Query psy15339
Match_columns 795
No_of_seqs 173 out of 675
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 18:25:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rw3_A POL polyprotein; RNA an 8.9 86 0.003 32.5 0.6 14 35-48 245-258 (455)
2 2cc6_A VNG1446H, dodecin; flav 5.5 3E+02 0.01 23.3 2.1 28 45-72 11-38 (68)
3 1aqc_A X11; PTB domain; 2.30A 5.5 2.7E+02 0.0092 26.0 2.1 35 34-69 9-43 (172)
4 3onr_A Protein transport prote 5.4 3.2E+02 0.011 23.5 2.2 31 43-73 11-41 (72)
5 2ux9_A Dodecin; flavoprotein; 5.2 3.2E+02 0.011 23.2 2.1 31 42-72 10-40 (69)
6 2yiz_A Dodecin; flavoprotein, 5.1 3.3E+02 0.011 23.1 2.2 31 42-72 10-40 (69)
7 2vxa_A Dodecin; flavoprotein, 5.0 3.3E+02 0.011 23.3 2.1 32 42-73 11-42 (72)
8 3so6_A LDL receptor adaptor pr 4.5 4.7E+02 0.016 22.6 2.8 28 36-63 7-34 (137)
9 1sau_A Sulfite reductase, desu 3.5 3.5E+02 0.012 24.8 1.2 89 24-127 4-110 (115)
10 4dbb_A Amyloid beta A4 precurs 3.5 4.5E+02 0.015 24.2 1.9 31 37-68 13-43 (162)
No 1
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=8.92 E-value=86 Score=32.54 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=10.1
Q ss_pred eeeEeeCceeccCC
Q psy15339 35 AKYKYLGSEITNDG 48 (795)
Q Consensus 35 DSFKYLGVIIDSDL 48 (795)
.+++|||..|+.++
T Consensus 245 ~~~~fLG~~i~~~g 258 (455)
T 1rw3_A 245 KQVKYLGYLLKEGQ 258 (455)
T ss_dssp SSCEETTEEESSSE
T ss_pred cceeEeeeeccCCe
Confidence 56688888887653
No 2
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=5.47 E-value=3e+02 Score=23.31 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=25.5
Q ss_pred ccCCCchhhhhHHHhhhhhhhhcccccc
Q psy15339 45 TNDGRCQVEINKRIGIAKNAFWKHRDLM 72 (795)
Q Consensus 45 DSDLSFSkHVKaRISKAnaAFgkLRRLw 72 (795)
+++-+|++.|+..+++|.+.+..|+..+
T Consensus 11 sS~~S~edAi~nAi~~AskTl~ni~~~e 38 (68)
T 2cc6_A 11 TSEESFTAAADDAIDRAEDTLDNVVWAE 38 (68)
T ss_dssp EESSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCeEEE
Confidence 5778999999999999999999999865
No 3
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=5.46 E-value=2.7e+02 Score=26.03 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=21.6
Q ss_pred EeeeEeeCceeccCCCchhhhhHHHhhhhhhhhccc
Q psy15339 34 VAKYKYLGSEITNDGRCQVEINKRIGIAKNAFWKHR 69 (795)
Q Consensus 34 VDSFKYLGVIIDSDLSFSkHVKaRISKAnaAFgkLR 69 (795)
+=.+||||++--...+ ..++..|...++.|+.+++
T Consensus 9 ~f~vkYLGs~eV~~~~-g~~~~~R~~~~~eAi~rl~ 43 (172)
T 1aqc_A 9 IFAANYLGSTQLLSDK-TPSKNVRMMQAQEAVSRIK 43 (172)
T ss_dssp EEEEEEEEEEEEECCS-SCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeceEEEecCCC-CCCcchhHHHHHHHHHHHH
Confidence 3458999998765332 3455556666666666554
No 4
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=5.39 E-value=3.2e+02 Score=23.46 Aligned_cols=31 Identities=10% Similarity=-0.071 Sum_probs=26.7
Q ss_pred eeccCCCchhhhhHHHhhhhhhhhccccccc
Q psy15339 43 EITNDGRCQVEINKRIGIAKNAFWKHRDLMT 73 (795)
Q Consensus 43 IIDSDLSFSkHVKaRISKAnaAFgkLRRLwR 73 (795)
.=++.-+|++.|+..+++|.+.+..++..+-
T Consensus 11 vGsS~~S~edAi~nAi~~AskTl~ni~~~eV 41 (72)
T 3onr_A 11 IGTSPTSWEQAAAEAVQRARDSVDDIRVARV 41 (72)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHhcccCCeEEEE
Confidence 3357889999999999999999999998753
No 5
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=5.19 E-value=3.2e+02 Score=23.22 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=26.7
Q ss_pred ceeccCCCchhhhhHHHhhhhhhhhcccccc
Q psy15339 42 SEITNDGRCQVEINKRIGIAKNAFWKHRDLM 72 (795)
Q Consensus 42 VIIDSDLSFSkHVKaRISKAnaAFgkLRRLw 72 (795)
+.=+++-+|++.|+..+++|.+.+..|+..+
T Consensus 10 lvGsS~~S~edAi~nAi~~AskTl~ni~~~e 40 (69)
T 2ux9_A 10 LVGTSEEGLEAAIQAALARARKTLRHLDWFE 40 (69)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHhcccCCeEEE
Confidence 3336788999999999999999999998865
No 6
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=5.14 E-value=3.3e+02 Score=23.13 Aligned_cols=31 Identities=10% Similarity=-0.066 Sum_probs=26.7
Q ss_pred ceeccCCCchhhhhHHHhhhhhhhhcccccc
Q psy15339 42 SEITNDGRCQVEINKRIGIAKNAFWKHRDLM 72 (795)
Q Consensus 42 VIIDSDLSFSkHVKaRISKAnaAFgkLRRLw 72 (795)
+.=+++-+|++.|+..+++|.+.+..|+..+
T Consensus 10 lvGsS~~S~edAi~nAi~~AskTl~ni~~~e 40 (69)
T 2yiz_A 10 IVGTSPDGVDAAIQGGLARAAQTMRALDWFE 40 (69)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHhcccCCeEEE
Confidence 3336788999999999999999999998865
No 7
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=5.02 E-value=3.3e+02 Score=23.29 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=27.2
Q ss_pred ceeccCCCchhhhhHHHhhhhhhhhccccccc
Q psy15339 42 SEITNDGRCQVEINKRIGIAKNAFWKHRDLMT 73 (795)
Q Consensus 42 VIIDSDLSFSkHVKaRISKAnaAFgkLRRLwR 73 (795)
+.=+++-+|++.|+..+++|.+.+..|+..+-
T Consensus 11 lvGsS~~S~edAi~nAi~~AskTl~ni~~~eV 42 (72)
T 2vxa_A 11 LTGSSPNGIEEAVNNAIARAGETLRHLRWFEV 42 (72)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHhhccCCeEEEE
Confidence 33367889999999999999999999998753
No 8
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=4.45 E-value=4.7e+02 Score=22.56 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=19.3
Q ss_pred eeEeeCceeccCCCchhhhhHHHhhhhh
Q psy15339 36 KYKYLGSEITNDGRCQVEINKRIGIAKN 63 (795)
Q Consensus 36 SFKYLGVIIDSDLSFSkHVKaRISKAna 63 (795)
.++|||..--.+..-.+.+.+.+.+.+.
T Consensus 7 ~v~YLGs~~v~~~~g~~~~~~Av~~l~~ 34 (137)
T 3so6_A 7 SLKYLGMTLVERPKGEELSAAAVKRIVA 34 (137)
T ss_dssp EEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred EEEEeeEEEecCCCChhHHHHHHHHHHH
Confidence 5799999988776666666555555443
No 9
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=3.53 E-value=3.5e+02 Score=24.85 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=49.1
Q ss_pred EEeCCeEEEeEeeeEeeCceeccCCCchhhhhHHHhhh--------------hhhhhccccccccc-Cchhhhhhhhhee
Q psy15339 24 IDVNGQVFEEVAKYKYLGSEITNDGRCQVEINKRIGIA--------------KNAFWKHRDLMTRN-ISKTTKLRLLKTY 88 (795)
Q Consensus 24 ITIGGe~IEqVDSFKYLGVIIDSDLSFSkHVKaRISKA--------------naAFgkLRRLwRSR-LSrKTKrRLYKSy 88 (795)
+.++|..|+. |+--|| +| -..|+++|+..+++. |.++..||.-+... .++.
T Consensus 4 m~~~g~~ie~-D~~GfL---~d-~~dW~eevA~~lA~~~~~~~egIeLTe~HW~VI~flR~~Y~e~~~~P~--------- 69 (115)
T 1sau_A 4 LEVKGKKLRL-DEDGFL---QD-WEEWDEEVAEALAKDTRFSPQPIELTEEHWKIIRYLRDYFIKYGVAPP--------- 69 (115)
T ss_dssp EEETTEEEEB-CTTSCB---SS-GGGCCHHHHHHHHTCTTSCSSCCCCCHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred EEECCEEEeE-CCCcCc---CC-hHhCCHHHHHHHHhcccCCcCCceECHHHHHHHHHHHHHHHHHCCCCc---------
Confidence 5677888874 433333 33 346999999999888 55666666655443 3333
Q ss_pred ecceehcccccccCCCChhhhhhhhhh---hhHhHHhhCCCC
Q psy15339 89 VFSILTYGCEAWTIHPENFPSIKLHFK---LPLYQTSLQTSP 127 (795)
Q Consensus 89 VRPILEYGSEVWtLTKKDiKKLERfQQ---nRCLRTILGVSw 127 (795)
||.+.-+....|+..+ ..+-|-...- .+..-+|.|.+.
T Consensus 70 iR~l~K~~~~~~g~~k-~s~yLy~LFP~GPak~a~kiAGLPK 110 (115)
T 1sau_A 70 VRMLVKHCKKEVRPDC-NLQYIYKLFPQGPAKDACRIAGLPK 110 (115)
T ss_dssp HHHHHHHHHHHTCTTC-CHHHHHHHSTTHHHHTHHHHTTCSC
T ss_pred HHHHHHHHHHHhCcch-hHHHHHHHCCCCHHHHHHHHhcCCC
Confidence 3444455556666555 4333443211 233334556654
No 10
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=3.48 E-value=4.5e+02 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=15.6
Q ss_pred eEeeCceeccCCCchhhhhHHHhhhhhhhhcc
Q psy15339 37 YKYLGSEITNDGRCQVEINKRIGIAKNAFWKH 68 (795)
Q Consensus 37 FKYLGVIIDSDLSFSkHVKaRISKAnaAFgkL 68 (795)
+||||.+--...+- .+...|+..+..|+.++
T Consensus 13 vkYLGs~eV~s~r~-~~~~~r~~~~~eAi~ri 43 (162)
T 4dbb_A 13 ANYLGSTQLLSDKT-PSKNVRMMQAQEAVSRI 43 (162)
T ss_dssp EEEEEEEEEEESSC-CCHHHHHHHHHHHHHTC
T ss_pred eEEEeEEEEcCCCC-CCcchhHHHHHHHHHHH
Confidence 89999965432111 12233444444554444
Done!