RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15339
         (795 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.059
 Identities = 70/410 (17%), Positives = 117/410 (28%), Gaps = 133/410 (32%)

Query: 31  FEEVAKYKYL-GSEI-----TNDGRCQVEINKRIGIAKNAFWKHRDLMTRNISKTTK--- 81
           FE      YL G++I              + K   + KN     R +  R   K +    
Sbjct: 91  FEN----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNSAL 145

Query: 82  ---------------------------LRLL-KTY------------------------V 89
                                      LR L +TY                         
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205

Query: 90  FSILTYGC--EAWTIHPENFPSIKLHFKLPLYQTSLQTSPLSNFTSNFPSIKLHFKLPLY 147
             + T G     W  +P N P          Y   L + P+S      P I +  +L  Y
Sbjct: 206 EKVFTQGLNILEWLENPSNTPD-------KDY---LLSIPIS-----CPLIGV-IQLAHY 249

Query: 148 QTSLQTSPLS--NFTSNFPSIKLHFKLPLYQTSLQTSP-LSNFTSNFPS-IKLHFKLPLY 203
             + +    +     S       H +  +   ++  +    +F  +    I + F + + 
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309

Query: 204 QTSLQTSPLSNFTSNFPSIKLHFKLPLYQTSLQT-----SP-LSNFTSNFPSIKLHFKLP 257
               +  P ++     PSI         + SL+      SP LS   SN    ++   + 
Sbjct: 310 --CYEAYPNTSLP---PSI--------LEDSLENNEGVPSPMLS--ISNLTQEQVQDYVN 354

Query: 258 LYQTSLQTSP-----LSNFTSNF----PSIKLH-FKLPL----YQTSLQTS--PLS---- 297
              + L         L N   N     P   L+   L L      + L  S  P S    
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414

Query: 298 NFTSNFPSIKLHFKLPLYQ--TSLQTSPLSNFTSNFPSIKLHFKLPLYQT 345
            F++ F  +   F   L    + L    L     +F +  +  ++P+Y T
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI--QIPVYDT 462



 Score = 33.9 bits (77), Expect = 0.26
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 38/114 (33%)

Query: 60   IAKNAFWKHRDLMTRNISKTTKLRLLKTYVFSILTYGCEAWTIHPENFPSIKLHFKLP-- 117
             A++  W   D   ++           TY FSIL        I   N  ++ +HF     
Sbjct: 1641 AAQDV-WNRADNHFKD-----------TYGFSILD-------IVINNPVNLTIHFGGEKG 1681

Query: 118  ----------LYQTSLQTSPLSN--FTS-NFPSIKLHFKLP---LYQTSLQTSP 155
                      +++T +     +   F   N  S    F+     L  T   T P
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-TQP 1734


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 6.1
 Identities = 60/393 (15%), Positives = 116/393 (29%), Gaps = 115/393 (29%)

Query: 1   MKINVKKSKYMR-MSKKEHRRLTNI--DV-NGQVFEEVAKYKYLGSEITNDGRCQVEINK 56
           ++I+  +++  R +  K +     +  +V N + +               +  C++    
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------------NLSCKI---- 268

Query: 57  RIGIAKNAFWKHRDLM-TRNISKTTKLRLLKTYVFSILTYGCEAWTIHPE-------NFP 108
                         L+ TR    T  L    T   S+      + T+ P+        + 
Sbjct: 269 --------------LLTTRFKQVTDFLSAATTTHISLDH---HSMTLTPDEVKSLLLKYL 311

Query: 109 SIKLHFKLPLYQTSLQTSPL-----SNFTSNFPSIKLHFKLPLY---QTSLQTSPLSNFT 160
             +    LP  +  L T+P      +    +  +   ++K        T +++S L+   
Sbjct: 312 DCRP-QDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLE 367

Query: 161 SN-----------FPSIKLHFKLP----------------------LYQTSLQTSPLSNF 187
                        FP       +P                      L++ SL        
Sbjct: 368 PAEYRKMFDRLSVFPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 188 TSNFPSIKLHFKLPL-YQTSLQTSPLS--NFTSNFPSIKLHFKLPL--YQTS-----LQT 237
           T + PSI L  K+ L  + +L  S +   N    F S  L     L  Y  S     L+ 
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFYSHIGHHLKN 483

Query: 238 SPLSNFTSNFPSIKLHF-----KLPLYQTSLQ-TSPLSNFTSNFPSIKLHF--KLPLYQT 289
                  + F  + L F     K+    T+   +  + N        K +     P Y+ 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 290 SLQTSPLSNFTSNFPSIKLHFK-LPLYQTSLQT 321
            +    + +F        +  K   L + +L  
Sbjct: 544 LVNA--ILDFLPKIEENLICSKYTDLLRIALMA 574


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,066,478
Number of extensions: 543169
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 15
Length of query: 795
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 694
Effective length of database: 3,881,772
Effective search space: 2693949768
Effective search space used: 2693949768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)