RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15339
(795 letters)
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat)
retrotransposon and non-LTR retrovirus reverse
transcriptase (RT). This subfamily contains both non-LTR
retrotransposons and non-LTR retrovirus RTs. RTs
catalyze the conversion of single-stranded RNA into
double-stranded DNA for integration into host
chromosomes. RT is a multifunctional enzyme with
RNA-directed DNA polymerase, DNA directed DNA polymerase
and ribonuclease hybrid (RNase H) activities.
Length = 220
Score = 38.8 bits (91), Expect = 0.005
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 1 MKINVKKSKYMRMSKKEHRRLTNIDVNGQVFEEVAKYKYLGSEI 44
+KIN KSK M + K+ R I +NG E V +KYLG I
Sbjct: 178 LKINPSKSKVMLIGNKKKRLKD-ITLNGTPIEAVETFKYLGVTI 220
>gnl|CDD|224584 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis].
Length = 187
Score = 37.2 bits (86), Expect = 0.014
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 58 IGIAKNAFWKHRDLMTRNISKTTKLRLLKTYVFSILTYGCEAWTIHPENFPSI----KLH 113
IG + + + T LR L Y F L T+ PEN SI KL
Sbjct: 99 IGYWLDPEYWGKGYATE------ALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLG 152
Query: 114 FKL 116
F+L
Sbjct: 153 FRL 155
>gnl|CDD|217421 pfam03200, Glyco_hydro_63, Mannosyl oligosaccharide glucosidase.
This is a family of eukaryotic enzymes belonging to
glycosyl hydrolase family 63. They catalyze the specific
cleavage of the non-reducing terminal glucose residue
from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide
glucosidase EC:3.2.1.106 is the first enzyme in the
N-linked oligosaccharide processing pathway.
Length = 775
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 111 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 167
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 168 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 201
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 139 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 195
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 196 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 229
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 167 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 223
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 224 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 257
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 195 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 251
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 252 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 285
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 223 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 279
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 280 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 313
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 251 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 307
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 308 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 341
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 279 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 335
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 336 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 369
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 307 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 363
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 364 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 397
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 335 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 391
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 392 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 425
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 363 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 419
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 420 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 453
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 391 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 447
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 448 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 481
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 419 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 475
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 476 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 509
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 447 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 503
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 504 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 537
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 475 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 531
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 532 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 565
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 503 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 559
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 560 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 593
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 531 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 587
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 588 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 621
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 559 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 615
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 616 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 649
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 587 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 643
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 644 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 677
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 615 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 671
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 672 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 705
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 643 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 699
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 700 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 733
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 671 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 727
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 728 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 761
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Score = 29.7 bits (67), Expect = 8.4
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 699 KLHFKLPLYQTSLQTSPLSNFTSNFPSIK---LHFKLPLYQTSLQTSPLSNFTSNFPSIK 755
LH K P TSP N ++ S + + + Q +LQTS +
Sbjct: 197 TLHLKSP-------TSPDDNLKTHHLSTRVPDVDKLSDIVQQNLQTSVKELVEKYGTQGE 249
Query: 756 LHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLP 789
LPL + + NF ++++ + P
Sbjct: 250 KLRYLPLPGAFVLRDLNNFEEGNFIAVQITLQGP 283
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.383
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,946,243
Number of extensions: 3357546
Number of successful extensions: 2505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2485
Number of HSP's successfully gapped: 57
Length of query: 795
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 690
Effective length of database: 6,280,432
Effective search space: 4333498080
Effective search space used: 4333498080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)