RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15337
(93 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 99.2 bits (248), Expect = 2e-27
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCSAGVGRTGTFIA+D +LQRL G VDI + V LR QR MVQ+ QY+++
Sbjct: 169 IVVHCSAGVGRTGTFIAIDILLQRLEAE---GVVDIFQTVKELRSQRPGMVQTEEQYIFL 225
Query: 61 YECVQ 65
Y +
Sbjct: 226 YRAIL 230
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 95.8 bits (239), Expect = 7e-26
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCSAGVGRTGTFIA+D +LQ+L VDI IV LR QR MVQ+ QY+++
Sbjct: 197 IVVHCSAGVGRTGTFIAIDILLQQLEAG---KEVDIFEIVKELRSQRPGMVQTEEQYIFL 253
Query: 61 YECV 64
Y +
Sbjct: 254 YRAI 257
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 92.0 bits (229), Expect = 1e-24
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCSAGVGRTGTFIA+D +LQ+L G VD+ +IV LR QR MVQ+ QY+++
Sbjct: 171 IVVHCSAGVGRTGTFIAIDILLQQLEAE---GEVDVFQIVKELRSQRPGMVQTEEQYIFL 227
Query: 61 YECVQ 65
Y+ V
Sbjct: 228 YDAVL 232
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 88.2 bits (219), Expect = 2e-24
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCSAGVGRTGTF+A+D +LQ+L AG VDI V LR QR MVQ+ QY+++
Sbjct: 42 VVVHCSAGVGRTGTFVAIDILLQQLEA--EAGEVDIFDTVKELRSQRPGMVQTEEQYLFL 99
Query: 61 YECV 64
Y +
Sbjct: 100 YRAL 103
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 88.2 bits (219), Expect = 2e-24
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCSAGVGRTGTF+A+D +LQ+L AG VDI V LR QR MVQ+ QY+++
Sbjct: 42 VVVHCSAGVGRTGTFVAIDILLQQLEA--EAGEVDIFDTVKELRSQRPGMVQTEEQYLFL 99
Query: 61 YECV 64
Y +
Sbjct: 100 YRAL 103
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 83.4 bits (206), Expect = 8e-21
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRL-----HNSERAGSVD-ILRIVHGLRRQRVLMVQSL 54
++VHCSAGVGRTGTFIALD +L+ H + D I +IV LR QR+ MVQ+
Sbjct: 221 IIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNK 280
Query: 55 AQYVYIYECVQVYLQ 69
Q+ ++Y+ +
Sbjct: 281 TQFKFLYDAFLELNK 295
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 55.7 bits (134), Expect = 9e-11
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHC+AG+GRT + +D + R +V I IV +R QR + QY +
Sbjct: 230 IVVHCNAGLGRTPCYCVVDISISRFDACA---TVSIPSIVSSIRNQRYYSLFIPFQYFFC 286
Query: 61 YECVQVYLQ 69
Y V+ Y+
Sbjct: 287 YRAVKRYVN 295
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 52.3 bits (125), Expect = 2e-09
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCSAG+GR GTF A+D L++L E+ V + IV +R+QR V QY +
Sbjct: 250 IVVHCSAGIGRAGTFCAIDNALEQL---EKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFC 306
Query: 61 YECVQ 65
Y+ ++
Sbjct: 307 YKALK 311
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 49.6 bits (118), Expect = 1e-08
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
++VHCSAG+ R G F A+D + + +ERA + +L IV LR+QR + QY++
Sbjct: 232 ILVHCSAGLDRAGAFCAIDICISKY--NERA-IIPLLSIVRDLRKQRHNCLSLPQQYIFC 288
Query: 61 YECVQVY 67
Y V ++
Sbjct: 289 YFIVLIF 295
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 49.2 bits (117), Expect = 2e-08
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+VVHCS GVG+TG F A+D L +L + ++ + + +R QR + + Y++I
Sbjct: 232 IVVHCSDGVGKTGIFCAVDICLNQL---VKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288
Query: 61 YECVQVYL 68
+V
Sbjct: 289 QPGYEVLH 296
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 38.2 bits (89), Expect = 1e-04
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 2 VVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYIY 61
VVHC G+GR+GT IA +L S + + + RR+R V + Q+++
Sbjct: 109 VVHCQGGIGRSGTVIAAYLML-YGGLSLAD---EAIAVK---RRRRPGAVVTEIQHLFEL 161
Query: 62 ECVQ 65
E
Sbjct: 162 EQEL 165
>gnl|CDD|165107 PHA02740, PHA02740, protein tyrosine phosphatase; Provisional.
Length = 298
Score = 31.1 bits (70), Expect = 0.057
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 1 MVVHCSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRIVHGLRRQRVLMVQSLAQYVYI 60
+++ C G+ + F D ++ G + I + +R+++ + L YV+
Sbjct: 224 IIIDCIDGISSSAVFCVFDICATEF---DKTGMLSIANALKKVRQKKYGCMNCLDDYVFC 280
Query: 61 YECVQVYLQ 69
Y + YL+
Sbjct: 281 YHLIAAYLK 289
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 29.9 bits (68), Expect = 0.092
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 3 VHCSAGVGRTGTFIA 17
VHC AGV R+ T I
Sbjct: 83 VHCQAGVSRSATLII 97
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 29.0 bits (66), Expect = 0.19
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 2 VVHCSAGVGRTGTFIAL 18
+ HC+AG RTG AL
Sbjct: 127 LFHCTAGKDRTGVAAAL 143
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 28.8 bits (65), Expect = 0.24
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 3 VHCSAGVGRTGTFIA 17
VHC AG+ R+ T I
Sbjct: 76 VHCQAGISRSATLII 90
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 27.4 bits (61), Expect = 0.92
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 2 VVHCSAGVGRTGTFIAL---------DTVLQ--RLHNSERAGSVDILRI 39
++HC+AG RTG AL +TV L N +
Sbjct: 140 LIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILE 188
>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR)
and related proteins, classical (c) SDR. These proteins
include members identified as KDSR, ribitol type
dehydrogenase, and others. The group shows strong
conservation of the active site tetrad and glycine rich
NAD-binding motif of the classical SDRs. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 239
Score = 26.8 bits (60), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 1 MVVHCSAGVGRTGTFIALD-TVLQRLHNSERAGSVD----ILRIVHGLRRQRVLMVQSLA 55
+VV+C AG+ G F L +R + GS++ +L ++ R ++ V S A
Sbjct: 85 LVVNC-AGISIPGLFEDLTAEEFERGMDVNYFGSLNVAHAVLPLMKEQRPGHIVFVSSQA 143
Query: 56 QYVYIY 61
V IY
Sbjct: 144 ALVGIY 149
>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
Provisional.
Length = 535
Score = 26.7 bits (58), Expect = 1.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 2 VVHCSAGVGRTGTFIA 17
++HC GVGRTGT A
Sbjct: 470 MIHCLGGVGRTGTMAA 485
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 25.8 bits (57), Expect = 2.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 3 VHCSAGVGRTGTFIAL 18
VHC AG+GR +AL
Sbjct: 103 VHCVAGLGRAPILVAL 118
>gnl|CDD|214410 MTH00043, ND4L, NADH dehydrogenase subunit 4L; Validated.
Length = 98
Score = 25.3 bits (56), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 5 CSAGVGRTGTFIALDTVLQRLHNSERAGSVDILRI 39
C A +G ++L +L R HNS+ S+++L+
Sbjct: 69 CEASIG-----LSLMVLLSRNHNSDLVASLNLLQN 98
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 24.9 bits (55), Expect = 6.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 3 VHCSAGVGRTGTFIA 17
VHC AGV R+ T +
Sbjct: 86 VHCLAGVSRSATLVI 100
>gnl|CDD|172813 PRK14337, PRK14337, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 446
Score = 25.1 bits (55), Expect = 6.6
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 13/46 (28%)
Query: 15 FIALDTVLQRLHNSERAGSVDILR-------------IVHGLRRQR 47
F L + RLH ++GS IL+ IV LR R
Sbjct: 252 FGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAAR 297
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 25.1 bits (56), Expect = 6.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 7 AGVGRTGTF 15
AG GRTGTF
Sbjct: 242 AGCGRTGTF 250
>gnl|CDD|218544 pfam05296, TAS2R, Mammalian taste receptor protein (TAS2R). This
family consists of several forms of mammalian taste
receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled
receptors expressed in subsets of taste receptor cells
of the tongue and palate epithelia and are organised in
the genome in clusters. The proteins are genetically
linked to loci that influence bitter perception in mice
and humans.
Length = 303
Score = 24.9 bits (55), Expect = 7.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 72 VRHERQIQNNEAIERD 87
RH RQ+Q N RD
Sbjct: 208 WRHTRQMQLNSTGFRD 223
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 24.4 bits (53), Expect = 9.2
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 1 MVVHCSAGVGRT 12
+++HC AG+ R+
Sbjct: 96 LLIHCYAGISRS 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.400
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,768,158
Number of extensions: 393537
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 30
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)