Query psy15339
Match_columns 795
No_of_seqs 173 out of 675
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 18:24:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09004 DUF1891: Domain of un 86.1 0.24 5.2E-06 39.9 0.1 41 50-90 1-41 (42)
2 cd01709 RT_like_1 RT_like_1: A 8.3 2.2E+02 0.0048 31.9 1.9 112 1-124 147-264 (346)
3 KOG4101|consensus 7.1 3.9E+02 0.0084 27.4 2.7 70 52-130 72-147 (175)
4 TIGR03884 sel_bind_Methan sele 6.8 4E+02 0.0087 24.4 2.4 26 38-63 15-40 (74)
5 cd01267 CED6_AIDA1b Phosphotyr 5.5 5.6E+02 0.012 23.9 2.8 27 36-62 5-31 (132)
6 cd01214 CG8312 CG8312 Phosphot 4.9 5.6E+02 0.012 25.4 2.4 29 35-63 4-36 (133)
7 PF00640 PID: Phosphotyrosine 4.7 5.5E+02 0.012 22.9 2.1 12 36-47 2-13 (140)
8 PLN03194 putative disease resi 4.4 7.8E+02 0.017 25.6 3.1 77 51-128 71-153 (187)
9 PF07311 Dodecin: Dodecin; In 4.1 5.5E+02 0.012 22.7 1.6 29 45-73 11-39 (66)
10 cd01208 X11 X11 Phosphotyrosin 3.9 6.3E+02 0.014 25.7 2.0 33 36-70 8-41 (156)
No 1
>PF09004 DUF1891: Domain of unknown function (DUF1891); InterPro: IPR015095 This domain is found at the extreme N terminus of eukaryotic alkylated DNA repair protein homologs. ; GO: 0008168 methyltransferase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 2CQ2_A 3THT_C 3THP_A.
Probab=86.11 E-value=0.24 Score=39.89 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=8.1
Q ss_pred chhhhhHHHhhhhhhhhcccccccccCchhhhhhhhheeec
Q psy15339 50 CQVEINKRIGIAKNAFWKHRDLMTRNISKTTKLRLLKTYVF 90 (795)
Q Consensus 50 FSkHVKaRISKAnaAFgkLRRLwRSRLSrKTKrRLYKSyVR 90 (795)
|+.+++..++||..+++.||++.+.+++.++...+|+++|.
T Consensus 1 W~~n~~~~~KKa~qRlyFLRkl~k~~~~~~~l~lfY~s~Ie 41 (42)
T PF09004_consen 1 WTSNTTSLYKKAQQRLYFLRKLRKFNVDSKLLTLFYHSVIE 41 (42)
T ss_dssp -------------------------SS-----SHTTTTT--
T ss_pred CCcchHHHHHHHHhHHHHHHHHHHccchhHHHHHHHHHHhc
Confidence 78899999999999999999998888999999999999875
No 2
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=8.32 E-value=2.2e+02 Score=31.92 Aligned_cols=112 Identities=12% Similarity=0.187 Sum_probs=53.5
Q ss_pred CccCcccceEEEccccCCCCcceEEeCCeEEEeEeeeEeeCceecc-CCCch---hhhhHHHhhhhhhhhcccccccccC
Q psy15339 1 MKINVKKSKYMRMSKKEHRRLTNIDVNGQVFEEVAKYKYLGSEITN-DGRCQ---VEINKRIGIAKNAFWKHRDLMTRNI 76 (795)
Q Consensus 1 LKINpSKTKVMIFSRKrrp~~~SITIGGe~IEqVDSFKYLGVIIDS-DLSFS---kHVKaRISKAnaAFgkLRRLwRSRL 76 (795)
|++|++||+++.+....+.... .+.. .++ ...+++-=..+|. .|.|. ++|.+-|...++-+.+.+.++
T Consensus 147 LelN~eKT~iV~~~~~~r~~~~--~~~~-~LP-~g~i~wgfL~Ld~~~G~~~Idq~~Vd~hi~el~~QL~~c~Sv~---- 218 (346)
T cd01709 147 LELNKEKTGSVYLSDDTKTRDT--TIDA-TLP-EGPVRWGFLKLDPKTGRWEIDQSQVDAHIDELRKQLDACKSVL---- 218 (346)
T ss_pred ceeccccceEEEeccCCccCCC--cccc-cCC-CCCceeeeEEecCCCCcEEeeHHHHHHHHHHHHHHhhcCchHH----
Confidence 6899999999988643210000 0000 000 0111222223332 34443 334444443333333332222
Q ss_pred chhhhhhhhheeecc--eehcccccccCCCChhhhhhhhhhhhHhHHhhC
Q psy15339 77 SKTTKLRLLKTYVFS--ILTYGCEAWTIHPENFPSIKLHFKLPLYQTSLQ 124 (795)
Q Consensus 77 SrKTKrRLYKSyVRP--ILEYGSEVWtLTKKDiKKLERfQQnRCLRTILG 124 (795)
.-++.|++|+-- .=.+|-++-+.-.++++.+-+. ..++.|.+..
T Consensus 219 ---~wiq~WNsy~~~ff~~nFg~pa~cfGr~Hvd~~l~t-~~riq~~lf~ 264 (346)
T cd01709 219 ---SWIQAWNSYIGRFFSNNFGKPANCFGREHVDAILAT-HERIQRRLFP 264 (346)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCcchhcCHHHHHHHHHH-HHHHHHHhcC
Confidence 234566666522 2345666666666677666665 5666777764
No 3
>KOG4101|consensus
Probab=7.06 E-value=3.9e+02 Score=27.44 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=40.5
Q ss_pred hhhhHHHhhhhhhhhcccccccccCchhhhhhhhheeecceehccccccc---CCCChhhhhhhhh--h-hhHhHHhhCC
Q psy15339 52 VEINKRIGIAKNAFWKHRDLMTRNISKTTKLRLLKTYVFSILTYGCEAWT---IHPENFPSIKLHF--K-LPLYQTSLQT 125 (795)
Q Consensus 52 kHVKaRISKAnaAFgkLRRLwRSRLSrKTKrRLYKSyVRPILEYGSEVWt---LTKKDiKKLERfQ--Q-nRCLRTILGV 125 (795)
++.++.+.+.+..+ +..++...| -++.+|+-=+-+-||..|. +.++....||.+. + ++.+. .+|.
T Consensus 72 EEfkati~RvNsvL-------Kk~lpvnvr-WLlCGc~cCCCtlGCSmWPViCLnkRT~lsleKllewENn~LYH-KLgL 142 (175)
T KOG4101|consen 72 EEFKATIGRVNSVL-------KKHLPVNVR-WLLCGCLCCCCTLGCSMWPVICLNKRTRLSLEKLLEWENNRLYH-KLGL 142 (175)
T ss_pred HHHHHHHHHHHHHH-------HhcCCchhH-HHHhhHHHHhhccCccccceeeecHHHHHHHHHHHhhhhhhHHH-HHhh
Confidence 35555555555443 333555444 4555666666678999997 3455555555553 2 44444 4588
Q ss_pred CCCcc
Q psy15339 126 SPLSN 130 (795)
Q Consensus 126 SwlDR 130 (795)
+|.-.
T Consensus 143 HW~L~ 147 (175)
T KOG4101|consen 143 HWRLA 147 (175)
T ss_pred hhhhh
Confidence 88654
No 4
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=6.76 E-value=4e+02 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=19.9
Q ss_pred EeeCceeccCCCchhhhhHHHhhhhh
Q psy15339 38 KYLGSEITNDGRCQVEINKRIGIAKN 63 (795)
Q Consensus 38 KYLGVIIDSDLSFSkHVKaRISKAna 63 (795)
+|||+.....-+.++-+++..++|.+
T Consensus 15 ~yl~iv~~~~~d~d~Al~eM~e~A~~ 40 (74)
T TIGR03884 15 YYLGIVSTESDNVDEIVENLREKVKA 40 (74)
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 79999997655777777777777665
No 5
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=5.55 E-value=5.6e+02 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=19.6
Q ss_pred eeEeeCceeccCCCchhhhhHHHhhhh
Q psy15339 36 KYKYLGSEITNDGRCQVEINKRIGIAK 62 (795)
Q Consensus 36 SFKYLGVIIDSDLSFSkHVKaRISKAn 62 (795)
.+||||+.--.+..-++.+++.+++.+
T Consensus 5 ~vkyLGs~~V~~~~g~~~~~~Ai~~l~ 31 (132)
T cd01267 5 RAKFLGSLEIGKLKGTEVAREAIRKLK 31 (132)
T ss_pred EEEEEEEEEecCCCChHHHHHHHHHHH
Confidence 589999998776666666666666554
No 6
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=4.91 E-value=5.6e+02 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=18.1
Q ss_pred eeeEeeCceecc----CCCchhhhhHHHhhhhh
Q psy15339 35 AKYKYLGSEITN----DGRCQVEINKRIGIAKN 63 (795)
Q Consensus 35 DSFKYLGVIIDS----DLSFSkHVKaRISKAna 63 (795)
=++||||..... ++..++-|++.+.++..
T Consensus 4 y~VkYLG~~~t~~~~Geg~t~~av~~I~~~~~~ 36 (133)
T cd01214 4 YTVLYLGNVLTIQARGEGCTEKALGKIWSKYEA 36 (133)
T ss_pred EEEEEcccccccccCCCccHHHHHHHHHHHHhh
Confidence 368999998865 22344556666555543
No 7
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=4.69 E-value=5.5e+02 Score=22.94 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=8.5
Q ss_pred eeEeeCceeccC
Q psy15339 36 KYKYLGSEITND 47 (795)
Q Consensus 36 SFKYLGVIIDSD 47 (795)
++||||..=-.+
T Consensus 2 ~vkYLGs~~V~~ 13 (140)
T PF00640_consen 2 EVKYLGSVEVSS 13 (140)
T ss_dssp EEEEEEEEEESS
T ss_pred EEEEEEEEEECC
Confidence 479999965443
No 8
>PLN03194 putative disease resistance protein; Provisional
Probab=4.36 E-value=7.8e+02 Score=25.63 Aligned_cols=77 Identities=10% Similarity=-0.063 Sum_probs=41.6
Q ss_pred hhhhhHHHhhhhhhhhccccccccc-Cchhhhhhhhh--eeecceehcccccccCCCC--hhhhhhhhhh-hhHhHHhhC
Q psy15339 51 QVEINKRIGIAKNAFWKHRDLMTRN-ISKTTKLRLLK--TYVFSILTYGCEAWTIHPE--NFPSIKLHFK-LPLYQTSLQ 124 (795)
Q Consensus 51 SkHVKaRISKAnaAFgkLRRLwRSR-LSrKTKrRLYK--SyVRPILEYGSEVWtLTKK--DiKKLERfQQ-nRCLRTILG 124 (795)
..++.+.|+.++.++.-+..-..+. -+..-...+++ ..|.||+ |+.+...++.. .....|.+++ +.+|+.+.+
T Consensus 71 ~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIF-Y~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~ 149 (187)
T PLN03194 71 FDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIF-CDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKY 149 (187)
T ss_pred HHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCCEEEEEE-ecCCHHHhhccccCCCCHHHHHHHHHHHHHHhc
Confidence 4566667777776666665533222 23333333332 3589998 88877766542 2223344422 556666555
Q ss_pred CCCC
Q psy15339 125 TSPL 128 (795)
Q Consensus 125 VSwl 128 (795)
....
T Consensus 150 l~G~ 153 (187)
T PLN03194 150 TVGL 153 (187)
T ss_pred cccc
Confidence 5443
No 9
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=4.08 E-value=5.5e+02 Score=22.73 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=25.8
Q ss_pred ccCCCchhhhhHHHhhhhhhhhccccccc
Q psy15339 45 TNDGRCQVEINKRIGIAKNAFWKHRDLMT 73 (795)
Q Consensus 45 DSDLSFSkHVKaRISKAnaAFgkLRRLwR 73 (795)
++.-+|++.|+..+.+|.+.+..++..+-
T Consensus 11 sS~~S~edAv~~Av~~A~kTl~ni~~~eV 39 (66)
T PF07311_consen 11 SSPKSWEDAVQNAVARASKTLRNIRWFEV 39 (66)
T ss_dssp EESSHHHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHhhchhCcEEEEE
Confidence 56788999999999999999999998763
No 10
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=3.94 E-value=6.3e+02 Score=25.74 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=21.5
Q ss_pred eeEeeCce-eccCCCchhhhhHHHhhhhhhhhcccc
Q psy15339 36 KYKYLGSE-ITNDGRCQVEINKRIGIAKNAFWKHRD 70 (795)
Q Consensus 36 SFKYLGVI-IDSDLSFSkHVKaRISKAnaAFgkLRR 70 (795)
.++|||.+ +-++. ...-..|...|..++.+++.
T Consensus 8 ~a~YlG~t~~~~~~--~~~~~tR~~~a~Eai~rik~ 41 (156)
T cd01208 8 RARYLGSTQLLCEK--TPSKNVRMXQAQEAVSRIKA 41 (156)
T ss_pred EEEeeceeeeeecC--CCChhhhHHHHHHHHHHHhc
Confidence 47899998 33332 34455677777777777763
Done!