547)
T ss_pred EEEECCCCCCcHHHHHHHHHHHhc----c---CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 589999999999999998876532 2 57899999999999999999999887766543
No 28
>KOG1719|consensus
Probab=98.47 E-value=6.1e-07 Score=57.45 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=47.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q psy15337 2 VVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYEC 63 (93)
Q Consensus 2 vVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~ 63 (93)
-|||.+|-+||.|+++|+++.+. .+....++..+|+.||...-.+.|+.-+-+.
T Consensus 113 YVHCKAGRtRSaTvV~cYLmq~~--------~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef 166 (183)
T KOG1719|consen 113 YVHCKAGRTRSATVVACYLMQHK--------NWTPEAAVEHVRKIRPRVLLRPAQWDVLKEF 166 (183)
T ss_pred EEEecCCCccchhhhhhhhhhhc--------CCCHHHHHHHHHhcCcceeecHHHHHHHHHH
Confidence 49999999999999999988764 7889999999999999999999998654433
No 29
>KOG2836|consensus
Probab=98.23 E-value=5.2e-07 Score=56.63 Aligned_cols=50 Identities=30% Similarity=0.523 Sum_probs=39.6
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~ 60 (93)
|.|||-+|+||+.+++|+.++-.. +.-.+++..+|++|.|++++ .|..|+
T Consensus 100 vavhcvaglgrapvlvalalie~g---------mkyedave~ir~krrga~n~-kql~~l 149 (173)
T KOG2836|consen 100 VAVHCVAGLGRAPVLVALALIEAG---------MKYEDAVEMIRQKRRGAINS-KQLLYL 149 (173)
T ss_pred EEEEeecccCcchHHHHHHHHHcc---------ccHHHHHHHHHHHhhccccH-HHHHHH
Confidence 479999999999999998776543 44567999999999999865 455444
No 30
>KOG1718|consensus
Probab=97.96 E-value=2.2e-05 Score=50.99 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=39.7
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLA 55 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~ 55 (93)
++|||-+|++||+++|..+++... ..++.++-.+++..||-.=.+..
T Consensus 97 TLvHC~AGVSRSAsLClAYLmK~~--------~msLreAy~~vKa~RpiIRPN~G 143 (198)
T KOG1718|consen 97 TLVHCVAGVSRSASLCLAYLMKYH--------CMSLREAYHWVKARRPIIRPNVG 143 (198)
T ss_pred EEEEEccccchhHHHHHHHHHHHc--------cchHHHHHHHHHhhCceeCCCcc
Confidence 589999999999999999988765 78899999999999986555433
No 31
>KOG1716|consensus
Probab=97.91 E-value=5.1e-05 Score=52.71 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=40.3
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSL 54 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~ 54 (93)
++|||.+|++||.+++..+++... .+++.++.+.++..|+....+.
T Consensus 158 vlVHC~~GvSRSat~viAYlM~~~--------~~~l~~A~~~vk~~R~~i~PN~ 203 (285)
T KOG1716|consen 158 VLVHCQAGVSRSATLVIAYLMKYE--------GLSLEDAYELVKSRRPIISPNF 203 (285)
T ss_pred EEEEcCCccchhHHHHHHHHHHHc--------CCCHHHHHHHHHHhCCccCCCH
Confidence 589999999999999999888765 7889999999999998875644
No 32
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.84 E-value=1.3e-05 Score=51.86 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=17.0
Q ss_pred CEEEcCCCCchHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTV 21 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~ 21 (93)
|+|||..|.||||+++|+-++
T Consensus 136 V~vHC~GGlGRtGlvAAcLLl 156 (168)
T PF05706_consen 136 VLVHCRGGLGRTGLVAACLLL 156 (168)
T ss_dssp EEEE-SSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 589999999999998876554
No 33
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.61 E-value=0.0001 Score=47.55 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=28.8
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRR 45 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~ 45 (93)
|+|||..|..|||+++|+..-++ .+++..++.+.|.
T Consensus 94 vLiHC~~G~~rTG~vvg~lRk~Q---------~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 94 VLIHCNHGKDRTGLVVGCLRKLQ---------GWSLSSIFDEYRR 129 (164)
T ss_dssp EEEE-SSSSSHHHHHHHHHHHHT---------TB-HHHHHHHHHH
T ss_pred EEEEeCCCCcchhhHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 58999999999999999887442 7888999999875
No 34
>KOG1717|consensus
Probab=97.25 E-value=0.00053 Score=47.67 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=34.1
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCccc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQS 53 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t 53 (93)
++|||.+|++||-|+++.+++-.. .+++.++...+.+.+.++-.+
T Consensus 254 vLVHClaGISRSvTvtvaYLMqkl--------~lslndAyd~Vk~kksnisPN 298 (343)
T KOG1717|consen 254 VLVHCLAGISRSVTVTVAYLMQKL--------NLSLNDAYDFVKHKKSNISPN 298 (343)
T ss_pred EEEeeeccccchhHHHHHHHHHHh--------ccchhhHHHHHHHhccCCCCC
Confidence 589999999999999988876543 566667777777777665444
No 35
>KOG2283|consensus
Probab=97.10 E-value=0.00023 Score=52.30 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=39.3
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC---C--CCcccHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQR---V--LMVQSLAQYVYIYECVQ 65 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R---~--~~v~t~~qy~f~~~~vl 65 (93)
++|||.+|.||||++++..++...+... ..+++...-..| . +.+..+.|-.|++..-.
T Consensus 110 vvvHCk~Gkgrtg~~icA~L~~~~~~~t-------a~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~ 172 (434)
T KOG2283|consen 110 VVVHCKAGKGRTGVMICAYLIYSGISAT-------AEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSR 172 (434)
T ss_pred EEEEccCCCcceEEEEeHHHHhhhhcCC-------HHHHHHHHhhhhccccccCCccCchhhHHHHHHHH
Confidence 4899999999999999988887766432 234444443344 2 35667777777765543
No 36
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.02 E-value=0.0016 Score=40.54 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=28.7
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVL 49 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~ 49 (93)
+++||++|. |||++.++..... .++..+++...|..-..
T Consensus 89 vL~HC~sG~-Rt~~l~al~~~~~---------g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 89 VLAYCRSGT-RSSLLWGFRQAAE---------GVPVEEIVRRAQAAGYD 127 (135)
T ss_pred EEEEcCCCh-HHHHHHHHHHHHc---------CCCHHHHHHHHHHcCCC
Confidence 589999999 9998877654431 46777888887765543
No 37
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.02 E-value=0.00061 Score=43.48 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=17.7
Q ss_pred CEEEcCCCCchHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVL 22 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~ 22 (93)
+++||++|.-|||+++++-+.+
T Consensus 127 ~l~HC~aGKDRTG~~~alll~~ 148 (164)
T PF13350_consen 127 VLFHCTAGKDRTGVVAALLLSL 148 (164)
T ss_dssp EEEE-SSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCccHHHHHHHHHHH
Confidence 5899999999999988876554
No 38
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.00 E-value=0.0017 Score=41.67 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=35.7
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQY 57 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy 57 (93)
++|||..|+|||.....+..+. + .. ..|-.++.+++|--+|..-.++.-.
T Consensus 96 llIHC~aGISRStA~A~i~a~a--l--a~---~~de~ela~~Lra~sp~atPN~Rli 145 (172)
T COG5350 96 LLIHCYAGISRSTAAALIAALA--L--AP---DMDETELAERLRALSPYATPNPRLI 145 (172)
T ss_pred eeeeeccccccchHHHHHHHHh--h--cc---ccChHHHHHHHHhcCcccCCChhHH
Confidence 5899999999997544332221 1 12 5677889999999999887776544
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=95.50 E-value=0.012 Score=40.24 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=20.7
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQR 24 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~ 24 (93)
+++||..|.-|||+++|+...+..
T Consensus 139 vL~HC~~GkdRTGl~~al~r~~~~ 162 (249)
T COG2365 139 VLIHCTAGKDRTGLVAALYRKLVG 162 (249)
T ss_pred EEEecCCCCcchHHHHHHHHHHhC
Confidence 589999999999999998876543
No 40
>PLN02727 NAD kinase
Probab=95.12 E-value=0.019 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.1
Q ss_pred CEEEcCCCCchHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVL 22 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~ 22 (93)
|++||..|.+|+|++.+++...
T Consensus 344 VLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 344 IYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred EEEECCCCCchHHHHHHHHHHH
Confidence 5899999999999999999873
No 41
>KOG4471|consensus
Probab=93.86 E-value=0.052 Score=41.60 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=39.8
Q ss_pred CEEEcCCCCchHHHHHHHHHHHH-HHHc-----------CC-----------CCCc------------ccHHHHHHHHhh
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQ-RLHN-----------SE-----------RAGS------------VDILRIVHGLRR 45 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~-~~~~-----------~~-----------~~~~------------~~v~~~~~~lR~ 45 (93)
|+||||+|=-||..+.++.+++- -..+ +. +++. +...+-+-.|-+
T Consensus 377 VlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVFLQwlDcV~Ql~r 456 (717)
T KOG4471|consen 377 VLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVFLQWLDCVWQLMR 456 (717)
T ss_pred EEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchhHHHHHHHHHHHH
Confidence 68999999999999988877532 1111 10 0111 235677788888
Q ss_pred cCCCCcccHHHHHH
Q psy15337 46 QRVLMVQSLAQYVY 59 (93)
Q Consensus 46 ~R~~~v~t~~qy~f 59 (93)
|-|.++.-.++|..
T Consensus 457 qfP~aFEFne~fLi 470 (717)
T KOG4471|consen 457 QFPCAFEFNEAFLI 470 (717)
T ss_pred hCCcccccCHHHHH
Confidence 88999888877643
No 42
>KOG2386|consensus
Probab=93.58 E-value=0.031 Score=40.76 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=40.9
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIYEC 63 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t~~qy~f~~~~ 63 (93)
|.|||..|..|||-+++ +.+++ .+ ..+..++++.+-+.|+-.+....-+.=+|..
T Consensus 127 I~vhcthG~NrtgyLI~-~yL~~----~~---~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~ 181 (393)
T KOG2386|consen 127 IGVHCTHGLNRTGYLIC-AYLAD----VG---GYSSSEAIKRFADARPPGIEKQDYIDALYSR 181 (393)
T ss_pred EEEeCCCcccccceeee-eeeee----cc---CccHHHHHHHHHHhCCCccCchHHHHHHhhc
Confidence 57999999999995544 33332 23 6888999999999999888777665555444
No 43
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=91.52 E-value=0.21 Score=35.98 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=18.8
Q ss_pred CEEEcCCCCchHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVL 22 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~ 22 (93)
|+|||++|-.||..++++..++
T Consensus 234 Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 234 VLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp EEEECTTSSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcccHHHHHHHHHH
Confidence 5899999999999988876654
No 44
>KOG1572|consensus
Probab=91.08 E-value=0.15 Score=34.95 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=25.4
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLR 44 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR 44 (93)
+++||..|--|||+++++-.-++ .+.+..++..-+
T Consensus 151 ~Lihc~rGkhRtg~lVgclRklq---------~W~lssil~Ey~ 185 (249)
T KOG1572|consen 151 ILIHCKRGKHRTGCLVGCLRKLQ---------NWSLSSILDEYL 185 (249)
T ss_pred eEEecCCCCcchhhhHHHHHHHh---------ccchhHHHHHHH
Confidence 58999999999999998665332 455566665543
No 45
>KOG1089|consensus
Probab=88.03 E-value=0.48 Score=36.27 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.0
Q ss_pred CEEEcCCCCchHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTV 21 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~ 21 (93)
|||||++|--||..++.+..+
T Consensus 347 VlvhcsdGwDrT~qV~SLaQl 367 (573)
T KOG1089|consen 347 VLVHCSDGWDRTCQVSSLAQL 367 (573)
T ss_pred EEEEccCCcchhHHHHHHHHH
Confidence 689999999999998876653
No 46
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=60.70 E-value=7.8 Score=22.10 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.6
Q ss_pred CEEEcCCCCchHHHH
Q psy15337 1 MVVHCSAGVGRTGTF 15 (93)
Q Consensus 1 ivVHC~~G~gRsg~f 15 (93)
|+|+|..| .||...
T Consensus 64 ivvyC~~G-~rs~~a 77 (101)
T cd01518 64 VLMYCTGG-IRCEKA 77 (101)
T ss_pred EEEECCCc-hhHHHH
Confidence 58999887 777644
No 47
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=54.57 E-value=7 Score=27.23 Aligned_cols=15 Identities=40% Similarity=0.899 Sum_probs=10.6
Q ss_pred CEEEcCCCCchHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFI 16 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~ 16 (93)
||+||| |.+-+|.|.
T Consensus 94 iv~HcS-ga~~~~il~ 108 (289)
T COG5495 94 IVAHCS-GANGSGILA 108 (289)
T ss_pred EEEEcc-CCCchhhhh
Confidence 689999 556566654
No 48
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=53.14 E-value=13 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=9.6
Q ss_pred CEEEcCCCCchHHH
Q psy15337 1 MVVHCSAGVGRTGT 14 (93)
Q Consensus 1 ivVHC~~G~gRsg~ 14 (93)
++|+|..| +||..
T Consensus 64 ivv~C~~G-~rs~~ 76 (100)
T cd01523 64 VTVICAKE-GSSQF 76 (100)
T ss_pred EEEEcCCC-CcHHH
Confidence 58999988 46653
No 49
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=52.25 E-value=12 Score=21.35 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=9.2
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
++|+|+.| .||+
T Consensus 64 ivv~C~~G-~rS~ 75 (110)
T COG0607 64 IVVYCASG-VRSA 75 (110)
T ss_pred EEEEeCCC-CChH
Confidence 58999988 5664
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=50.46 E-value=15 Score=22.66 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.1
Q ss_pred CEEEcCCCCchHHH
Q psy15337 1 MVVHCSAGVGRTGT 14 (93)
Q Consensus 1 ivVHC~~G~gRsg~ 14 (93)
|+++|..| .||..
T Consensus 84 IivyC~sG-~RS~~ 96 (136)
T PLN02160 84 ILVGCQSG-ARSLK 96 (136)
T ss_pred EEEECCCc-HHHHH
Confidence 58999987 67763
No 51
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.48 E-value=38 Score=19.60 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=38.1
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcc---cHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHHHc
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSV---DILRIVHGLRRQRVLMVQSLAQYVYIYECVQVYLQG 70 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~---~v~~~~~~lR~~R~~~v~t~~qy~f~~~~vl~~~~~ 70 (93)
|++-|.+|.+ |..+ + .-+-+.+++.+.+..+ ++.++-... ...-.+-...|..|...-+.+....
T Consensus 6 ILl~C~~G~s-SS~l-~-~k~~~~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 6 ILLLCAAGMS-TSLL-V-NKMNKAAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred EEEECCCchh-HHHH-H-HHHHHHHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHHHHHHHHHHHhhh
Confidence 5789999998 5543 3 5555566665543332 233322222 2345666777888877777766544
No 52
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=41.97 E-value=26 Score=20.20 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.0
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
|+|+|..|. |+.
T Consensus 69 ivv~C~~G~-rs~ 80 (109)
T cd01533 69 IVVNCAGRT-RSI 80 (109)
T ss_pred EEEECCCCc-hHH
Confidence 589999875 663
No 53
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=41.83 E-value=44 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.1
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCchhhhh
Q psy15337 50 MVQSLAQYVYIYECVQVYLQGGVRHERQI 78 (93)
Q Consensus 50 ~v~t~~qy~f~~~~vl~~~~~~~~~~~~~ 78 (93)
+-.|..||.-+|.++...+.-.-+..++.
T Consensus 48 i~~tS~QY~~ly~Iv~~LLly~ep~~k~~ 76 (457)
T PF10351_consen 48 ITSTSSQYAALYDIVTNLLLYVEPEKKER 76 (457)
T ss_pred EEECHHHHHHHHHHHHHHhhcCCchhhHH
Confidence 44589999999999999998888776665
No 54
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=40.64 E-value=28 Score=19.54 Aligned_cols=12 Identities=42% Similarity=0.991 Sum_probs=9.9
Q ss_pred CEEEcCCCCchH
Q psy15337 1 MVVHCSAGVGRT 12 (93)
Q Consensus 1 ivVHC~~G~gRs 12 (93)
+++.|.+|.|-|
T Consensus 3 ilvvCg~G~gtS 14 (87)
T cd05567 3 IVFACDAGMGSS 14 (87)
T ss_pred EEEECCCCccHH
Confidence 578999999954
No 55
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=38.53 E-value=47 Score=18.32 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=10.4
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
|++-|.+|.|-|-
T Consensus 2 IlvvC~~Gi~TS~ 14 (90)
T PF02302_consen 2 ILVVCGSGIGTSL 14 (90)
T ss_dssp EEEEESSSSHHHH
T ss_pred EEEECCChHHHHH
Confidence 5789999998553
No 56
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=37.56 E-value=38 Score=22.04 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.1
Q ss_pred CEEEcCCCCchHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIA 17 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~ 17 (93)
++||+-+|.|.|-.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~ 17 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKK 17 (234)
T ss_pred CEEEcCCCCCHHHHHHH
Confidence 68999999999975543
No 57
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=35.29 E-value=59 Score=15.71 Aligned_cols=26 Identities=8% Similarity=-0.110 Sum_probs=22.4
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHcC
Q psy15337 46 QRVLMVQSLAQYVYIYECVQVYLQGG 71 (93)
Q Consensus 46 ~R~~~v~t~~qy~f~~~~vl~~~~~~ 71 (93)
.+|+...+.+|+..-+..+-+|+...
T Consensus 6 ~~Pg~~a~~eel~~Y~~~L~~Yinli 31 (36)
T cd00126 6 ENPGDDASPEELRQYLAALREYINLI 31 (36)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999998643
No 58
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=33.77 E-value=63 Score=15.61 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=22.8
Q ss_pred hcCCCCcccHHHHHHHHHHHHHHHHcC
Q psy15337 45 RQRVLMVQSLAQYVYIYECVQVYLQGG 71 (93)
Q Consensus 45 ~~R~~~v~t~~qy~f~~~~vl~~~~~~ 71 (93)
-.+|+...+.+|+..-+..+-+|+...
T Consensus 5 P~~Pg~~a~~e~l~~Y~~~L~~Yinli 31 (36)
T smart00309 5 PERPGDDASPEDLRQYLAALREYINLI 31 (36)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999998643
No 59
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=33.47 E-value=30 Score=20.14 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=10.0
Q ss_pred CEEEcCCCCchHHH
Q psy15337 1 MVVHCSAGVGRTGT 14 (93)
Q Consensus 1 ivVHC~~G~gRsg~ 14 (93)
||++|..|..|+..
T Consensus 69 iv~~C~~~g~rs~~ 82 (113)
T cd01443 69 AIFYCGSSQGRGPR 82 (113)
T ss_pred EEEECCCCCcccHH
Confidence 58999976566643
No 60
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=32.21 E-value=39 Score=21.45 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=11.2
Q ss_pred CEEEcCCCCchHHH
Q psy15337 1 MVVHCSAGVGRTGT 14 (93)
Q Consensus 1 ivVHC~~G~gRsg~ 14 (93)
||+.|..|..|+..
T Consensus 119 IVvYC~~G~~~S~~ 132 (162)
T TIGR03865 119 LVFYCLADCWMSWN 132 (162)
T ss_pred EEEEECCCCHHHHH
Confidence 58999988777764
No 61
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=31.48 E-value=42 Score=20.03 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=9.1
Q ss_pred CEEEcCCCCchHHH
Q psy15337 1 MVVHCSAGVGRTGT 14 (93)
Q Consensus 1 ivVHC~~G~gRsg~ 14 (93)
|+|||..+..||..
T Consensus 71 vv~yC~~sg~rs~~ 84 (121)
T cd01530 71 LIFHCEFSSKRGPR 84 (121)
T ss_pred EEEECCCccccHHH
Confidence 58999733366654
No 62
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=30.26 E-value=54 Score=18.02 Aligned_cols=34 Identities=21% Similarity=0.561 Sum_probs=14.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Q psy15337 2 VVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQ 46 (93)
Q Consensus 2 vVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~ 46 (93)
|++|.+.+ -.++-+...+..++ |+...++.+|+.
T Consensus 38 v~~~~P~l------~~l~~l~~~LN~t~-----dl~~Fl~~vR~~ 71 (74)
T PF08234_consen 38 VISCDPPL------EDLDELVDELNKTN-----DLSKFLKRVRKA 71 (74)
T ss_dssp ----------------THHHHHHHHH--------HHHHHHHHHHH
T ss_pred EEEecCCc------chHHHHHHHHhccC-----CHHHHHHHHHHH
Confidence 44555554 34555666666544 777888888763
No 63
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=29.44 E-value=68 Score=19.97 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.0
Q ss_pred CEEEcCCCCchHHHHHHHHHHHH
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQ 23 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~ 23 (93)
+++....|.|.|-++-++..++-
T Consensus 22 ~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 22 NVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 36788899999999888888774
No 64
>PF12466 GDH_N: Glutamate dehydrogenase N terminal; InterPro: IPR024727 Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia []. This entry represents a domain found in the N-terminal region of a bacterial family of putative GDHs.
Probab=29.02 E-value=41 Score=17.96 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCcccHHHHHHHHhhcCCCCcccHHH
Q psy15337 31 AGSVDILRIVHGLRRQRVLMVQSLAQ 56 (93)
Q Consensus 31 ~~~~~v~~~~~~lR~~R~~~v~t~~q 56 (93)
|+.+++.-++..+|++-|.+-|+..|
T Consensus 30 ~~~v~LepVfaALRkryPaa~Q~eaq 55 (60)
T PF12466_consen 30 PQMVSLEPVFAALRKRYPAARQSEAQ 55 (60)
T ss_pred ccccchhHHHHHHHHhCcHHHHHHHH
Confidence 44788888999999999888776655
No 65
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=28.75 E-value=88 Score=19.87 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=15.6
Q ss_pred EEEcCCCCchHHHHHHHHHHH
Q psy15337 2 VVHCSAGVGRTGTFIALDTVL 22 (93)
Q Consensus 2 vVHC~~G~gRsg~f~~~~~~~ 22 (93)
+|++.+|.|.|.+.+.+-..+
T Consensus 21 ~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 21 LIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEE-STTSSHHHHHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHHHHh
Confidence 689999999998777655544
No 66
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=28.51 E-value=1e+02 Score=16.55 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.3
Q ss_pred EEEcCCCCchHHHHHHHHHHH
Q psy15337 2 VVHCSAGVGRTGTFIALDTVL 22 (93)
Q Consensus 2 vVHC~~G~gRsg~f~~~~~~~ 22 (93)
+++-..|.|.|-.+-|+..++
T Consensus 27 li~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 27 LITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 678889999999888877765
No 67
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=28.40 E-value=55 Score=19.09 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=9.1
Q ss_pred CEEEcCCCCchHHHH
Q psy15337 1 MVVHCSAGVGRTGTF 15 (93)
Q Consensus 1 ivVHC~~G~gRsg~f 15 (93)
|+|+|..| |+....
T Consensus 82 vv~~c~~g-~~~a~~ 95 (122)
T cd01448 82 VVVYDDGG-GFFAAR 95 (122)
T ss_pred EEEECCCC-CccHHH
Confidence 58999987 444433
No 68
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=28.31 E-value=43 Score=18.89 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=9.6
Q ss_pred CEEEcCCCCchHHHH
Q psy15337 1 MVVHCSAGVGRTGTF 15 (93)
Q Consensus 1 ivVHC~~G~gRsg~f 15 (93)
++++|..|. |++.+
T Consensus 68 vv~~c~~g~-~s~~~ 81 (105)
T cd01525 68 IVIVSHSHK-HAALF 81 (105)
T ss_pred EEEEeCCCc-cHHHH
Confidence 578998875 66544
No 69
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=28.28 E-value=44 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=9.6
Q ss_pred CEEEcCCCCchHHHH
Q psy15337 1 MVVHCSAGVGRTGTF 15 (93)
Q Consensus 1 ivVHC~~G~gRsg~f 15 (93)
++++|..| .|+...
T Consensus 63 IVlyC~~G-~rS~~a 76 (104)
T PRK10287 63 VKLYCNAG-RQSGQA 76 (104)
T ss_pred EEEEeCCC-hHHHHH
Confidence 58999887 555543
No 70
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.95 E-value=54 Score=18.28 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=8.9
Q ss_pred CEEEcCCCCchHHH
Q psy15337 1 MVVHCSAGVGRTGT 14 (93)
Q Consensus 1 ivVHC~~G~gRsg~ 14 (93)
|+|+|..| +|+..
T Consensus 59 ivv~c~~g-~~s~~ 71 (96)
T cd01529 59 YVLTCDGS-LLARF 71 (96)
T ss_pred EEEEeCCh-HHHHH
Confidence 58999865 56643
No 71
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=25.88 E-value=54 Score=19.34 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.1
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
++++|..| .|+.
T Consensus 75 ivv~C~~G-~rs~ 86 (122)
T cd01526 75 IYVVCRRG-NDSQ 86 (122)
T ss_pred EEEECCCC-CcHH
Confidence 57899988 4665
No 72
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.69 E-value=1.3e+02 Score=19.29 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=27.5
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQR 47 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~lR~~R 47 (93)
++++...|.|.|-..+++-. ..+.++..-.-++..+.+..++..+
T Consensus 50 l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~~~~L~~~l~~~~ 94 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFITASDLLDELKQSR 94 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEHHHHHHHHHCCH
T ss_pred EEEEhhHhHHHHHHHHHHHH--HhccCCcceeEeecCceeccccccc
Confidence 36788899999976665543 3333333111367778888887654
No 73
>PHA03338 US22 family homolog; Provisional
Probab=25.23 E-value=50 Score=23.71 Aligned_cols=16 Identities=38% Similarity=0.980 Sum_probs=13.4
Q ss_pred EEEcCCCCchHHHHHH
Q psy15337 2 VVHCSAGVGRTGTFIA 17 (93)
Q Consensus 2 vVHC~~G~gRsg~f~~ 17 (93)
.+||+.|++-+|.+..
T Consensus 160 pihC~agl~esgill~ 175 (344)
T PHA03338 160 PIHCRAGLGEIGILLG 175 (344)
T ss_pred EeccccccchhHHHHH
Confidence 4799999999997653
No 74
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=23.60 E-value=72 Score=17.91 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=8.5
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
|||+|..|. |+.
T Consensus 69 ivv~c~~g~-~s~ 80 (106)
T cd01519 69 LIFYCKAGV-RSK 80 (106)
T ss_pred EEEECCCcH-HHH
Confidence 589999874 553
No 75
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=23.50 E-value=63 Score=17.99 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=8.4
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
+||+|..| .|+.
T Consensus 64 ivv~c~~g-~~s~ 75 (103)
T cd01447 64 FVFYCASG-WRSA 75 (103)
T ss_pred EEEEcCCC-CcHH
Confidence 58999876 4543
No 76
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=22.35 E-value=78 Score=18.40 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=9.8
Q ss_pred CEEEcCCCCchHHHH
Q psy15337 1 MVVHCSAGVGRTGTF 15 (93)
Q Consensus 1 ivVHC~~G~gRsg~f 15 (93)
+++.|..| .||...
T Consensus 61 vvlyC~~G-~rS~~a 74 (101)
T TIGR02981 61 VKLYCNAG-RQSGMA 74 (101)
T ss_pred EEEEeCCC-HHHHHH
Confidence 47899987 466544
No 77
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.98 E-value=74 Score=16.67 Aligned_cols=13 Identities=31% Similarity=0.940 Sum_probs=9.7
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
+++-|..|.|-+.
T Consensus 2 il~vc~~G~~~s~ 14 (84)
T cd00133 2 ILVVCGSGIGSSS 14 (84)
T ss_pred EEEECCCcHhHHH
Confidence 4688999887554
No 78
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=21.88 E-value=3.5e+02 Score=20.84 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.1
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcCCCCccc
Q psy15337 21 VLQRLHNSERAGSVDILRIVHGLRRQRVLMVQS 53 (93)
Q Consensus 21 ~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~v~t 53 (93)
.+.++..++.+.+..++.++..+|.-|.-+|.+
T Consensus 152 F~~~L~e~qVdstw~~~r~i~el~D~r~~~V~~ 184 (590)
T COG5104 152 FITMLKENQVDSTWPIFRAIEELRDPRYWMVDT 184 (590)
T ss_pred HHHHHhhccCCCcccHHHHHHHhcCccceeecC
Confidence 355677777777899999999999999999887
No 79
>smart00400 ZnF_CHCC zinc finger.
Probab=21.85 E-value=1.3e+02 Score=15.27 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=16.2
Q ss_pred EEcCCCCchHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q psy15337 3 VHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGL 43 (93)
Q Consensus 3 VHC~~G~gRsg~f~~~~~~~~~~~~~~~~~~~~v~~~~~~l 43 (93)
.||. |.|..|-.+....-+. .+++.++++.|
T Consensus 24 ~~Cf-~cg~gGd~i~fv~~~~---------~~sf~eA~~~L 54 (55)
T smart00400 24 FHCF-GCGAGGNVISFLMKYD---------KLSFVEAVKKL 54 (55)
T ss_pred EEEe-CCCCCCCHHHHHHHHH---------CcCHHHHHHHh
Confidence 4676 4566664433322221 45677777654
No 80
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=20.75 E-value=53 Score=24.49 Aligned_cols=14 Identities=43% Similarity=0.888 Sum_probs=11.7
Q ss_pred CCCchHHHHHHHHH
Q psy15337 7 AGVGRTGTFIALDT 20 (93)
Q Consensus 7 ~G~gRsg~f~~~~~ 20 (93)
.|.||||-|.+.+.
T Consensus 228 tG~GRTGk~fA~e~ 241 (404)
T COG4992 228 TGLGRTGKLFAYEH 241 (404)
T ss_pred cCCCccchHHHHHH
Confidence 58999999988765
No 81
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=20.71 E-value=1e+02 Score=17.12 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=8.5
Q ss_pred CEEEcCCCCchHH
Q psy15337 1 MVVHCSAGVGRTG 13 (93)
Q Consensus 1 ivVHC~~G~gRsg 13 (93)
|+++|..|. |+.
T Consensus 59 iv~~c~~G~-rs~ 70 (95)
T cd01534 59 IVLADDDGV-RAD 70 (95)
T ss_pred EEEECCCCC-hHH
Confidence 589998874 554
No 82
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=20.65 E-value=1.2e+02 Score=14.55 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.9
Q ss_pred hcCCCCcccHHHHHHHHHHHHHHHHc
Q psy15337 45 RQRVLMVQSLAQYVYIYECVQVYLQG 70 (93)
Q Consensus 45 ~~R~~~v~t~~qy~f~~~~vl~~~~~ 70 (93)
-.+|+...+.+|..--+..+-+|+..
T Consensus 5 P~~P~~~aspeel~~Y~~~L~~Y~~l 30 (36)
T PF00159_consen 5 PERPGDFASPEELAQYYAALRHYINL 30 (36)
T ss_dssp SSSSSTTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999888764
No 83
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.25 E-value=1.6e+02 Score=18.71 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=18.2
Q ss_pred CEEEcCCCCchHHHHHHHHHHHHHHHcCC
Q psy15337 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSE 29 (93)
Q Consensus 1 ivVHC~~G~gRsg~f~~~~~~~~~~~~~~ 29 (93)
|+.|+. -.+..+.-++..++..+++.+
T Consensus 155 il~Hd~--~~~~~t~~~l~~~i~~l~~~G 181 (191)
T TIGR02764 155 ILLHAS--DSAKQTVKALPTIIKKLKEKG 181 (191)
T ss_pred EEEeCC--CCcHhHHHHHHHHHHHHHHCC
Confidence 467873 356666777777887776655
Done!