BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1534
(587 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|50880296|emb|CAH05070.1| Hrp59 protein [Chironomus tentans]
Length = 525
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 221/564 (39%), Positives = 299/564 (53%), Gaps = 117/564 (20%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+V +VE+ ND++GKPRG I+EF S D VR A++KM+R++ GR LVIKE D G
Sbjct: 48 VGEVAFVELFNDESGKPRGCGIIEFVSADSVRIALDKMNRYDLSGRNLVIKE---DSGNE 104
Query: 115 RNMGG------GGGVDRDLSALLQNNSSKFG-----------------NTYGLSPQFLES 151
R+ G G N+SS+ NTYGLS +FLE
Sbjct: 105 RDKYGFVIKPQGSYRRDRDDDRSYNDSSRSHGGGGNNHGNNSSNLENFNTYGLSVKFLEG 164
Query: 152 LGIN-CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
LGI PL NKVFVANLDYKVD KKL++VF+LAGKV +V+++LDKDG SRGF VE+DHP
Sbjct: 165 LGITQGPLHNKVFVANLDYKVDAKKLKQVFKLAGKVLSVDLSLDKDGNSRGFAVVEYDHP 224
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVAN 270
VEAVQSISM + Q LF+RR+TVR+DR+ D+ +G V+LPEGLKS+G+GLG NG PL+DVA
Sbjct: 225 VEAVQSISMFDRQTLFDRRMTVRLDRIPDKSEG-VKLPEGLKSVGIGLGPNGEPLRDVA- 282
Query: 271 WLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTNAEKDKI 330
RN + N ++ +
Sbjct: 283 ----------------RNLPNL-----------------------------QNNPSQNSM 297
Query: 331 GNLPNMNTNPTPTASVSTPAALAAAVTALTQAQQPPP---PQPSLGNLGLNLGLGGAAND 387
NL NTN P +S+S +L Q P P PQ N L G +
Sbjct: 298 SNL---NTNINPLSSLS---------NSLNQLTTPTPVAAPQ--------NSSLLGVPTN 337
Query: 388 LTSNLTSTLTSLAAANQNTAYPLNQLSSQSGLGQSNILSGMAAYSQGMQSQTSSLSSGNN 447
S L+ LAA QN L L S L + +LS AA + S +L++ N
Sbjct: 338 ------SNLSGLAAL-QNVVGGLTSLGGVSALSANPLLSSAAA---SLNSLGLNLTASNQ 387
Query: 448 VYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMD---YGGGSGQ-ASIQSGGYGNPRAGLD 503
NQ A ++++ N Y S + +G D +GG + + + Y N R
Sbjct: 388 NDVNQ-AQQQSMNQSSFNAYNTSGFNTGNRNDDMPSFGGNQIRNYNTSNDDYNNSRNFGG 446
Query: 504 SNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEW 563
S+ S Q S DT++V+NLP + TWQ LRDKFR+ G++KFAEI+G D G+VRF E
Sbjct: 447 SSSSRKQQS----DTILVRNLPSSWTWQNLRDKFRDVGEVKFAEIRGL-DTGVVRFSKER 501
Query: 564 TAKRAIDMMDRTRIDGKIIDVTFF 587
A AI ++D +R DG+++++ +F
Sbjct: 502 EADVAIKLLDGSRFDGRVVEIDYF 525
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V+N+ Y+V + L+++FR G+V VE+ D+ GK RG G +EF ++
Sbjct: 25 RIYVSNIAYEVRWQDLKDLFRKEVGEVAFVELFNDESGKPRGCGIIEFVSADSVRIALDK 84
Query: 220 LNNQNLFERRITVRMD 235
+N +L R + ++ D
Sbjct: 85 MNRYDLSGRNLVIKED 100
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 493 GGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRN-CGDIKFAEI--- 548
GG + R +RS ++S E + V N+ + WQ+L+D FR G++ F E+
Sbjct: 3 GGERSSRFDSSRDRSKDRS---ETRRIYVSNIAYEVRWQDLKDLFRKEVGEVAFVELFND 59
Query: 549 ---KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGK 580
K +G G++ F S + + A+D M+R + G+
Sbjct: 60 ESGKPRG-CGIIEFVSADSVRIALDKMNRYDLSGR 93
>gi|345494637|ref|XP_001603370.2| PREDICTED: myelin expression factor 2-like [Nasonia vitripennis]
Length = 559
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 229/571 (40%), Positives = 301/571 (52%), Gaps = 114/571 (19%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHRF+ KGRKLV+KE +
Sbjct: 67 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKVAVEKMHRFDIKGRKLVVKEDYDVER 126
Query: 110 DKGGRRNMGGGGGVDRDLSALLQN--------------------------NSSKFGNTYG 143
DK GR G RD Q+ + +KFGNTYG
Sbjct: 127 DKYGRLTTGRNNDRSRDDRFRDQSRPNSGRQNIPVPTGATGAGGTGAATSSDNKFGNTYG 186
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
LS QFLESLGI PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+ DKDGKSRGFG
Sbjct: 187 LSTQFLESLGIIGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELGKDKDGKSRGFG 246
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGA 263
VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK IGMGLGA G
Sbjct: 247 VVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLKGIGMGLGAGGN 305
Query: 264 PLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASK-TDS 322
L DVA RN V N++ VN S +
Sbjct: 306 RLTDVA-----------------RNIPNV--------------QPNNSPVVNPISAPVLT 334
Query: 323 TNAEKDKIGNLPNMNTNPTPTASVSTPAALAAAVTALTQAQQPPPPQPSLGNLGLNLGLG 382
T A + N+ PA LA TALT + LG NL
Sbjct: 335 TGAFGAGLNNV--------------VPAQLA---TALTNSNAAALQASLASGLGANLA-- 375
Query: 383 GAANDLTSNLTSTLTSLAAANQNT----AYPLNQLSSQSGLGQSNILSGMAAYSQGMQSQ 438
TS L S+LT+ A+N N A L L + QSN + +G+
Sbjct: 376 -----TTSLLNSSLTNELASNLNNFGQGAASLANLQASLANAQSN----NSFAPRGLSKL 426
Query: 439 TSSLS-SGNNVYSNQSAPSTDYSRNASNMYGNSR-YGSGGNEMDYGGGSGQASIQSGGYG 496
+ ++ GNN + N N +G++R + SG N D S + S+ +
Sbjct: 427 DNEVAFGGNNAFGN-------------NTFGSNRDFDSGFNRND----SERVSVGGAAFS 469
Query: 497 NPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGL 556
+ NR + S DT+V+ NLPP TWQ LRDK ++ G++KFAE++G D+G+
Sbjct: 470 TNAGQVGGNRQNSNGSRQMSDTIVIANLPPNTTWQMLRDKCQDIGEVKFAEMRG-ADVGM 528
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
VRF +EW A+RA+ +M+R+RIDG+ +DV +
Sbjct: 529 VRFATEWDAERAVSVMNRSRIDGRALDVRLY 559
>gi|242016244|ref|XP_002428739.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1,
putative [Pediculus humanus corporis]
gi|212513424|gb|EEB16001.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1,
putative [Pediculus humanus corporis]
Length = 508
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/224 (58%), Positives = 168/224 (75%), Gaps = 13/224 (5%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
+G+V +VE+ +D+ K +G IVEF+ P+ V+KA+ K+HR++ GRK+++KE D G
Sbjct: 63 IGEVAFVELFSDENDKSKGCGIVEFELPESVKKAIEKLHRYDIDGRKIIVKE---DNGTA 119
Query: 115 RNMGGG--GGVDRDLSALLQNN----SSK---FGNTYGLSPQFLESLGINCPLINKVFVA 165
R+ G GG DR+ + SSK +G TYGLSP FLE LGI PL+ +VFVA
Sbjct: 120 RDRYGSMRGGRDREREDRWEGGRDLPSSKPYTWGETYGLSPSFLEGLGIAPPLVCRVFVA 179
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV EKKLREVFRLAGKV +VE++LD DGKSRGF VE+DHPVE+VQ+ISML+NQ L
Sbjct: 180 NLDYKVTEKKLREVFRLAGKVRDVELSLDSDGKSRGFAVVEYDHPVESVQAISMLHNQPL 239
Query: 226 FERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVA 269
++RR+TVRMDRV D LD RLPEGL +IGMGLGANGAPL+D+A
Sbjct: 240 YDRRLTVRMDRV-DPLDTNSRLPEGLHNIGMGLGANGAPLRDIA 282
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 108/215 (50%), Gaps = 45/215 (20%)
Query: 374 NLGLNLGLGGAAN-DLTSNLTSTLTSLAAANQNTAYPLNQLSSQSGLGQSNILSGMAAYS 432
N G N LG A N DL + T+ LT+ A LS+ +GLG G
Sbjct: 338 NTGNNSLLGPAGNLDLLARTTNDLTARDLA----------LSNLAGLG------GNLVNQ 381
Query: 433 QGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDYGGGSGQASIQS 492
+ S S ++GN NQ AP+ D +G S G ++G S + +I S
Sbjct: 382 NNLNSSLGS-NAGNTGLGNQ-APNRD-------GFGERDLRSLGTNSNFGAASARNNIMS 432
Query: 493 GGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG 552
G P++ DTV+V NLP TWQ L+DKFR+ G+IKFAE++GK
Sbjct: 433 SG--GPKSS---------------DTVIVDNLPHNFTWQNLKDKFRDVGNIKFAEMRGK- 474
Query: 553 DIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
+GL+RF SEW A RA+ +MD +RIDG+ IDV F
Sbjct: 475 -LGLIRFASEWEAHRAVSLMDNSRIDGQNIDVRLF 508
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLA-GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+VFV+NL Y + L+++FR G+V VE+ D++ KS+G G VEF+ P ++I
Sbjct: 40 RVFVSNLPYDYRWQDLKDLFRKEIGEVAFVELFSDENDKSKGCGIVEFELPESVKKAIEK 99
Query: 220 LNNQNLFERRITVRMD 235
L+ ++ R+I V+ D
Sbjct: 100 LHRYDIDGRKIIVKED 115
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V V NLP WQ+L+D FR G++ F E+ K KG G+V F+ + K+AI+
Sbjct: 41 VFVSNLPYDYRWQDLKDLFRKEIGEVAFVELFSDENDKSKG-CGIVEFELPESVKKAIEK 99
Query: 572 MDRTRIDGKIIDV 584
+ R IDG+ I V
Sbjct: 100 LHRYDIDGRKIIV 112
>gi|357619139|gb|EHJ71829.1| Hrp59 protein [Danaus plexippus]
Length = 514
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/233 (53%), Positives = 163/233 (69%), Gaps = 19/233 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VGDV YVE+ ND+ GKPRG +VEF + + ++KA+ MHR+E GRKLV+KE ++ R
Sbjct: 62 VGDVAYVELFNDENGKPRGCGVVEFSNSEAMKKALFVMHRYELNGRKLVLKEETGNERNR 121
Query: 115 ------------RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
RNM D+D + + + NTYGLS QFLES+ + PL+ KV
Sbjct: 122 LNSVRSGGGGGGRNMR----EDKDGWGVNKPREPENFNTYGLSLQFLESINVQPPLVKKV 177
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
FVANLDYK D K++EVF++AGKV N+++A+DKDG SRGF +E+DHPVEAVQ+ISM +
Sbjct: 178 FVANLDYKADRAKIKEVFKMAGKVRNIDLAIDKDGNSRGFAVIEYDHPVEAVQAISMFDK 237
Query: 223 QNLFERRITVRMDR-VADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQ 274
Q L+ERR+TVRMDR V D+ + +RLPEGLKSIG+GLG NG PL+DVA L Q
Sbjct: 238 QMLYERRMTVRMDRGVTDKSE--LRLPEGLKSIGIGLGPNGEPLRDVARNLPQ 288
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 10/90 (11%)
Query: 486 GQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKF 545
G ++ GYG R Q + + D V++ NLPPT+TWQ +R+KF CGD+K+
Sbjct: 426 GSVTVPGQGYG---------RDGQQGRDKQSDIVIITNLPPTVTWQLIREKFSECGDVKY 476
Query: 546 AEIKGKGDIGLVRFDSEWTAKRAIDMMDRT 575
AE+ D +VRF EW A+RA+ ++ +T
Sbjct: 477 AEMTAP-DTAIVRFHKEWDAERAVSILLKT 505
>gi|91076808|ref|XP_974319.1| PREDICTED: similar to Hrp59 CG9373-PA [Tribolium castaneum]
gi|270001929|gb|EEZ98376.1| hypothetical protein TcasGA2_TC000835 [Tribolium castaneum]
Length = 573
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/238 (53%), Positives = 158/238 (66%), Gaps = 27/238 (11%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE---AVE 109
S VGDV +VE+ DD K RG IVEF P V+K + M RFE K RKL+IKE +
Sbjct: 70 SQVGDVQFVELFVDDNDKSRGCGIVEFSDPGSVKKCLEVMQRFEVKTRKLIIKEDAGNIR 129
Query: 110 DKGGRRNMGGGGGVDR------------DLSALLQNNS------SKFGNTYGLSPQFLES 151
DK G N+ GG G R D L N S +K+GNTYGLSP FLES
Sbjct: 130 DKHG--NIIGGSGSKRGRDENRYRDERYDSQQSLSNRSGPEVPENKWGNTYGLSPHFLES 187
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
L I PL N+VFVANL+Y VD+KKL+EVFRLAG++ V++ DKDG+SRGF +E+DHPV
Sbjct: 188 LRIETPLCNRVFVANLEYNVDKKKLKEVFRLAGRIVRVDLHTDKDGRSRGFAIIEYDHPV 247
Query: 212 EAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVA 269
EAVQ+ISM +NQ L++R ++VR+DR + L +LPEGLK IGMGLG NG PL+DVA
Sbjct: 248 EAVQAISMFHNQVLYDRPMSVRIDRANETL----KLPEGLKGIGMGLGTNGEPLRDVA 301
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 461 RNASNMYGNSRYGSGGNEMDYGGGS--GQASIQSGGYGNPRAGLDSNRSMNQSSNIE--- 515
RN N S G+G +GGGS G S+ SG GN R+ N +SN++
Sbjct: 444 RNFPNYETKSSTGAG---YSFGGGSRDGYGSL-SGSLGNLGGTGQLLRNQNSASNVKDGG 499
Query: 516 --RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMD 573
V+V NLP + +++ L +KF GD++ E KG G + L+ + ++W A+RAI +D
Sbjct: 500 GFSRKVLVSNLPASASYKMLSEKFNEFGDVQHIEEKGTGTM-LIVYSADWQAERAIKNLD 558
Query: 574 RTRIDGKIIDVTFF 587
R RIDG+ I+ F
Sbjct: 559 RARIDGRTIEARLF 572
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+V+N+ Y+ + L+++FR G V+ VE+ +D + KSRG G VEF P
Sbjct: 47 NC----RVYVSNIPYEYRWQDLKDLFRSQVGDVQFVELFVDDNDKSRGCGIVEFSDPGSV 102
Query: 214 VQSISMLNNQNLFERRITVRMD 235
+ + ++ + R++ ++ D
Sbjct: 103 KKCLEVMQRFEVKTRKLIIKED 124
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSE 562
+SSN V V N+P WQ+L+D FR+ GD++F E+ K +G G+V F
Sbjct: 44 KSSNCR---VYVSNIPYEYRWQDLKDLFRSQVGDVQFVELFVDDNDKSRG-CGIVEFSDP 99
Query: 563 WTAKRAIDMMDRTRI 577
+ K+ +++M R +
Sbjct: 100 GSVKKCLEVMQRFEV 114
>gi|193697751|ref|XP_001948840.1| PREDICTED: myelin expression factor 2-like [Acyrthosiphon pisum]
Length = 490
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 157/239 (65%), Gaps = 27/239 (11%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE--AVEDKG 112
VGDV++V + +D+ K RG VEF D +KA++KMHRF+ GRKLV+KE DK
Sbjct: 47 VGDVSFVVVYSDEKDKSRGCGTVEFDRVDSAQKAIDKMHRFDINGRKLVVKEDDIDRDKT 106
Query: 113 GRRNMGGGGGVD-----------------------RDLSALLQNNSSKFGNTYGLSPQFL 149
GR G R S + ++ ++ NTYGLSPQFL
Sbjct: 107 GRPLPNGPRSSGGGGGGGGGGVGGGGGGGNIPTSIRSASRMPVSDDFQWDNTYGLSPQFL 166
Query: 150 ESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDH 209
ESL I PLIN++FVANLDYKVDEKKL+EVF+LAG+V VEI DK+GKS+G+G VE++H
Sbjct: 167 ESLHIRGPLINRIFVANLDYKVDEKKLKEVFKLAGRVLEVEIFSDKEGKSKGYGVVEYNH 226
Query: 210 PVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
PVEAVQ+ISM NNQ LFER +++R+DR D RLPEGLKSIGMGLGA GAPL DV
Sbjct: 227 PVEAVQAISMFNNQFLFERPMSIRLDRTDK--DPLARLPEGLKSIGMGLGAGGAPLHDV 283
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 27/234 (11%)
Query: 372 LGNLGLNLGLGGAA-NDLTSNLTSTLTSLAAANQNTAYPLNQLSSQSGLGQSNILSGMAA 430
L ++G+ LG GGA +D+ NL S TS + +Q+ P+N S L +LSG++A
Sbjct: 266 LKSIGMGLGAGGAPLHDVERNLPSNNTS-SNQSQSLTTPVNT----SALA---VLSGLSA 317
Query: 431 YSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEM----------- 479
G+++Q G N N SA + +G+ SG M
Sbjct: 318 DRLGIETQNRRSLGGVNGLGNLSASDLGIGTSLGAAFGSGMNTSGPGSMNSSSLHQNSLG 377
Query: 480 --DYGGGS-GQASIQSGG--YG-NPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQEL 533
DY S G + SGG +G + R+GL + DT++VKNLP TWQ L
Sbjct: 378 GRDYDSLSLGVRNSNSGGGAFGADFRSGLGGGDMHMGMGPKKSDTIMVKNLPSNTTWQSL 437
Query: 534 RDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
+D FR+CGDIKF+E+ KG G++RF SEW A+RAI + + +R DG +I+V +F
Sbjct: 438 KDYFRDCGDIKFSEVGSKG-FGIIRFASEWDAERAITLKNMSRFDGHLIEVVYF 490
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 159 INKVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
KVFV+N+ Y+ K+L+E+F+ G V V + D+ KSRG GTVEFD A ++I
Sbjct: 22 CKKVFVSNIPYEFKWKELKELFKKEVGDVSFVVVYSDEKDKSRGCGTVEFDRVDSAQKAI 81
Query: 218 SMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKS 253
++ ++ R++ V+ D + DR LP G +S
Sbjct: 82 DKMHRFDINGRKLVVKEDDI-DRDKTGRPLPNGPRS 116
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIG 555
D +RS +S V V N+P W+EL++ F+ GD+ F + K +G G
Sbjct: 9 DRSRSPLRSRKSGCKKVFVSNIPYEFKWKELKELFKKEVGDVSFVVVYSDEKDKSRG-CG 67
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
V FD +A++AID M R I+G+ + V
Sbjct: 68 TVEFDRVDSAQKAIDKMHRFDINGRKLVV 96
>gi|383855600|ref|XP_003703298.1| PREDICTED: myelin expression factor 2-like [Megachile rotundata]
Length = 542
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/248 (55%), Positives = 166/248 (66%), Gaps = 32/248 (12%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHR++ KGRKLV+KE +
Sbjct: 77 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEKMHRYDIKGRKLVVKEDFDVER 136
Query: 110 DKGGRRNMG------------------GGGGVDRDLSALLQNNS----------SKFGNT 141
DK GR G GGG + + A +KFGNT
Sbjct: 137 DKYGRLATGRNNDRVRDDRFRDPPRPQGGGRQNMNPPAGGGGGGGGGGGGGGGDNKFGNT 196
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+ DKDGKSRG
Sbjct: 197 YGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELGKDKDGKSRG 256
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
FG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK IGMGLGA
Sbjct: 257 FGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLKGIGMGLGAG 315
Query: 262 GAPLQDVA 269
G L DVA
Sbjct: 316 GNRLMDVA 323
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
DT+++ NLPP TWQ LRDKF++ G++KFAE++G D+G+VRF SEW A+RA+ MM+R+R
Sbjct: 473 DTILIGNLPPNTTWQMLRDKFQDVGEVKFAEMRGT-DMGMVRFASEWDAERAVSMMNRSR 531
Query: 577 IDGKIIDVTFF 587
IDG+ IDV +
Sbjct: 532 IDGRTIDVRLY 542
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P +++V+N+ Y + L+++FR GKV +VE+ D++ K RG G VEF+
Sbjct: 52 PSDRRIYVSNIPYDFRWQDLKDLFRTEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKI 111
Query: 216 SISMLNNQNLFERRITVRMDRVADR 240
++ ++ ++ R++ V+ D +R
Sbjct: 112 AVEKMHRYDIKGRKLVVKEDFDVER 136
>gi|328784140|ref|XP_395436.3| PREDICTED: myelin expression factor 2 [Apis mellifera]
Length = 544
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 165/250 (66%), Gaps = 34/250 (13%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHR++ KGRKLV+KE +
Sbjct: 77 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEKMHRYDIKGRKLVVKEDFDVER 136
Query: 110 DKGGR-------------------RNMGGG-----------GGVDRDLSALLQNNSSKFG 139
DK GR R GGG GG SKFG
Sbjct: 137 DKYGRLATARNNERVRDDRFRDPPRPQGGGRQNMNAPAGGGGGGGGGGGGGGGGGDSKFG 196
Query: 140 NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKS 199
NTYGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+ DKDGKS
Sbjct: 197 NTYGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELGKDKDGKS 256
Query: 200 RGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
RGFG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK IGMGLG
Sbjct: 257 RGFGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLKGIGMGLG 315
Query: 260 ANGAPLQDVA 269
A G L DVA
Sbjct: 316 AGGNRLMDVA 325
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
DT+++ NLPP TWQ LRDKF++ G++KFAE++G D+G+VRF SEW A+RA+ MM+R+R
Sbjct: 475 DTILIGNLPPNTTWQMLRDKFQDVGEVKFAEMRGT-DMGMVRFASEWDAERAVSMMNRSR 533
Query: 577 IDGKIIDVTFF 587
IDG+ IDV +
Sbjct: 534 IDGRTIDVRLY 544
>gi|340714953|ref|XP_003395986.1| PREDICTED: myelin expression factor 2-like [Bombus terrestris]
Length = 546
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 165/253 (65%), Gaps = 37/253 (14%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHR++ KGRKLV+KE +
Sbjct: 76 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEKMHRYDIKGRKLVVKEDFDVER 135
Query: 110 DKGGR-------------------RNMGGG--------------GGVDRDLSALLQNNSS 136
DK GR R GGG GG S
Sbjct: 136 DKYGRLATARNNERVRDDRFRDPPRPQGGGRQNMNAPAGGGGGGGGGGGGGGGGGGGGDS 195
Query: 137 KFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD 196
KFGNTYGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+ DKD
Sbjct: 196 KFGNTYGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELGKDKD 255
Query: 197 GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
GKSRGFG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK IGM
Sbjct: 256 GKSRGFGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLKGIGM 314
Query: 257 GLGANGAPLQDVA 269
GLGA G L DVA
Sbjct: 315 GLGAGGNRLMDVA 327
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
DT+++ NLPP TWQ LRDKF++ G++KFAE++G D+G+VRF SEW A+RA+ MM+R+R
Sbjct: 477 DTILIGNLPPNTTWQMLRDKFQDVGEVKFAEMRGT-DMGMVRFASEWDAERAVSMMNRSR 535
Query: 577 IDGKIIDVTFF 587
IDG+ IDV +
Sbjct: 536 IDGRTIDVRLY 546
>gi|350402014|ref|XP_003486336.1| PREDICTED: myelin expression factor 2-like [Bombus impatiens]
Length = 546
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/253 (55%), Positives = 165/253 (65%), Gaps = 37/253 (14%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHR++ KGRKLV+KE +
Sbjct: 76 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEKMHRYDIKGRKLVVKEDFDVER 135
Query: 110 DKGGR-------------------RNMGGG--------------GGVDRDLSALLQNNSS 136
DK GR R GGG GG S
Sbjct: 136 DKYGRLATARNNERVRDDRFRDPPRPQGGGRQNMNAPAGGGGGGGGGGGGGGGGGGGGDS 195
Query: 137 KFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD 196
KFGNTYGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+ DKD
Sbjct: 196 KFGNTYGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELGKDKD 255
Query: 197 GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
GKSRGFG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK IGM
Sbjct: 256 GKSRGFGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLKGIGM 314
Query: 257 GLGANGAPLQDVA 269
GLGA G L DVA
Sbjct: 315 GLGAGGNRLMDVA 327
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
DT+++ NLPP TWQ LRDKF++ G++KFAE++G D+G+VRF SEW A+RA+ MM+R+R
Sbjct: 477 DTILIGNLPPNTTWQMLRDKFQDVGEVKFAEMRG-SDMGMVRFASEWDAERAVSMMNRSR 535
Query: 577 IDGKIIDVTFF 587
IDG+ IDV +
Sbjct: 536 IDGRTIDVRLY 546
>gi|332022821|gb|EGI63094.1| Myelin expression factor 2 [Acromyrmex echinatior]
Length = 631
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 138/257 (53%), Positives = 167/257 (64%), Gaps = 41/257 (15%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHR++ KGRKLV+KE +
Sbjct: 125 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEKMHRYDIKGRKLVVKEDFDVER 184
Query: 110 DKGGRRNMGGG----------------GGVDRDLSA---------------------LLQ 132
DK GR G GG +++SA
Sbjct: 185 DKYGRLATGRNNDRNRDDRFRDPPRPQGGGRQNMSAPSGGGGGGGGGGGGGGGGGGGGGG 244
Query: 133 NNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA 192
+KFGNTYGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+
Sbjct: 245 GGDNKFGNTYGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELG 304
Query: 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
DKDGKSRGFG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK
Sbjct: 305 KDKDGKSRGFGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLK 363
Query: 253 SIGMGLGANGAPLQDVA 269
IGMGLGA G L DVA
Sbjct: 364 GIGMGLGAGGNRLLDVA 380
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V+N+ Y + L+++FR GKV +VE+ D++ K RG G VEF+ ++
Sbjct: 104 RIYVSNIPYDFRWQDLKDLFRTEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEK 163
Query: 220 LNNQNLFERRITVRMDRVADR 240
++ ++ R++ V+ D +R
Sbjct: 164 MHRYDIKGRKLVVKEDFDVER 184
>gi|307166569|gb|EFN60632.1| Myelin expression factor 2 [Camponotus floridanus]
Length = 582
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 167/253 (66%), Gaps = 39/253 (15%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE---DK 111
VG V +VE+ D+ KPRG IVEF+ D V+ AV+KMHR++ KGRKLV+KE + DK
Sbjct: 79 VGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVDKMHRYDIKGRKLVVKEDFDVERDK 138
Query: 112 GGRRNMGGG----------------GGVDRDLSA-------------------LLQNNSS 136
GR G GG +++SA +
Sbjct: 139 YGRLATGRNNDRNRDDRFRDPPRPQGGGRQNMSAPSGGGGGGSSGGGGGGGGGGGGGGDN 198
Query: 137 KFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD 196
KFGNTYGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAGKV +VE+ DKD
Sbjct: 199 KFGNTYGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAGKVLHVELGKDKD 258
Query: 197 GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
GKSRGFG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P +LPEGLK IGM
Sbjct: 259 GKSRGFGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMPPKLPEGLKGIGM 317
Query: 257 GLGANGAPLQDVA 269
GLGA G L DVA
Sbjct: 318 GLGAGGNRLLDVA 330
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V+N+ Y + L+++FR GKV +VE+ D++ K RG G VEF+ ++
Sbjct: 56 RIYVSNIPYDFRWQDLKDLFRNEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVDK 115
Query: 220 LNNQNLFERRITVRMDRVADR 240
++ ++ R++ V+ D +R
Sbjct: 116 MHRYDIKGRKLVVKEDFDVER 136
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
+ V N+P WQ+L+D FRN G + E+ K +G G+V F+ + K A+D
Sbjct: 57 IYVSNIPYDFRWQDLKDLFRNEVGKVAHVELFTDENDKPRG-CGIVEFEDSDSVKIAVDK 115
Query: 572 MDRTRIDGKIIDV 584
M R I G+ + V
Sbjct: 116 MHRYDIKGRKLVV 128
>gi|322797030|gb|EFZ19344.1| hypothetical protein SINV_12899 [Solenopsis invicta]
Length = 615
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/265 (51%), Positives = 164/265 (61%), Gaps = 49/265 (18%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG IVEF+ D V+ AV KMHR++ KGRKLV+KE +
Sbjct: 71 TEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEKMHRYDIKGRKLVVKEDFDVER 130
Query: 110 DK--------------------------GGRRNMGGGGGVDRDLSALLQNNS-------- 135
DK GGR+NM G
Sbjct: 131 DKYGRLATGRNNDRNRDDRFRDPPRPQGGGRQNMSAPSGTGGGGGGGGGGGGGGGGGGGG 190
Query: 136 -----------SKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
+KFGNTYGLS QFLESLGIN PL+ +VFVANLDYKVDEKKL EVF+LAG
Sbjct: 191 GGGGGGGGGGDNKFGNTYGLSTQFLESLGINGPLVTRVFVANLDYKVDEKKLLEVFKLAG 250
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGP 244
KV +VE+ DKDGKSRGFG VE+DHPVE+VQ+ISML+NQ L++RR+TVR+DR A+ D P
Sbjct: 251 KVLHVELGKDKDGKSRGFGVVEYDHPVESVQAISMLHNQQLYDRRMTVRLDR-ANEPDMP 309
Query: 245 VRLPEGLKSIGMGLGANGAPLQDVA 269
+LPEGLK IGMGLGA G L DVA
Sbjct: 310 PKLPEGLKGIGMGLGAGGNRLLDVA 334
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V+N+ Y + L+++FR GKV +VE+ D++ K RG G VEF+ ++
Sbjct: 50 RIYVSNIPYDFRWQDLKDLFRTEVGKVAHVELFTDENDKPRGCGIVEFEDSDSVKIAVEK 109
Query: 220 LNNQNLFERRITVRMDRVADR 240
++ ++ R++ V+ D +R
Sbjct: 110 MHRYDIKGRKLVVKEDFDVER 130
>gi|307214931|gb|EFN89776.1| Myelin expression factor 2 [Harpegnathos saltator]
Length = 546
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 155/220 (70%), Gaps = 6/220 (2%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--- 109
+ VG V +VE+ D+ KPRG I+EF+ + V+ AV KMHR++ KGRKLV+KE +
Sbjct: 94 TEVGKVAHVELFTDENDKPRGCGIMEFEDSESVKIAVEKMHRYDIKGRKLVVKEDFDVER 153
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
DK GR + G DR + G QFLESLGIN PL+ +VFVANLDY
Sbjct: 154 DKYGR--LTTGRNNDRTRDDRFRGPPRPQGGGRQNITQFLESLGINGPLVTRVFVANLDY 211
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KVDEKKL EVF+LAGKV +VE+ DKDGKSRGFG VE+DHPVE+VQ+ISML+NQ LF+RR
Sbjct: 212 KVDEKKLLEVFKLAGKVLHVELGKDKDGKSRGFGVVEYDHPVESVQAISMLHNQQLFDRR 271
Query: 230 ITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVA 269
+TVR+DR A+ D P +LPEGLK IGMGLGA G L DVA
Sbjct: 272 MTVRLDR-ANEPDMPPKLPEGLKGIGMGLGAGGNRLLDVA 310
>gi|241781520|ref|XP_002400282.1| 29 kDa ribonucleoprotein B, putative [Ixodes scapularis]
gi|215510713|gb|EEC20166.1| 29 kDa ribonucleoprotein B, putative [Ixodes scapularis]
Length = 364
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 147/215 (68%), Gaps = 4/215 (1%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VGDV+YVE+ D+ GK RG IVE + V KA+ +HR+E KGR LV+KE + R
Sbjct: 37 VGDVSYVELFEDENGKFRGCGIVELKDKSSVPKAIEVLHRYEMKGRFLVVKERMSMMDDR 96
Query: 115 RNMGGGGG-VDRDLSALLQNNSSKFG-NTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
G G V R +++++ YGLSPQFL+SLGI PL N++FVANLDYKV
Sbjct: 97 DYTGRAGSLVGRYGASVMREVRGAVELQHYGLSPQFLDSLGIVGPLSNRIFVANLDYKVT 156
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
KKL+E+FRLAG+V NV++ DKDG S+G G VEFDHP+EAVQ+ISM N Q L+ R ++V
Sbjct: 157 SKKLQEIFRLAGRVINVDLRTDKDGNSKGHGIVEFDHPIEAVQAISMFNGQKLYSRSMSV 216
Query: 233 RMDRVADRLDG--PVRLPEGLKSIGMGLGANGAPL 265
RMD+ + LDG P +LP GL+S+G GLGA G PL
Sbjct: 217 RMDKYNEDLDGSLPSKLPNGLQSVGKGLGAGGNPL 251
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 524 LPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
LP TWQ LRD+FR+ G +++ ++KG+G +VRF+SE A+RA+ ++
Sbjct: 280 LPMNYTWQNLRDRFRDVGTVRYTDVKGRG-TAVVRFNSERDAQRAVGIL 327
>gi|195389424|ref|XP_002053377.1| GJ23846 [Drosophila virilis]
gi|194151463|gb|EDW66897.1| GJ23846 [Drosophila virilis]
Length = 644
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 215/393 (54%), Gaps = 73/393 (18%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE---AVEDK 111
VG + YV++ +D++GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+KE D+
Sbjct: 84 VGSIEYVQLFHDESGKARGCGIVEFKDPENVQKAMEKMNRYELNGRELVVKEDHGEQRDQ 143
Query: 112 GGR---------------------------RNMGGGGGVDRDLSA-----LLQN--NSSK 137
GR R+ G D +S ++ N NSS
Sbjct: 144 YGRIVRDGAGGGGGGVGGGGNGGGRDHMDDRDRGFSRRDDDRISGRNNFNMMSNDFNSSN 203
Query: 138 FGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG 197
+ N YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G
Sbjct: 204 Y-NLYGLSASFLESLGISGPLHNKVFVANLDYKVDSKKLKQVFKLAGKVQSVDLSLDKEG 262
Query: 198 KSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMG 257
SRGF VE+DHPVEAVQ+ISML+ Q L++RR+TVR+DR+ D+ +G ++LPEGL +G+G
Sbjct: 263 HSRGFAVVEYDHPVEAVQAISMLDRQMLYDRRMTVRLDRIPDKGEG-LKLPEGLGGVGIG 321
Query: 258 LGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTA 317
LG NG PL+DVA+ L Q S ++ N + + +L + N +
Sbjct: 322 LGPNGEPLKDVAHNLPNGGNQNASQLLGNVQSAQ-------QLSAVAGGQVVGGGNSNAS 374
Query: 318 SKTDSTNAEKDKIGNLPNMNTNPTPTASVSTP-----------------------AALAA 354
+ S + GN P + P+P A V P AA+
Sbjct: 375 NLLGSLSGV--MFGNNPAV--QPSPVAPVQKPSMGNNPGGGGGGINLNNLNPSNLAAVVG 430
Query: 355 AVTALTQAQQPPPPQPSLGNLGLNLGLGGAAND 387
+ L A P SL LGLNLG G +D
Sbjct: 431 NLGNLGAALSNPLLTSSLNTLGLNLGNAGGNDD 463
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 59 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENV 114
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N L R + V+ D R
Sbjct: 115 QKAMEKMNRYELNGRELVVKEDHGEQR 141
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 16/84 (19%)
Query: 512 SNIERDT--------VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGL 556
SNI RD V + N+P WQ+L+D FR G I++ ++ K +G G+
Sbjct: 47 SNIARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARG-CGI 105
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGK 580
V F ++A++ M+R ++G+
Sbjct: 106 VEFKDPENVQKAMEKMNRYELNGR 129
>gi|195111468|ref|XP_002000300.1| GI22600 [Drosophila mojavensis]
gi|193916894|gb|EDW15761.1| GI22600 [Drosophila mojavensis]
Length = 648
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 154/405 (38%), Positives = 214/405 (52%), Gaps = 92/405 (22%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE---AVEDK 111
VG + YV++ +D+ GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+KE D+
Sbjct: 84 VGSIEYVQLFHDENGKARGCGIVEFKDPENVQKAMEKMNRYELNGRELVVKEDHGEQRDQ 143
Query: 112 GGR---------------------------------RNMGGGGGVDRDLSA-----LLQN 133
GR R+ G D +S ++ N
Sbjct: 144 YGRIVRDGAGGGGGGGAGGGGGGGGGNGGGRDHMDDRDRGFSRRDDDRISGRNNFNMMSN 203
Query: 134 --NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEI 191
NSS + N YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V++
Sbjct: 204 DFNSSNY-NLYGLSASFLESLGISGPLHNKVFVANLDYKVDSKKLKQVFKLAGKVQSVDL 262
Query: 192 ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGL 251
+LDK+G SRGF VE+DHPVEAVQ+ISML+ Q L++RR+TVR+DR+ D+ +G ++LPEGL
Sbjct: 263 SLDKEGHSRGFAVVEYDHPVEAVQAISMLDRQMLYDRRMTVRLDRIPDKSEG-LKLPEGL 321
Query: 252 KSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDA 311
+G+GLG NG PL+DVA+ L Q + ++ N + L
Sbjct: 322 GGVGIGLGPNGEPLKDVAHNLPNGGNQNATQLLGNVQGAQQL------------------ 363
Query: 312 ASVNTASKTDSTNAEKDKIGNLP------NMNTNPTPTASVSTP---------------- 349
++V + N+ + +G+L N P+P A V P
Sbjct: 364 SAVPGGAVVGGGNSNANLLGSLSGVMFGNNAAVQPSPVAPVQKPSMGNNAGGGGGGINLN 423
Query: 350 -------AALAAAVTALTQAQQPPPPQPSLGNLGLNLGLGGAAND 387
AA+ + L A P SL LGLNLG G +D
Sbjct: 424 NLNPSNLAAVVGNLGNLGAALSNPLLTSSLSTLGLNLGNTGGNDD 468
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D++GK+RG G VEF P
Sbjct: 59 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDENGKARGCGIVEFKDPENV 114
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N L R + V+ D R
Sbjct: 115 QKAMEKMNRYELNGRELVVKEDHGEQR 141
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 62 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDENGKARG-CGIVEFKDPENVQKAMEK 120
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 121 MNRYELNGR 129
>gi|157137653|ref|XP_001657115.1| myelinprotein expression factor [Aedes aegypti]
gi|108880772|gb|EAT44997.1| AAEL003670-PA [Aedes aegypti]
Length = 541
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/243 (50%), Positives = 160/243 (65%), Gaps = 42/243 (17%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV---EDK 111
VGDV++VE+ +D+ KPRG IVEF+ + V+ A++KM+RF+ GR+LVIKE DK
Sbjct: 66 VGDVSFVELFHDENNKPRGCGIVEFEKAEHVQAALDKMNRFDINGRQLVIKEDYGNERDK 125
Query: 112 GGR------------------------RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQ 147
GR GGG + D NTYGLS +
Sbjct: 126 YGRVVPKSFRGDRDDSSRRRDRDDDRISGRDDGGGFNPDF------------NTYGLSIK 173
Query: 148 FLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
FLE LGI PL ++F+ANLDYKVD KKL++VF++AGKV+NV++++DKDG SRGF VE+
Sbjct: 174 FLEGLGIQGPLHTRIFIANLDYKVDAKKLKQVFKMAGKVQNVDLSVDKDGNSRGFAVVEY 233
Query: 208 DHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPV-RLPEGLKSIGMGLGANGAPLQ 266
DHPVEAVQ+ISM + Q LF+RR+TVR+DRV ++ G + RLPEGLK IG+GLG NG PL+
Sbjct: 234 DHPVEAVQAISMFDRQMLFDRRMTVRLDRVPEK--GELNRLPEGLKGIGIGLGPNGEPLK 291
Query: 267 DVA 269
DVA
Sbjct: 292 DVA 294
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 495 YGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDI 554
YG G+++ + S DT+V++N+P + TWQ LRDKFR+ G++KFAEI+G+ D
Sbjct: 455 YGRSYGGMNNGNNRKTS-----DTIVIRNMPISWTWQTLRDKFRDVGEVKFAEIRGQ-DT 508
Query: 555 GLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
G+VRF E A+ AI +MD +R DG+ +DVTFF
Sbjct: 509 GVVRFAKERDAEVAIKLMDGSRFDGRTVDVTFF 541
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
+ V N+P WQ+L+D FR GD+ F E+ K +G G+V F+ + A+D
Sbjct: 44 IYVSNVPYEYRWQDLKDLFRKEVGDVSFVELFHDENNKPRG-CGIVEFEKAEHVQAALDK 102
Query: 572 MDRTRIDGK 580
M+R I+G+
Sbjct: 103 MNRFDINGR 111
>gi|170053209|ref|XP_001862568.1| myelin expression factor 2 [Culex quinquefasciatus]
gi|167873823|gb|EDS37206.1| myelin expression factor 2 [Culex quinquefasciatus]
Length = 564
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 171/279 (61%), Gaps = 64/279 (22%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VGDV++VE+ +D++ KPRG IVEF+ + V+ A++KM+RF+ GR+LVIKE D G
Sbjct: 67 VGDVSFVELFHDESNKPRGCGIVEFEKAEHVQSALDKMNRFDINGRQLVIKE---DYGNE 123
Query: 115 RNMGG--------------------------------------------GGGVDRDLSAL 130
R+ G GGG + D
Sbjct: 124 RDKYGRVVPKSFRGSGGDGGGGGGGGGGRDNDNRGRRDRDDDRISGRDDGGGFNPDF--- 180
Query: 131 LQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVE 190
NTYGLS +FLE LGI PL ++F+ANLDYKVD KKL++VF+LAGKV+NV+
Sbjct: 181 ---------NTYGLSIKFLEGLGIQGPLHTRIFIANLDYKVDAKKLKQVFKLAGKVQNVD 231
Query: 191 IALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPV-RLPE 249
+++DKDG SRGF +E+DHPVEAVQ+ISM + Q LF+RR+TVR+DRV ++ G + RLPE
Sbjct: 232 LSVDKDGNSRGFAVIEYDHPVEAVQAISMFDRQMLFDRRMTVRLDRVPEK--GELNRLPE 289
Query: 250 GLKSIGMGLGANGAPLQDVANWL--LQEKVQKLSLIISN 286
GLK IG+GLG NG PL+DVA L LQ+ Q L+ I N
Sbjct: 290 GLKGIGIGLGPNGEPLKDVARNLPSLQQNNQVLNNSIQN 328
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
DT++++N+P TWQ LRDKFR+ G++KFAEI+G+ D G+VRF E A+ AI +MD +R
Sbjct: 495 DTIIIRNMPSAWTWQTLRDKFRDVGEVKFAEIRGQ-DTGVVRFAKERDAEVAIKIMDGSR 553
Query: 577 IDGKIIDVTFF 587
DG+ +DVT+F
Sbjct: 554 FDGRTVDVTYF 564
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
+ V N+P WQ+L+D FR GD+ F E+ K +G G+V F+ + A+D
Sbjct: 45 IYVSNVPYEYRWQDLKDLFRKEVGDVSFVELFHDESNKPRG-CGIVEFEKAEHVQSALDK 103
Query: 572 MDRTRIDGK 580
M+R I+G+
Sbjct: 104 MNRFDINGR 112
>gi|195453463|ref|XP_002073799.1| GK14301 [Drosophila willistoni]
gi|194169884|gb|EDW84785.1| GK14301 [Drosophila willistoni]
Length = 652
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 167/260 (64%), Gaps = 46/260 (17%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG + YV++ +D++GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+KE D G +
Sbjct: 87 VGSIEYVQLFHDESGKARGCGIVEFKDPENVQKAMEKMNRYEVNGRELVVKE---DHGEQ 143
Query: 115 RNMGGG--------------------------------GGVDRDLSALLQNNSSKF---- 138
R+ G G RD L N+
Sbjct: 144 RDQYGRIVRDGAGGGGGGNGGGGGGGGGGRDLMDDRDRGFSRRDDDRLSGRNNFNMMSND 203
Query: 139 ------GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA 192
N YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++++++
Sbjct: 204 YNNSSNYNLYGLSSSFLESLGISGPLHNKVFVANLDYKVDSKKLKQVFKLAGKVQSMDLS 263
Query: 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
LDK+G SRGF +E+DHPVEAVQ+ISML+ Q L++RR+TVR+DR+ D+ +G ++LPEGL
Sbjct: 264 LDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLYDRRMTVRLDRIPDKSEG-LKLPEGLG 322
Query: 253 SIGMGLGANGAPLQDVANWL 272
+G+GLG NG PL+DVA+ L
Sbjct: 323 GVGIGLGPNGEPLKDVAHNL 342
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 62 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENV 117
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 118 QKAMEKMNRYEVNGRELVVKEDHGEQR 144
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 65 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARG-CGIVEFKDPENVQKAMEK 123
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 124 MNRYEVNGR 132
>gi|350398514|ref|XP_003485216.1| PREDICTED: LOW QUALITY PROTEIN: myelin expression factor 2-like
[Bombus impatiens]
Length = 518
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 153/243 (62%), Gaps = 27/243 (11%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK------- 105
+ V V +VE+ D+ K RG IVEF+ D V+ AV KMHR++ K V +
Sbjct: 70 TEVXKVAHVELFTDENDKVRGCGIVEFEDSDSVKIAVEKMHRYDNKEDFDVERDKYGWLA 129
Query: 106 -----EAVEDK----------GGRRNMGGGGGVDRDLSALLQNNS----SKFGNTYGLSP 146
E V D GGR+NM G SKFGNTYGL
Sbjct: 130 TARNNERVHDDRFRDPPRPQGGGRQNMNAPAGGGDGGGCGGGGGDGGGDSKFGNTYGLRT 189
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
QFLESL IN PL+ +VFVANLDYKVDE+KL EVF+LAGKV +VE+ DKDGKSRGFG +E
Sbjct: 190 QFLESLDINGPLVTRVFVANLDYKVDEQKLLEVFKLAGKVLHVELEKDKDGKSRGFGVIE 249
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQ 266
+DHPVE+VQ+ISML+NQ L++RR+TV++DR A+ D P +LPEGLK IG GLG +G L
Sbjct: 250 YDHPVESVQAISMLHNQQLYDRRMTVKLDR-ANEPDMPPKLPEGLKGIGKGLGPDGTRLI 308
Query: 267 DVA 269
DVA
Sbjct: 309 DVA 311
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 30/209 (14%)
Query: 381 LGGAANDLTSNLTSTLT-SLAAANQNTAYPLNQ-LSSQSGLGQSNILSGMAAYSQGMQSQ 438
G N++ L LT S AAA Q T+ LN ++++ +N G+ + +
Sbjct: 338 FGFGLNNVPGQLAFVLTNSNAAALQXTSSLLNSSVTNELASNFNNFGVGVGGFDRNNVFD 397
Query: 439 TSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDYGGGSGQASIQSGGYGNP 498
S+ + G N + R+ G ++ GG G A + G G
Sbjct: 398 GSNFAGGRNF--------------------DGRFNRGDSDCVPGGDGGFARNEDEGRGGN 437
Query: 499 RAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVR 558
R +R M+ D ++++NLPP TWQ L+DKF++ G++K AE+ G G + +V+
Sbjct: 438 RQNTYGSRPMS-------DIILIRNLPPNTTWQMLKDKFQDVGEVKLAEMAGAG-VAIVQ 489
Query: 559 FDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
F S+W A+RA+ MM+R+RIDG+ IDV +
Sbjct: 490 FASKWDAERAVSMMNRSRIDGRTIDVCLY 518
>gi|427782001|gb|JAA56452.1| Putative rna-binding protein hnrnp-m [Rhipicephalus pulchellus]
Length = 482
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/265 (47%), Positives = 163/265 (61%), Gaps = 19/265 (7%)
Query: 29 APLEVPVVMDLIQGDASLYQISHL--STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVR 86
AP + V + + D I L VGDV+YVE+ D+ GK RG IVE + V
Sbjct: 49 APSDRRVYVANVPFDCKWTDIKDLFRDKVGDVSYVELFEDENGKFRGCGIVELKDKASVP 108
Query: 87 KAVNKMHRFETKGRKLVIKEAVE---DKGGRRNMGGGGGVDRDLSALLQNNSSKFG---- 139
KA+ +HR+E KGR LV+KE + D+ GR G G DR + ++
Sbjct: 109 KAIEVLHRYEMKGRFLVVKEDFDVERDRFGRPIPRGRSGGDRMMDDRGRDGDRDGYGRGG 168
Query: 140 --------NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEI 191
NTYGLSPQFL+SLGI PL N+VFVANLDYKV KKL+EVFR+AG+V NV++
Sbjct: 169 GGGGGVGFNTYGLSPQFLDSLGIVGPLSNRVFVANLDYKVTAKKLQEVFRIAGRVSNVDL 228
Query: 192 ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDG--PVRLPE 249
DK+G S+G G VEF+HP+EAVQ+ISMLN Q L+ R ++VRMD+ + LDG P +LP
Sbjct: 229 RTDKEGNSKGHGIVEFEHPIEAVQAISMLNGQKLYNRAMSVRMDKYNEDLDGGLPSKLPT 288
Query: 250 GLKSIGMGLGANGAPLQDVANWLLQ 274
GL+ IG GLGA G PLQ A + Q
Sbjct: 289 GLQGIGKGLGAGGNPLQMTAAQMAQ 313
>gi|321464133|gb|EFX75143.1| hypothetical protein DAPPUDRAFT_323682 [Daphnia pulex]
Length = 649
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 115/142 (80%), Gaps = 3/142 (2%)
Query: 130 LLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189
L +S+++ NTYGLSPQFL+SLGI PLI+++FVANLDYKVD+ KLREVFRLAGKV
Sbjct: 245 LTSPSSTRWSNTYGLSPQFLDSLGIPGPLIDRIFVANLDYKVDDAKLREVFRLAGKVVVA 304
Query: 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGP---VR 246
E+ D+DG+SRGFG ++ HPVEAVQ+ISM NNQ L++RR+TVRMDR A+RL+
Sbjct: 305 EVVKDRDGRSRGFGVLQMSHPVEAVQAISMFNNQMLYDRRMTVRMDRDAERLESQSSRSH 364
Query: 247 LPEGLKSIGMGLGANGAPLQDV 268
LPEGL+SIGMGLG+ G PL+D+
Sbjct: 365 LPEGLRSIGMGLGSRGDPLRDL 386
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 23/234 (9%)
Query: 366 PPPQPSLGNLGLNLGLGGAANDLTSNLTSTLTSLAAANQNTA-YPLNQLSSQSGLG---- 420
P + G LG +GG + L S ++ + N + Y ++ L S +G
Sbjct: 427 PAHETGFGQLGGTAAMGGQMERSVAGLPSMGSNQSMHNLSMGDYRMSNLGSGYNIGFESG 486
Query: 421 QSNILSGMAAYSQGMQS--QTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNE 478
S L+G+A S QT + S+ ++ SA DY R S YG++R N+
Sbjct: 487 SSMSLNGIADRSNPAPYGYQTENFSAKGSL----SASVHDYERRES--YGSNR----TNQ 536
Query: 479 M-----DYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQEL 533
M DY + ++ P S+ + S+ DT++V NLPP +WQ+L
Sbjct: 537 MTRSKQDYPTSTEYDAVSRMSARGPSPPTSSSLAPTSDSSKLSDTILVTNLPPNCSWQDL 596
Query: 534 RDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
RD F GD+ FA+I+ KG GLVRF SE A+RA M++RTR++G I+V F+
Sbjct: 597 RDTFCEVGDVLFADIRAKG-TGLVRFSSERDAQRACSMLNRTRMEGYTIEVNFY 649
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
S VG+V++VE+ D+ GKPRGS IVEF+ + R A+ KM+RFE KGR+L++KE
Sbjct: 119 SEVGEVSFVELFEDEYGKPRGSGIVEFEKLEHARIALEKMNRFELKGRRLIVKE 172
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+V ++N+ Y+ + L+++FR G+V VE+ D+ GK RG G VEF+ A ++
Sbjct: 98 RVHISNIPYEYRWQDLKDLFRSEVGEVSFVELFEDEYGKPRGSGIVEFEKLEHARIALEK 157
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLK-SIGMGLGANGAPLQDVANWL 272
+N L RR+ V+ R+ L V E + G A+ + Q+ N L
Sbjct: 158 MNRFELKGRRLIVKEVRIPYDLHSSVFNHEACDVDVERGADASASSRQESRNHL 211
>gi|324501426|gb|ADY40636.1| Myelin expression factor 2 [Ascaris suum]
Length = 426
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 145/226 (64%), Gaps = 11/226 (4%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V +VEIL D GK +G+A+VEF+ D V++ V+ +HR+ R L KE + R
Sbjct: 51 GEVNFVEILEDRNGKSKGAAVVEFREKDSVQRCVDALHRYPLNDRMLSAKEIRDPIAFFR 110
Query: 116 NMGGGGGVD--RDLSALLQNNSSKFG----NTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ GVD L Q ++ +TYGLSP FL L I+ PL N+VF++NL Y
Sbjct: 111 KVKDDTGVDFLNGLHGRSQTDTRPLREESFDTYGLSPAFLRQLNIDGPLTNRVFISNLPY 170
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
V ++ ++F LAGKV V++ LDK+G+S+G V+F HP+EAVQ+ISMLNNQ +F+R
Sbjct: 171 NVQSGRVHDIFALAGKVTWVDLQLDKEGRSKGMAVVQFSHPIEAVQAISMLNNQRVFDRL 230
Query: 230 ITVRMDR---VADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWL 272
I V+MDR + +R +G LP GL+ IGMGLGANGAPL DV++ +
Sbjct: 231 INVKMDRFDPIDERREG--ELPIGLRGIGMGLGANGAPLSDVSSII 274
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAK 566
S +S + R ++++KNLP TWQ +RD+ + G ++ E+ G V F A+
Sbjct: 347 SYGSTSFVSR-SIIIKNLPLDYTWQIVRDRVQQFGRVELTEMIAPG-CAKVSFAVASDAE 404
Query: 567 RAIDMMDRTRIDGKIIDVTFF 587
RA + T ++G+ I V F
Sbjct: 405 RARKALQNTTVEGRTIGVEFL 425
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V+++N+ Y + +L+++ R AG+V VEI D++GKS+G VEF + + L
Sbjct: 28 VYISNIPYDIRWMELKDLIREKAGEVNFVEILEDRNGKSKGAAVVEFREKDSVQRCVDAL 87
Query: 221 NNQNLFERRITVRMDR 236
+ L +R ++ + R
Sbjct: 88 HRYPLNDRMLSAKEIR 103
>gi|170573243|ref|XP_001892396.1| hypothetical protein [Brugia malayi]
gi|158602087|gb|EDP38775.1| conserved hypothetical protein [Brugia malayi]
Length = 509
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 141/225 (62%), Gaps = 14/225 (6%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE--------- 106
G+V +VE+L D GK +G+A+VEF+ + V++ V+ +HR+ R L KE
Sbjct: 137 GEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDALHRYPMNDRLLTAKEIRDPVAFFR 196
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
V++ G + G G S +N + TYGLSP FL L I PL N+VFV+N
Sbjct: 197 KVKEDTGVDFLNGLHGGTATASLDTRNRQEEQFETYGLSPAFLRQLHITGPLTNRVFVSN 256
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y V ++ + F LAGKV V++ LDK+G+S+G V+F HP+EAVQ+ISMLNNQ +F
Sbjct: 257 LPYNVQSGRVTDYFSLAGKVTWVDLQLDKEGRSKGMAVVQFTHPIEAVQAISMLNNQRVF 316
Query: 227 ERRITVRMDR---VADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
+R+I V+MD+ + DR +G LP GL+ +GMGLGANGAPL DV
Sbjct: 317 DRQINVKMDKFDPIDDRKEG--ELPVGLRGVGMGLGANGAPLGDV 359
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++++KNLP TWQ +RD+ + G + E+ G V F A+RA + T +
Sbjct: 440 SIIIKNLPLDYTWQIVRDRVQQFGPVDLTEMIAPG-CAKVTFTVASDAERARKSLQNTTV 498
Query: 578 DGKIIDVTFF 587
+G++I V F
Sbjct: 499 EGRVIGVEFL 508
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V++AN+ Y V +L+++ R AG+V VE+ D+ GKS+G VEF + + L
Sbjct: 114 VYIANIPYDVRWMELKDLVREKAGEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDAL 173
Query: 221 NNQNLFERRITVRMDR 236
+ + +R +T + R
Sbjct: 174 HRYPMNDRLLTAKEIR 189
>gi|393908086|gb|EFO17232.2| hypothetical protein LOAG_11268 [Loa loa]
Length = 512
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 142/226 (62%), Gaps = 16/226 (7%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V +VE+L D GK +G+A+VEF+ + V++ V+ +HR+ R L KE + R
Sbjct: 140 GEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDALHRYPMNDRLLTAKEIRDPVAFFR 199
Query: 116 NMGGGGGVDR-------DLSALLQNNS---SKFGNTYGLSPQFLESLGINCPLINKVFVA 165
+ GVD +A L S +F TYGLSP FL L I PL N+VFV+
Sbjct: 200 KVKEDTGVDFLNGLHGGTAAASLDTRSRQEEQF-ETYGLSPAFLRQLHITGPLTNRVFVS 258
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NL Y V ++ + F LAGKV V++ LDK+G+S+G V+F HP+EAVQ+ISMLNNQ +
Sbjct: 259 NLPYNVQSGRVTDYFSLAGKVTWVDLQLDKEGRSKGMAVVQFTHPIEAVQAISMLNNQRV 318
Query: 226 FERRITVRMDR---VADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
F+R+I V+MD+ + DR +G LP GL+ +GMGLGANGAPL DV
Sbjct: 319 FDRQINVKMDKFDPIDDRKEG--ELPVGLRGVGMGLGANGAPLGDV 362
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++++KNLP TWQ +RD+ + G + E+ G V F A+RA + T +
Sbjct: 443 SIIIKNLPLDYTWQIVRDRVQQFGPVDLTEMIAPG-CAKVTFAVAADAERARKSLQNTTV 501
Query: 578 DGKIIDVTFF 587
+G++I V F
Sbjct: 502 EGRVIGVEFL 511
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V++AN+ Y V +L+++ R AG+V VE+ D+ GKS+G VEF + + L
Sbjct: 117 VYIANIPYDVRWMELKDLVREKAGEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDAL 176
Query: 221 NNQNLFERRITVRMDR 236
+ + +R +T + R
Sbjct: 177 HRYPMNDRLLTAKEIR 192
>gi|312091038|ref|XP_003146838.1| hypothetical protein LOAG_11268 [Loa loa]
Length = 532
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 142/226 (62%), Gaps = 16/226 (7%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V +VE+L D GK +G+A+VEF+ + V++ V+ +HR+ R L KE + R
Sbjct: 160 GEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDALHRYPMNDRLLTAKEIRDPVAFFR 219
Query: 116 NMGGGGGVDR-------DLSALLQNNS---SKFGNTYGLSPQFLESLGINCPLINKVFVA 165
+ GVD +A L S +F TYGLSP FL L I PL N+VFV+
Sbjct: 220 KVKEDTGVDFLNGLHGGTAAASLDTRSRQEEQF-ETYGLSPAFLRQLHITGPLTNRVFVS 278
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NL Y V ++ + F LAGKV V++ LDK+G+S+G V+F HP+EAVQ+ISMLNNQ +
Sbjct: 279 NLPYNVQSGRVTDYFSLAGKVTWVDLQLDKEGRSKGMAVVQFTHPIEAVQAISMLNNQRV 338
Query: 226 FERRITVRMDR---VADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
F+R+I V+MD+ + DR +G LP GL+ +GMGLGANGAPL DV
Sbjct: 339 FDRQINVKMDKFDPIDDRKEG--ELPVGLRGVGMGLGANGAPLGDV 382
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++++KNLP TWQ +RD+ + G + E+ G V F A+RA + T +
Sbjct: 463 SIIIKNLPLDYTWQIVRDRVQQFGPVDLTEMIAPG-CAKVTFAVAADAERARKSLQNTTV 521
Query: 578 DGKIIDVTFF 587
+G++I V F
Sbjct: 522 EGRVIGVEFL 531
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V++AN+ Y V +L+++ R AG+V VE+ D+ GKS+G VEF + + L
Sbjct: 137 VYIANIPYDVRWMELKDLVREKAGEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDAL 196
Query: 221 NNQNLFERRITVR 233
+ + +R +T +
Sbjct: 197 HRYPMNDRLLTAK 209
>gi|391344609|ref|XP_003746588.1| PREDICTED: myelin expression factor 2-like [Metaseiulus
occidentalis]
Length = 416
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 156/257 (60%), Gaps = 10/257 (3%)
Query: 14 IAHQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHL--STVGD--VTYVEILNDDTG 69
+AH+D I+ AP E V + I D ++ L G+ V++V D G
Sbjct: 1 MAHRDRSR-SPIQLRAPCERRVYVANIPFDMKWTELKDLFKRECGENSVSFVRYFEDTDG 59
Query: 70 KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSA 129
K RG IVEF+ + +KA+ K+HRFE GR LV+KE + + R + G RD +
Sbjct: 60 KFRGCGIVEFKDSEATKKAIEKLHRFELNGRFLVVKEDYDVE--RDSTGRVRSPQRDYGS 117
Query: 130 LLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189
+ S NTYGLSP+FL+SLGI+ PL NK+F+ANLDYKV L+ +F+L G+V +V
Sbjct: 118 NHVGSVSGSFNTYGLSPKFLDSLGIDLPLTNKLFIANLDYKVTRGDLKRLFKLCGRVLDV 177
Query: 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPE 249
E+ +DKDG S+G TVE DHP+EAVQ+ISMLN Q R I +RMDR D D ++LP
Sbjct: 178 ELYVDKDGNSKGNATVELDHPIEAVQAISMLNRQIFHGRPIAIRMDR-KDSDD--LKLPP 234
Query: 250 GLKSIGMGLGANGAPLQ 266
GL+ +G GLG GAPL+
Sbjct: 235 GLEGVGKGLGPGGAPLR 251
>gi|340714969|ref|XP_003395994.1| PREDICTED: LOW QUALITY PROTEIN: myelin expression factor 2-like
[Bombus terrestris]
Length = 588
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 143/244 (58%), Gaps = 31/244 (12%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112
+ VG V +VE+ + K R IVEF+ D V+ V KMHR + K ++ DK
Sbjct: 113 TEVGKVAHVELFTGENDKARARGIVEFEDSDSVKITVEKMHRSDIKKVDFDVER---DKY 169
Query: 113 GRRNMGGGGGVDRDLSAL---------LQNNSS------------------KFGNTYGLS 145
R DRD + QN ++ K GNTYGL
Sbjct: 170 DRLATACNNERDRDNRFIDPPKSQDDRRQNMNAPADAWDGNGDSGDGGGDRKLGNTYGLD 229
Query: 146 PQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTV 205
+FL+ LGIN PL+ +VFV NLDY VDE KL EVF+LAGKV VE+A DK GKSRGFG V
Sbjct: 230 TRFLKFLGINEPLVTRVFVTNLDYAVDEHKLIEVFKLAGKVLYVELARDKRGKSRGFGMV 289
Query: 206 EFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPL 265
E+DHPVE+VQ+ISML+NQ L++RR+ VR+D+V + D P +LPE L+ IG GLG G+ L
Sbjct: 290 EYDHPVESVQAISMLHNQKLYDRRMFVRLDKV-NEPDVPQKLPEELQGIGRGLGTGGSRL 348
Query: 266 QDVA 269
DVA
Sbjct: 349 IDVA 352
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
D++++KNLP TWQ L+++F+N G++KF I+ G G+V+F SEW A RA+ +M+R+
Sbjct: 519 DSILIKNLPSNATWQMLKNEFQNVGEVKFVAIQRTG-TGIVQFVSEWDAVRAMCIMNRSC 577
Query: 577 IDGKIIDVTFF 587
IDG+ IDV +
Sbjct: 578 IDGRTIDVCLY 588
>gi|342326470|gb|AEL23150.1| myelin expression factor 2 [Cherax quadricarinatus]
Length = 163
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 117/166 (70%), Gaps = 17/166 (10%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-------VEDKGGRR 115
+ ND+ +PRG A++EF+S DLV KAV+ MHR+E KGRKLV+KE+ D+ R
Sbjct: 1 MFNDENNRPRGCAVIEFESVDLVSKAVDTMHRYELKGRKLVVKESGPSRQDFDSDRDRHR 60
Query: 116 -----NMGGGGGVDR--DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+M GG R DL N K+GNTYGLS FLESLGI PL++KVFVANLD
Sbjct: 61 SLMKSDMRGGRDFTRGADLGGPPGN---KYGNTYGLSTVFLESLGITGPLVSKVFVANLD 117
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
YKVD+K L++VF++A KV +VEI+ D+DGKSRGFG VEF+HPVEAV
Sbjct: 118 YKVDDKMLKDVFKIASKVSSVEISKDQDGKSRGFGVVEFEHPVEAV 163
>gi|195572270|ref|XP_002104119.1| GD20792 [Drosophila simulans]
gi|194200046|gb|EDX13622.1| GD20792 [Drosophila simulans]
Length = 634
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 114/131 (87%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 216 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 275
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL +G+GLG+N
Sbjct: 276 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLGGVGIGLGSN 334
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 335 GEPLRDVAHNL 345
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 56 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 111
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 112 QKALEKMNRYEVNGRELVVKEDHGEQR 138
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARG-CGIVEFKDPENVQKALEK 117
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 118 MNRYEVNGR 126
>gi|195330400|ref|XP_002031892.1| GM26253 [Drosophila sechellia]
gi|194120835|gb|EDW42878.1| GM26253 [Drosophila sechellia]
Length = 634
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 114/131 (87%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 216 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 275
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL +G+GLG+N
Sbjct: 276 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLGGVGIGLGSN 334
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 335 GEPLRDVAHNL 345
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 56 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 111
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 112 QKALEKMNRYEVNGRELVVKEDHGEQR 138
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARG-CGIVEFKDPENVQKALEK 117
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 118 MNRYEVNGR 126
>gi|195499439|ref|XP_002096949.1| GE24772 [Drosophila yakuba]
gi|194183050|gb|EDW96661.1| GE24772 [Drosophila yakuba]
Length = 638
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 117/269 (43%), Positives = 161/269 (59%), Gaps = 34/269 (12%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 220 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 279
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL +G+GLG N
Sbjct: 280 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLGGVGIGLGPN 338
Query: 262 GAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTD 321
G PL+DVA+ +L ++ ++L Q + ++++V+ A+
Sbjct: 339 GEPLRDVAH----------NLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNL 388
Query: 322 STNAEKDKIGNLPNMNTNPTPTASVSTPA-----------------ALAAAVTALTQAQ- 363
N GN + P+P A V P+ +L AAV Q
Sbjct: 389 LNNLTGVMFGN--HAAVQPSPVAPVQKPSLGNNSGTGGLNLNNLNPSLLAAVVGNLGNQG 446
Query: 364 ---QPPPPQPSLGNLGLNLGLGGAANDLT 389
P SL NLGLNLG G ++LT
Sbjct: 447 GNLSNPLLTSSLSNLGLNLGNSGNDDNLT 475
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 62 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 117
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 118 QKALEKMNRYEVNGRELVVKEDHGEQR 144
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 65 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARG-CGIVEFKDPENVQKALEK 123
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 124 MNRYEVNGR 132
>gi|198454024|ref|XP_001359437.2| GA21738 [Drosophila pseudoobscura pseudoobscura]
gi|198132617|gb|EAL28583.2| GA21738 [Drosophila pseudoobscura pseudoobscura]
Length = 652
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 225 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 284
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G V+LPEGL +G+GLG N
Sbjct: 285 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKGEG-VKLPEGLGGVGIGLGPN 343
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 344 GEPLKDVAHNL 354
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 13/116 (11%)
Query: 472 YGSGGNEMDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQ 531
Y SG N +GGGS + SG GN AG S +S DT+++KN+P + TWQ
Sbjct: 550 YNSGNNLDIFGGGSNVGNANSGA-GN--AGAGSRKS---------DTIIIKNVPMSCTWQ 597
Query: 532 ELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
LRDKFR GD+KFAEI+G D+G+VRF E A+ AI +MD +R+DG+ I VT+F
Sbjct: 598 TLRDKFREIGDVKFAEIRGN-DVGVVRFFKERDAELAIALMDGSRLDGRNIKVTYF 652
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 64 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENV 119
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 120 QKAMEKMNRYEVNGRELVVKEDHGEQR 146
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 67 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARG-CGIVEFKDPENVQKAMEK 125
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 126 MNRYEVNGR 134
>gi|194746657|ref|XP_001955793.1| GF16058 [Drosophila ananassae]
gi|190628830|gb|EDV44354.1| GF16058 [Drosophila ananassae]
Length = 633
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 218 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 277
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G V+LPEGL +G+GLG N
Sbjct: 278 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKGEG-VKLPEGLGGVGIGLGPN 336
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 337 GEPLKDVAHNL 347
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG + YV++ +D++GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+K ED G +
Sbjct: 82 VGSIEYVQLFHDESGKARGCGIVEFKDPENVQKAMEKMNRYEVNGRELVVK---EDHGEQ 138
Query: 115 RNMGG 119
R+ G
Sbjct: 139 RDQYG 143
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 57 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENV 112
Query: 214 VQSISMLNNQNLFERRITVRMD 235
+++ +N + R + V+ D
Sbjct: 113 QKAMEKMNRYEVNGRELVVKED 134
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 60 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARG-CGIVEFKDPENVQKAMEK 118
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 119 MNRYEVNGR 127
>gi|24645384|ref|NP_649899.1| rumpelstiltskin, isoform A [Drosophila melanogaster]
gi|7299190|gb|AAF54387.1| rumpelstiltskin, isoform A [Drosophila melanogaster]
Length = 632
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 214 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 273
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL +G+GLG N
Sbjct: 274 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLGGVGIGLGPN 332
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 333 GEPLRDVAHNL 343
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 56 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 111
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 112 QKALEKMNRYEVNGRELVVKEDHGEQR 138
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARG-CGIVEFKDPENVQKALEK 117
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 118 MNRYEVNGR 126
>gi|194903140|ref|XP_001980817.1| GG17367 [Drosophila erecta]
gi|190652520|gb|EDV49775.1| GG17367 [Drosophila erecta]
Length = 638
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 220 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 279
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL +G+GLG N
Sbjct: 280 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLGGVGIGLGPN 338
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 339 GEPLRDVAHNL 349
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 61 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 116
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 117 QKALEKMNRYEVNGRELVVKEDHGEQR 143
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 64 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARG-CGIVEFKDPENVQKALEK 122
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 123 MNRYEVNGR 131
>gi|195152720|ref|XP_002017284.1| GL22228 [Drosophila persimilis]
gi|194112341|gb|EDW34384.1| GL22228 [Drosophila persimilis]
Length = 592
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 113/131 (86%), Gaps = 1/131 (0%)
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
YGLS FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SRG
Sbjct: 225 YGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRG 284
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
F +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G V+LPEGL +G+GLG N
Sbjct: 285 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKGEG-VKLPEGLGGVGIGLGPN 343
Query: 262 GAPLQDVANWL 272
G PL+DVA+ L
Sbjct: 344 GEPLKDVAHNL 354
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 13/116 (11%)
Query: 472 YGSGGNEMDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQ 531
Y SG N +GGGS + SG GN AG S +S DT+++KN+P + TWQ
Sbjct: 490 YNSGNNLDIFGGGSNVGNANSGA-GN--AGAGSRKS---------DTIIIKNVPMSCTWQ 537
Query: 532 ELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587
LRDKFR GD+KFAEI+G D+G+VRF E A+ AI +MD +R+DG+ I VT+F
Sbjct: 538 TLRDKFREIGDVKFAEIRGN-DVGVVRFFKERDAELAIALMDGSRLDGRNIKVTYF 592
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 64 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENV 119
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N + R + V+ D R
Sbjct: 120 QKAMEKMNRYEVNGRELVVKEDHGEQR 146
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 67 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARG-CGIVEFKDPENVQKAMEK 125
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 126 MNRYEVNGR 134
>gi|17505699|ref|NP_492677.1| Protein C25A1.4 [Caenorhabditis elegans]
gi|3874432|emb|CAB02757.1| Protein C25A1.4 [Caenorhabditis elegans]
Length = 454
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 135/231 (58%), Gaps = 21/231 (9%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V + E+L D GKP+G+A+VEF++ + K V + +F+ KGR ++ KE + R
Sbjct: 70 GEVAFCELLEDRNGKPKGNAVVEFETREGAEKCVENLQKFDWKGRTIIAKEIRDPNAFFR 129
Query: 116 NMGGGGGVD-----------------RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPL 158
+ G+D +DL + + + +GL+ +FL I PL
Sbjct: 130 TIKTETGIDYLSRTGGGGAGGRGPPPKDLDRPTRTGTY---DLFGLNMEFLRQHNIEPPL 186
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
++F+ANL + V KL EVF +AGK+ ++ +DK+GKS+G +++ HP+EAVQ++S
Sbjct: 187 CERIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVS 246
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPV-RLPEGLKSIGMGLGANGAPLQDV 268
MLN Q LF+R + V+MDR L+ LP GL+SIGMGLGA GAPL +V
Sbjct: 247 MLNGQRLFDRNLVVKMDRFDKELEHKEGGLPRGLESIGMGLGAEGAPLSNV 297
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
++++NLP TWQ +RD+ RN G++ ++ G +RF + A+RA + + +
Sbjct: 386 VIIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPG-AARIRFATFQDAERARAALYGSTV 444
Query: 578 DGKIIDVTF 586
+G++I V +
Sbjct: 445 EGRMISVDY 453
>gi|21429908|gb|AAM50632.1| GH11495p [Drosophila melanogaster]
Length = 430
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 111/132 (84%), Gaps = 1/132 (0%)
Query: 141 TYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR 200
G +FLESLGI+ PL NKVFVANLDYKVD KKL++VF+LAGKV++V+++LDK+G SR
Sbjct: 11 CMGFLLRFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSR 70
Query: 201 GFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGA 260
GF +E+DHPVEAVQ+ISML+ Q LF+RR+TVR+DR+ D+ +G ++LPEGL +G+GLG
Sbjct: 71 GFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG-IKLPEGLGGVGIGLGP 129
Query: 261 NGAPLQDVANWL 272
NG PL+DVA+ L
Sbjct: 130 NGEPLRDVAHNL 141
>gi|347965963|ref|XP_551368.4| AGAP001460-PA [Anopheles gambiae str. PEST]
gi|333470274|gb|EAL38591.4| AGAP001460-PA [Anopheles gambiae str. PEST]
Length = 602
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 113/137 (82%), Gaps = 1/137 (0%)
Query: 133 NNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA 192
N+ S+ NTYGLS +FLE LGI PL K+FVANLDYKVD KKL++VF+LAGK+++++++
Sbjct: 206 NDFSQDYNTYGLSVKFLEGLGIQGPLHTKIFVANLDYKVDAKKLKQVFKLAGKIQSLDLS 265
Query: 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
+DKDG SRGF +E+DHPVEAVQ+ISM + Q LF+RR+TVR+DR+ ++ + RLPEGLK
Sbjct: 266 VDKDGNSRGFAVIEYDHPVEAVQAISMFDRQMLFDRRMTVRLDRLTEKSEMS-RLPEGLK 324
Query: 253 SIGMGLGANGAPLQDVA 269
IG+GLG NG PL+DVA
Sbjct: 325 GIGIGLGPNGEPLKDVA 341
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 15/125 (12%)
Query: 470 SRYGSGGNEM--DYGGGSGQASIQSGG----YGNPRAGLDS-NRSMNQSSNIERDTVVVK 522
S +G+GG+ DY GS S YG G+++ NR M+ DT++++
Sbjct: 486 SGFGNGGSNRGNDYDMGSSNVRNYSTAPNDDYGRNYGGINNGNRKMS-------DTIIIR 538
Query: 523 NLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKII 582
N+P + TWQ LRDKFR+ G++KFAEI+G+ D G+VRF E A AI +MD TR +G+ +
Sbjct: 539 NMPSSWTWQTLRDKFRDVGEVKFAEIRGQ-DTGVVRFAKERDADVAIKLMDGTRFEGRTV 597
Query: 583 DVTFF 587
DVTFF
Sbjct: 598 DVTFF 602
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV---EDK 111
VGDV++VE+ +D+ KPRG IVEF+ P+ V+ A+ KM+R++ GR LVIKE DK
Sbjct: 66 VGDVSFVELFHDENNKPRGCGIVEFEKPEHVQMALEKMNRYDINGRNLVIKEDYGNERDK 125
Query: 112 GGR 114
GR
Sbjct: 126 YGR 128
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++V+N+ Y+ + L+++FR G V VE+ D++ K RG G VEF+ P ++
Sbjct: 43 RIYVSNVPYEYRWQDLKDLFRKEVGDVSFVELFHDENNKPRGCGIVEFEKPEHVQMALEK 102
Query: 220 LNNQNLFERRITVRMD 235
+N ++ R + ++ D
Sbjct: 103 MNRYDINGRNLVIKED 118
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
+ V N+P WQ+L+D FR GD+ F E+ K +G G+V F+ + A++
Sbjct: 44 IYVSNVPYEYRWQDLKDLFRKEVGDVSFVELFHDENNKPRG-CGIVEFEKPEHVQMALEK 102
Query: 572 MDRTRIDGK 580
M+R I+G+
Sbjct: 103 MNRYDINGR 111
>gi|268567041|ref|XP_002639875.1| Hypothetical protein CBG12231 [Caenorhabditis briggsae]
Length = 449
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 20/231 (8%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+VT+ E+L D GKP+G+A+VEF++ + V + +++ KGR ++ KE + R
Sbjct: 69 GEVTFCELLEDGNGKPKGNAVVEFETREGAVNCVANLQKYDWKGRSIIAKEIRDPTAFFR 128
Query: 116 NMGGGGGVDRDLSALL-------------QNNSSKFG--NTYGLSPQFLESLGINCPLIN 160
+ G+D + S+ G + +GL+ +FL I PL
Sbjct: 129 TIKAETGIDYLSRTGGSGAGGGRAHQNKDHDRPSRTGTYDLFGLNMEFLRQHSIEPPLCE 188
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F+ANL + V KL EVF +AGK+ ++ +DK+GK++G +++ HP+EAVQ+ISM
Sbjct: 189 RIFIANLAFNVGTDKLYEVFGMAGKISWMDFRIDKEGKTKGVCVIQYTHPIEAVQAISMF 248
Query: 221 NNQNLFERRITVRMDRV---ADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
N Q LF+R + V+MDR + +G LP GL+SIGMGLGA+GAPL +V
Sbjct: 249 NGQRLFDRNLVVKMDRFEKEPEHKEGG--LPRGLESIGMGLGADGAPLANV 297
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
+V++NLP TWQ +RD+ RN G++ ++ G +RF S A+RA + T +
Sbjct: 381 VIVIRNLPTDYTWQIVRDRVRNFGEVDSVDMMAPG-AARIRFASFQDAERARAALYGTTV 439
Query: 578 DGKIIDVTF 586
+G++I V +
Sbjct: 440 EGRVISVDY 448
>gi|308485084|ref|XP_003104741.1| hypothetical protein CRE_23966 [Caenorhabditis remanei]
gi|308257439|gb|EFP01392.1| hypothetical protein CRE_23966 [Caenorhabditis remanei]
Length = 451
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 26/234 (11%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V + E+L D GKP+G+A+VEF++ + K V + +F+ KGR ++ KE + R
Sbjct: 70 GEVVFCELLEDGNGKPKGNAVVEFETREGAEKCVANLQKFDWKGRSIIAKEIRDPTAFFR 129
Query: 116 NMGGGGGVD------------------RDLSALLQNNSSKFGNTYGLSPQFLESLGINCP 157
+ G+D +DL + + + +GL+ +FL I P
Sbjct: 130 TIKTETGIDYLSRTGGGASGGARAPQSKDLDRPARTGTF---DLFGLNMEFLRQHNIEPP 186
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L ++F+ANL + V KL EVF +AGK+ ++ +D++GK++G +++ HP+EAVQ+I
Sbjct: 187 LCERIFIANLAFNVGTDKLYEVFGMAGKINWMDFRIDREGKTKGVCVIQYTHPIEAVQAI 246
Query: 218 SMLNNQNLFERRITVRMDRV---ADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
SM N Q LF+R + V+MDR + +G LP GL+SIGMGLGA+GAPL +V
Sbjct: 247 SMFNGQRLFDRNLVVKMDRFEKEPEHKEGG--LPRGLESIGMGLGADGAPLANV 298
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 39/164 (23%)
Query: 425 LSGMAAYSQGM--QSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDYG 482
+ G+A + QG+ QS + N + N SA T +S D
Sbjct: 324 VGGVAGFPQGVVDQSNFARNVMTNAPFGNNSASGTSFSS------------------DVF 365
Query: 483 GGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGD 542
GGSG I + G R + ++NLP TWQ +RD+ RN G+
Sbjct: 366 GGSGTGGIVAAGAQPTR------------------VITIRNLPTDYTWQIVRDRVRNFGE 407
Query: 543 IKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
+ ++ G +RF S A+RA + T ++G++I V +
Sbjct: 408 VDTVDMMAPG-AARIRFASFQDAERARAALYGTTVEGRMISVDY 450
>gi|341883772|gb|EGT39707.1| hypothetical protein CAEBREN_32448 [Caenorhabditis brenneri]
Length = 351
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 26/234 (11%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-------- 107
G+V + E+L D GKP+G+A+VEF++ + V+ + +++ KGR ++ KE
Sbjct: 69 GEVVFCELLEDRNGKPKGNAVVEFETREGAENCVSNLQKYDWKGRSIIAKEIRDPTAFFR 128
Query: 108 ----------VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCP 157
+ GG +GG +DL + + + +GL+ +FL I P
Sbjct: 129 TIKTETGIDYLSRTGGNGPVGGRAPQGKDLDRPARTGTF---DLFGLNMEFLRQHNIEPP 185
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L ++F+ANL + V KL EVF +AGK+ ++ +DK+GK++G +++ HP+EAVQ+I
Sbjct: 186 LCERIFIANLAFNVGTDKLYEVFGMAGKISWMDFRIDKEGKTKGVCVIQYTHPIEAVQAI 245
Query: 218 SMLNNQNLFERRITVRMDRVA---DRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
SM N Q LF+R + V+MDR + +G LP GL+SIGMGLGA+GAPL +V
Sbjct: 246 SMFNGQRLFDRNLVVKMDRFEKEPEHKEGG--LPRGLESIGMGLGADGAPLANV 297
>gi|209489332|gb|ACI49105.1| hypothetical protein Cbre_JD13.007 [Caenorhabditis brenneri]
gi|341889181|gb|EGT45116.1| hypothetical protein CAEBREN_19066 [Caenorhabditis brenneri]
Length = 449
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 26/234 (11%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-------- 107
G+V + E+L D GKP+G+A+VEF++ + V+ + +++ KGR ++ KE
Sbjct: 69 GEVVFCELLEDRNGKPKGNAVVEFETREGAENCVSNLQKYDWKGRSIIAKEIRDPTAFFR 128
Query: 108 ----------VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCP 157
+ GG +GG +DL + + + +GL+ +FL I P
Sbjct: 129 TIKTETGIDYLSRTGGNGPVGGRAPQGKDLDRPARTGTF---DLFGLNMEFLRQHNIEPP 185
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L ++F+ANL + V KL EVF +AGK+ ++ +DK+GK++G +++ HP+EAVQ+I
Sbjct: 186 LCERIFIANLAFNVGTDKLYEVFGMAGKISWMDFRIDKEGKTKGVCVIQYTHPIEAVQAI 245
Query: 218 SMLNNQNLFERRITVRMDRVA---DRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
SM N Q LF+R + V+MDR + +G LP GL+SIGMGLGA+GAPL +V
Sbjct: 246 SMFNGQRLFDRNLVVKMDRFEKEPEHKEGG--LPRGLESIGMGLGADGAPLANV 297
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRI 577
VV++NLP TWQ +RD+ RN G++ ++ G G +RF S A+RA + T +
Sbjct: 381 VVVIRNLPNDYTWQIVRDRVRNFGEVDSVDMMGPG-TARIRFASFQDAERARSALYGTTV 439
Query: 578 DGKIIDVTF 586
+G+II+V +
Sbjct: 440 EGRIINVDY 448
>gi|312383574|gb|EFR28614.1| hypothetical protein AND_03262 [Anopheles darlingi]
Length = 533
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 114/143 (79%), Gaps = 1/143 (0%)
Query: 140 NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKS 199
NTYGLS +FLE LGI PL K+FVANLDYKVD KKL++VF++AGK++++++++DKDG S
Sbjct: 135 NTYGLSVKFLEGLGIQGPLHTKIFVANLDYKVDAKKLKQVFKMAGKIQSLDLSVDKDGNS 194
Query: 200 RGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
RGF +E+DHPVEAVQ+ISM + Q L++RR+TVR+DR+ ++ + RLPEGLK IG+GLG
Sbjct: 195 RGFAVIEYDHPVEAVQAISMFDRQILYDRRMTVRLDRLTEKSEMN-RLPEGLKGIGIGLG 253
Query: 260 ANGAPLQDVANWLLQEKVQKLSL 282
NG PL+DV+ L + Q +L
Sbjct: 254 PNGEPLKDVSRNLPSLQQQNTAL 276
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKR 567
MN + DT+V++N+P + TWQ LRDKFR+ G++KFAEI+G+ D G+VRF E A
Sbjct: 455 MNNGNRKTSDTIVIRNMPSSWTWQTLRDKFRDVGEVKFAEIRGQ-DTGVVRFAKERDADV 513
Query: 568 AIDMMDRTRIDGKIIDVTFF 587
AI +MD +R +G+ +DV+FF
Sbjct: 514 AIKLMDGSRFEGRTVDVSFF 533
>gi|339252584|ref|XP_003371515.1| putative RNA recognition [Trichinella spiralis]
gi|316968245|gb|EFV52548.1| putative RNA recognition [Trichinella spiralis]
Length = 695
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 129/227 (56%), Gaps = 19/227 (8%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE----AVEDK 111
GDV+YVE++ GK +G A+VEF+ + +K V MHR K R +V+KE + +
Sbjct: 51 GDVSYVEMIEKGDGKSKGCALVEFKDRETAKKCVENMHRMTVKDRSIVVKEIRVLVTDPE 110
Query: 112 GGRRNMGGGGGVDRDLSALLQNN------SSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
+ + GVD + Q N + T+GLSP FL LGI+ L N+
Sbjct: 111 RFFKRVKEETGVDFFANQSGQKNFPIEEPPKEIFETFGLSPVFLRGLGIHSALSNR---- 166
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
L V KL+EVF LAGKV +V+ LDK GK++ +EF+HP+EAVQ+ISML++Q L
Sbjct: 167 -LPITVGPSKLKEVFSLAGKVLDVDFPLDKTGKTKCVACIEFEHPLEAVQAISMLDSQKL 225
Query: 226 FERRITVRMDRVADRLDG----PVRLPEGLKSIGMGLGANGAPLQDV 268
+++ + VRMD R P LP GL+S+G GLG NG PL ++
Sbjct: 226 YDKMLCVRMDNAVTRKRRESRMPGELPYGLQSVGQGLGLNGVPLVNI 272
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAID 570
T++V+NLP TWQ LRD+ R G+++FA+I G +G +RF S + A +A D
Sbjct: 433 TIIVRNLPLDFTWQSLRDRMRCYGEVEFADIIQPG-VGKIRFKSTFDADKAYD 484
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 504 SNRSMNQSSNIERDTVV-VKNLPPTITWQELRDKFR-NCGDIKFAEIKGKGD-----IGL 556
S R S +I D +V + N+P I W EL+D R GD+ + E+ KGD L
Sbjct: 12 SARRKRSSKDISSDKMVYISNIPYDIRWMELKDIIREKAGDVSYVEMIEKGDGKSKGCAL 71
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
V F TAK+ ++ M R + + I V
Sbjct: 72 VEFKDRETAKKCVENMHRMTVKDRSIVV 99
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V+++N+ Y + +L+++ R AG V VE+ DGKS+G VEF A + + +
Sbjct: 28 VYISNIPYDIRWMELKDIIREKAGDVSYVEMIEKGDGKSKGCALVEFKDRETAKKCVENM 87
Query: 221 NNQNLFERRITVRMDRV 237
+ + +R I V+ RV
Sbjct: 88 HRMTVKDRSIVVKEIRV 104
>gi|327286667|ref|XP_003228051.1| PREDICTED: myelin expression factor 2-like [Anolis carolinensis]
Length = 660
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 121/199 (60%), Gaps = 15/199 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + VRKA++ M++++ GR L IKE + + R
Sbjct: 147 VGEVTYVELFKDAEGKSRGCGVVEFRDEEFVRKAMDTMNKYDLNGRPLNIKEDPDGEHAR 206
Query: 115 RNMGGG-----GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G GG D++ L N N + P+ + +L L + +FVANLD+
Sbjct: 207 RALQRGSGTFSGGHGPDVAPTLMNLPPSIINNPNIPPEIISNLQAG-RLGSTIFVANLDF 265
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ P+EAVQ+ISM N Q LF+R
Sbjct: 266 KVGWKKLKEVFLIAGTVKRADIKEDKDGKSRGMGTVTFEQPIEAVQAISMFNGQFLFDRP 325
Query: 230 ITVRMD---------RVAD 239
+ V+MD RVAD
Sbjct: 326 MHVKMDDKSVPHDDFRVAD 344
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 17/101 (16%)
Query: 501 GLDSNRSMNQ--------SSNIER-----DTVVVKNLPPTITWQELRDKFRNCGDIKFAE 547
GLD N M++ S ER + + V+NLP +TWQ+L++KF CG + FAE
Sbjct: 554 GLDRNIDMDRGFVPGPMGSGTRERVGSKGNQIFVRNLPFDLTWQKLKEKFNQCGHVMFAE 613
Query: 548 IK---GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
IK GK G VRFDS +A++A +M+ +I G+ IDV
Sbjct: 614 IKMENGKSKGCGTVRFDSPESAEKACRVMNGIKISGREIDV 654
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 583 NQIFVRNLPFDLTWQKLKEKFNQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRV 641
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR+A
Sbjct: 642 MNGIKISGREIDVRLDRIA 660
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLVRFDSE 562
+ I R+ V + N+P + WQ ++D R G++ + E+ K +G G+V F E
Sbjct: 116 EKKTINRNRVFISNIPYDMKWQSIKDLMREKVGEVTYVELFKDAEGKSRG-CGVVEFRDE 174
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
++A+D M++ ++G+ +++
Sbjct: 175 EFVRKAMDTMNKYDLNGRPLNI 196
>gi|334314721|ref|XP_003340080.1| PREDICTED: myelin expression factor 2-like [Monodelphis domestica]
Length = 518
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 129 VGEVTYVELFKDSEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 188
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 189 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 247
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV FD +EAVQ+ISM N Q LF+R
Sbjct: 248 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFDQAIEAVQAISMFNGQFLFDRP 307
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 308 MHVKMD 313
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 91 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDSEGKSRG-CG 149
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 150 VVEFKDEEFVKKALETMNKYDLSGRPLNI 178
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 116 NMGGGGGVDRDLSALLQNNSSK-----FG-NTYGLSPQFLESLGINCPLINKVFVANLDY 169
NMGG GG+ R + L + + FG G++ F +S G I +
Sbjct: 396 NMGGFGGISR-MGELYRGGMTSSMERDFGRGDIGMNRGFGDSFG----RIGGAMIGGFAG 450
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ + V V EI ++ +GKS+G GTV FD P A ++ ++N + R
Sbjct: 451 GMGASNMGPVGSGMSHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 509
Query: 230 ITVRMDRVA 238
I VR+DR A
Sbjct: 510 IDVRLDRNA 518
>gi|397523095|ref|XP_003831578.1| PREDICTED: myelin expression factor 2 [Pan paniscus]
Length = 848
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 372 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 431
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 432 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 490
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 491 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 550
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 551 MHVKMD 556
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 771 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 830
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 831 NGIKISGREIDV 842
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 771 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 829
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 830 MNGIKISGREIDVRLDRNA 848
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 334 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 392
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 393 VVEFKDEEFVKKALETMNKYDLSGRPLNI 421
>gi|410961329|ref|XP_003987236.1| PREDICTED: myelin expression factor 2 [Felis catus]
Length = 677
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 204 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 263
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 264 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 322
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 323 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 382
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 383 MHVKMD 388
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 602 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 661
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 662 IKISGREIDV 671
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 600 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 658
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 659 MNGIKISGREIDVRLDRNA 677
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 166 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 224
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 225 VVEFKDEEFVKKALETMNKYDLSGRPLNI 253
>gi|426378992|ref|XP_004056191.1| PREDICTED: myelin expression factor 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 600
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVSDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 584
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 585 IKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|426378990|ref|XP_004056190.1| PREDICTED: myelin expression factor 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 576
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVSDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|395503222|ref|XP_003755969.1| PREDICTED: myelin expression factor 2 [Sarcophilus harrisii]
Length = 606
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 88 VGEVTYVELFKDSEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 147
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 148 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 206
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV FD +EAVQ+ISM N Q LF+R
Sbjct: 207 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFDQAIEAVQAISMFNGQFLFDRP 266
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 267 MHVKMD 272
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 531 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 590
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 591 IKISGREIDV 600
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 529 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 587
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 588 MNGIKISGREIDVRLDRNA 606
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 50 DKNLGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDSEGKSRG-CG 108
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 109 VVEFKDEEFVKKALETMNKYDLSGRPLNI 137
>gi|156120817|ref|NP_001095555.1| myelin expression factor 2 [Bos taurus]
gi|151554686|gb|AAI49930.1| MYEF2 protein [Bos taurus]
gi|296483098|tpg|DAA25213.1| TPA: myelin expression factor 2 [Bos taurus]
Length = 543
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 468 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 527
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 528 IKISGREIDV 537
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 466 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 524
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 525 MNGIKISGREIDVRLDRNA 543
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|7243063|dbj|BAA92579.1| KIAA1341 protein [Homo sapiens]
Length = 620
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 144 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 203
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 204 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 262
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 263 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 322
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 323 MHVKMD 328
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 545 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 604
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 605 IKISGREIDV 614
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 543 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 601
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 602 MNGIKISGREIDVRLDRNA 620
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 106 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 164
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 165 VVEFKDEEFVKKALETMNKYDLSGRPLNI 193
>gi|417402927|gb|JAA48293.1| Putative rna-binding protein hnrnp-m [Desmodus rotundus]
Length = 576
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGSGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|403274633|ref|XP_003929073.1| PREDICTED: myelin expression factor 2 [Saimiri boliviensis
boliviensis]
Length = 669
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 193 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 252
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 253 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 311
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 312 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 371
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 372 MHVKMD 377
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 594 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 653
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 654 IKISGREIDV 663
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 592 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 650
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 651 MNGIKISGREIDVRLDRNA 669
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 155 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 213
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 214 VVEFKDEEFVKKALETMNKYDLSGRPLNI 242
>gi|332844181|ref|XP_001165031.2| PREDICTED: myelin expression factor 2 isoform 1 [Pan troglodytes]
gi|410345085|gb|JAA40635.1| myelin expression factor 2 [Pan troglodytes]
Length = 600
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 582
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 583 NGIKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|402874227|ref|XP_003900944.1| PREDICTED: myelin expression factor 2 [Papio anubis]
Length = 600
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 582
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 583 NGIKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N S + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|296439294|sp|Q9P2K5.3|MYEF2_HUMAN RecName: Full=Myelin expression factor 2; Short=MEF-2;
Short=MyEF-2; AltName: Full=MST156
Length = 600
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 582
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 583 NGIKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGAGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|33620747|ref|NP_057216.2| myelin expression factor 2 [Homo sapiens]
gi|156230143|gb|AAI52421.1| Myelin expression factor 2 [Homo sapiens]
gi|156230747|gb|AAI52452.1| Myelin expression factor 2 [Homo sapiens]
gi|168269820|dbj|BAG10037.1| myelin expression factor 2 [synthetic construct]
gi|189442414|gb|AAI67842.1| Myelin expression factor 2 [synthetic construct]
Length = 600
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 584
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 585 IKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|395822137|ref|XP_003784380.1| PREDICTED: myelin expression factor 2 isoform 3 [Otolemur
garnettii]
Length = 584
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 125 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 184
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 185 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 243
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 244 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 303
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 304 MHVKMD 309
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 509 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 568
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 569 IKISGREIDV 578
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 507 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 565
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 566 MNGIKISGREIDVRLDRNA 584
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 87 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 145
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 146 VVEFKDEEFVKKALETMNKYDLSGRPLNI 174
>gi|119597743|gb|EAW77337.1| myelin expression factor 2, isoform CRA_a [Homo sapiens]
Length = 600
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 582
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 583 NGIKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGAGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|386781800|ref|NP_001248185.1| myelin expression factor 2 [Macaca mulatta]
gi|380813238|gb|AFE78493.1| myelin expression factor 2 [Macaca mulatta]
gi|383408957|gb|AFH27692.1| myelin expression factor 2 [Macaca mulatta]
gi|384943592|gb|AFI35401.1| myelin expression factor 2 [Macaca mulatta]
Length = 600
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 582
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 583 NGIKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N S + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|291403066|ref|XP_002717901.1| PREDICTED: myelin expression factor 2 isoform 4 [Oryctolagus
cuniculus]
Length = 583
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVSDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 508 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 567
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 568 IKISGREIDV 577
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 506 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 564
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 565 MNGIKISGREIDVRLDRNA 583
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N S + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|296213934|ref|XP_002753480.1| PREDICTED: myelin expression factor 2 isoform 2 [Callithrix
jacchus]
Length = 576
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|297696571|ref|XP_002825461.1| PREDICTED: myelin expression factor 2 isoform 2 [Pongo abelii]
Length = 576
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|291403062|ref|XP_002717899.1| PREDICTED: myelin expression factor 2 isoform 2 [Oryctolagus
cuniculus]
Length = 600
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVSDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 584
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 585 IKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N S + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|332844183|ref|XP_510381.3| PREDICTED: myelin expression factor 2 isoform 2 [Pan troglodytes]
Length = 576
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|291403064|ref|XP_002717900.1| PREDICTED: myelin expression factor 2 isoform 3 [Oryctolagus
cuniculus]
Length = 559
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVSDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 484 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 543
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 544 IKISGREIDV 553
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 482 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 540
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 541 MNGIKISGREIDVRLDRNA 559
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N S + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|291403060|ref|XP_002717898.1| PREDICTED: myelin expression factor 2 isoform 1 [Oryctolagus
cuniculus]
Length = 576
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVSDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N S + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|74000608|ref|XP_544669.2| PREDICTED: myelin expression factor 2 [Canis lupus familiaris]
Length = 615
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 142 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 201
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 202 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 260
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 261 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 320
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 321 MHVKMD 326
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 540 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 599
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 600 IKISGREIDV 609
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 538 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 596
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 597 MNGIKISGREIDVRLDRNA 615
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 104 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 162
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 163 VVEFKDEEFVKKALETMNKYDLSGRPLNI 191
>gi|332235471|ref|XP_003266928.1| PREDICTED: myelin expression factor 2 isoform 1 [Nomascus
leucogenys]
Length = 600
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 584
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 585 IKISGREIDV 594
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|395822135|ref|XP_003784379.1| PREDICTED: myelin expression factor 2 isoform 2 [Otolemur
garnettii]
Length = 577
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 125 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 184
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 185 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 243
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 244 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 303
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 304 MHVKMD 309
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 502 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 561
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 562 IKISGREIDV 571
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 500 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 558
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 559 MNGIKISGREIDVRLDRNA 577
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 87 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 145
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 146 VVEFKDEEFVKKALETMNKYDLSGRPLNI 174
>gi|119597744|gb|EAW77338.1| myelin expression factor 2, isoform CRA_b [Homo sapiens]
Length = 576
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGAGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|350578677|ref|XP_003480421.1| PREDICTED: myelin expression factor 2-like isoform 2 [Sus scrofa]
Length = 600
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVITNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 525 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 584
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 585 IKISGREIDV 594
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|350578679|ref|XP_003353420.2| PREDICTED: myelin expression factor 2-like isoform 1 [Sus scrofa]
Length = 576
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVITNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|426234173|ref|XP_004011074.1| PREDICTED: myelin expression factor 2 [Ovis aries]
Length = 588
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 112 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 171
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 172 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 230
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 231 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 290
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 291 MHVKMD 296
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 513 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 572
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 573 IKISGREIDV 582
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 511 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 569
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 570 MNGIKISGREIDVRLDRNA 588
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 74 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 132
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 133 VVEFKDEEFVKKALETMNKYDLSGRPLNI 161
>gi|301764367|ref|XP_002917607.1| PREDICTED: myelin expression factor 2-like [Ailuropoda melanoleuca]
Length = 572
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 99 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 158
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 159 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 217
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 218 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 277
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 278 MHVKMD 283
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 497 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 556
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 557 IKISGREIDV 566
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 495 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 553
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 554 MNGIKISGREIDVRLDRNA 572
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 61 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 119
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 120 VVEFKDEEFVKKALETMNKYDLSGRPLNI 148
>gi|10434915|dbj|BAB14421.1| unnamed protein product [Homo sapiens]
Length = 576
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 115/186 (61%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 R---NMGGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RASQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|441615356|ref|XP_004088291.1| PREDICTED: myelin expression factor 2 isoform 2 [Nomascus
leucogenys]
Length = 576
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 501 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 560
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 561 IKISGREIDV 570
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 557
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 558 MNGIKISGREIDVRLDRNA 576
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>gi|344297020|ref|XP_003420198.1| PREDICTED: myelin expression factor 2-like [Loxodonta africana]
Length = 599
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 123 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 182
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 183 RALQRTGGSFPGGHVPDMGSGLLNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 241
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 242 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 301
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 302 MHVKMD 307
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 524 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 583
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 584 IKISGREIDV 593
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 522 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 580
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 581 MNGIKISGREIDVRLDRNA 599
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 85 DKNSGTGEKKGPNRNRVFISNIPYDVKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 143
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 144 VVEFKDEEFVKKALETMNKYDLSGRPLNI 172
>gi|355705826|gb|AES02446.1| myelin expression factor 2 [Mustela putorius furo]
Length = 381
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 70 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 129
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 130 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 188
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 189 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 248
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 249 MHVKMD 254
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 32 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 90
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 91 VVEFKDEEFVKKALETMNKYDLSGRPLNI 119
>gi|281354335|gb|EFB29919.1| hypothetical protein PANDA_005929 [Ailuropoda melanoleuca]
Length = 546
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 73 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 132
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 133 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 191
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 192 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 251
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 252 MHVKMD 257
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 471 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 530
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 531 IKISGREIDV 540
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 469 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 527
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 528 MNGIKISGREIDVRLDRNA 546
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 35 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 93
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 94 VVEFKDEEFVKKALETMNKYDLSGRPLNI 122
>gi|338716983|ref|XP_001918232.2| PREDICTED: myelin expression factor 2-like [Equus caballus]
Length = 466
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 14 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 73
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 74 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 132
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 133 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 192
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 193 MHVKMD 198
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 391 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 450
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 451 IKISGREIDV 460
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 389 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 447
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 448 MNGIKISGREIDVRLDRNA 466
>gi|395746685|ref|XP_002825460.2| PREDICTED: myelin expression factor 2 isoform 1 [Pongo abelii]
Length = 547
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 472 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 531
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 532 IKISGREIDV 541
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 470 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 528
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 529 MNGIKISGREIDVRLDRNA 547
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRPLNI 120
>gi|395822133|ref|XP_003784378.1| PREDICTED: myelin expression factor 2 isoform 1 [Otolemur
garnettii]
Length = 547
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 472 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 531
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 532 IKISGREIDV 541
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 470 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 528
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 529 MNGIKISGREIDVRLDRNA 547
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRPLNI 120
>gi|390468637|ref|XP_002753479.2| PREDICTED: myelin expression factor 2 isoform 1 [Callithrix
jacchus]
Length = 547
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 472 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 531
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 532 IKISGREIDV 541
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 470 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 528
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 529 MNGIKISGREIDVRLDRNA 547
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRPLNI 120
>gi|33338212|gb|AAQ13703.1|AF190159_1 MSTP156 [Homo sapiens]
Length = 292
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRPLNI 120
>gi|432095750|gb|ELK26797.1| Myelin expression factor 2 [Myotis davidii]
Length = 490
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 14 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 73
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 74 RALQRTGGSFPGGHVPDVGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 132
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 133 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 192
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 193 MHVKMD 198
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 415 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 474
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 475 IKISGREIDV 484
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 413 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 471
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 472 MNGIKISGREIDVRLDRNA 490
>gi|198428195|ref|XP_002131522.1| PREDICTED: similar to myelin gene expression factor 2 [Ciona
intestinalis]
Length = 546
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 122/231 (52%), Gaps = 25/231 (10%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112
S VG+VTYVE+ D GK RG ++EF+ + KAV M+R+E RK+V++E
Sbjct: 81 SKVGEVTYVELFMQDKGKSRGYGVIEFKDKETCHKAVELMNRYEINNRKIVVREDFHGDL 140
Query: 113 GRRNM----------------------GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLE 150
R+N+ GG N G P +
Sbjct: 141 VRKNLERDGHPRPHDMRGPPPMHNMPPPMGGHQGPMPPMPPPMNDMNRGPMGMNKP--MP 198
Query: 151 SLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
+G P+ VFVANLDYKV K++EVF+LAGKV VE+ LDKD KSRG TV ++ P
Sbjct: 199 DMGRPGPMGKTVFVANLDYKVTYSKVKEVFQLAGKVVKVELMLDKDNKSRGMATVTYEEP 258
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
+EA Q+ISMLNNQ L++R + V+MD+ + + + LP GL IG G+ N
Sbjct: 259 MEAAQAISMLNNQRLYDRIMIVKMDKDNSK-EKKLELPSGLAGIGPGISRN 308
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMD 573
TV V+NLP ++TWQ+LRDKF CG + FAEIK GK G VRF++ A+ A+ +
Sbjct: 470 TVFVRNLPYSLTWQKLRDKFTRCGHVLFAEIKMDNGKSRGFGNVRFETVEQAQAAVRYFN 529
Query: 574 RTRIDGKIIDV 584
I+G+ IDV
Sbjct: 530 GAEIEGRNIDV 540
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
P +VFV N+ Y+ + ++++FR G+V VE+ + GKSRG+G +EF +
Sbjct: 56 PPFPRVFVNNIPYEEKWQAIKDLFRSKVGEVTYVELFMQDKGKSRGYGVIEFKDKETCHK 115
Query: 216 SISMLNNQNLFERRITVRMD 235
++ ++N + R+I VR D
Sbjct: 116 AVELMNRYEINNRKIVVRED 135
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL Y + +KLR+ F G V EI +D +GKSRGFG V F+ +A ++ N
Sbjct: 471 VFVRNLPYSLTWQKLRDKFTRCGHVLFAEIKMD-NGKSRGFGNVRFETVEQAQAAVRYFN 529
Query: 222 NQNLFERRITVRMD 235
+ R I V +D
Sbjct: 530 GAEIEGRNIDVHVD 543
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI----KGKGD-IGLVRFDSEWTAKRAIDMM 572
V V N+P WQ ++D FR+ G++ + E+ KGK G++ F + T +A+++M
Sbjct: 61 VFVNNIPYEEKWQAIKDLFRSKVGEVTYVELFMQDKGKSRGYGVIEFKDKETCHKAVELM 120
Query: 573 DRTRIDGKIIDV 584
+R I+ + I V
Sbjct: 121 NRYEINNRKIVV 132
>gi|410912816|ref|XP_003969885.1| PREDICTED: myelin expression factor 2-like [Takifugu rubripes]
Length = 567
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 113/196 (57%), Gaps = 26/196 (13%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++ + GR L IKE + + R
Sbjct: 105 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAIETMNKHDLSGRPLNIKEDPDGEHAR 164
Query: 115 R---------------NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI 159
R +MG GG N N + P+ + +L L
Sbjct: 165 RVLQRLGGGQQGGRGQDMGYGG----------MNIPPSIANNPNIPPEVIHALQAG-RLG 213
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N VFVANLD+KV KKL+EVF +AG V+ ++ DKDGKSRG GTV FD P+EAVQ+ISM
Sbjct: 214 NTVFVANLDFKVGWKKLKEVFGIAGIVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISM 273
Query: 220 LNNQNLFERRITVRMD 235
N Q LF+R++ V+MD
Sbjct: 274 FNGQMLFDRQMHVKMD 289
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 468 GNSRYGSGGNEMDYGGGSGQASIQS-GGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPP 526
GN G+ D G SG +S GGYG+ G S+RS + + + V+NL
Sbjct: 444 GNMSMDRMGSSFDRMGMSGMDMNRSFGGYGH-MGGNMSDRSSGSKAGCQ---IFVRNLSY 499
Query: 527 TITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKII 582
+TWQ+L++KF +CG + FAEIK GK G VRFDS +A++A +M+ ++I+G+ +
Sbjct: 500 DLTWQKLKEKFGHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREV 559
Query: 583 DV 584
DV
Sbjct: 560 DV 561
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 491 QIFVRNLSYDLTWQKLKEKFGHCGQVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRLM 549
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 550 NGSKINGREVDVRIDRNA 567
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLVRFDSEWTAKR 567
R+ V + N+P + WQ ++D R G++ + E+ K +G G+V F E K+
Sbjct: 79 HRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CGVVEFKDEEFVKK 137
Query: 568 AIDMMDRTRIDGKIIDV 584
AI+ M++ + G+ +++
Sbjct: 138 AIETMNKHDLSGRPLNI 154
>gi|351708811|gb|EHB11730.1| Myelin expression factor 2 [Heterocephalus glaber]
Length = 544
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 115/186 (61%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 92 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 151
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG ++ L N N + P+ + +L L + +FVANLD+
Sbjct: 152 RALQRTGGSFPGGHAPEMGTGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 210
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 211 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 270
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 271 MHVKMD 276
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 469 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 528
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 529 IKISGREIDV 538
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 467 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 525
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 526 MNGIKISGREIDVRLDRNA 544
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 54 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 112
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 113 VVEFKDEEFVKKALETMNKYDLSGRPLNI 141
>gi|432851293|ref|XP_004066951.1| PREDICTED: myelin expression factor 2-like [Oryzias latipes]
Length = 571
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 116/195 (59%), Gaps = 25/195 (12%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KAV M++ + GR L IKE + + R
Sbjct: 105 VGEVTYVELFKDAEGKSRGCGVVEFKDDEFVKKAVLTMNKHDLNGRPLNIKEDPDGEHAR 164
Query: 115 R--------------NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
R +MG GG +L + NN + + P+ + L L N
Sbjct: 165 RALQRIGGGQGGRGQDMGPGG---MNLPPSIANNPN-------IPPEVIHGLQAG-RLGN 213
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
VFVANLD+KV KKL+EVF +AG V+ ++ DKDGKSRG GTV FD P+EAVQ+ISM
Sbjct: 214 TVFVANLDFKVGWKKLKEVFGMAGVVKRADVKEDKDGKSRGMGTVTFDQPLEAVQAISMF 273
Query: 221 NNQNLFERRITVRMD 235
N Q LF+R++ V+MD
Sbjct: 274 NGQMLFDRQMHVKMD 288
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKGDIGLVRFDSEWTAKRAIDMMD 573
+ V+NL +TWQ+L++KF +CG + FAEIK KG G VRFDS +A++A +M+
Sbjct: 496 IFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKMENGRSKG-CGTVRFDSPESAEKACRLMN 554
Query: 574 RTRIDGKIIDV 584
T+I+G+ +DV
Sbjct: 555 GTKINGREVDV 565
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +G+S+G GTV FD P A ++ ++
Sbjct: 495 QIFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKME-NGRSKGCGTVRFDSPESAEKACRLM 553
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 554 NGTKINGREVDVRIDRNA 571
>gi|355754329|gb|EHH58294.1| Myelin expression factor 2, partial [Macaca fascicularis]
Length = 549
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK R S +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 73 VGEVTYVELFKDAEGKSRVSGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 132
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 133 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 191
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 192 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 251
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 252 MHVKMD 257
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 474 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 533
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 534 IKISGREIDV 543
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 472 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 530
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 531 MNGIKISGREIDVRLDRNA 549
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI----KGKGDI-GL 556
D N S + R+ V + N+P + WQ ++D R G++ + E+ +GK + G+
Sbjct: 35 DKNSSTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRVSGV 94
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
V F E K+A++ M++ + G+ +++
Sbjct: 95 VEFKDEEFVKKALETMNKYDLSGRPLNI 122
>gi|326926672|ref|XP_003209522.1| PREDICTED: myelin expression factor 2-like [Meleagris gallopavo]
Length = 628
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 114/186 (61%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE E + R
Sbjct: 154 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPEGEHAR 213
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG D++ L N N + P+ + +L L + +FVANLD+
Sbjct: 214 RALQRGGGQFAGGHGPDIAPGLMNLPPSIVNNPNIPPEVISNLQAG-RLGSTIFVANLDF 272
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 273 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 332
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 333 MHVKMD 338
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSE 562
+M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 541 AMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSP 600
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 601 ESAEKACRIMNGIKISGREIDV 622
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 551 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 609
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 610 MNGIKISGREIDVRLDRNA 628
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
+ N + I R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 116 EKNTGSAEKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 174
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 175 VVEFKDEEFVKKALETMNKYDLSGRPLNI 203
>gi|158533978|ref|NP_001013223.2| myelin expression factor 2 [Rattus norvegicus]
Length = 591
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 115/191 (60%), Gaps = 16/191 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGN-TYGLSPQFLESLGINCPLINK---------VFV 164
R + R ++ +++S G+ L P + + I +IN +FV
Sbjct: 175 R------ALQRTGTSFQGSHASDVGSGLVNLPPSIVNNPNIPPEVINNLQAGRLGSTIFV 228
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
ANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 229 ANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQF 288
Query: 225 LFERRITVRMD 235
LF+R + V+MD
Sbjct: 289 LFDRPMHVKMD 299
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 575
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 576 IKISGREIDV 585
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 572
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 573 MNGIKISGREIDVRLDRNA 591
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 77 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 135
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 136 VVEFKDEEFVKKALETMNKYDLSGRPLNI 164
>gi|148673228|gb|EDL05175.1| mCG1028476 [Mus musculus]
Length = 506
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 294 MHVKMD 299
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 77 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 135
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 136 VVEFKDEEFVKKALETMNKYDLSGRPLNI 164
>gi|37360336|dbj|BAC98146.1| mKIAA1341 protein [Mus musculus]
Length = 506
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 133 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 192
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 193 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 251
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 252 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 311
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 312 MHVKMD 317
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 95 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 153
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 154 VVEFKDEEFVKKALETMNKYDLSGRPLNI 182
>gi|71892468|ref|NP_001025455.1| myelin expression factor 2 isoform 2 [Danio rerio]
gi|45758288|gb|AAS76477.1| myelin expression factor 2 [Danio rerio]
Length = 553
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M + + GR L IKE + + R
Sbjct: 105 VGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHAR 164
Query: 115 RNMGG-----GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GGG +D S + N N + + + +L L +FVANLD+
Sbjct: 165 RVLQRSGRMYGGGRGQDSSGI--NIPPSIANNPNIPHEIISALQAG-RLGATIFVANLDF 221
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V ++ DKDGKSRG GTV F+ P+EAVQ+ISM N Q LF+R+
Sbjct: 222 KVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQ 281
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 282 MHVKMD 287
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKGDIGLVRFDSEWTAKRAIDMMD 573
+ V+NL ++WQ+L++KF +CG + +AEIK KG G VRFDS +A++A +M+
Sbjct: 478 IFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGESKG-CGTVRFDSPESAEKAFRLMN 536
Query: 574 RTRIDGKIIDV 584
T+I+G+ +DV
Sbjct: 537 GTKINGREVDV 547
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +G+S+G GTV FD P A ++ ++
Sbjct: 477 QIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGESKGCGTVRFDSPESAEKAFRLM 535
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 536 NGTKINGREVDVRLDRNA 553
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRA 568
R+ V + N+P WQ ++D R G++ + E+ G+ G+V F E K+A
Sbjct: 79 HRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKA 138
Query: 569 IDMMDRTRIDGKIIDV 584
I++M + ++G+ +++
Sbjct: 139 IEVMSKHDLNGRPLNI 154
>gi|244790087|ref|NP_001155889.1| myelin expression factor 2 isoform 1 [Mus musculus]
gi|62900726|sp|Q8C854.1|MYEF2_MOUSE RecName: Full=Myelin expression factor 2; Short=MEF-2; Short=MyEF-2
gi|26339308|dbj|BAC33325.1| unnamed protein product [Mus musculus]
Length = 591
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 294 MHVKMD 299
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 575
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 576 IKISGREIDV 585
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 572
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 573 MNGIKISGREIDVRLDRNA 591
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 77 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 135
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 136 VVEFKDEEFVKKALETMNKYDLSGRPLNI 164
>gi|244790091|ref|NP_034982.2| myelin expression factor 2 isoform 2 [Mus musculus]
Length = 574
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 294 MHVKMD 299
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 499 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 558
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 559 IKISGREIDV 568
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 497 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 555
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 556 MNGIKISGREIDVRLDRNA 574
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 77 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 135
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 136 VVEFKDEEFVKKALETMNKYDLSGRPLNI 164
>gi|449272105|gb|EMC82193.1| Myelin expression factor 2, partial [Columba livia]
Length = 553
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ D V+KA+ M++++ GR L IKE E R
Sbjct: 77 VGEVTYVELFKDAEGKSRGCGVVEFKDEDFVKKALETMNKYDLSGRPLNIKEDPEGDHAR 136
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R M GG D++ + N N + P+ + +L L + +FVANLD+
Sbjct: 137 RAMQRGGGQFPGGHGPDVAPGIMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 195
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 196 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 255
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 256 MHVKMD 261
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A MM+
Sbjct: 478 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRMMNG 537
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 538 IKISGREIDV 547
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ M
Sbjct: 476 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRM 534
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 535 MNGIKISGREIDVRLDRNA 553
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + + I R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 39 DKNAGTGEKTTINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 97
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 98 VVEFKDEDFVKKALETMNKYDLSGRPLNI 126
>gi|61098222|ref|NP_001012786.1| myelin expression factor 2 [Gallus gallus]
gi|53136664|emb|CAG32661.1| hypothetical protein RCJMB04_32c9 [Gallus gallus]
Length = 616
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 114/186 (61%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE E + R
Sbjct: 142 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPEGEHAR 201
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG D++ L N N + P+ + +L L + +FVANLD+
Sbjct: 202 RALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAGR-LGSTIFVANLDF 260
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 261 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 320
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 321 MHVKMD 326
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 507 SMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSE 562
+M + + + + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS
Sbjct: 529 AMKERLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSP 588
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
+A++A +M+ +I G+ IDV
Sbjct: 589 ESAEKACRIMNGIKISGREIDV 610
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 539 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 597
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 598 MNGIKISGREIDVRLDRNA 616
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLVRFDSE 562
+ I R+ V + N+P + WQ ++D R G++ + E+ K +G G+V F E
Sbjct: 111 EKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CGVVEFKDE 169
Query: 563 WTAKRAIDMMDRTRIDGKIIDV 584
K+A++ M++ + G+ +++
Sbjct: 170 EFVKKALETMNKYDLSGRPLNI 191
>gi|82658280|ref|NP_001032500.1| myelin expression factor 2 isoform 1 [Danio rerio]
gi|81294244|gb|AAI08002.1| Myelin expression factor 2 [Danio rerio]
Length = 557
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M + + GR L IKE + + R
Sbjct: 105 VGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHAR 164
Query: 115 RNMGG-----GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GGG +D S + N N + + + +L L +FVANLD+
Sbjct: 165 RVLQRSGRMYGGGRGQDSSGI--NIPPSIANNPNIPHEIISALQAG-RLGATIFVANLDF 221
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V ++ DKDGKSRG GTV F+ P+EAVQ+ISM N Q LF+R+
Sbjct: 222 KVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQ 281
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 282 MHVKMD 287
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NL ++WQ+L++KF +CG + +AEIK GK G VRFDS +A++A +M+
Sbjct: 482 IFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGKSKGCGTVRFDSPESAEKACRLMNG 541
Query: 575 TRIDGKIIDV 584
T+I+G+ +DV
Sbjct: 542 TKINGREVDV 551
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 481 QIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACRLM 539
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 540 NGTKINGREVDVRLDRNA 557
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRA 568
R+ V + N+P WQ ++D R G++ + E+ G+ G+V F E K+A
Sbjct: 79 HRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKA 138
Query: 569 IDMMDRTRIDGKIIDV 584
I++M + ++G+ +++
Sbjct: 139 IEVMSKHDLNGRPLNI 154
>gi|38511616|gb|AAH60946.1| Myef2 protein [Mus musculus]
Length = 454
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRPLNI 120
>gi|244790095|ref|NP_001155890.1| myelin expression factor 2 isoform 3 [Mus musculus]
Length = 550
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 294 MHVKMD 299
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 475 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 534
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 535 IKISGREIDV 544
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 473 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 531
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 532 MNGIKISGREIDVRLDRNA 550
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 77 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 135
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 136 VVEFKDEEFVKKALETMNKYDLSGRPLNI 164
>gi|19548762|gb|AAL90778.1| myelin gene expression factor [Mus musculus]
gi|19548764|gb|AAL90779.1| myelin gene expression factor [Mus musculus]
gi|74226274|dbj|BAE25318.1| unnamed protein product [Mus musculus]
Length = 530
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 130
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 455 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 514
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 515 IKISGREIDV 524
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 453 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 511
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 512 MNGIKISGREIDVRLDRNA 530
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRPLNI 120
>gi|354488283|ref|XP_003506300.1| PREDICTED: myelin expression factor 2 [Cricetulus griseus]
Length = 557
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 115/191 (60%), Gaps = 16/191 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 81 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 140
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGN-TYGLSPQFLESLGINCPLINK---------VFV 164
R + R ++ +++S G+ L P L + I +I+ +FV
Sbjct: 141 R------ALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFV 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
ANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 195 ANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQF 254
Query: 225 LFERRITVRMD 235
LF+R + V+MD
Sbjct: 255 LFDRPMHVKMD 265
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 482 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 541
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 542 IKISGREIDV 551
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 480 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 538
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 539 MNGIKISGREIDVRLDRNA 557
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 43 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 101
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 102 VVEFKDEEFVKKALETMNKYDLSGRPLNI 130
>gi|348538711|ref|XP_003456834.1| PREDICTED: myelin expression factor 2-like, partial [Oreochromis
niloticus]
Length = 503
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KAV M++ + GR L IKE + + R
Sbjct: 104 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAVLTMNKHDLSGRPLNIKEDPDGEHAR 163
Query: 115 RNMGGGGGVDRDLSAL-----LQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG + + N N + P+ + +L L N VFVANLD+
Sbjct: 164 RVLQRMGGGQQGGRGQDMGPGVMNLPPSIANNPNIPPEVIHALEAGR-LGNTVFVANLDF 222
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ ++ DKDGKSRG GTV F+ P+EAVQ+ISM N Q LF+R+
Sbjct: 223 KVGWKKLKEVFSMAGVVKRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQ 282
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 283 MHVKMD 288
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 492 SGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRN-CGDIKFAEI-- 548
SGG R ++ + R+ V + N+P + WQ ++D R+ G++ + E+
Sbjct: 55 SGGRRGGRYHPYKDKHGGEKKGAHRNRVFISNIPYDMKWQAIKDLMRDKVGEVTYVELFK 114
Query: 549 ----KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
K +G G+V F E K+A+ M++ + G+ +++
Sbjct: 115 DAEGKSRG-CGVVEFKDEEFVKKAVLTMNKHDLSGRPLNI 153
>gi|449471540|ref|XP_004176973.1| PREDICTED: LOW QUALITY PROTEIN: myelin expression factor 2
[Taeniopygia guttata]
Length = 571
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA++ M++++ GR L IKE E + R
Sbjct: 97 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALDTMNKYDLSGRPLNIKEDPEGEHAR 156
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG D + + N N + P+ + +L L + +FVANLD+
Sbjct: 157 RALQRGGGQFPGGHGSDAAPGMMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 215
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 216 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 275
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 276 MHVKMD 281
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 494 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 553
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 554 NGIKISGREIDV 565
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 121 GGVDRDLSALLQNNSSKFGNT-------YGLSPQFL-----ESLGINCPLINKVFVANLD 168
G+DR S + + G G P + E LG N++FV NL
Sbjct: 446 MGIDRMGSGFDRMGPAMGGGLDRNMDIDRGFVPGPMGSGMRERLGSKG---NQIFVRNLP 502
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ ++N + R
Sbjct: 503 FDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRIMNGIKISGR 561
Query: 229 RITVRMDRVA 238
I VR+DR A
Sbjct: 562 EIDVRLDRNA 571
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 514 IERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLVRFDSEWTAK 566
+ R+ V + N+P + WQ ++D R G++ + E+ K +G G+V F E K
Sbjct: 70 VSRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CGVVEFKDEEFVK 128
Query: 567 RAIDMMDRTRIDGKIIDV 584
+A+D M++ + G+ +++
Sbjct: 129 KALDTMNKYDLSGRPLNI 146
>gi|47230653|emb|CAF99846.1| unnamed protein product [Tetraodon nigroviridis]
Length = 347
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 113/189 (59%), Gaps = 9/189 (4%)
Query: 55 VGDVTYVEILNDDTGKPR---GSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+G+VTYVE+ D GK R G +VEF+ D V+KA+ M++ + GR L IKE + +
Sbjct: 76 IGEVTYVELFKDAEGKSRVSDGCGVVEFKDEDFVKKAIETMNKHDLSGRPLNIKEDPDGE 135
Query: 112 GGRRNMGGGGGVDRDLSALL-----QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
RR + GG + N N + P+ + +L L N VFVAN
Sbjct: 136 HARRVLQRMGGGQQGGRGQDMGYGGMNIPPSIANNPNIPPEVIHALQAG-RLGNTVFVAN 194
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
LD+KV KKL+EVF +AG V+ ++ DKDGKSRG GTV F+ P+EAVQ+ISMLN Q LF
Sbjct: 195 LDFKVGWKKLKEVFSMAGVVKRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMLNGQMLF 254
Query: 227 ERRITVRMD 235
+R++ V+MD
Sbjct: 255 DRQMHVKMD 263
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 160 NKVFVANLDYKVDEKKLREVFR-----LAGKVENVEIALDKDGKSR---GFGTVEFDHPV 211
N+VF++N+ Y + + ++++ R + G+V VE+ D +GKSR G G VEF
Sbjct: 48 NRVFISNIPYDMKWQAIKDLMREKGNVMIGEVTYVELFKDAEGKSRVSDGCGVVEFKDED 107
Query: 212 EAVQSISMLNNQNLFERRITVRMD 235
++I +N +L R + ++ D
Sbjct: 108 FVKKAIETMNKHDLSGRPLNIKED 131
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 510 QSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI---------KGKGDI----GL 556
+ + R+ V + N+P + WQ ++D R G++ E+ +GK + G+
Sbjct: 41 EKKSAHRNRVFISNIPYDMKWQAIKDLMREKGNVMIGEVTYVELFKDAEGKSRVSDGCGV 100
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
V F E K+AI+ M++ + G+ +++
Sbjct: 101 VEFKDEDFVKKAIETMNKHDLSGRPLNI 128
>gi|56756797|gb|AAW26570.1| SJCHGC01283 protein [Schistosoma japonicum]
Length = 409
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR-RNMGGGGGVDRDL 127
G+P G ++EF++ + +KA+ MHRFE RKLV++E R +M G + D
Sbjct: 76 GRPNGMGLMEFKTLEGAQKAIETMHRFEIGDRKLVVREETARDAARIASMEVDGSLPSDS 135
Query: 128 SALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVE 187
+ N+ G Y +PQ L +GI P+ + V+V+NLDY V +KL++VF+LAGKV
Sbjct: 136 NPSDSTNTVSSGPIY--TPQVLSQMGIEGPVTDSVYVSNLDYSVTWRKLKDVFKLAGKVT 193
Query: 188 NVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
+ I D +G SRG G ++F HP EAVQ++SM NNQ L +R + V++DR
Sbjct: 194 SSIIKTDAEGNSRGVGILKFSHPYEAVQAVSMFNNQILKDRPMRVKIDR 242
>gi|5410336|gb|AAD43038.1| myelin gene expression factor 2 [Homo sapiens]
Length = 547
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR++ IKE + + R
Sbjct: 71 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRRVNIKEDPDGENAR 130
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 131 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 189
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 190 KVGWKKLKEVFSIAGTVKAGSYKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 249
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 250 MHVKMD 255
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 472 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 531
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 532 IKISGREIDV 541
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 470 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 528
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 529 MNGIKISGREIDVRLDRNA 547
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 33 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 91
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 92 VVEFKDEEFVKKALETMNKYDLSGRRVNI 120
>gi|29841314|gb|AAP06346.1| similar to myelin gene expression factor in Mus musculus
[Schistosoma japonicum]
Length = 334
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR-RNMGGGGGVDRDL 127
G+P G ++EF++ + +KA+ MHRFE RKLV++E R +M G + D
Sbjct: 76 GRPNGMGLMEFKTLEGAQKAIETMHRFEIGDRKLVVREETARDAARIASMEVDGSLPSDS 135
Query: 128 SALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVE 187
+ N+ G Y +PQ L +GI P+ + V+V+NLDY V +KL++VF+LAGKV
Sbjct: 136 NPSDSTNTVSSGPIY--TPQVLSQMGIEGPVTDSVYVSNLDYSVTWRKLKDVFKLAGKVT 193
Query: 188 NVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
+ I D +G SRG G ++F HP EAVQ++SM NNQ L +R + V++DR
Sbjct: 194 SSIIKTDAEGNSRGVGILKFSHPYEAVQAVSMFNNQILKDRPMRVKIDR 242
>gi|443685585|gb|ELT89139.1| hypothetical protein CAPTEDRAFT_221771 [Capitella teleta]
Length = 679
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 96/129 (74%), Gaps = 6/129 (4%)
Query: 147 QFLESLGIN-CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTV 205
Q L L I+ L +VFVANLDYKV ++KL+++F++AG V + E+ +DK+GKSRG G V
Sbjct: 240 QMLSQLEIDPSNLTQQVFVANLDYKVSDRKLKDIFKMAGNVVSCELKMDKEGKSRGMGIV 299
Query: 206 EFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD-----RLDGPVRLPEGLKSIGMGLGA 260
F+H +EAVQ+ISM +NQ L++R + VRMD++++ + P R+P GLK++GMGLGA
Sbjct: 300 RFEHAMEAVQAISMFHNQPLYDRTMAVRMDKMSEVSPDCKQYVPDRIPAGLKTVGMGLGA 359
Query: 261 NGAPLQDVA 269
+G PLQ+V+
Sbjct: 360 SGTPLQNVS 368
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 9/109 (8%)
Query: 484 GSGQASIQSGGYGNPRAGLDSNRS---MNQSSNIERDTVVVKNLPPTITWQELRDKFRNC 540
GS Q + S G R G+D RS MN+ N + +V V+NLP ++TWQ L++KFR+C
Sbjct: 567 GSQQMGLNSMAAGGSRGGMDRQRSSNSMNRGENEDACSVFVRNLPFSVTWQGLKEKFRDC 626
Query: 541 GDIKFAEIK-----GKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
GD+++ EIK KG G+V+F + A+RA+++M+ R DG+ I+V
Sbjct: 627 GDVRYTEIKMENGRSKG-FGVVKFTTSDDARRAVNLMNGARFDGRQIEV 674
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL + V + L+E FR G V EI ++ +G+S+GFG V+F +A ++++++N
Sbjct: 605 VFVRNLPFSVTWQGLKEKFRDCGDVRYTEIKME-NGRSKGFGVVKFTTSDDARRAVNLMN 663
Query: 222 NQNLFERRITVRMDR 236
R+I VR+++
Sbjct: 664 GARFDGRQIEVRLEK 678
>gi|345319986|ref|XP_001506341.2| PREDICTED: myelin expression factor 2-like, partial
[Ornithorhynchus anatinus]
Length = 507
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+V YVE+ D G+ RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 79 VGEVAYVELFKDAEGQSRGCGVVEFRDGEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 138
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFG-NTYGLSPQFLESLGINCPLINK---------VFV 164
R + GG L + + G L P L + + +++ VFV
Sbjct: 139 RALHRPGG------PLPAGHGPEMGPGLTSLPPSILNNPNVPLEVLSNLQAGRLGSTVFV 192
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
ANLD+KV KKL+EVF +AG V+ ++ DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 193 ANLDFKVGWKKLKEVFSIAGSVKRADVKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQF 252
Query: 225 LFERRITVRMD 235
LF+R + V+MD
Sbjct: 253 LFDRPMHVKMD 263
>gi|62859395|ref|NP_001016035.1| myelin expression factor 2 [Xenopus (Silurana) tropicalis]
gi|170285107|gb|AAI61028.1| myelin expression factor 2 [Xenopus (Silurana) tropicalis]
Length = 616
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RGS +VEF+ + V KAV M++ + GR L IK + + R
Sbjct: 104 VGEVTYVELFKDAEGKSRGSGVVEFRDMEYVTKAVEVMNKHDLNGRPLNIKADPDGEHAR 163
Query: 115 RNMG--------------GGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
R + GG D++ + N N + P+ + +L L
Sbjct: 164 RALSRGGGGGGGGAGGGPFPGGHGSDMAPGITNIPPSIVNNPNIPPEIIGALRAG-RLGT 222
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
VFVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ P+EAVQ+ISM
Sbjct: 223 TVFVANLDFKVGWKKLKEVFCIAGTVKRADIKEDKDGKSRGMGTVTFEQPIEAVQAISMF 282
Query: 221 NNQNLFERRITVRMD 235
N Q LF+R + V+MD
Sbjct: 283 NGQFLFDRPMHVKMD 297
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Query: 493 GGYGNPRAGLDS-NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK-- 549
GGYG+ + G S +R M++ I V+NLP +TWQ+L++KF CG + FAEIK
Sbjct: 519 GGYGSAQLGSGSRDRGMSKGCQI-----FVRNLPFDLTWQKLKEKFNQCGRVMFAEIKME 573
Query: 550 -GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
GK G VRFD TA++A +M+ +I+G+ IDV
Sbjct: 574 NGKSKGCGTVRFDCPETAEKACRLMNGIKINGREIDV 610
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 540 QIFVRNLPFDLTWQKLKEKFNQCGRVMFAEIKME-NGKSKGCGTVRFDCPETAEKACRLM 598
Query: 221 NNQNLFERRITVRMDRVA 238
N + R I VR+DR A
Sbjct: 599 NGIKINGREIDVRLDRNA 616
>gi|89269825|emb|CAJ81625.1| novel protein containing three RNA recognition motifs. (a.k.a. RRM,
RBD, or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 617
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RGS +VEF+ + V KAV M++ + GR L IK + + R
Sbjct: 105 VGEVTYVELFKDAEGKSRGSGVVEFRDMEYVTKAVEVMNKHDLNGRPLNIKADPDGEHAR 164
Query: 115 RNMG--------------GGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
R + GG D++ + N N + P+ + +L L
Sbjct: 165 RALSRGGGGGGGGAGGGPFPGGHGSDMAPGITNIPPSIVNNPNIPPEIIGALRAG-RLGT 223
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
VFVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ P+EAVQ+ISM
Sbjct: 224 TVFVANLDFKVGWKKLKEVFCIAGTVKRADIKEDKDGKSRGMGTVTFEQPIEAVQAISMF 283
Query: 221 NNQNLFERRITVRMD 235
N Q LF+R + V+MD
Sbjct: 284 NGQFLFDRPMHVKMD 298
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Query: 493 GGYGNPRAGLDS-NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK-- 549
GGYG+ + G S +R M++ I V+NLP +TWQ+L++KF CG + FAEIK
Sbjct: 520 GGYGSAQLGSGSRDRGMSKGCQI-----FVRNLPFDLTWQKLKEKFNQCGRVMFAEIKME 574
Query: 550 -GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
GK G VRFD TA++A +M+ +I+G+ IDV
Sbjct: 575 NGKSKGCGTVRFDCPETAEKACRLMNGIKINGREIDV 611
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 541 QIFVRNLPFDLTWQKLKEKFNQCGRVMFAEIKME-NGKSKGCGTVRFDCPETAEKACRLM 599
Query: 221 NNQNLFERRITVRMDRVA 238
N + R I VR+DR A
Sbjct: 600 NGIKINGREIDVRLDRNA 617
>gi|148236313|ref|NP_001090142.1| myelin expression factor 2 [Xenopus laevis]
gi|80477220|gb|AAI08588.1| MGC131089 protein [Xenopus laevis]
Length = 673
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 111/189 (58%), Gaps = 9/189 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG+ +VEF+ + V KAV M++ + GR L IK + + R
Sbjct: 153 VGEVTYVELFKDAEGKSRGNGVVEFRDMEYVTKAVEVMNKQDLNGRPLNIKADPDGEHAR 212
Query: 115 RNM--------GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
R + GG D+ + N N + P+ + +L L +FVAN
Sbjct: 213 RALQRGGSGGGPFPGGHGSDMGPGMMNIPPSIMNNPNIPPEIIGALRAG-RLGTTIFVAN 271
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
LD+KV KKL+EVF ++G V+ +I DKDGKSRG GTV F+ P+EAVQ+ISM N Q LF
Sbjct: 272 LDFKVGWKKLKEVFCISGTVKRADIKEDKDGKSRGMGTVTFEQPIEAVQAISMFNGQFLF 331
Query: 227 ERRITVRMD 235
+R + V+MD
Sbjct: 332 DRPMHVKMD 340
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Query: 493 GGYGNPRAGLDS-NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK-- 549
GGYG+ + G S +R M++ I V+NLP +TWQ+L++KF CG + FAEIK
Sbjct: 576 GGYGSAQLGGGSRDRGMSKGCQI-----FVRNLPFDLTWQKLKEKFNQCGRVMFAEIKME 630
Query: 550 -GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
GK G VRFD TA++A +M+ +I+G+ IDV
Sbjct: 631 NGKSKGCGTVRFDCPETAEKACRLMNGMKINGREIDV 667
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 597 QIFVRNLPFDLTWQKLKEKFNQCGRVMFAEIKME-NGKSKGCGTVRFDCPETAEKACRLM 655
Query: 221 NNQNLFERRITVRMDRVA 238
N + R I VR+DR A
Sbjct: 656 NGMKINGREIDVRLDRNA 673
>gi|345786673|ref|XP_854270.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform 2
[Canis lupus familiaris]
Length = 743
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 147 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 206
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 207 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 231
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 232 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 291
Query: 235 DRVA 238
D A
Sbjct: 292 DERA 295
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 668 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 727
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 728 MKLSGREIDV 737
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 667 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 725
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 726 NGMKLSGREIDVRIDRNA 743
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 124 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 183
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 184 LNKHSLSGRPLKVKED 199
>gi|410950261|ref|XP_003981828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Felis catus]
Length = 757
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 161 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 220
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 221 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 245
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 246 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 305
Query: 235 DRVA 238
D A
Sbjct: 306 DERA 309
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 682 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 741
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 742 MKLSGREIDV 751
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 681 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 739
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 740 NGMKLSGREIDVRIDRNA 757
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 138 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 197
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 198 LNKHSLSGRPLKVKED 213
>gi|417412446|gb|JAA52610.1| Putative rna-binding protein hnrnp-m, partial [Desmodus rotundus]
Length = 720
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 124 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 183
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 184 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 208
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 209 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 268
Query: 235 DRVA 238
D A
Sbjct: 269 DERA 272
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 645 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 704
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 705 MKLSGREIDV 714
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 644 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 702
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 703 NGMKLSGREIDVRIDRNA 720
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 101 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 160
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 161 LNKHSLSGRPLKVKED 176
>gi|344299383|ref|XP_003421365.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like
[Loxodonta africana]
Length = 676
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 601 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 660
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 661 MKLSGREIDV 670
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 600 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 658
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 659 NGMKLSGREIDVRIDRNA 676
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|417412294|gb|JAA52537.1| Putative rna-binding protein hnrnp-m, partial [Desmodus rotundus]
Length = 682
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 104 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 163
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 164 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 188
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 189 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 248
Query: 235 DRVA 238
D A
Sbjct: 249 DERA 252
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 607 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 666
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 667 MKLSGREIDV 676
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 606 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 664
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 665 NGMKLSGREIDVRIDRNA 682
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 81 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 140
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 141 LNKHSLSGRPLKVKED 156
>gi|432104447|gb|ELK31071.1| Heterogeneous nuclear ribonucleoprotein M [Myotis davidii]
Length = 691
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|301785986|ref|XP_002928409.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like
[Ailuropoda melanoleuca]
Length = 835
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 239 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 298
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 299 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 323
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 324 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 383
Query: 235 DRVA 238
D A
Sbjct: 384 DERA 387
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 760 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 819
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 820 MKLSGREIDV 829
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 759 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 817
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 818 NGMKLSGREIDVRIDRNA 835
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 216 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 275
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 276 LNKHSLSGRPLKVKED 291
>gi|390478484|ref|XP_002761735.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform 2
[Callithrix jacchus]
Length = 737
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 141 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 200
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 201 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 225
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 226 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 285
Query: 235 DRVA 238
D A
Sbjct: 286 DERA 289
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 662 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 721
Query: 575 TRIDGKIIDV 584
+++G+ IDV
Sbjct: 722 MKLNGREIDV 731
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 661 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 719
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 720 NGMKLNGREIDVRIDRNA 737
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 118 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 177
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 178 LNKHSLSGRPLKVKED 193
>gi|16124253|gb|AAA83442.2| M4 protein [Rattus norvegicus]
Length = 697
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 101 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 160
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 161 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 185
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 186 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 245
Query: 235 DRVA 238
D A
Sbjct: 246 DERA 249
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 622 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 681
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 682 MKLSGREIDV 691
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 621 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 679
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 680 NGMKLSGREIDVRIDRNA 697
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 78 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 137
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 138 LNKHSLSGRPLKVKED 153
>gi|380806945|gb|AFE75348.1| heterogeneous nuclear ribonucleoprotein M isoform b, partial
[Macaca mulatta]
Length = 666
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 80 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 139
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 140 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 164
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 165 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 224
Query: 235 DRVA 238
D A
Sbjct: 225 DERA 228
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 601 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 660
Query: 575 TRIDGK 580
++ G+
Sbjct: 661 MKLSGR 666
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 57 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 116
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 117 LNKHSLSGRPLKVKED 132
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 600 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 658
Query: 221 NNQNLFER 228
N L R
Sbjct: 659 NGMKLSGR 666
>gi|158186696|ref|NP_446328.2| heterogeneous nuclear ribonucleoprotein M isoform b [Rattus
norvegicus]
Length = 690
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 154 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 178
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 179 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 238
Query: 235 DRVA 238
D A
Sbjct: 239 DERA 242
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
>gi|348551254|ref|XP_003461445.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Cavia
porcellus]
Length = 691
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 VKLSGREIDV 685
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGVKLSGREIDVRIDRNA 691
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|3126878|gb|AAC16002.1| M4 protein deletion mutant [Homo sapiens]
Length = 691
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGECAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|71152132|sp|Q62826.4|HNRPM_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein M;
Short=hnRNP M; AltName: Full=M4 protein
Length = 690
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 154 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 178
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 179 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 238
Query: 235 DRVA 238
D A
Sbjct: 239 DERA 242
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
>gi|395841776|ref|XP_003793709.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Otolemur
garnettii]
Length = 691
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|426229073|ref|XP_004008618.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Ovis aries]
gi|296485764|tpg|DAA27879.1| TPA: heterogeneous nuclear ribonucleoprotein M isoform 2 [Bos
taurus]
Length = 691
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|157412270|ref|NP_112480.2| heterogeneous nuclear ribonucleoprotein M isoform b [Homo sapiens]
gi|426387024|ref|XP_004059978.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Gorilla
gorilla gorilla]
gi|16905456|gb|AAL31359.1|L32611_1 ribonucleoprotein [Homo sapiens]
gi|119589326|gb|EAW68920.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_b [Homo
sapiens]
gi|410302810|gb|JAA30005.1| heterogeneous nuclear ribonucleoprotein M [Pan troglodytes]
Length = 691
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|349732227|ref|NP_001231859.1| heterogeneous nuclear ribonucleoprotein M [Sus scrofa]
Length = 691
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|297703417|ref|XP_002828635.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform 2
[Pongo abelii]
Length = 691
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 676 MKLSGREIDV 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 615 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 673
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 674 NGMKLSGREIDVRIDRNA 691
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|296485763|tpg|DAA27878.1| TPA: heterogeneous nuclear ribonucleoprotein M isoform 1 [Bos
taurus]
Length = 673
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 598 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 657
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 658 MKLSGREIDV 667
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 597 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 655
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 656 NGMKLSGREIDVRIDRNA 673
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|194374359|dbj|BAG57075.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|126323781|ref|XP_001365846.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform 1
[Monodelphis domestica]
Length = 699
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFCMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 624 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 683
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 684 IKLSGREIDV 693
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 623 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 681
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 682 NGIKLSGREIDVRIDRNA 699
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|194213336|ref|XP_001491163.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Equus
caballus]
Length = 598
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 80 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 139
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 140 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 164
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 165 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 224
Query: 235 DRVA 238
D A
Sbjct: 225 DERA 228
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 523 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 582
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 583 MKLSGREIDV 592
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 522 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 580
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 581 NGMKLSGREIDVRIDRNA 598
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 57 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 116
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 117 LNKHSLSGRPLKVKED 132
>gi|326934244|ref|XP_003213202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like
[Meleagris gallopavo]
Length = 717
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 17/195 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 74 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPDGEHAR 133
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYG--LSPQFLESLGINCPLINK---------VF 163
R M + ++A G + P L + I +I+ VF
Sbjct: 134 RAM------QKVMAAGGMGIGPGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVF 187
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 188 VANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFNGQ 247
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 248 LLFDRPMHVKMDERA 262
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 14/111 (12%)
Query: 478 EMDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKF 537
EM+ G +G + GG G P AG+ + V+NLP TW+ L+DKF
Sbjct: 611 EMERGNFAGNFAGSLGGTGGPAAGVARKAC----------QIFVRNLPFDFTWKMLKDKF 660
Query: 538 RNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
CG + +A+IK GK G+VRF+S A+RA MM+ ++ G+ IDV
Sbjct: 661 NECGHVLYADIKMENGKSKGCGVVRFESPEVAERACRMMNGIQLRGREIDV 711
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V F+ P A ++ M+
Sbjct: 641 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVRFESPEVAERACRMM 699
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 700 NGIQLRGREIDVRIDRNA 717
>gi|395513418|ref|XP_003760921.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Sarcophilus
harrisii]
Length = 704
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 155 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 180 KLKEVFCMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 239
Query: 235 DRVA 238
D A
Sbjct: 240 DERA 243
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 629 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 688
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 689 IKLSGREIDV 698
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 628 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 686
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 687 NGIKLSGREIDVRIDRNA 704
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|71896353|ref|NP_001026103.1| heterogeneous nuclear ribonucleoprotein M [Gallus gallus]
gi|53130368|emb|CAG31513.1| hypothetical protein RCJMB04_7e17 [Gallus gallus]
Length = 709
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 17/195 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 100 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPDGEHAR 159
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYG--LSPQFLESLGINCPLINK---------VF 163
R M + ++A G + P L + I +I+ VF
Sbjct: 160 RAM------QKVMAAGGMGIGPGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVF 213
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 214 VANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFNGQ 273
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 274 LLFDRPMHVKMDERA 288
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 14/111 (12%)
Query: 478 EMDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKF 537
EM+ G +G + GG G P AG+ + V+NLP TW+ L+DKF
Sbjct: 603 EMERGNFAGNFAGSLGGTGGPAAGVARKAC----------QIFVRNLPFDFTWKMLKDKF 652
Query: 538 RNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
CG + +A+IK GK G+VRF+S A+RA MM+ ++ G+ IDV
Sbjct: 653 NECGHVLYADIKMENGKSKGCGVVRFESPEVAERACRMMNGIQLRGREIDV 703
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V F+ P A ++ M+
Sbjct: 633 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVRFESPEVAERACRMM 691
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 692 NGIQLRGREIDVRIDRNA 709
>gi|417404237|gb|JAA48884.1| Putative rna-binding protein hnrnp-m [Desmodus rotundus]
Length = 730
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 155 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 209
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q L
Sbjct: 210 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 269
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 270 FDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
>gi|351701309|gb|EHB04228.1| Heterogeneous nuclear ribonucleoprotein M [Heterocephalus glaber]
Length = 717
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 155 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 209
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q L
Sbjct: 210 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 269
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 270 FDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 642 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 701
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 702 MKLSGREIDV 711
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 641 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 699
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 700 NGMKLSGREIDVRIDRNA 717
>gi|417404098|gb|JAA48823.1| Putative rna-binding protein hnrnp-m [Desmodus rotundus]
Length = 712
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 155 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 209
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q L
Sbjct: 210 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 269
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 270 FDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 637 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 696
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 697 MKLSGREIDV 706
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 636 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 694
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 695 NGMKLSGREIDVRIDRNA 712
>gi|410921570|ref|XP_003974256.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Takifugu
rubripes]
Length = 690
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 110/197 (55%), Gaps = 16/197 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE L D GK RG AIVEF++ +L++KAV K+++ GR L +KE + +
Sbjct: 101 VGEVTYVEHLMDAEGKSRGCAIVEFRTEELMKKAVEKVNKHNFNGRPLKVKEDPDGVIAQ 160
Query: 115 RNMGGGGGVDRDLSALLQNNSSKF-------GNTYGLSPQFLESLGINCPLI-------- 159
R + GV G+ + P L + I +I
Sbjct: 161 REINKSQGVGPQGGHGGMGGMGMDRMGPGPSGSMVNIPPSLLNNPNIPTEVIHGLQAGRI 220
Query: 160 -NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV FD P+EAVQ++S
Sbjct: 221 GNTVFVANLDYKVGWKKLKEVFIMAGLVVRTDILEDKDGKSRGMGTVTFDSPLEAVQAVS 280
Query: 219 MLNNQNLFERRITVRMD 235
M N Q LF R + V++D
Sbjct: 281 MFNGQLLFNRVMHVKLD 297
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 30/141 (21%)
Query: 455 PSTDYSRNASNMYGNSRYGSGG-------NEMDYGGGSGQASIQSGGYGNPRAGLDSNRS 507
PS R + M R GSGG +++D G G G +GG GN R G
Sbjct: 563 PSGGLDRMGTGM---DRMGSGGVGQFDRTSDLDRGFG-GNTFRGTGGPGNVRKGC----- 613
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEW 563
+ V+NLP TW+ L+D F G +++A+IK GK G+VRFDS
Sbjct: 614 ----------QIFVRNLPFDFTWKNLKDTFNAYGMVQYADIKMENGKSKGCGVVRFDSPE 663
Query: 564 TAKRAIDMMDRTRIDGKIIDV 584
TA+R M+ R++G+ IDV
Sbjct: 664 TAERVCQTMNGYRLNGREIDV 684
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V+ +I ++ +GKS+G G V FD P A + +
Sbjct: 614 QIFVRNLPFDFTWKNLKDTFNAYGMVQYADIKME-NGKSKGCGVVRFDSPETAERVCQTM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGYRLNGREIDVRIDRNA 690
>gi|403296087|ref|XP_003938952.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Saimiri
boliviensis boliviensis]
Length = 730
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 155 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 207
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 208 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 267
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 268 LLFDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
>gi|449491936|ref|XP_004174695.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein M-like [Taeniopygia guttata]
Length = 664
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 17/195 (8%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 101 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPDGEHAR 160
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYG--LSPQFLESLGINCPLINK---------VF 163
R M + ++A G + P L + I +I+ VF
Sbjct: 161 RAM------QKVMAAGGMGIGPGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVF 214
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 215 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFNGQ 274
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 275 LLFDRPMHVKMDERA 289
>gi|300795137|ref|NP_001178152.1| heterogeneous nuclear ribonucleoprotein M [Bos taurus]
gi|296485765|tpg|DAA27880.1| TPA: heterogeneous nuclear ribonucleoprotein M isoform 3 [Bos
taurus]
gi|440910195|gb|ELR60020.1| Heterogeneous nuclear ribonucleoprotein M [Bos grunniens mutus]
Length = 730
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 155 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 209
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q L
Sbjct: 210 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 269
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 270 FDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
>gi|380806947|gb|AFE75349.1| heterogeneous nuclear ribonucleoprotein M isoform a, partial
[Macaca mulatta]
Length = 705
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 80 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 139
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 140 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 192
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 193 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 252
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 253 LLFDRPMHVKMDERA 267
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 640 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 699
Query: 575 TRIDGK 580
++ G+
Sbjct: 700 MKLSGR 705
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 639 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 697
Query: 221 NNQNLFER 228
N L R
Sbjct: 698 NGMKLSGR 705
>gi|115613197|ref|XP_786244.2| PREDICTED: myelin expression factor 2-like [Strongylocentrotus
purpuratus]
Length = 734
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 18/191 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VGDV YVE+ + G +G A VEF+S D +KA+ +M RFE RKLV+K ED GR
Sbjct: 145 VGDVGYVELFANTDGTSKGCAFVEFKSKDDAKKALTEMDRFEVHNRKLVVK---EDSEGR 201
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCP--LINKVFVANLDYKVD 172
+ + ++ L+PQ L L ++ P L + VFVANL Y V
Sbjct: 202 HS-----------EKYFRQREAEDKARNVLTPQLLTQLNLD-PNNLCDTVFVANLPYDVS 249
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+KL++VF++AG V VEI +++ GKSRG TV+F+ + AV +I M + Q L++RR+ V
Sbjct: 250 WRKLKDVFKMAGPVSRVEI-MEEKGKSRGMATVQFETILAAVNAICMFDGQTLYDRRMAV 308
Query: 233 RMDRVADRLDG 243
RMD+ R G
Sbjct: 309 RMDKEKVRTGG 319
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VFV NL + +KL++VF+ G V + D+ G+SRGFGTV FD+ ++A +I+M
Sbjct: 658 QVFVRNLPFSYSWQKLKDVFKDVGNVTFASVKTDERGQSRGFGTVRFDNSMDAQNAINMK 717
Query: 221 NNQNLFERRITVRMD 235
+ R I V MD
Sbjct: 718 SGSIQEGREIEVTMD 732
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V V+NLP + +WQ+L+D F++ G++ FA +K +G G VRFD+ A+ AI+M
Sbjct: 659 VFVRNLPFSYSWQKLKDVFKDVGNVTFASVKTDERGQSRG-FGTVRFDNSMDAQNAINMK 717
Query: 573 DRTRIDGKIIDVTF 586
+ +G+ I+VT
Sbjct: 718 SGSIQEGREIEVTM 731
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 162 VFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
VF++N++YKV ++L+++ R G V VE+ + DG S+G VEF +A ++++ +
Sbjct: 123 VFISNIEYKVTWQELKDILKRHVGDVGYVELFANTDGTSKGCAFVEFKSKDDAKKALTEM 182
Query: 221 NNQNLFERRITVRMD 235
+ + R++ V+ D
Sbjct: 183 DRFEVHNRKLVVKED 197
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 518 TVVVKNLPPTITWQELRDKF-RNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDM 571
V + N+ +TWQEL+D R+ GD+ + E+ D V F S+ AK+A+
Sbjct: 122 CVFISNIEYKVTWQELKDILKRHVGDVGYVELFANTDGTSKGCAFVEFKSKDDAKKALTE 181
Query: 572 MDRTRIDGKIIDV 584
MDR + + + V
Sbjct: 182 MDRFEVHNRKLVV 194
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEI---KGKGD-IGLVRFDSEWTAKRAIDMM 572
DTV V NLP ++W++L+D F+ G + EI KGK + V+F++ A AI M
Sbjct: 237 DTVFVANLPYDVSWRKLKDVFKMAGPVSRVEIMEEKGKSRGMATVQFETILAAVNAICMF 296
Query: 573 D 573
D
Sbjct: 297 D 297
>gi|14141152|ref|NP_005959.2| heterogeneous nuclear ribonucleoprotein M isoform a [Homo sapiens]
gi|397477325|ref|XP_003810023.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Pan paniscus]
gi|410053112|ref|XP_001159326.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform 18
[Pan troglodytes]
gi|55977747|sp|P52272.3|HNRPM_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein M;
Short=hnRNP M
gi|13111793|gb|AAH00138.2| Heterogeneous nuclear ribonucleoprotein M [Homo sapiens]
gi|18044562|gb|AAH19580.1| Heterogeneous nuclear ribonucleoprotein M [Homo sapiens]
gi|119589325|gb|EAW68919.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_a [Homo
sapiens]
gi|410302808|gb|JAA30004.1| heterogeneous nuclear ribonucleoprotein M [Pan troglodytes]
Length = 730
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 155 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 207
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 208 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 267
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 268 LLFDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
>gi|60360010|dbj|BAD90224.1| mKIAA4193 protein [Mus musculus]
Length = 703
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 101/184 (54%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 107 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 166
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 167 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 191
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 192 KLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 251
Query: 235 DRVA 238
D A
Sbjct: 252 DERA 255
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 628 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 687
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 688 MKLSGREIDV 697
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 627 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 685
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 686 NGMKLSGREIDVRIDRNA 703
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 84 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 143
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 144 LNKHSLSGRPLKVKED 159
>gi|158186704|ref|NP_001103383.1| heterogeneous nuclear ribonucleoprotein M isoform b [Mus musculus]
gi|40796184|gb|AAH65172.1| Hnrpm protein [Mus musculus]
gi|74178992|dbj|BAE42723.1| unnamed protein product [Mus musculus]
gi|74208369|dbj|BAE26377.1| unnamed protein product [Mus musculus]
gi|74212252|dbj|BAE40284.1| unnamed protein product [Mus musculus]
Length = 690
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 101/184 (54%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 154 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 178
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 179 KLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 238
Query: 235 DRVA 238
D A
Sbjct: 239 DERA 242
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
>gi|187281|gb|AAA36192.1| M4 protein [Homo sapiens]
Length = 729
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 154 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 206
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 207 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 266
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 267 LLFDRPMHVKMDERA 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 713
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 714 MKLSGREIDV 723
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 711
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 712 NGMKLSGREIDVRIDRNA 729
>gi|158186698|ref|NP_001103381.1| heterogeneous nuclear ribonucleoprotein M isoform a [Rattus
norvegicus]
Length = 729
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 154 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 208
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q L
Sbjct: 209 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 268
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 269 FDRPMHVKMDERA 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 713
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 714 MKLSGREIDV 723
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 711
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 712 NGMKLSGREIDVRIDRNA 729
>gi|74204715|dbj|BAE35426.1| unnamed protein product [Mus musculus]
Length = 690
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 101/184 (54%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 154 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 178
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 179 KLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 238
Query: 235 DRVA 238
D A
Sbjct: 239 DERA 242
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
>gi|345309900|ref|XP_001517591.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like, partial
[Ornithorhynchus anatinus]
Length = 220
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 56 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 115
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M G + G+T VFVANLDYKV K
Sbjct: 116 RAMQKAG---------------RLGST--------------------VFVANLDYKVGWK 140
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 141 KLKEVFCMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 200
Query: 235 DRVA 238
D A
Sbjct: 201 DERA 204
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 33 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 92
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 93 LNKHSLSGRPLKVKED 108
>gi|297276022|ref|XP_002801104.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Macaca
mulatta]
Length = 731
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 118/217 (54%), Gaps = 22/217 (10%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 119 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 178
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 179 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 231
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 232 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 291
Query: 224 NLFERRITVRMDR--VADRLDGPVRLPEGLKSIGMGL 258
LF+R + V+M V L GP PE G+G+
Sbjct: 292 LLFDRPMHVKMGERPVCAVLRGPP--PENGVECGLGI 326
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 656 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 715
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 716 MKLSGREIDVRI 727
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 655 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 713
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 714 NGMKLSGREIDVRIDRNA 731
>gi|281342866|gb|EFB18450.1| hypothetical protein PANDA_018340 [Ailuropoda melanoleuca]
Length = 692
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 57 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 116
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 117 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 171
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q L
Sbjct: 172 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 231
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 232 FDRPMHVKMDERA 244
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 617 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 676
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 677 MKLSGREIDV 686
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 616 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 674
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 675 NGMKLSGREIDVRIDRNA 692
>gi|291190830|ref|NP_001167315.1| myelin expression factor 2 [Salmo salar]
gi|223649170|gb|ACN11343.1| Myelin expression factor 2 [Salmo salar]
Length = 611
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 8/188 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L I + + R
Sbjct: 161 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAIEVMNKYDLNGRPLNIMADPDGERAR 220
Query: 115 RNM-------GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
R + GGGG ++ N + + + SL + L VFVANL
Sbjct: 221 RVLQRTGGMYPGGGGRGQEGGPGGVGVPPSIANNPNVPHEVISSLRVG-RLGTTVFVANL 279
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D+KV KKL+EVF +AG V+ ++ DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+
Sbjct: 280 DFKVGWKKLKEVFGMAGTVKRADVKEDKDGKSRGMGTVTFEQALEAVQAISMFNGQMLFD 339
Query: 228 RRITVRMD 235
R++ V+MD
Sbjct: 340 RQMHVKMD 347
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG----DIGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK +G G VRFDS +A +A MM+
Sbjct: 536 IFVRNLPYDLTWQKLKEKFSVCGQVMFAEIKMEGGKSKGCGTVRFDSPESANQACRMMNG 595
Query: 575 TRIDGKIIDV 584
T+I G+ +DV
Sbjct: 596 TKITGREVDV 605
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F + G+V EI ++ GKS+G GTV FD P A Q+ M+
Sbjct: 535 QIFVRNLPYDLTWQKLKEKFSVCGQVMFAEIKMEG-GKSKGCGTVRFDSPESANQACRMM 593
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 594 NGTKITGREVDVRIDRNA 611
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLVRFDSEWTAKR 567
R+ V + N+P WQ ++D R G++ + E+ K +G G+V F E K+
Sbjct: 135 HRNRVFISNIPYDTKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CGVVEFKDEEFVKK 193
Query: 568 AIDMMDRTRIDGKIIDV 584
AI++M++ ++G+ +++
Sbjct: 194 AIEVMNKYDLNGRPLNI 210
>gi|390364615|ref|XP_003730647.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like, partial
[Strongylocentrotus purpuratus]
Length = 324
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 108/191 (56%), Gaps = 18/191 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VGDV YVE+ + G +G A VEF+S D +KA+ +M RFE RKLV+KE E
Sbjct: 85 VGDVGYVELFANTDGTSKGCAFVEFKSKDDAKKALTEMDRFEVHNRKLVVKEDSEGHHSE 144
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCP--LINKVFVANLDYKVD 172
+ D+ + L+PQ L L ++ P L + VFVANL Y V
Sbjct: 145 KYFRQREAEDKARNV--------------LTPQLLTQLNLD-PNNLCDTVFVANLPYDVS 189
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+KL++VF++AG V VEI +++ GKSRG TV+F+ + AV +I M + Q L++RR+ V
Sbjct: 190 WRKLKDVFKMAGPVSRVEI-MEEKGKSRGMATVQFETILAAVNAICMFDGQTLYDRRMAV 248
Query: 233 RMDRVADRLDG 243
RMD+ R G
Sbjct: 249 RMDKEKVRTGG 259
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 162 VFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
VF++N++YKV ++L+++ R G V VE+ + DG S+G VEF +A ++++ +
Sbjct: 63 VFISNIEYKVTWQELKDILKRHVGDVGYVELFANTDGTSKGCAFVEFKSKDDAKKALTEM 122
Query: 221 NNQNLFERRITVRMD 235
+ + R++ V+ D
Sbjct: 123 DRFEVHNRKLVVKED 137
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 518 TVVVKNLPPTITWQELRDKF-RNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDM 571
V + N+ +TWQEL+D R+ GD+ + E+ D V F S+ AK+A+
Sbjct: 62 CVFISNIEYKVTWQELKDILKRHVGDVGYVELFANTDGTSKGCAFVEFKSKDDAKKALTE 121
Query: 572 MDRTRIDGK 580
MDR + +
Sbjct: 122 MDRFEVHNR 130
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEI---KGKGD-IGLVRFDSEWTAKRAIDMM 572
DTV V NLP ++W++L+D F+ G + EI KGK + V+F++ A AI M
Sbjct: 177 DTVFVANLPYDVSWRKLKDVFKMAGPVSRVEIMEEKGKSRGMATVQFETILAAVNAICMF 236
Query: 573 D 573
D
Sbjct: 237 D 237
>gi|74177661|dbj|BAE38931.1| unnamed protein product [Mus musculus]
Length = 679
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 105/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 154 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 208
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q L
Sbjct: 209 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLL 268
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 269 FDRPMHVKMDERA 281
>gi|21313308|ref|NP_084080.1| heterogeneous nuclear ribonucleoprotein M isoform a [Mus musculus]
gi|55976201|sp|Q9D0E1.3|HNRPM_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein M;
Short=hnRNP M
gi|12847701|dbj|BAB27675.1| unnamed protein product [Mus musculus]
gi|148678256|gb|EDL10203.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_c [Mus
musculus]
Length = 729
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 105/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 154 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 208
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q L
Sbjct: 209 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLL 268
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 269 FDRPMHVKMDERA 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 713
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 714 MKLSGREIDV 723
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 711
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 712 NGMKLSGREIDVRIDRNA 729
>gi|149031663|gb|EDL86626.1| rCG37572, isoform CRA_a [Rattus norvegicus]
Length = 731
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 55 VGDVTYVEILNDDTGKPR--GSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112
VG+VTYVE+L D GK R G A+VEF+ + ++KA +++ GR L +KE + +
Sbjct: 94 VGEVTYVELLMDAEGKSRVSGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEH 153
Query: 113 GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VF 163
RR M + + P L + I +I+ VF
Sbjct: 154 ARRAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVF 208
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 209 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 268
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 269 LLFDRPMHVKMDERA 283
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 656 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 715
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 716 MKLSGREIDV 725
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 655 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 713
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 714 NGMKLSGREIDVRIDRNA 731
>gi|441629042|ref|XP_003281141.2| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein M [Nomascus leucogenys]
Length = 660
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 108/197 (54%), Gaps = 20/197 (10%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLI-----------NK 161
R M + + A G ++ P L + I + ++
Sbjct: 155 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIYPMHYRAGKTWKHQ 207
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 208 YLVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 267
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 268 GQLLFDRPMHVKMDERA 284
>gi|119589327|gb|EAW68921.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_c [Homo
sapiens]
Length = 730
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 109/195 (55%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK R ++VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRLYSVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 155 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 207
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 208 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 267
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 268 LLFDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
>gi|355755403|gb|EHH59150.1| Heterogeneous nuclear ribonucleoprotein M, partial [Macaca
fascicularis]
Length = 693
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 109/195 (55%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK R ++VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 58 VGEVTYVELLMDAEGKSRLYSVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 117
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 118 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 170
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 171 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 230
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 231 LLFDRPMHVKMDERA 245
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 618 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 677
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 678 MKLSGREIDV 687
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 617 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 675
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 676 NGMKLSGREIDVRIDRNA 693
>gi|355703086|gb|EHH29577.1| Heterogeneous nuclear ribonucleoprotein M, partial [Macaca mulatta]
Length = 692
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 109/195 (55%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK R ++VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 57 VGEVTYVELLMDAEGKSRLYSVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 116
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 117 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 169
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 170 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 229
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 230 LLFDRPMHVKMDERA 244
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 617 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 676
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 677 MKLSGREIDV 686
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 616 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 674
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 675 NGMKLSGREIDVRIDRNA 692
>gi|256078435|ref|XP_002575501.1| rna recognition motif (rrm) domain containing protein [Schistosoma
mansoni]
gi|350645936|emb|CCD59401.1| rna recognition motif (rrm) domain containing protein, putative
[Schistosoma mansoni]
Length = 523
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK-EAVEDKGG 113
+G ++++ + GKP G ++EF++ + +KA+ MHRFE RKLV++ E D
Sbjct: 63 IGFTGFLQLFKKN-GKPNGMGLMEFKTLEGAQKAIETMHRFEVGDRKLVVRQETARDAAR 121
Query: 114 RRNMGGGGGVDRDLSALLQN-NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
+M GG+ D + ++ N + G + +PQ L +GI+ P+ + V+V+NLDY V
Sbjct: 122 LASMEVDGGLLSDSTNPNESVNMAATGPVF--TPQMLGQVGIDGPVTDSVYVSNLDYSVT 179
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+KL++VF+ AGK+ + I D +G SRG G ++F + EAVQ+++M NNQ L +R + V
Sbjct: 180 WQKLKDVFKSAGKILSAVIKTDSEGNSRGVGILKFSNAYEAVQAVNMFNNQILKDRPMRV 239
Query: 233 RMDR 236
++DR
Sbjct: 240 KIDR 243
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDM 571
D+V V NL ++TWQ+L+D F++ G I A IK + +G+++F + + A +A++M
Sbjct: 167 DSVYVSNLDYSVTWQKLKDVFKSAGKILSAVIKTDSEGNSRGVGILKFSNAYEAVQAVNM 226
Query: 572 MD 573
+
Sbjct: 227 FN 228
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 506 RSMNQSSNIER---DTVVVKNLPPTITWQELRDKFRN----CGDIKFAEIKGKGD-IGLV 557
RS ++S N+ R +V+ N+P + WQ+L++ FR G ++ + GK + +GL+
Sbjct: 25 RSRSRSPNVSRVRSKRIVIANIPYDLNWQKLKELFREQIGFTGFLQLFKKNGKPNGMGLM 84
Query: 558 RFDSEWTAKRAIDMMDRTRI-DGKII 582
F + A++AI+ M R + D K++
Sbjct: 85 EFKTLEGAQKAIETMHRFEVGDRKLV 110
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ +AN+ Y ++ +KL+E+FR K+GK G G +EF A ++I +
Sbjct: 40 RIVIANIPYDLNWQKLKELFREQIGFTGFLQLFKKNGKPNGMGLMEFKTLEGAQKAIETM 99
Query: 221 NNQNLFERRITVRMDRVAD 239
+ + +R++ VR + D
Sbjct: 100 HRFEVGDRKLVVRQETARD 118
>gi|256078433|ref|XP_002575500.1| rna recognition motif (rrm) domain containing protein [Schistosoma
mansoni]
gi|350645934|emb|CCD59399.1| rna recognition motif (rrm) domain containing protein, putative
[Schistosoma mansoni]
Length = 582
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK-EAVEDKGG 113
+G ++++ + GKP G ++EF++ + +KA+ MHRFE RKLV++ E D
Sbjct: 62 IGFTGFLQLFKKN-GKPNGMGLMEFKTLEGAQKAIETMHRFEVGDRKLVVRQETARDAAR 120
Query: 114 RRNMGGGGGVDRDLSALLQN-NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
+M GG+ D + ++ N + G + +PQ L +GI+ P+ + V+V+NLDY V
Sbjct: 121 LASMEVDGGLLSDSTNPNESVNMAATGPVF--TPQMLGQVGIDGPVTDSVYVSNLDYSVT 178
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+KL++VF+ AGK+ + I D +G SRG G ++F + EAVQ+++M NNQ L +R + V
Sbjct: 179 WQKLKDVFKSAGKILSAVIKTDSEGNSRGVGILKFSNAYEAVQAVNMFNNQILKDRPMRV 238
Query: 233 RMDR 236
++DR
Sbjct: 239 KIDR 242
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 506 RSMNQSSNIER---DTVVVKNLPPTITWQELRDKFRN----CGDIKFAEIKGKGD-IGLV 557
RS ++S N+ R +V+ N+P + WQ+L++ FR G ++ + GK + +GL+
Sbjct: 24 RSRSRSPNVSRVRSKRIVIANIPYDLNWQKLKELFREQIGFTGFLQLFKKNGKPNGMGLM 83
Query: 558 RFDSEWTAKRAIDMMDRTRI-DGKII 582
F + A++AI+ M R + D K++
Sbjct: 84 EFKTLEGAQKAIETMHRFEVGDRKLV 109
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ +AN+ Y ++ +KL+E+FR K+GK G G +EF A ++I +
Sbjct: 39 RIVIANIPYDLNWQKLKELFREQIGFTGFLQLFKKNGKPNGMGLMEFKTLEGAQKAIETM 98
Query: 221 NNQNLFERRITVRMDRVAD 239
+ + +R++ VR + D
Sbjct: 99 HRFEVGDRKLVVRQETARD 117
>gi|256078431|ref|XP_002575499.1| rna recognition motif (rrm) domain containing protein [Schistosoma
mansoni]
gi|350645935|emb|CCD59400.1| rna recognition motif (rrm) domain containing protein, putative
[Schistosoma mansoni]
Length = 583
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK-EAVEDKGG 113
+G ++++ + GKP G ++EF++ + +KA+ MHRFE RKLV++ E D
Sbjct: 63 IGFTGFLQLFKKN-GKPNGMGLMEFKTLEGAQKAIETMHRFEVGDRKLVVRQETARDAAR 121
Query: 114 RRNMGGGGGVDRDLSALLQN-NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
+M GG+ D + ++ N + G + +PQ L +GI+ P+ + V+V+NLDY V
Sbjct: 122 LASMEVDGGLLSDSTNPNESVNMAATGPVF--TPQMLGQVGIDGPVTDSVYVSNLDYSVT 179
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+KL++VF+ AGK+ + I D +G SRG G ++F + EAVQ+++M NNQ L +R + V
Sbjct: 180 WQKLKDVFKSAGKILSAVIKTDSEGNSRGVGILKFSNAYEAVQAVNMFNNQILKDRPMRV 239
Query: 233 RMDR 236
++DR
Sbjct: 240 KIDR 243
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 506 RSMNQSSNIER---DTVVVKNLPPTITWQELRDKFRN----CGDIKFAEIKGKGD-IGLV 557
RS ++S N+ R +V+ N+P + WQ+L++ FR G ++ + GK + +GL+
Sbjct: 25 RSRSRSPNVSRVRSKRIVIANIPYDLNWQKLKELFREQIGFTGFLQLFKKNGKPNGMGLM 84
Query: 558 RFDSEWTAKRAIDMMDRTRI-DGKII 582
F + A++AI+ M R + D K++
Sbjct: 85 EFKTLEGAQKAIETMHRFEVGDRKLV 110
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ +AN+ Y ++ +KL+E+FR K+GK G G +EF A ++I +
Sbjct: 40 RIVIANIPYDLNWQKLKELFREQIGFTGFLQLFKKNGKPNGMGLMEFKTLEGAQKAIETM 99
Query: 221 NNQNLFERRITVRMDRVAD 239
+ + +R++ VR + D
Sbjct: 100 HRFEVGDRKLVVRQETARD 118
>gi|402577183|gb|EJW71140.1| hypothetical protein WUBG_17956, partial [Wuchereria bancrofti]
Length = 197
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 77/105 (73%), Gaps = 5/105 (4%)
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y V ++ + F LAGKV V++ LDK+G+S+G V+F HP+EAVQ+ISMLNNQ +F
Sbjct: 1 LPYNVQSGRVTDYFSLAGKVTWVDLQLDKEGRSKGMAVVQFTHPIEAVQAISMLNNQRVF 60
Query: 227 ERRITVRMDR---VADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
+R+I V+MD+ + DR +G LP GL+ +GMGLGANGAPL DV
Sbjct: 61 DRQINVKMDKFDPIDDRKEG--ELPVGLRGVGMGLGANGAPLGDV 103
>gi|291233817|ref|XP_002736851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like
[Saccoglossus kowalevskii]
Length = 615
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 85/123 (69%), Gaps = 4/123 (3%)
Query: 140 NTYGLSPQFLESLGINCPLI-NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK 198
N L+PQ L+ LG+ + N +FV+NLDYKV +KL+++FR+AG V +I D++GK
Sbjct: 255 NDMMLNPQILQQLGLQRHEVSNTIFVSNLDYKVTWQKLKDIFRMAGNVVRADIKTDREGK 314
Query: 199 SRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD--RVADRLDGPVRLPEGLKSIGM 256
SRG T++FD P+EAVQ++SM N QNLFER + +RMD +V D+ GP LP GL IG
Sbjct: 315 SRGMATIQFDTPMEAVQALSMFNGQNLFERPMRLRMDKLKVEDQDLGPP-LPSGLSGIGP 373
Query: 257 GLG 259
LG
Sbjct: 374 TLG 376
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
VG+VTYVE+ DD GK +G ++EF+ + V KAV+ MH+ E +GR +V+KE + K
Sbjct: 120 VGEVTYVELFLDDEGKSKGCGVIEFKDKETVDKAVDTMHKHELRGRGIVVKEDTDGK 176
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKGDIGLVRFDSEWTAKRAIDMMD 573
+ V+NLP T TWQ L+DKFR G + +AEIK KG G VRF+S +A+ AI+MM+
Sbjct: 541 IFVRNLPFTYTWQMLKDKFREFGRVMYAEIKMENGRSKG-YGSVRFESPESARTAINMMN 599
Query: 574 RTRIDGKIIDV 584
+ +DG+ I V
Sbjct: 600 GSVLDGRTISV 610
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+++FV NL + + L++ FR G+V EI ++ +G+S+G+G+V F+ P A +I+M
Sbjct: 539 SQIFVRNLPFTYTWQMLKDKFREFGRVMYAEIKME-NGRSKGYGSVRFESPESARTAINM 597
Query: 220 LNNQNLFERRITVRMDRV 237
+N L R I+VRMD+V
Sbjct: 598 MNGSVLDGRTISVRMDKV 615
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+VF++N+ Y++ ++++++FR G+V VE+ LD +GKS+G G +EF +++
Sbjct: 96 NRVFISNVPYELKWQEIKDLFRDKVGEVTYVELFLDDEGKSKGCGVIEFKDKETVDKAVD 155
Query: 219 MLNNQNLFERRITVRMD 235
++ L R I V+ D
Sbjct: 156 TMHKHELRGRGIVVKED 172
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 505 NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLV 557
NR N++ + V + N+P + WQE++D FR+ G++ + E+ K KG G++
Sbjct: 84 NRDRNKTRQRGPNRVFISNVPYELKWQEIKDLFRDKVGEVTYVELFLDDEGKSKG-CGVI 142
Query: 558 RFDSEWTAKRAIDMMDRTRIDGKIIDV 584
F + T +A+D M + + G+ I V
Sbjct: 143 EFKDKETVDKAVDTMHKHELRGRGIVV 169
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK----GKGD-IGLVRFDSEWTAKRAIDM 571
+T+ V NL +TWQ+L+D FR G++ A+IK GK + ++FD+ A +A+ M
Sbjct: 276 NTIFVSNLDYKVTWQKLKDIFRMAGNVVRADIKTDREGKSRGMATIQFDTPMEAVQALSM 335
Query: 572 MD 573
+
Sbjct: 336 FN 337
>gi|148696181|gb|EDL28128.1| myelin basic protein expression factor 2, repressor, isoform CRA_c
[Mus musculus]
Length = 439
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 16/170 (9%)
Query: 76 IVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS 135
+VEF+ + V+KA+ M++++ GR L IKE + + RR + R ++ +++
Sbjct: 1 VVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRAL------QRTGTSFQGSHA 54
Query: 136 SKFGN-TYGLSPQFLESLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGK 185
S G+ L P L + I +I+ +FVANLD+KV KKL+EVF +AG
Sbjct: 55 SDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGT 114
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 115 VKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 164
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 364 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 423
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 424 IKISGREIDV 433
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 362 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 420
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 421 MNGIKISGREIDVRLDRNA 439
>gi|148696179|gb|EDL28126.1| myelin basic protein expression factor 2, repressor, isoform CRA_a
[Mus musculus]
Length = 456
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 16/170 (9%)
Query: 76 IVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS 135
+VEF+ + V+KA+ M++++ GR L IKE + + RR + R ++ +++
Sbjct: 1 VVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRAL------QRTGTSFQGSHA 54
Query: 136 SKFGN-TYGLSPQFLESLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGK 185
S G+ L P L + I +I+ +FVANLD+KV KKL+EVF +AG
Sbjct: 55 SDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGT 114
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 115 VKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 164
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 381 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 440
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 441 IKISGREIDV 450
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 379 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 437
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 438 MNGIKISGREIDVRLDRNA 456
>gi|148696180|gb|EDL28127.1| myelin basic protein expression factor 2, repressor, isoform CRA_b
[Mus musculus]
Length = 415
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 99/165 (60%), Gaps = 6/165 (3%)
Query: 76 IVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNM-----GGGGGVDRDLSAL 130
+VEF+ + V+KA+ M++++ GR L IKE + + RR + G D+ +
Sbjct: 1 VVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASDVGSG 60
Query: 131 LQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVE 190
L N N + P+ + +L L + +FVANLD+KV KKL+EVF +AG V+ +
Sbjct: 61 LVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRAD 119
Query: 191 IALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 120 IKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 164
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 340 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 399
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 400 IKISGREIDV 409
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 338 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 396
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 397 MNGIKISGREIDVRLDRNA 415
>gi|156396829|ref|XP_001637595.1| predicted protein [Nematostella vectensis]
gi|156224708|gb|EDO45532.1| predicted protein [Nematostella vectensis]
Length = 548
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VGDV + EI D+ G+ +G +VEF S + + ++ + + GR L+++ + R
Sbjct: 117 VGDVAFAEIFEDEKGRSKGCGVVEFTSSESAERCISLCNGQDFNGRNLLVRHTRPEDENR 176
Query: 115 RNMGGGGGVDRDLSALLQNNSSK-FGNTYGLSPQFLESLGINCPLINK--------VFVA 165
+ S L N++S+ G T G P L +L N P++ K VFV
Sbjct: 177 MHR----------SRLRGNSASQSVGGTGGGLPSLL-NLSTN-PMMKKSNDPAASTVFVT 224
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV+ +KL++ F+ AG V EI D + KS+G GTV+F+ P+EA+ ++++L+ + L
Sbjct: 225 NLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQFETPMEAMNAVNLLHGKML 284
Query: 226 FERRITVRMDRVA 238
+R + VRMDR A
Sbjct: 285 MDRALRVRMDRAA 297
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VFV NL +K + L++ FR AGKV +I + G+S+G G V F+ EA +IS
Sbjct: 471 QVFVRNLPWKYTWQDLKDKFRPAGKVMRADILTEPSGRSKGCGIVVFETQEEAQMAISAF 530
Query: 221 NNQNLFERRITVRMDRV 237
N + R I VR+DR
Sbjct: 531 NGASFDGREIDVRLDRF 547
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 161 KVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
KVFV+N+ ++ + L++ ++ G V EI D+ G+S+G G VEF A + IS+
Sbjct: 94 KVFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEKGRSKGCGVVEFTSSESAERCISL 153
Query: 220 LNNQNLFERRITVRMDRVAD 239
N Q+ R + VR R D
Sbjct: 154 CNGQDFNGRNLLVRHTRPED 173
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKF-RNCGDIKFAEI----KGKGD-IGL 556
D+NR ++SS V V N+P WQ L+D + GD+ FAEI KG+ G+
Sbjct: 80 DTNRR-SRSSGAPEKKVFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEKGRSKGCGV 138
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
V F S +A+R I + + +G+ + V
Sbjct: 139 VEFTSSESAERCISLCNGQDFNGRNLLV 166
>gi|402904045|ref|XP_003914861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M [Papio anubis]
Length = 626
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 100/184 (54%), Gaps = 18/184 (9%)
Query: 66 DDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDR 125
D GK RG A+VEF+ + ++KA +++ GR L +KE + + RR M +
Sbjct: 2 DAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAM-------Q 54
Query: 126 DLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VFVANLDYKVDEK 174
+ A G ++ P L + I +I+ VFVANLDYKV K
Sbjct: 55 KVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWK 114
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 115 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 174
Query: 235 DRVA 238
D A
Sbjct: 175 DERA 178
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 551 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 610
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 611 MKLSGREIDV 620
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 550 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 608
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 609 NGMKLSGREIDVRIDRNA 626
>gi|536926|gb|AAA78270.1| myelin gene expression factor, partial [Mus musculus]
Length = 435
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 16/163 (9%)
Query: 83 DLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGN-T 141
+ V+KA+ M++++ GR L IKE + + RR + R ++ +++S G+
Sbjct: 4 EFVKKALETMNKYDLSGRPLNIKEDPDGENARRAL------QRTGTSFQGSHASDVGSGL 57
Query: 142 YGLSPQFLESLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGKVENVEIA 192
L P L + I +I+ +FVANLD+KV KKL+EVF +AG V+ +I
Sbjct: 58 VNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIK 117
Query: 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 118 EDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 160
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF G + FAEIK GK G VRF+S +A++A +M+
Sbjct: 360 IFVRNLPFDLTWQKLKEKFSQLGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 419
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 420 IKISGREIDV 429
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 358 NQIFVRNLPFDLTWQKLKEKFSQLGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 416
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 417 MNGIKISGREIDVRLDRNA 435
>gi|119597745|gb|EAW77339.1| myelin expression factor 2, isoform CRA_c [Homo sapiens]
gi|119597746|gb|EAW77340.1| myelin expression factor 2, isoform CRA_c [Homo sapiens]
gi|119597748|gb|EAW77342.1| myelin expression factor 2, isoform CRA_c [Homo sapiens]
Length = 440
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 92 MHRFETKGRKLVIKEAVEDKGGRRNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSP 146
M++++ GR L IKE + + RR + GG GG D+ + L N N + P
Sbjct: 1 MNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPP 60
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+ + +L L + +FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV
Sbjct: 61 EVISNLQAG-RLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVT 119
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMD 235
F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 120 FEQAIEAVQAISMFNGQFLFDRPMHVKMD 148
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 363 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 422
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 423 NGIKISGREIDV 434
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 363 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 421
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 422 MNGIKISGREIDVRLDRNA 440
>gi|119597747|gb|EAW77341.1| myelin expression factor 2, isoform CRA_d [Homo sapiens]
Length = 416
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 92 MHRFETKGRKLVIKEAVEDKGGRRNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSP 146
M++++ GR L IKE + + RR + GG GG D+ + L N N + P
Sbjct: 1 MNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPP 60
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+ + +L L + +FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG GTV
Sbjct: 61 EVISNLQAG-RLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVT 119
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMD 235
F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 120 FEQAIEAVQAISMFNGQFLFDRPMHVKMD 148
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 341 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 400
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 401 IKISGREIDV 410
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 339 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 397
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 398 MNGIKISGREIDVRLDRNA 416
>gi|62089046|dbj|BAD92970.1| heterogeneous nuclear ribonucleoprotein M isoform a variant [Homo
sapiens]
Length = 615
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 70 KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSA 129
K +G A+VEF+ + ++KA +++ GR L +KE + + RR M + + A
Sbjct: 10 KKKGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAM-------QKVMA 62
Query: 130 LLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VFVANLDYKVDEKKLRE 178
G ++ P L + I +I+ VFVANLDYKV KKL+E
Sbjct: 63 TTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKE 122
Query: 179 VFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
VF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+MD A
Sbjct: 123 VFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 182
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 540 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 599
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 600 MKLSGREIDV 609
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 539 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 597
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 598 NGMKLSGREIDVRIDRNA 615
>gi|313228790|emb|CBY17941.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 117/252 (46%), Gaps = 57/252 (22%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR--------------K 101
G V + +I+ + G+ G VEF++ + +KAV K+H + GR +
Sbjct: 64 GPVIFADIIKNRDGRSAGFGHVEFKTLEDAQKAVEKLHGMDLDGRDIRVDLDINEDQLQR 123
Query: 102 LVIKEAVEDKGGRRNMG--------GGGGVDRDLS-----ALLQNNSSKFGNTYG----- 143
+ K+ ++ + R+ G G RD +NS N YG
Sbjct: 124 MCRKQGLDSRSDRQQQWDSQRAERYGRGPPRRDAQYGGPGHFPGDNSGYDDNRYGPLRSV 183
Query: 144 ----------------------LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFR 181
LSP ++++G P+ +FV NLDYKVDE K++EVF
Sbjct: 184 APVHQVPLINGRPLTEYPGLSDLSPSVMDAIGAG-PVGKNIFVRNLDYKVDEDKIKEVFG 242
Query: 182 LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241
LAG VE V + D+DGKSRG G V F P+EAV+++ M + Q L+ R + +MDR +
Sbjct: 243 LAGTVEEVSLTKDQDGKSRGMGVVSFSQPMEAVKAVVMFHTQALYGRAMYCKMDRKNNEQ 302
Query: 242 DGP--VRLPEGL 251
P +LP+GL
Sbjct: 303 VKPEKKKLPDGL 314
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
K+ + NL Y V+ KL+++ + AG V +I ++DG+S GFG VEF +A +++
Sbjct: 40 KILLKNLPYSVNWMKLKDICKEHAGPVIFADIIKNRDGRSAGFGHVEFKTLEDAQKAVEK 99
Query: 220 LNNQNLFERRITVRMDRVADRL 241
L+ +L R I V +D D+L
Sbjct: 100 LHGMDLDGRDIRVDLDINEDQL 121
>gi|405978215|gb|EKC42625.1| Myelin expression factor 2 [Crassostrea gigas]
Length = 468
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 31/124 (25%)
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
++PQ L+ LG++ P+ N VFV+N+DYKV KKL++VF+LAG V+ VE+ KDGKSRG
Sbjct: 103 ITPQLLQQLGVDGPVTNTVFVSNIDYKVTWKKLKDVFKLAGNVQRVEVMQSKDGKSRGMA 162
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGA 263
TV FD +EA+Q+IS GLKSIGMGLG G
Sbjct: 163 TVSFDTQLEALQAIS-------------------------------GLKSIGMGLGLGGV 191
Query: 264 PLQD 267
P+Q+
Sbjct: 192 PIQN 195
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 11/94 (11%)
Query: 505 NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK----GDIGLVRFD 560
+R ++S+ + TV V+NLP ++ WQ+L++KF+ D++FAEIK + GLVRF
Sbjct: 374 DRDSDRSTRPDNCTVCVRNLPYSLKWQDLKEKFKAVADVRFAEIKMENGRSAGWGLVRFG 433
Query: 561 SEWTAKRAI-------DMMDRTRIDGKIIDVTFF 587
+ A+RAI +M+R+RIDG+ +DV +
Sbjct: 434 NPDDAQRAICILPFKNSLMNRSRIDGREVDVKMY 467
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
NC V V NL Y + + L+E F+ V EI ++ +G+S G+G V F +P +A
Sbjct: 385 NCT----VCVRNLPYSLKWQDLKEKFKAVADVRFAEIKME-NGRSAGWGLVRFGNPDDAQ 439
Query: 215 QSI-------SMLNNQNLFERRITVRMDR 236
++I S++N + R + V+M R
Sbjct: 440 RAICILPFKNSLMNRSRIDGREVDVKMYR 468
>gi|402586540|gb|EJW80478.1| hypothetical protein WUBG_08614, partial [Wuchereria bancrofti]
Length = 299
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V +VE+L D GK +G+A+VEF+ + V++ V+ +HR+ R L KE + R
Sbjct: 146 GEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDALHRYPMNDRLLTAKEIRDPVAFFR 205
Query: 116 NMGGGGGVDRDLSAL----------LQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
+ GVD L+ L +N + TYGLSP FL L I PL N+VFV+
Sbjct: 206 KVKEDTGVDF-LNGLHGGTATASLDTRNRQEEQFETYGLSPAFLRQLHITGPLTNRVFVS 264
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR 200
NL Y V ++ + F LAGKV V++ LDK+G+S+
Sbjct: 265 NLPYNVQSGRVTDYFSLAGKVTWVDLQLDKEGRSK 299
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 162 VFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
V++AN+ Y V +L+++ R AG+V VE+ D+ GKS+G VEF + + L
Sbjct: 123 VYIANIPYDVRWMELKDLVREKAGEVNFVELLEDRKGKSKGAAVVEFREKESVQRCVDAL 182
Query: 221 NNQNLFERRITVR 233
+ + +R +T +
Sbjct: 183 HRYPMNDRLLTAK 195
>gi|431900154|gb|ELK08068.1| Heterogeneous nuclear ribonucleoprotein M [Pteropus alecto]
Length = 686
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLS 128
G P +VEF+ + ++KA +++ GR L +KE + + RR M +
Sbjct: 32 GAPVPKGVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAM-----QKVMAT 86
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVANLDYKVDEKKLREV 179
+ P L + I +I+ VFVANLDYKV KKL+EV
Sbjct: 87 TGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEV 146
Query: 180 FRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
F +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+MD A
Sbjct: 147 FSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 205
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 611 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 670
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 671 MKLSGREIDV 680
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 610 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 668
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 669 NGMKLSGREIDVRIDRNA 686
>gi|149023162|gb|EDL80056.1| rCG26626, isoform CRA_a [Rattus norvegicus]
Length = 440
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 16/154 (10%)
Query: 92 MHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGN-TYGLSPQFLE 150
M++++ GR L IKE + + RR + R ++ +++S G+ L P +
Sbjct: 1 MNKYDLSGRPLNIKEDPDGENARRAL------QRTGTSFQGSHASDVGSGLVNLPPSIVN 54
Query: 151 SLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
+ I +IN +FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG
Sbjct: 55 NPNIPPEVINNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRG 114
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 115 MGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 148
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 365 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 424
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 425 IKISGREIDV 434
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 363 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 421
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 422 MNGIKISGREIDVRLDRNA 440
>gi|149023163|gb|EDL80057.1| rCG26626, isoform CRA_b [Rattus norvegicus]
Length = 423
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 16/154 (10%)
Query: 92 MHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGN-TYGLSPQFLE 150
M++++ GR L IKE + + RR + R ++ +++S G+ L P +
Sbjct: 1 MNKYDLSGRPLNIKEDPDGENARRAL------QRTGTSFQGSHASDVGSGLVNLPPSIVN 54
Query: 151 SLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
+ I +IN +FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG
Sbjct: 55 NPNIPPEVINNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRG 114
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 115 MGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 148
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 348 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 407
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 408 IKISGREIDV 417
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 346 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 404
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 405 MNGIKISGREIDVRLDRNA 423
>gi|355692695|gb|EHH27298.1| Myelin expression factor 2, partial [Macaca mulatta]
Length = 512
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 94/181 (51%), Gaps = 30/181 (16%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK R PD + A++ GG
Sbjct: 70 VGEVTYVELFKDAEGKSR--------DPDGEN-----------------ARRALQRTGGS 104
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
GG D+ + L N N + P+ + +L L + +FVANLD+KV K
Sbjct: 105 FP----GGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDFKVGWK 159
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 160 KLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKM 219
Query: 235 D 235
D
Sbjct: 220 D 220
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 437 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 496
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 497 IKISGREIDV 506
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 435 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 493
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 494 MNGIKISGREIDVRLDRNA 512
>gi|149023164|gb|EDL80058.1| rCG26626, isoform CRA_c [Rattus norvegicus]
Length = 399
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 16/154 (10%)
Query: 92 MHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGN-TYGLSPQFLE 150
M++++ GR L IKE + + RR + R ++ +++S G+ L P +
Sbjct: 1 MNKYDLSGRPLNIKEDPDGENARR------ALQRTGTSFQGSHASDVGSGLVNLPPSIVN 54
Query: 151 SLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
+ I +IN +FVANLD+KV KKL+EVF +AG V+ +I DKDGKSRG
Sbjct: 55 NPNIPPEVINNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRG 114
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
GTV F+ +EAVQ+ISM N Q LF+R + V+MD
Sbjct: 115 MGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMD 148
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 324 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESPESAEKACRIMNG 383
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 384 IKISGREIDV 393
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ P A ++ +
Sbjct: 322 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRI 380
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 381 MNGIKISGREIDVRLDRNA 399
>gi|148678255|gb|EDL10202.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_b [Mus
musculus]
Length = 527
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 35/163 (21%)
Query: 76 IVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS 135
+VEF+ + ++KA +++ GR L +KE + + RR M +
Sbjct: 2 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAM---------------QKA 46
Query: 136 SKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK 195
+ G+T VFVANLDYKV KKL+EVF +AG V +I DK
Sbjct: 47 GRLGST--------------------VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 86
Query: 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
DGKSRG G V F+ +EAVQ+ISM N Q LF+R + V+MD A
Sbjct: 87 DGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 129
>gi|627551|pir||A54770 N-acetylglucosamine-specific receptor 1 precursor - human
Length = 496
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 59/81 (72%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L + VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+I
Sbjct: 42 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 101
Query: 218 SMLNNQNLFERRITVRMDRVA 238
SM N Q LF+R + V+MD A
Sbjct: 102 SMFNGQLLFDRPMHVKMDERA 122
>gi|344251989|gb|EGW08093.1| Myelin expression factor 2 [Cricetulus griseus]
Length = 359
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 94/181 (51%), Gaps = 30/181 (16%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK R PD R+ + + +G
Sbjct: 79 VGEVTYVELFKDAEGKSR--------DPD------------GENARRALQRTGTSFQGSH 118
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ G G V+ S L N + P+ + +L L + +FVANLD+KV K
Sbjct: 119 ASDVGSGLVNLPPSIL---------NNPNIPPEVISNLQAG-RLGSTIFVANLDFKVGWK 168
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 169 KLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKM 228
Query: 235 D 235
D
Sbjct: 229 D 229
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 180 FRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
F G V EI ++ +GKS+G GTV F+ P A ++ ++N + R I VR+DR A
Sbjct: 302 FGRLGHVMFAEIKME-NGKSKGCGTVRFESPESAEKACRIMNGIKISGREIDVRLDRNA 359
>gi|47225694|emb|CAG08037.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV FD P+EAVQ++SM
Sbjct: 124 NTVFVANLDYKVGWKKLKEVFGMAGIVIRTDILEDKDGKSRGMGTVTFDSPLEAVQAVSM 183
Query: 220 LNNQNLFERRITVRMD 235
N Q LF R + V++D
Sbjct: 184 FNGQLLFNRVMHVKLD 199
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 30/141 (21%)
Query: 455 PSTDYSRNASNMYGNSRYGSGG-------NEMDYGGGSGQASIQSGGYGNPRAGLDSNRS 507
PS R +S M R GSGG +++D G G G + +GG GN R G
Sbjct: 496 PSGGLDRMSSGM---DRMGSGGVGQFDRSSDLDRGFG-GNSFRGTGGPGNVRKGC----- 546
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEW 563
+ V+NLP TW+ L+D F G +++A+IK GK G+VRFDS
Sbjct: 547 ----------QIFVRNLPFDFTWKNLKDTFNAYGMVQYADIKMENGKSKGCGVVRFDSPE 596
Query: 564 TAKRAIDMMDRTRIDGKIIDV 584
TA+R M+ R++G+ IDV
Sbjct: 597 TAERVCQTMNGYRLNGREIDV 617
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V+ +I ++ +GKS+G G V FD P A + +
Sbjct: 547 QIFVRNLPFDFTWKNLKDTFNAYGMVQYADIKME-NGKSKGCGVVRFDSPETAERVCQTM 605
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 606 NGYRLNGREIDVRIDRNA 623
>gi|159164267|pdb|2DO0|A Chain A, Solution Structure Of The Rna Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein M
Length = 114
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 59/81 (72%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L + VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+I
Sbjct: 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73
Query: 218 SMLNNQNLFERRITVRMDRVA 238
SM N Q LF+R + V+MD A
Sbjct: 74 SMFNGQLLFDRPMHVKMDERA 94
>gi|301621484|ref|XP_002940083.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Xenopus
(Silurana) tropicalis]
Length = 725
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 58/78 (74%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L + VFVANLDY V KKL+EVF +AG V ++ DKDGKSRG GTV ++ P+EAVQ+I
Sbjct: 222 LGSTVFVANLDYSVGWKKLKEVFGIAGTVVRADVLEDKDGKSRGIGTVTYEQPIEAVQAI 281
Query: 218 SMLNNQNLFERRITVRMD 235
SM N Q LF+R + V+MD
Sbjct: 282 SMFNGQPLFDRPMMVKMD 299
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NL TW+ L+D+F CG + +A+IK GK G+VRF+S A+RA MM+
Sbjct: 650 IFVRNLSFDCTWKMLKDQFSECGHVVYADIKTENGKSKGCGVVRFESPEVAERACRMMNG 709
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 710 AKLGGREIDV 719
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 141 TYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR 200
T G+ P + G C ++FV NL + K L++ F G V +I + +GKS+
Sbjct: 635 TAGVRPAAVPRKG--C----QIFVRNLSFDCTWKMLKDQFSECGHVVYADIKTE-NGKSK 687
Query: 201 GFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
G G V F+ P A ++ M+N L R I VRMDR A
Sbjct: 688 GCGVVRFESPEVAERACRMMNGAKLGGREIDVRMDRNA 725
>gi|1200089|emb|CAA50897.1| ORF [Homo sapiens]
Length = 570
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 46 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 105
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 106 GQLLFDRPMHVKMDERA 122
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 495 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 554
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 555 MKLSGREIDV 564
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 494 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 552
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 553 NGMKLSGREIDVRIDRNA 570
>gi|56789218|gb|AAH88317.1| Heterogeneous nuclear ribonucleoprotein M [Rattus norvegicus]
Length = 535
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 11 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 70
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 71 GQLLFDRPMHVKMDERA 87
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 460 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 519
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 520 MKLSGREIDV 529
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 459 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 517
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 518 NGMKLSGREIDVRIDRNA 535
>gi|149031664|gb|EDL86627.1| rCG37572, isoform CRA_b [Rattus norvegicus]
Length = 610
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 86 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 145
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 146 GQLLFDRPMHVKMDERA 162
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 535 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 594
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 595 MKLSGREIDVRI 606
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 534 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 592
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 593 NGMKLSGREIDVRIDRNA 610
>gi|149031665|gb|EDL86628.1| rCG37572, isoform CRA_c [Rattus norvegicus]
Length = 571
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 47 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 106
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 107 GQLLFDRPMHVKMDERA 123
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 496 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 555
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 556 MKLSGREIDVRI 567
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 495 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 553
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 554 NGMKLSGREIDVRIDRNA 571
>gi|119589328|gb|EAW68922.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_d [Homo
sapiens]
Length = 610
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 86 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 145
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 146 GQLLFDRPMHVKMDERA 162
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 535 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 594
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 595 MKLSGREIDVRI 606
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 534 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 592
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 593 NGMKLSGREIDVRIDRNA 610
>gi|375298754|ref|NP_001243560.1| heterogeneous nuclear ribonucleoprotein M [Danio rerio]
Length = 686
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV FD P+EAVQ++SM N
Sbjct: 206 IFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFN 265
Query: 222 NQNLFERRITVRMD 235
Q LF R + V++D
Sbjct: 266 GQLLFNRVMHVKLD 279
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+D F +CG +++A+IK GK G+VRFD+ TA+RA M+
Sbjct: 611 IFVRNLPFDFTWKMLKDTFNSCGMVQYADIKMENGKSKGCGVVRFDNPETAERACRTMNG 670
Query: 575 TRIDGKIIDV 584
R++G+ IDV
Sbjct: 671 YRLNGREIDV 680
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V+ +I ++ +GKS+G G V FD+P A ++ +
Sbjct: 610 QIFVRNLPFDFTWKMLKDTFNSCGMVQYADIKME-NGKSKGCGVVRFDNPETAERACRTM 668
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 669 NGYRLNGREIDVRIDRNA 686
>gi|119589329|gb|EAW68923.1| heterogeneous nuclear ribonucleoprotein M, isoform CRA_e [Homo
sapiens]
Length = 571
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 47 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 106
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 107 GQLLFDRPMHVKMDERA 123
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 496 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 555
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 556 MKLSGREIDVRI 567
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 495 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 553
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 554 NGMKLSGREIDVRIDRNA 571
>gi|158455026|gb|AAI03345.2| HNRPM protein [Bos taurus]
Length = 549
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 43 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 102
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 103 GQLLFDRPMHVKMDERA 119
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 474 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 533
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 534 MKLSGREIDVRI 545
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 473 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 531
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 532 NGMKLSGREIDVRIDRNA 549
>gi|344244031|gb|EGW00135.1| Heterogeneous nuclear ribonucleoprotein M [Cricetulus griseus]
Length = 574
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 56/77 (72%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG EI DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 50 VFVANLDYKVGWKKLKEVFSMAGGGGRAEILGDKDGKSRGIGTVTFEQSIEAVQAISMFN 109
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 110 GQLLFDRPMHVKMDERA 126
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 499 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 558
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 559 MKLSGREIDV 568
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 498 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 556
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 557 NGMKLSGREIDVRIDRNA 574
>gi|134024837|gb|AAI34826.1| LOC100049142 protein [Xenopus laevis]
Length = 739
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 56/74 (75%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDY V KKL+EVF +AG V ++ DKDGKSRG GTV ++ P+EAVQ+ISM N
Sbjct: 240 VFVANLDYSVGWKKLKEVFGIAGTVLRADVLEDKDGKSRGIGTVTYEQPIEAVQAISMFN 299
Query: 222 NQNLFERRITVRMD 235
Q LF+R + V+MD
Sbjct: 300 GQPLFDRPMMVKMD 313
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NL TW+ L+D+F CG + +A+IK GK G+VRF+S A+RA MM+
Sbjct: 664 IFVRNLSFDCTWKMLKDQFGECGHVVYADIKTENGKSKGCGVVRFESPEVAERACRMMNG 723
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 724 AKLGGREIDV 733
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I + +GKS+G G V F+ P A ++ M+
Sbjct: 663 QIFVRNLSFDCTWKMLKDQFGECGHVVYADIKTE-NGKSKGCGVVRFESPEVAERACRMM 721
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VRMDR A
Sbjct: 722 NGAKLGGREIDVRMDRNA 739
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L DD GK RG A VEF+ + ++KAV +++ GR L ++E + R
Sbjct: 92 VGEVTYVELLMDDEGKSRGCAAVEFKLEESMKKAVQVLNKHVFNGRPLKVREDPDGDRSR 151
Query: 115 R 115
R
Sbjct: 152 R 152
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F++N+ + V + L+++ + G+V VE+ +D +GKSRG VEF +++ +
Sbjct: 69 RAFISNIPFDVKWQALKDLVKEKVGEVTYVELLMDDEGKSRGCAAVEFKLEESMKKAVQV 128
Query: 220 LNNQNLFERRITVRMDRVADR 240
LN R + VR D DR
Sbjct: 129 LNKHVFNGRPLKVREDPDGDR 149
>gi|355732561|gb|AES10743.1| heteroproteinous nuclear ribonucleoprotein M-like protein [Mustela
putorius furo]
Length = 89
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N
Sbjct: 8 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 67
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 68 GQLLFDRPMHVKMDERA 84
>gi|432853551|ref|XP_004067763.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Oryzias
latipes]
Length = 689
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ P+EAVQ++SM N
Sbjct: 220 VFVANLDYKVGWKKLKEVFGMAGMVVRTDILEDKDGKSRGMGTVTFEMPIEAVQAVSMFN 279
Query: 222 NQNLFERRITVRMD 235
Q LF R + V++D
Sbjct: 280 GQLLFNRTMHVKLD 293
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 96/214 (44%), Gaps = 49/214 (22%)
Query: 418 GLGQSNILSGMAAYSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNM----------Y 467
G G + GM G+ TSS+ ++ ST+ R +SNM
Sbjct: 472 GSGMDRLGPGMDRLGPGLDRMTSSMDRMGPTGFDRLG-STNLDRMSSNMDFSSPMGMDRM 530
Query: 468 GNS---RYGSGGNEMDYGGG-------------SGQASIQSGGYGNP--RAGLDSNRSMN 509
GN+ R GSG + M GG SG + SGG G R+G D NR
Sbjct: 531 GNTGLDRMGSGFDRMGSTGGIDRFPPGGLDRMNSGMDRMGSGGVGGQFDRSG-DVNRGFG 589
Query: 510 QSS--------------NIERDT-VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GK 551
+S N+ + + V+NLP TW+ L+D F CG +++A+IK GK
Sbjct: 590 GNSFGGAGPAGPGTGGGNLRKGCQIFVRNLPFDFTWKNLKDTFNTCGMVQYADIKMENGK 649
Query: 552 GD-IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
G+VRFDS TA+RA M+ R++G+ IDV
Sbjct: 650 SKGCGVVRFDSPETAERACRTMNGYRLNGREIDV 683
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V+ +I ++ +GKS+G G V FD P A ++ +
Sbjct: 613 QIFVRNLPFDFTWKNLKDTFNTCGMVQYADIKME-NGKSKGCGVVRFDSPETAERACRTM 671
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 672 NGYRLNGREIDVRIDRNA 689
>gi|403294667|ref|XP_003938291.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Saimiri
boliviensis boliviensis]
Length = 539
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 56/77 (72%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V I DKDGKSRG GTV F+ +EAVQ++SM N
Sbjct: 51 VFVANLDYKVGWKKLKEVFSMAGVVVRANILEDKDGKSRGIGTVTFEQSIEAVQAVSMFN 110
Query: 222 NQNLFERRITVRMDRVA 238
Q LF+R + V+MD A
Sbjct: 111 GQLLFDRPMHVKMDERA 127
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 464 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 523
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 524 MKLSGREIDV 533
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 463 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 521
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 522 NGMKLSGREIDVRIDRNA 539
>gi|344248244|gb|EGW04348.1| Heterogeneous nuclear ribonucleoprotein M [Cricetulus griseus]
Length = 199
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 79/153 (51%), Gaps = 35/153 (22%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 78 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 137
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M G + G+T VFVANLDYKV K
Sbjct: 138 RAMQKAG---------------RLGST--------------------VFVANLDYKVGWK 162
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
KL+EVF +AG V +I DKDGKSRG GT F
Sbjct: 163 KLKEVFSMAGVVVRADILEDKDGKSRGIGTCNF 195
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 55 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 114
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 115 LNKHSLSGRPLKVKED 130
>gi|213512325|ref|NP_001133640.1| Heterogeneous nuclear ribonucleoprotein M [Salmo salar]
gi|209154780|gb|ACI33622.1| Heterogeneous nuclear ribonucleoprotein M [Salmo salar]
Length = 668
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 55/74 (74%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFVANLDYKV KKL+EVF +AG V +I DKDG SRG GTV FD P+EAVQ++SM N
Sbjct: 211 VFVANLDYKVGWKKLKEVFGMAGVVVRTDILEDKDGNSRGMGTVTFDMPIEAVQAVSMFN 270
Query: 222 NQNLFERRITVRMD 235
Q LF R + V++D
Sbjct: 271 GQLLFNRVMHVKLD 284
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+D F CG +++A+IK GK G+VRFD+ TA+RA M+
Sbjct: 593 IFVRNLPYDFTWKVLKDTFNTCGMVQYADIKTENGKSKGCGVVRFDNPETAERACRTMNG 652
Query: 575 TRIDGKIIDV 584
R++G+ IDV
Sbjct: 653 YRLNGREIDV 662
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y K L++ F G V+ +I + +GKS+G G V FD+P A ++ +
Sbjct: 592 QIFVRNLPYDFTWKVLKDTFNTCGMVQYADIKTE-NGKSKGCGVVRFDNPETAERACRTM 650
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 651 NGYRLNGREIDVRIDRNA 668
>gi|195038145|ref|XP_001990521.1| GH19397 [Drosophila grimshawi]
gi|193894717|gb|EDV93583.1| GH19397 [Drosophila grimshawi]
Length = 662
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576
DT+++KN+P + TWQ LRDKFR+ GD+KFAEI+G D+G+VRF E A+ AI +MD +R
Sbjct: 593 DTIIIKNVPLSCTWQTLRDKFRDVGDVKFAEIRGN-DLGVVRFFKERDAELAIALMDGSR 651
Query: 577 IDGKIIDVTFF 587
+DG+ I VT+F
Sbjct: 652 LDGRTIKVTYF 662
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG + YV++ +D++GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+K ED G +
Sbjct: 88 VGSIEYVQLFHDESGKARGCGIVEFKDPENVQKAMEKMNRYELNGRELVVK---EDHGEQ 144
Query: 115 RNMGG 119
R+ G
Sbjct: 145 RDQYG 149
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 63 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARGCGIVEFKDPENV 118
Query: 214 VQSISMLNNQNLFERRITVRMDRVADR 240
+++ +N L R + V+ D R
Sbjct: 119 QKAMEKMNRYELNGRELVVKEDHGEQR 145
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRN-CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V + N+P WQ+L+D FR G I++ ++ K +G G+V F ++A++
Sbjct: 66 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFHDESGKARG-CGIVEFKDPENVQKAMEK 124
Query: 572 MDRTRIDGK 580
M+R ++G+
Sbjct: 125 MNRYELNGR 133
>gi|224009309|ref|XP_002293613.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971013|gb|EED89349.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 189
Score = 91.7 bits (226), Expect = 9e-16, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ GDV +I+ G+ +G IVE+ SP+ +AV +++ E GR++ ++E E
Sbjct: 19 HMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELNNSELSGRQIFVREDREQ 78
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G N GGGG NN +Y E ++FV NL ++
Sbjct: 79 TTGSNNRHGGGGF---------NNQRSHNTSYMQGSPAEEGC--------QLFVGNLSWE 121
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
++L++ FR G+V+ E+A DG+ RGFG V F +A +I LN + R +
Sbjct: 122 TGWRELKDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPL 181
Query: 231 TVRMDRVA 238
VR+D A
Sbjct: 182 DVRVDNKA 189
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL + + L++ + G V +I DG+S+G G VE+ P EA +++ L
Sbjct: 1 RVYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEEL 60
Query: 221 NNQNLFERRITVRMDR 236
NN L R+I VR DR
Sbjct: 61 NNSELSGRQIFVREDR 76
Score = 48.1 bits (113), Expect = 0.013, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 493 GGYGNPRAGLDSNRSMNQSSNIERD-TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK 551
GG+ N R+ N S Q S E + V NL W+EL+D FR CG++ AE+
Sbjct: 89 GGFNNQRS---HNTSYMQGSPAEEGCQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEG 145
Query: 552 GD-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
D GLVRF S A+ AI ++ G+ +DV
Sbjct: 146 NDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPLDV 183
>gi|449690993|ref|XP_002155395.2| PREDICTED: myelin expression factor 2-like, partial [Hydra
magnipapillata]
Length = 567
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 25/212 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED- 110
+ +G V +VEI D G+ +G +VEF D +A+ ++ E GRKL ++E + D
Sbjct: 105 MKKIGAVEHVEIFTDGEGRSKGCGVVEFSHSDDAAQAIKELDGGELAGRKLRLREDIMDD 164
Query: 111 -------KGGRRNMGGGGGVDRDLSALLQNN----------SSKFGNTYGLSPQFLESLG 153
K + + D AL QN +G L+ L
Sbjct: 165 TTYKEQLKTQKDKSQAIKHRENDRLALSQNTSSLGLNLGGGLGGLSALFGAQNHQLQILT 224
Query: 154 I-----NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
+ + + VFV+NLDY++ +KL+++FR G V+IA +D +S+GFG+V F+
Sbjct: 225 MLNSKGGESINSSVFVSNLDYELTWQKLKDLFRKVGNCVRVDIAQGEDNRSKGFGSVVFE 284
Query: 209 HPVEAVQSISMLNNQNL--FERRITVRMDRVA 238
P+EA+ +I+M N + R+++VR+DR A
Sbjct: 285 TPMEALSAIAMFNGTEVGPHRRQMSVRLDRSA 316
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V+NL+Y L++ + G VE+VEI D +G+S+G G VEF H +A Q+I L
Sbjct: 86 RVYVSNLNYDTKWMNLKDFMKKIGAVEHVEIFTDGEGRSKGCGVVEFSHSDDAAQAIKEL 145
Query: 221 NNQNLFERRITVRMDRVAD 239
+ L R++ +R D + D
Sbjct: 146 DGGELAGRKLRLREDIMDD 164
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VF+ NL + + ++L++ FR AGK+ +I DG+S+G GTV ++ EA +++++
Sbjct: 490 RVFIRNLPFSLRWQELKDKFREAGKIVRADIMKMDDGRSKGCGTVTYETTAEANRAVTLF 549
Query: 221 NNQNLFERRITVRMD 235
N L R + V++D
Sbjct: 550 NGYRLDGRPMEVKID 564
>gi|344236233|gb|EGV92336.1| Heterogeneous nuclear ribonucleoprotein M [Cricetulus griseus]
Length = 216
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 35/153 (22%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFRMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R + + + G+T VFVANLDYKV K
Sbjct: 155 R---------------ARQKAGRLGST--------------------VFVANLDYKVGWK 179
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
KL+EVF +AG V + DKDGKSRG GT F
Sbjct: 180 KLKEVFSMAGVVVRADFLDDKDGKSRGIGTCNF 212
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 72 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFRMEESMKKAAEV 131
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 132 LNKHSLSGRPLKVKED 147
>gi|299115572|emb|CBN75775.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 555
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ T G+V +++ D +G+ +G IVE+++P ++A+N + E KGR + ++E
Sbjct: 68 HMRTAGEVVRADVMRDASGRSKGCGIVEYRTPAEAQEAINTLLDTELKGRLIFVRE---- 123
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
DR+ +A++ + +V+V NL +
Sbjct: 124 -------------DREAAAVVGGGGGPPMGGGPRGSGNQNA---------RVYVGNLAWD 161
Query: 171 VDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
V + L++ R L G+V ++ D+ G+SRG G VE+ P +A Q+I LNN L R
Sbjct: 162 VAWQDLKDHMRGLGGEVIRADVMTDQGGRSRGCGIVEYAEPEQATQAIEQLNNSELKNRM 221
Query: 230 ITVRMDR 236
I VR DR
Sbjct: 222 IFVREDR 228
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ TVG V + ++L D G+ +G IVE++ +A+ +++ GR + ++E E
Sbjct: 333 HMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELNNTALGGRPIFVREDREQ 392
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+ R+ GGG + + N G +++V NL ++
Sbjct: 393 QNPRQRQRGGGRGEMANGGGGRGGGGGGENLAG----------------RQLYVGNLSFE 436
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
L++ FR AG+VE ++ +D +S+G+GTV F EA +I LN L R+I
Sbjct: 437 TTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQSAIQELNGTELGSRQI 496
Query: 231 TVRMD 235
VR D
Sbjct: 497 EVRED 501
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
+G+ I +V+V NL ++ + + L++ R AG+V ++ D G+S+G G VE+ P
Sbjct: 41 VGVMTTGITRVYVGNLSWETEWQDLKDHMRTAGEVVRADVMRDASGRSKGCGIVEYRTPA 100
Query: 212 EAVQSISMLNNQNLFERRITVRMDRVA 238
EA ++I+ L + L R I VR DR A
Sbjct: 101 EAQEAINTLLDTELKGRLIFVREDREA 127
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+++V NL + V+ ++L++ R GKV + ++ D DG+S+G G VE++ A ++I
Sbjct: 314 NRIYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRE 373
Query: 220 LNNQNLFERRITVRMDR 236
LNN L R I VR DR
Sbjct: 374 LNNTALGGRPIFVREDR 390
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NL T+ WQEL+D R G + A++ GD G+V ++ A RAI ++
Sbjct: 316 IYVGNLAWTVEWQELKDHMRTVGKVVHADVLQDGDGRSKGCGIVEYEDIRGANRAIRELN 375
Query: 574 RTRIDGKIIDV 584
T + G+ I V
Sbjct: 376 NTALGGRPIFV 386
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKR 567
N+ + V NL TW +L+D FR G+++ A++ G G VRF ++ A+
Sbjct: 422 NLAGRQLYVGNLSFETTWADLKDHFRTAGEVERADVMMDGSRRSKGWGTVRFRTQEEAQS 481
Query: 568 AIDMMDRTRIDGKIIDV 584
AI ++ T + + I+V
Sbjct: 482 AIQELNGTELGSRQIEV 498
>gi|431896025|gb|ELK05443.1| Myelin expression factor 2 [Pteropus alecto]
Length = 351
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 30/166 (18%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK R PD G + A++ GG
Sbjct: 203 VGEVTYVELFKDAEGKSR--------DPD---------------GEN--ARRALQRTGG- 236
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
GG DL + L N N + P+ + +L L + +FVANLD+KV K
Sbjct: 237 ---SFPGGHVPDLGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDFKVGWK 292
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
KL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+I +L
Sbjct: 293 KLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAICIL 338
>gi|392588971|gb|EIW78302.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 399
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 11/193 (5%)
Query: 54 TVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG- 112
G+V + E+L TG +G IVEF S + ++A+ ++ GR + I+E E++
Sbjct: 8 AAGEVLFAEVLITPTGVSKGCGIVEFASQEDAQRAIRELSEVPLLGRPVFIREDRENESR 67
Query: 113 -GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G + G G+ L + P G + N+++V NL Y+
Sbjct: 68 FGATPVPGKIGMAMAGQGLNATPPPR--------PPHHNYFGTSANPGNQLYVGNLPYQA 119
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ L+++FR AG + +I + DG+ +G GTV F+ P +A Q+ISM N + + R +
Sbjct: 120 GWQDLKDLFRTAGNIIRADINIGADGRPKGSGTVVFETPKDANQAISMYNGFDWYGRILE 179
Query: 232 VRMDRVADRLDGP 244
VR DR A L GP
Sbjct: 180 VREDRFAG-LSGP 191
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V + ++L + G+ +G +VE+ + + KA+ +++ E +GR + ++E E
Sbjct: 197 HMKKAGTVVHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREP 256
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+GG +S + ++ G+ G +++V NL ++
Sbjct: 257 EGG------------SISKFAKRAAAPRGSGEG----------------RQLYVGNLPWE 288
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ ++L+++FR G VE +IA DG+SRGFG + + + +A Q+I LN + R I
Sbjct: 289 TNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLI 348
Query: 231 TVRMDR 236
VR+D+
Sbjct: 349 EVRLDK 354
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 39/186 (20%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V +L + G+ +G IV +++ + + A+ ++ E GRK+ ++E
Sbjct: 108 HMQAAGPVELATVL-ESNGRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVRE---- 162
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
DR+ + S G +V+V NL +
Sbjct: 163 -------------DREAQPV-----SAVKPKRGF----------------RVYVGNLSWN 188
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
V ++L++ + AG V + ++ + +G+S+G G VE+ EA ++I+ LNN L R I
Sbjct: 189 VKWQELKDHMKKAGTVVHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLI 248
Query: 231 TVRMDR 236
VR DR
Sbjct: 249 FVREDR 254
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 150 ESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDH 209
++ + C +V+V NL + + + L++ + AG VE + L+ +G+S+G G V ++
Sbjct: 83 QAAAVGC----RVYVGNLSWSIKWQDLKDHMQAAGPVE-LATVLESNGRSKGCGIVTYET 137
Query: 210 PVEAVQSISMLNNQNLFERRITVRMDRVA 238
A +I+ LN+ L R+I VR DR A
Sbjct: 138 EEAAQNAIATLNDTELGGRKIFVREDREA 166
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP WQ+L+D FR GD++ A+I D G++R+ + A +AI+ ++
Sbjct: 280 LYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLN 339
Query: 574 RTRIDGKIIDVTF 586
I+G++I+V
Sbjct: 340 GLEIEGRLIEVRL 352
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL + WQEL+D + G + A++ + KG GLV + ++ A +AI +
Sbjct: 180 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEPNGRSKG-CGLVEYATQEEAAKAIAEL 238
Query: 573 DRTRIDGKIIDV 584
+ T ++G++I V
Sbjct: 239 NNTELEGRLIFV 250
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIG 555
G D + M Q++ + V V NL +I WQ+L+D + G ++ A + + KG G
Sbjct: 74 GEDDDVDMEQAAAVG-CRVYVGNLSWSIKWQDLKDHMQAAGPVELATVLESNGRSKG-CG 131
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V +++E A+ AI ++ T + G+ I V
Sbjct: 132 IVTYETEEAAQNAIATLNDTELGGRKIFV 160
>gi|449281941|gb|EMC88882.1| Heterogeneous nuclear ribonucleoprotein M [Columba livia]
Length = 516
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 12/158 (7%)
Query: 75 AIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNN 134
++VEF+ + ++KA +++ GR L +KE + + RR M V +
Sbjct: 10 SVVEFKMEESMKKAAEVLNKHSLGGRPLKVKEDPDGEHARRAMQK---VMATAGGMGIGP 66
Query: 135 SSKFGNTYGLSPQFLESLGINCPLINK---------VFVANLDYKVDEKKLREVFRLAGK 185
+ P L + I +I+ VFVANLDYKV KKL+EVF +AG
Sbjct: 67 GPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGV 126
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V +I DKDGKSRG GTV F+ +EAVQ+I +L +
Sbjct: 127 VVRADILEDKDGKSRGIGTVTFEQAIEAVQAICILEER 164
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 478 EMDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKF 537
+M+ G +G + GG G P AG+ R Q + V+NLP TW+ L+DKF
Sbjct: 456 DMERGNFAGNFAGSLGGTGGPAAGV--ARKACQ--------IFVRNLPFDFTWKMLKDKF 505
Query: 538 RNCGDIKF 545
CG + +
Sbjct: 506 NECGKLLY 513
>gi|328771467|gb|EGF81507.1| hypothetical protein BATDEDRAFT_87457 [Batrachochytrium
dendrobatidis JAM81]
Length = 557
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 21/206 (10%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
++ G+V + +I+ D G+ G +VE+ SPD ++A+ ++H GR L+++E E
Sbjct: 168 YMRKCGNVLFADIIMRD-GRSLGCGVVEYSSPDDAQRAIRELHDSNHMGRTLLVREDREA 226
Query: 111 KGGR-------RNMGGGGGVDRDLSA--LLQNNSSKFGNTYGLSPQFLESLGINCPLI-- 159
R N G DRD + +N+ +++ + +
Sbjct: 227 DSRRPSGKTRSTNRDSNRGPDRDSGSDRYSRNDRTRYDDRSSRGRSGRSYRDNDDRDDRR 286
Query: 160 ---------NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
K+FV NL + V+ K L+++FR V E+ D DG+S+G GTVEF+ P
Sbjct: 287 RVEGRDDRDKKIFVGNLPFVVNWKDLKDLFRKVASVVRAEVFEDHDGRSKGVGTVEFETP 346
Query: 211 VEAVQSISMLNNQNLFERRITVRMDR 236
A +ISM + RR+ VR DR
Sbjct: 347 QLARNAISMFDGYEWHGRRLEVREDR 372
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
NC +V+V NL + + L++ R G V +I + +DG+S G G VE+ P +A
Sbjct: 148 NC----RVYVGNLAFGCGWQDLKDYMRKCGNVLFADIIM-RDGRSLGCGVVEYSSPDDAQ 202
Query: 215 QSISMLNNQNLFERRITVRMDRVAD 239
++I L++ N R + VR DR AD
Sbjct: 203 RAIRELHDSNHMGRTLLVREDREAD 227
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP + W++L+D FR + AE+ + KG +G V F++ A+ AI M
Sbjct: 298 IFVGNLPFVVNWKDLKDLFRKVASVVRAEVFEDHDGRSKG-VGTVEFETPQLARNAISMF 356
Query: 573 DRTRIDGKIIDV 584
D G+ ++V
Sbjct: 357 DGYEWHGRRLEV 368
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI---KGKG-DIGLVRFDS 561
R ++ SS+ V V NL WQ+L+D R CG++ FA+I G+ G+V + S
Sbjct: 138 RHLDSSSSNRNCRVYVGNLAFGCGWQDLKDYMRKCGNVLFADIIMRDGRSLGCGVVEYSS 197
Query: 562 EWTAKRAI 569
A+RAI
Sbjct: 198 PDDAQRAI 205
>gi|393212131|gb|EJC97633.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 381
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 8/191 (4%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE--AVEDKGG 113
G+V + E+L TG +G IVEF + + ++A+ ++ GR + I+E E + G
Sbjct: 10 GEVLFAEVLVTPTGISKGCGIVEFATQEDAQRAIRELSEVPLLGRPVFIREDRETEARFG 69
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
+ G G ++ Q +++ YG S G P N+++V NL Y+
Sbjct: 70 ATPVPGKIG----MAMAGQGFNAQPPPRYGGSGGGGGGGGGGNPG-NQLYVGNLPYQAGW 124
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
+ L+++FR AG + +I + DG+++G GTV F+ P +A Q+I+M NN + R + VR
Sbjct: 125 QDLKDLFRTAGNIVRADINIGADGRAKGSGTVIFETPKDAQQAITMYNNYEWYGRVLEVR 184
Query: 234 MDRVADRLDGP 244
DR A L GP
Sbjct: 185 EDRYAG-LSGP 194
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP WQ+L+D FR G+I A+I + KG G V F++ A++AI M
Sbjct: 113 LYVGNLPYQAGWQDLKDLFRTAGNIVRADINIGADGRAKGS-GTVIFETPKDAQQAITMY 171
Query: 573 DRTRIDGKIIDV 584
+ G++++V
Sbjct: 172 NNYEWYGRVLEV 183
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 182 LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241
LAG+V E+ + G S+G G VEF +A ++I L+ L R + +R DR +
Sbjct: 8 LAGEVLFAEVLVTPTGISKGCGIVEFATQEDAQRAIRELSEVPLLGRPVFIREDRETEAR 67
Query: 242 DGPVRLPEGLKSIGMGLGANG 262
G +P IGM + G
Sbjct: 68 FGATPVP---GKIGMAMAGQG 85
>gi|323448546|gb|EGB04443.1| hypothetical protein AURANDRAFT_32583 [Aureococcus anophagefferens]
Length = 240
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H G V + ++ + G+ +G IVEF+S D A+ +H E GR + ++E ED
Sbjct: 44 HFRQCGTVVHASVMEERPGRSKGCGIVEFESADEAALAIETLHDVELDGRPVQVREDRED 103
Query: 111 K--------GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ GG+R + ++ G + +V
Sbjct: 104 RDLAPAKAPGGKRPAVQAPAWGEPRGGGGGGEIEVGRRQRKAAQ---DADGDVIRVARRV 160
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NL + + L++ FR G V + ++ ++ G+S+G+G VEF+ P EAV +I LN+
Sbjct: 161 YVGNLAWGTSWQDLKDHFRQCGSVVHAKVMEERPGRSKGWGIVEFEAPEEAVAAIEQLND 220
Query: 223 QNLFERRITVRMDR 236
+L R I VR DR
Sbjct: 221 SDLDGRPIQVREDR 234
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+ +VFV NL ++ + L++ FR G V + + ++ G+S+G G VEF+ EA +I
Sbjct: 23 VARRVFVGNLSWQTSWQDLKDHFRQCGTVVHASVMEERPGRSKGCGIVEFESADEAALAI 82
Query: 218 SMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
L++ L R + VR DR DR P + P G +
Sbjct: 83 ETLHDVELDGRPVQVREDR-EDRDLAPAKAPGGKR 116
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL +WQ+L+D FR CG + A + + KG G+V F+S A AI+ +
Sbjct: 27 VFVGNLSWQTSWQDLKDHFRQCGTVVHASVMEERPGRSKG-CGIVEFESADEAALAIETL 85
Query: 573 DRTRIDGKIIDV 584
+DG+ + V
Sbjct: 86 HDVELDGRPVQV 97
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H G V + +++ + G+ +G IVEF++P+ A+ +++ + GR + ++E ED
Sbjct: 177 HFRQCGSVVHAKVMEERPGRSKGWGIVEFEAPEEAVAAIEQLNDSDLDGRPIQVREDRED 236
Query: 111 K 111
+
Sbjct: 237 R 237
>gi|238883218|gb|EEQ46856.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 465
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 21/179 (11%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK------EAVEDKGGRRNMGG--- 119
G+ RG A VEF S D VR+A+NK R+E +GR++ ++ E D G R G
Sbjct: 164 GRSRGMATVEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYD 223
Query: 120 --GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLR 177
GG DR S Q SS+ + Y P G +VF+ NL + V+ + L+
Sbjct: 224 SRSGGRDR-YSDRYQ--SSRRNDNYA-PPAPPSKPGT------EVFIGNLPFSVNWQALK 273
Query: 178 EVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
++ R AG+V ++ LD G SRGFGTV F+ EA +++ M + R++ R R
Sbjct: 274 DLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDTRPGR 332
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ G RG V F + + KAV +E +GRKL +
Sbjct: 276 MRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDTRPG---- 331
Query: 112 GGRRNMGGGGGVDRD-LSALLQNNSSKFGN-----TYGLSPQFLESLGINCPLINKVFVA 165
R+ G G +RD + S +G+ + +F + + + + ++VA
Sbjct: 332 ---RSTGSSSGYERDSYRSSDTTEKSSYGDRSKSAVVNKNSEFTDGVTADGEKSDTIYVA 388
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
NL + + L ++F G+ EI DG+ G V+F+ A +IS LNN
Sbjct: 389 NLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAISQLNN 445
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D LY + TVG T EI D G+P G+A+V+F+ DL A+++++ + GR L
Sbjct: 396 DDDLYDL--FETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAISQLNNYLYGGRNL 453
Query: 103 VIKEA 107
I A
Sbjct: 454 QISYA 458
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP ++ WQ L+D R+ G++ A+++ +G G V F++E A +A++M
Sbjct: 258 VFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRG-FGTVVFNTEEEAAKAVEMF 316
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 317 QGYEIEGRKLDT 328
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N +F+ N+ + + + ++F+ + +I +K G+SRG TVEF+ + ++I+
Sbjct: 128 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 186
Query: 220 LNNQNLFERRITVRMD 235
+ R I VR D
Sbjct: 187 FDRYEYRGREIFVRQD 202
>gi|170108674|ref|XP_001885545.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639421|gb|EDR03692.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 568
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 10/192 (5%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE-- 106
+ + G+V + E+L TG +G IVEF S + ++AV ++ GR + I+E
Sbjct: 181 MEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASQEDAQRAVRELSEQPLLGRPVFIREDR 240
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E + G + G G+ L + P G N+++V N
Sbjct: 241 ETEARFGATPVPGKIGMAMAGQGLHAAPPPR--------PPSHNYFGTQANPGNQLYVGN 292
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y+ + L+++FR AG + +I + DG+ +G GTV F+ P +A Q+ISM + + +
Sbjct: 293 LPYQAGWQDLKDLFRTAGNIIRADINIGADGRPKGSGTVVFETPKDAQQAISMYHGFDWY 352
Query: 227 ERRITVRMDRVA 238
R + VR DR A
Sbjct: 353 GRTLEVREDRYA 364
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y+V + L E R AG+V E+ + G S+G G VEF +A +++
Sbjct: 164 NRVYVGNLSYEVKYRDLMEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASQEDAQRAVRE 223
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPE--GLKSIGMGLGANGAPLQDVANWL 272
L+ Q L R + +R DR + G +P G+ G GL A P N+
Sbjct: 224 LSEQPLLGRPVFIREDRETEARFGATPVPGKIGMAMAGQGLHAAPPPRPPSHNYF 278
>gi|344234704|gb|EGV66572.1| hypothetical protein CANTEDRAFT_117619 [Candida tenuis ATCC 10573]
Length = 472
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLS 128
G+ RG A VEF S D V+ A+ K +E +GR++ +++ +R
Sbjct: 162 GRSRGMATVEFSSKDEVKSAIEKFDHYEYRGRQIFVRQDYPPPEEKR------------- 208
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLI----NKVFVANLDYKVDEKKLREVFRLAG 184
++ KF N S + S PL+ ++FV NL Y ++ + L+++ R AG
Sbjct: 209 VSMEQPGEKFSNRTPPSRERYTSSVKQSPLVPEPGTEIFVGNLPYSMNWQALKDLMREAG 268
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239
+VE ++ LD+ GKS G+GTV F P EA +++ + + R+++ R R +
Sbjct: 269 EVERADVRLDQKGKSMGYGTVVFKTPEEAKLALNTFADYEIEGRKLSTRPGRTHE 323
>gi|448537900|ref|XP_003871410.1| Gbp2 single-strand telomeric DNA-binding protein [Candida
orthopsilosis Co 90-125]
gi|380355767|emb|CCG25285.1| Gbp2 single-strand telomeric DNA-binding protein [Candida
orthopsilosis]
Length = 452
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 57 DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
D+ +I+ + G+ RG A VEF+S D V KA++K RF GR++ ++ +R+
Sbjct: 147 DIVRADIVTN-RGRSRGMATVEFKSRDDVTKAIDKYDRFSYHGREIFVRRDYP-PPEKRD 204
Query: 117 MGGGGGVDRDLSALLQNNSSKFGNTY-----------------GLSPQFLESLGINCPLI 159
G G DR S++G++Y G +
Sbjct: 205 FGSGRSFDR--------GGSRYGDSYYGRDSSRGGYGSAGGRGGYARSDYRPPLPPTTPG 256
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+VFV NL + + + L+++ R AG V ++ LD G+SRGFGTV FD P EA ++ M
Sbjct: 257 TEVFVGNLPFSITWQALKDIMRKAGSVARADVRLDDMGRSRGFGTVVFDTPEEANAAVEM 316
Query: 220 LNNQNLFERRITVRMDRVA 238
+ RR+ R R +
Sbjct: 317 FQGYEIEGRRLDTRHGRTS 335
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 12/187 (6%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V ++ DD G+ RG V F +P+ AV +E +GR+L +
Sbjct: 277 MRKAGSVARADVRLDDMGRSRGFGTVVFDTPEEANAAVEMFQGYEIEGRRLDTRH----- 331
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL-GINCPLINKVFVANLDYK 170
G N+ G + SA ++S+ G + +F E + G + +FV NL +
Sbjct: 332 GRTSNVAATG----EFSAAGASSSAPIGGK--KNTEFTEGVTGDGEEPNDTIFVENLPFS 385
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
L ++F G+V EI +DG++ G V+F+ A S++ LN RR+
Sbjct: 386 TQNDDLFDLFETIGRVTKAEIQYQEDGRASGNAVVQFELVESATASLNELNGYEYGGRRL 445
Query: 231 TVRMDRV 237
+ R+
Sbjct: 446 KISYKRL 452
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP +ITWQ L+D R G + A++ + +G G V FD+ A A++M
Sbjct: 259 VFVGNLPFSITWQALKDIMRKAGSVARADVRLDDMGRSRG-FGTVVFDTPEEANAAVEMF 317
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 318 QGYEIEGRRLDT 329
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 6/187 (3%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V + ++L + G +G +VEF +PD + A++ ++ E +GR + ++E E
Sbjct: 177 HMKQAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVREDREP 236
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTY-GLSPQFLESLGINCPLINKVFVANLDY 169
GG + R +++ + + + G P+ S + + +V+V NL +
Sbjct: 237 DGGSIT-----SIARRGGRGGRSSGGRGNSRFAGRGPREGNSGHSHSSDVKQVYVGNLPW 291
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ L +F+ AG VE E+ DG+SRGFG V+F EA +I LN RR
Sbjct: 292 DTTSRNLENLFQSAGDVERAEVVEFPDGRSRGFGIVKFKSSSEAQCAIDELNGTEHNGRR 351
Query: 230 ITVRMDR 236
+ VR+D+
Sbjct: 352 LEVRLDK 358
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 40/189 (21%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ + GDV + I+ + G+ +G IV + + + A+ ++ E GRK+ ++E
Sbjct: 89 HMRSAGDVEHAVIM-EVGGRSKGCGIVTYATESEAQNAIETLNDTELDGRKIFVRE---- 143
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
DR+ +A Q + C +V+V NL +
Sbjct: 144 -------------DREENASAQPRAK------------------GC----RVYVGNLPWT 168
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
V + L++ + AG V + ++ + G S+G G VEF P EA +I MLN+ L R I
Sbjct: 169 VKWQALKDHMKQAGTVIHADVLEEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNI 228
Query: 231 TVRMDRVAD 239
VR DR D
Sbjct: 229 FVREDREPD 237
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV + L++ R AG VE+ + ++ G+S+G G V + EA +I L
Sbjct: 71 RVYVGNLSWKVKWQDLKDHMRSAGDVEHA-VIMEVGGRSKGCGIVTYATESEAQNAIETL 129
Query: 221 NNQNLFERRITVRMDR 236
N+ L R+I VR DR
Sbjct: 130 NDTELDGRKIFVREDR 145
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 478 EMDYGGGSGQASIQSGGYGNPRAG-----------LDSNRSMNQSSNIERDT---VVVKN 523
E++ G + + SGG+ P A D N ++ +++E T V V N
Sbjct: 17 EIEQGRRKQENKLNSGGHDAPHAAGNAQNTHQDDHDDENSDGSEDADMEVVTGRRVYVGN 76
Query: 524 LPPTITWQELRDKFRNCGDIKFA---EIKGKGD-IGLVRFDSEWTAKRAIDMMDRTRIDG 579
L + WQ+L+D R+ GD++ A E+ G+ G+V + +E A+ AI+ ++ T +DG
Sbjct: 77 LSWKVKWQDLKDHMRSAGDVEHAVIMEVGGRSKGCGIVTYATESEAQNAIETLNDTELDG 136
Query: 580 KII 582
+ I
Sbjct: 137 RKI 139
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP T+ WQ L+D + G + A++ KG GLV F + A+ AIDM+
Sbjct: 160 VYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEAGGWSKG-CGLVEFSTPDEAQNAIDML 218
Query: 573 DRTRIDGKII 582
+ T ++G+ I
Sbjct: 219 NDTELEGRNI 228
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 498 PRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGK 551
PR G N + SS++++ V V NLP T + L + F++ GD++ AE+ + +
Sbjct: 268 PREG---NSGHSHSSDVKQ--VYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFPDGRSR 322
Query: 552 GDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
G G+V+F S A+ AID ++ T +G+ ++V
Sbjct: 323 G-FGIVKFKSSSEAQCAIDELNGTEHNGRRLEVRL 356
>gi|389747840|gb|EIM89018.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 540
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVEF S + +AV ++ GR + I+E
Sbjct: 158 MEFMRGAGEVLFAEVLITPTGISKGCGIVEFASHEDAMRAVKELSESPLLGRPVFIREDR 217
Query: 109 EDKG--GRRNMGGGGGVDRDLSALLQNNSSK--FGNTYGLSPQFLESLGINCPLINKVFV 164
E++ G + G G+ L + F NT+G G N+++V
Sbjct: 218 ENESRFGATPVPGKIGMAMAGQGLHAAPPPRPAFHNTFG---------GAGHNPGNQLYV 268
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
NL Y+ + L+++FR AG + +I + DG+ +G GTV ++ +A +I+M N N
Sbjct: 269 GNLPYQAGWQDLKDLFREAGNIVRADINIGADGRPKGSGTVIYETAKDAQSAINMFNGHN 328
Query: 225 LFERRITVRMDRVADRLDGP 244
+ R + VR DR A L GP
Sbjct: 329 WYGRMLEVREDRFAG-LSGP 347
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF +A++++
Sbjct: 141 NRVYVGNLSYDVKYRDLMEFMRGAGEVLFAEVLITPTGISKGCGIVEFASHEDAMRAVKE 200
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
L+ L R + +R DR + G +P + G G + AP
Sbjct: 201 LSESPLLGRPVFIREDRENESRFGATPVPGKIGMAMAGQGLHAAP 245
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ VG+V EILN G +G AI+E+ + + R A+ + + GR + I+E
Sbjct: 97 MGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIRE----- 151
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ +A +FG++ G + ++FV NL Y V
Sbjct: 152 ------------DREQNA-------RFGSSSVSPSASSN--GKDSEPDRQLFVGNLPYNV 190
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ L+++FR AG V +I ++++G+SRG G V EA+ +I ML+N + R +
Sbjct: 191 RWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLE 250
Query: 232 VRMDRVADRLDGP 244
VR+DR A P
Sbjct: 251 VRLDRFAHHKSKP 263
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 11/207 (5%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK--EAVEDKGG 113
G V +I + G+ RG IV S A+ +H + GR L ++ K
Sbjct: 203 GSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKSK 262
Query: 114 RRNMGGGGGVDRDLSALLQ-NNSSKFGNTYGLSPQFLESLGINC----PLINKVFVANLD 168
+ G G A +Q SS + G + Q +E L + P + ++V NL
Sbjct: 263 PYSTHGNG---YTFPAEMQMTTSSTYLPMLGANTQ-VEDLVYHAYPHGPCSDCIYVGNLP 318
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ ++ L ++F G V IA + G+S+GFG V+F++ +A SI LN R
Sbjct: 319 WATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGR 378
Query: 229 RITVRMDRVADRLDGPVRLPEGLKSIG 255
+ + A L + GL S+
Sbjct: 379 PLQLSYAHYATPLPAVPTVLSGLPSVA 405
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y+V +L+E G V N EI +G S+G +E+ EA +I L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 221 NNQNLFERRITVRMDR 236
+NQ R + +R DR
Sbjct: 138 SNQKFMGRLVYIREDR 153
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP + WQ+L+D FR G + A+I+ + IG+V S A AI M+
Sbjct: 181 LFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLH 240
Query: 574 RTRIDGKIIDV 584
T G+ ++V
Sbjct: 241 NTDFMGRTLEV 251
>gi|384248197|gb|EIE21682.1| G-strand telomere binding protein 1 [Coccomyxa subellipsoidea
C-169]
Length = 222
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+G V Y ++ DD G+ +G IVEF++P+ AVN + E GRK++++E ED+
Sbjct: 35 FREIGTVVYANVVRDDAGRSKGWGIVEFETPEEAVAAVNTFNGEEIAGRKILVREDREDR 94
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC-----PLIN----KV 162
+ G++R A S + G + Q E +N PL +V
Sbjct: 95 DV-KQYNKDHGIERPEGARPPRRSRR-----GTAQQSQEGAKLNGDHASEPLQEPSGLQV 148
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
V + +K ++ L +F ++ + KDG+SRG+GTV FD +A +++ L++
Sbjct: 149 VVQGIPWKYRDEDLSALFEDCAPAVEAKVVISKDGRSRGYGTVRFDSREDADKAVRELHS 208
Query: 223 QNLFERRITVRMDR 236
L R +TV++D+
Sbjct: 209 TELEGRTLTVKIDK 222
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ FV NL +K + L++ FR G V + D G+S+G+G VEF+ P EAV +++
Sbjct: 15 KRCFVGNLAWKTSWQDLKDKFREIGTVVYANVVRDDAGRSKGWGIVEFETPEEAVAAVNT 74
Query: 220 LNNQNLFERRITVRMDRVADR------LDGPVRLPEGLK 252
N + + R+I VR DR DR D + PEG +
Sbjct: 75 FNGEEIAGRKILVREDR-EDRDVKQYNKDHGIERPEGAR 112
>gi|449017556|dbj|BAM80958.1| similar to Gbp1p protein [Cyanidioschyzon merolae strain 10D]
Length = 293
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 27/198 (13%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G+V + E+ + G+ RG +VE+ + A+ ++ E +GR + ++E
Sbjct: 113 HMRKAGEVVFAEVFTERDGRSRGCGVVEYATEADSANAIATLNDTELQGRLIFVRE---- 168
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP----QFLESLGINCPLI------N 160
DR+ + L+ N + +G + + E+ G N P
Sbjct: 169 -------------DREPNQPLRRNKTSASGFHGANATTGNRHHEARGRNQPPSFPSDKGR 215
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
K+ V NL Y + L++ FR G + +I +D++G+SRG GT+ F+ +A ++I M+
Sbjct: 216 KIIVWNLPYSYTWQDLKDEFRACGNIIRADILIDQEGRSRGAGTIVFESEEDAQRAIQMM 275
Query: 221 NNQNLFERRITVRMDRVA 238
+ L R + VR+D+ A
Sbjct: 276 DRAELAGRIVDVRLDKYA 293
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 10/88 (11%)
Query: 506 RSMNQSSNIERDT---VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGL 556
R NQ + D ++V NLP + TWQ+L+D+FR CG+I A+I + +G G
Sbjct: 201 RGRNQPPSFPSDKGRKIIVWNLPYSYTWQDLKDEFRACGNIIRADILIDQEGRSRG-AGT 259
Query: 557 VRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+ F+SE A+RAI MMDR + G+I+DV
Sbjct: 260 IVFESEEDAQRAIQMMDRAELAGRIVDV 287
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL + V + L++ R AG+V E+ ++DG+SRG G VE+ ++ +I+ L
Sbjct: 95 RVYVGNLAWSVSWQALKDHMRKAGEVVFAEVFTERDGRSRGCGVVEYATEADSANAIATL 154
Query: 221 NNQNLFERRITVRMDR 236
N+ L R I VR DR
Sbjct: 155 NDTELQGRLIFVREDR 170
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
V V NL +++WQ L+D R G++ FAE+ + D G+V + +E + AI ++
Sbjct: 96 VYVGNLAWSVSWQALKDHMRKAGEVVFAEVFTERDGRSRGCGVVEYATEADSANAIATLN 155
Query: 574 RTRIDGKIIDV 584
T + G++I V
Sbjct: 156 DTELQGRLIFV 166
>gi|301115672|ref|XP_002905565.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110354|gb|EEY68406.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 322
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 28/167 (16%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ T G V + ++L G+ +G +VE+ + D KA+ +++ E +GR + ++E E
Sbjct: 182 HMKTAGTVVHADVLELANGRSKGCGLVEYATEDEAAKAIAELNNTELEGRLIFVREDREP 241
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+GG +S + S+ GN G +++V NL +
Sbjct: 242 EGG------------SISKFAKRASAPRGNGEG----------------RQLYVGNLPWD 273
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+ ++L+++FR G VE +IA DG+SRGFG + + + V+A+Q+I
Sbjct: 274 TNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAVDALQAI 320
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V +L + G+ +G IV + + + + A+ ++ E GRK+ ++E
Sbjct: 93 HMQAAGPVDLATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVRE---- 147
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
DR+ ++K Y +V+V NL +
Sbjct: 148 -------------DREAQP---TATTKPKRGY------------------RVYVGNLSWN 173
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
V ++L++ + AG V + ++ +G+S+G G VE+ EA ++I+ LNN L R I
Sbjct: 174 VKWQELKDHMKTAGTVVHADVLELANGRSKGCGLVEYATEDEAAKAIAELNNTELEGRLI 233
Query: 231 TVRMDR 236
VR DR
Sbjct: 234 FVREDR 239
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V+V NL + + + L++ + AG V ++ L+ +G+S+G G V + A +I+
Sbjct: 74 SRVYVGNLSWSIKGQDLKDHMQAAGPV-DLATVLEWNGRSKGCGIVTYATEEAAQNAIAT 132
Query: 220 LNNQNLFERRITVRMDRVA 238
LN+ L R+I VR DR A
Sbjct: 133 LNDTELGGRKIFVREDREA 151
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL + WQEL+D + G + A++ + KG GLV + +E A +AI +
Sbjct: 165 VYVGNLSWNVKWQELKDHMKTAGTVVHADVLELANGRSKG-CGLVEYATEDEAAKAIAEL 223
Query: 573 DRTRIDGKIIDV 584
+ T ++G++I V
Sbjct: 224 NNTELEGRLIFV 235
>gi|357610524|gb|EHJ67022.1| hypothetical protein KGM_12451 [Danaus plexippus]
Length = 748
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 9/182 (4%)
Query: 140 NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKS 199
N + + +L SLGI P+ N V V N ++ D+ +L+EV LAG+V +
Sbjct: 230 NDFHIKEDYLRSLGILPPITNWVDVTN--FRCDKSELKEVLELAGRVVMCSVVTSL---- 283
Query: 200 RGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
+ + HP+EAVQ++SMLN Q + +++ V ++R + LP+GL S+G GLG
Sbjct: 284 HRYANAMYSHPLEAVQAVSMLNGQIFYGKKLKVTINRSPNVK---TLLPKGLVSVGPGLG 340
Query: 260 ANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASK 319
G P++D+ + + + S I ++ ++L R L D + + + +S+
Sbjct: 341 KFGKPVRDLPDQYKRFIQGQNSAIDASLFQPDLLNRIGVTLDRDINYSRSSGTPYSQSSQ 400
Query: 320 TD 321
TD
Sbjct: 401 TD 402
>gi|241957041|ref|XP_002421240.1| poly(A+) RNA-binding protein, putative; single-strand telomeric
DNA-binding protein, putative [Candida dubliniensis
CD36]
gi|223644584|emb|CAX40572.1| poly(A+) RNA-binding protein, putative [Candida dubliniensis CD36]
Length = 460
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK------EAVEDKGGRRNMG---- 118
G+ RG A VEF S D VR+A+NK RFE +GR++ ++ E D G R G
Sbjct: 161 GRSRGMATVEFNSKDDVREAINKFDRFEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYD 220
Query: 119 --GGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKL 176
GGG D + N + P +VF+ NL + ++ + L
Sbjct: 221 SRSGGGRYNDRYQSSRRNDNYAPPPPPSKPG------------TEVFIGNLPFSINWQAL 268
Query: 177 REVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
+++ R AG+V ++ LD G SRGFGTV F EA +++ M + R++ R R
Sbjct: 269 KDLMRDAGEVIRADVRLDNYGNSRGFGTVVFSTEEEAAKAVEMFQGYEIEGRKLDTRPGR 328
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 12/176 (6%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ G RG V F + + KAV +E +GRKL + +
Sbjct: 272 MRDAGEVIRADVRLDNYGNSRGFGTVVFSTEEEAAKAVEMFQGYEIEGRKL------DTR 325
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGN-----TYGLSPQFLESLGINCPLINKVFVAN 166
GR G D SA + SS +G+ + +F + + + + ++VAN
Sbjct: 326 PGRSTASSGYERDSYRSADTTDRSS-YGDRSKSSVSNKNSEFTDGVTADGEKSDTIYVAN 384
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
L + + L E+F G+ EI DG+ G V+F+ A +IS LNN
Sbjct: 385 LPFATQDDDLYELFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAISQLNN 440
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D LY++ TVG T EI D G+P G+A+V+F+ DL A+++++ + GR L
Sbjct: 391 DDDLYEL--FETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAISQLNNYLYGGRNL 448
Query: 103 VIKEAVEDKG 112
I A +G
Sbjct: 449 QISYAKRPEG 458
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP +I WQ L+D R+ G++ A+++ +G G V F +E A +A++M
Sbjct: 254 VFIGNLPFSINWQALKDLMRDAGEVIRADVRLDNYGNSRG-FGTVVFSTEEEAAKAVEMF 312
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 313 QGYEIEGRKLDT 324
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N +F+ N+ + + + ++F+ + +I +K G+SRG TVEF+ + ++I+
Sbjct: 125 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 183
Query: 220 LNNQNLFERRITVRMD 235
+ R I VR D
Sbjct: 184 FDRFEYRGREIFVRQD 199
>gi|403338343|gb|EJY68407.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 371
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 8 TELVEQIAHQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDD 67
+ + E IA + P+ +R + GA +V V D + H+ G V +I DD
Sbjct: 113 SRMNEDIAKR-MPL-EREQQGAGYKVYVTNLAFATDWRSLK-DHMKKCGFVVRADIFEDD 169
Query: 68 TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED----------------- 110
G+ +G+ +VEF++ + +A+ +++ + GR + +KE E
Sbjct: 170 KGRSKGTGVVEFRNQNDAIRAIREVNSTQLDGRTVYVKEYHEQGSRSRAQQSINLPQDGR 229
Query: 111 ---KGGRRNMGGG-GGVDR--DLSALLQNNSSK-FGNTYGLSPQFL-------ESLGINC 156
+ GR N+ G G + D L +N S+ N +PQ +C
Sbjct: 230 YNIRDGRYNIRDGRDGYQKSMDFIPLNRNQRSRSRSNPKRFNPQNRFDGRDRERDRQQSC 289
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
L +++ NL Y V +LR+ F GKV N +IA D+ G S+G+G ++F+ + A +
Sbjct: 290 QLSKSIYIGNLPYSVTADQLRDAFLAFGKVLNAQIARDEKGGSKGYGLIKFESSLNAENA 349
Query: 217 ISMLNNQNLFERRITVRMDRV 237
I ++ R++TVR DR
Sbjct: 350 IKAMDQAKFNGRQVTVRFDRA 370
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 501 GLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK-----GKGDIG 555
G D R QS + + ++ + NLP ++T +LRD F G + A+I G G
Sbjct: 278 GRDRERDRQQSCQLSK-SIYIGNLPYSVTADQLRDAFLAFGKVLNAQIARDEKGGSKGYG 336
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
L++F+S A+ AI MD+ + +G+ + V F
Sbjct: 337 LIKFESSLNAENAIKAMDQAKFNGRQVTVRF 367
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKGD-IGLVRFDSEWTAKRAIDMMD 573
V V NL W+ L+D + CG + A+I KG+ G+V F ++ A RAI ++
Sbjct: 136 VYVTNLAFATDWRSLKDHMKKCGFVVRADIFEDDKGRSKGTGVVEFRNQNDAIRAIREVN 195
Query: 574 RTRIDGKIIDVTFF 587
T++DG+ + V +
Sbjct: 196 STQLDGRTVYVKEY 209
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 32/189 (16%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
I+H S VG V E+ G+ +G +V+F++PD A+N +H + +GR ++++ +
Sbjct: 126 IAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVR--L 183
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E GG GG + S+ LQ + V NL
Sbjct: 184 ERAGGANKSGGPNAGRPEASSGLQ-----------------------------IVVRNLP 214
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
+ + LR+VF+ G V E D G+S+G+GTV F+ +A +I N L
Sbjct: 215 WSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELEH 274
Query: 228 RRITVRMDR 236
R + +++DR
Sbjct: 275 RPMQIKLDR 283
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T V+I G+ RG IVE+ + + + A+ + R + ++E DK
Sbjct: 27 FSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQTLDGHTLGDRNITVRE---DK 83
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ G +R +T G +P + G C +V NL ++
Sbjct: 84 APTKSAPSKSGGNR--------------STIGDTP---AADGCRC------YVGNLAWET 120
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+E+ L G V E+A G+S+G+G V+F+ P A +I+ L+N +L R I
Sbjct: 121 NEESLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLHNSDLQGRSII 180
Query: 232 VRMDRV--ADRLDGP 244
VR++R A++ GP
Sbjct: 181 VRLERAGGANKSGGP 195
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+++V N+ + +LR +F G + V+I + G+SRG+G VE+ + EA +I
Sbjct: 7 NRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQT 66
Query: 220 LNNQNLFERRITVRMDR 236
L+ L +R ITVR D+
Sbjct: 67 LDGHTLGDRNITVREDK 83
>gi|326428383|gb|EGD73953.1| hypothetical protein PTSG_05647 [Salpingoeca sp. ATCC 50818]
Length = 372
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE-D 110
+S +G V + ++L D G+ +G IV F + +A+ +M E GR+++++E E
Sbjct: 78 MSEIGHVAFADVLRDMNGRSKGCGIVVFGDVETANRAIAEMSGRELDGRQIMVREDREAH 137
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+ RR+ + R + S + G+T V+V L Y
Sbjct: 138 RFPRRSARPPAPMHRPSTNYTATFSGEMGST--------------------VYVGGLPYS 177
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ + L+++ R AG VE+VE+ D +G S+G G V F +A +I M N Q L R +
Sbjct: 178 MTWQHLKDLMRKAGPVEHVEVMYDGNGMSKGCGLVRFATAEDAQNAIRMFNEQPLDGRNL 237
Query: 231 TVRMDRVADRL 241
VR+D AD+
Sbjct: 238 LVRVDAEADKY 248
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 43/185 (23%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V +VE++ D G +G +V F + + + A+ + GR L+++ E
Sbjct: 187 MRKAGPVEHVEVMYDGNGMSKGCGLVRFATAEDAQNAIRMFNEQPLDGRNLLVRVDAEAD 246
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR G+S V V NL ++V
Sbjct: 247 KYRR---------------------------GVS----------------VHVGNLPWEV 263
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++L+++ R AG+V + E+ D +G SRG+G V F A +I N R IT
Sbjct: 264 TWRELKDLMRPAGEVIHAEVMHDNNGLSRGWGIVRFVSADGANAAIEQFNEFEWLGRSIT 323
Query: 232 VRMDR 236
VR+DR
Sbjct: 324 VRLDR 328
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
TV V LP ++TWQ L+D R G ++ E+ G+ GLVRF + A+ AI M
Sbjct: 168 TVYVGGLPYSMTWQHLKDLMRKAGPVEHVEVMYDGNGMSKGCGLVRFATAEDAQNAIRMF 227
Query: 573 DRTRIDGK 580
+ +DG+
Sbjct: 228 NEQPLDGR 235
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL + +L+E G V ++ D +G+S+G G V F A ++I+ ++
Sbjct: 60 VYVGNLSWSTTWPRLKEFMSEIGHVAFADVLRDMNGRSKGCGIVVFGDVETANRAIAEMS 119
Query: 222 NQNLFERRITVRMDRVADRL 241
+ L R+I VR DR A R
Sbjct: 120 GRELDGRQIMVREDREAHRF 139
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 490 IQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI- 548
+ GGY P G R NQ +V V NL + TW L++ G + FA++
Sbjct: 36 VPHGGYPMPHGGPRPVRQ-NQPGT----SVYVGNLSWSTTWPRLKEFMSEIGHVAFADVL 90
Query: 549 -----KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+ KG G+V F TA RAI M +DG+ I V
Sbjct: 91 RDMNGRSKG-CGIVVFGDVETANRAIAEMSGRELDGRQIMV 130
>gi|336375600|gb|EGO03936.1| hypothetical protein SERLA73DRAFT_84149 [Serpula lacrymans var.
lacrymans S7.3]
Length = 421
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 43/214 (20%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVEF S + ++++ ++ GR + I+E
Sbjct: 36 MEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASQEDSQRSIRELSETPLLGRPVFIRE-- 93
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNT-------YGLSPQFLES---------- 151
DR+ N S+FG T ++ Q L +
Sbjct: 94 ---------------DRE-------NESRFGATPVPGKIGMAMAGQGLHAAPPPRPPHHN 131
Query: 152 -LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
G + N+++V NL Y+ + L+++FR AG + +I + DG+ +G GTV F+ P
Sbjct: 132 FFGTHSNPGNQLYVGNLPYQAGWQDLKDLFRAAGNIIRADINIGADGRPKGSGTVVFETP 191
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVADRLDGP 244
+A Q+ISM + + + R + VR DR A L GP
Sbjct: 192 KDAQQAISMYHGFDWYGRTLEVREDRYAG-LSGP 224
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF ++ +SI
Sbjct: 19 NRVYVGNLSYDVKYRDLMEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASQEDSQRSIRE 78
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
L+ L R + +R DR + G +P IGM + G
Sbjct: 79 LSETPLLGRPVFIREDRENESRFGATPVP---GKIGMAMAGQG 118
>gi|351699809|gb|EHB02728.1| Disintegrin and metalloproteinase domain-containing protein 9
[Heterocephalus glaber]
Length = 941
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 36/144 (25%)
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
++KA + +++ GR L +KE + + RR M G + G+T
Sbjct: 18 MKKAADVLNKHSVSGRPLKVKENPDSEQSRRAMQKAG---------------RLGST--- 59
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VFVANLDYKV KKL+ + +AG + +I DKDGK+RG GT
Sbjct: 60 -----------------VFVANLDYKVGWKKLKYLV-MAGMMVQADILKDKDGKTRGIGT 101
Query: 205 VEFDHPVEAVQSISMLNNQNLFER 228
V F+ +EAVQ+I M N+Q LF+R
Sbjct: 102 VTFEQSIEAVQAIFMFNSQLLFDR 125
>gi|294894762|ref|XP_002774943.1| splice factor, putative [Perkinsus marinus ATCC 50983]
gi|294949797|ref|XP_002786345.1| splice factor, putative [Perkinsus marinus ATCC 50983]
gi|239880718|gb|EER06759.1| splice factor, putative [Perkinsus marinus ATCC 50983]
gi|239900565|gb|EER18141.1| splice factor, putative [Perkinsus marinus ATCC 50983]
Length = 250
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 4/187 (2%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ + GDV V+IL GK +G A+VE+++ + KA++ ++ E RK+ ++E D
Sbjct: 25 HMKSAGDVESVDILVRRDGKSKGCALVEYKTEEAAEKAIDTLNDTEVGKRKIFVRE---D 81
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK-VFVANLDY 169
+G M R K + L + +++ ++V NL +
Sbjct: 82 RGPIEEMDQDAATTRQGKGKGGKGKGKGKGKGFKGRDRIRPLKVGEKDVHRLIYVGNLPW 141
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ + L+++FR G V V++A DG+S+GF T+ F P A ++I N L R+
Sbjct: 142 RTAWQDLKDLFRECGDVIRVDMAEGWDGRSKGFATILFQDPEGAQKAIEKYNGYELQGRK 201
Query: 230 ITVRMDR 236
+ VR D+
Sbjct: 202 LFVREDQ 208
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V +LD++V E +L + + AG VE+V+I + +DGKS+G VE+ A ++I LN
Sbjct: 8 VYVGSLDFEVTESQLGDHMKSAGDVESVDILVRRDGKSKGCALVEYKTEEAAEKAIDTLN 67
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
+ + +R+I VR DR GP+
Sbjct: 68 DTEVGKRKIFVREDR------GPI 85
>gi|443922295|gb|ELU41761.1| trehalose 6-phosphate phosphatase, glycosyltransferase family 20
protein [Rhizoctonia solani AG-1 IA]
Length = 1323
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V + E+L TG +G IVEF + + ++A+ + GR + I+E E +
Sbjct: 9 GEVVFAEVLVTPTGVSKGCGIVEFSTHEEAQRAIRDLSETPLLGRPIFIREDRESEA--- 65
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
G V + A + + Y P G N N+++V NL Y+ +
Sbjct: 66 -RFGAPSVPGKMGAAMAHTG------YSTPPPRSALAGTNPG--NQLYVGNLPYQAGWQD 116
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
L+++FR AG + +I + DG+ +G GTV F+ +A +I M N + + R I VR D
Sbjct: 117 LKDLFRTAGAIVRADINVGYDGRPKGSGTVIFETAKDAQAAIQMYNGYDWYGRIIEVRED 176
Query: 236 RVA 238
R A
Sbjct: 177 RYA 179
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 484 GSGQASIQSGGYGNP--RAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCG 541
G A++ GY P R+ L NQ + V NLP WQ+L+D FR G
Sbjct: 74 GKMGAAMAHTGYSTPPPRSALAGTNPGNQ--------LYVGNLPYQAGWQDLKDLFRTAG 125
Query: 542 DIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
I A+I + KG G V F++ A+ AI M + G+II+V
Sbjct: 126 AIVRADINVGYDGRPKGS-GTVIFETAKDAQAAIQMYNGYDWYGRIIEV 173
>gi|66362402|ref|XP_628165.1| Gbp1/Gbp2p-like single stranded G-strand telomeric DNA-binding
protein [Cryptosporidium parvum Iowa
gi|67605728|ref|XP_666700.1| single-stranded G-strand telomeric DNA-binding protein
[Cryptosporidium hominis TU502]
gi|28395327|gb|AAO39067.1| putative single stranded G-strand telomeric DNA-binding protein
[Cryptosporidium parvum]
gi|46227370|gb|EAK88305.1| Gbp1/Gbp2p-like, putative single stranded G-strand telomeric
DNA-binding protein [Cryptosporidium parvum Iowa II]
gi|54657743|gb|EAL36470.1| single-stranded G-strand telomeric DNA-binding protein
[Cryptosporidium hominis]
gi|323508647|dbj|BAJ77217.1| cgd1_3530 [Cryptosporidium parvum]
Length = 198
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G+V ++ D+ G+ RG +VE+ P+ ++A+N+++ R + ++E ED
Sbjct: 26 HMRQAGNVIRADVFEDEVGRSRGCGVVEYSFPEEAQRAINELNNTTLLDRLIFVREDRED 85
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+ R +R + ++ + P E+ G +VFV NL +K
Sbjct: 86 ESSRYGRRSNKWNNRGYGMRTRTHAPR-------PPLKEENKG------KQVFVTNLAWK 132
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
++ L + F G +E+ E+ +DG+SRG T+ F P A ++ LN++ + R I
Sbjct: 133 TTQEDLAKAFNEIGPLESCEVFYFEDGRSRGIATIVFTDPNHAQLAVEKLNDREIDGREI 192
Query: 231 TVRMD 235
VR+D
Sbjct: 193 LVRID 197
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
NC +V+V NL +K L++ R AG V ++ D+ G+SRG G VE+ P EA
Sbjct: 6 NC----RVYVGNLPWKAKWHDLKDHMRQAGNVIRADVFEDEVGRSRGCGVVEYSFPEEAQ 61
Query: 215 QSISMLNNQNLFERRITVRMDR 236
++I+ LNN L +R I VR DR
Sbjct: 62 RAINELNNTTLLDRLIFVREDR 83
>gi|298713553|emb|CBJ27081.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 437
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 32/185 (17%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V +V++ + G+ +G A+VE+++P A+ +H E GR + ++E
Sbjct: 281 HMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLIFVRE---- 336
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
DR+ + S + G + + +V V+N+ ++
Sbjct: 337 -------------DREEGPI---GSKRIGQLHEGAEG------------RQVHVSNVSWE 368
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ L++ F+ G+V+ VEI D G+S+G+ TV F +A +I+ L+ +L RRI
Sbjct: 369 TGWQSLKDHFKQCGRVQFVEIPEDAQGRSKGYATVRFGSEQDAADAINQLDGTDLDGRRI 428
Query: 231 TVRMD 235
VR D
Sbjct: 429 GVRED 433
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V ++ G+ +G VEF P R A++++ E GR + ++E D
Sbjct: 189 HMKNAGSVIRADVFVGPDGRSKGLGTVEFSKPYEARNAISQLSETELMGRPIQVREERGD 248
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G N+ G KV+V NL ++
Sbjct: 249 AG--------------------NHGRGVGGA----------------AGAKVYVGNLSWE 272
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ L++ R AG V+ V++ + G+S+G VE++ P EA +I L++ L R I
Sbjct: 273 CQWQDLKDHMRAAGSVKFVDLFQEPGGRSKGCAVVEYETPQEAHSAIRDLHDTELLGRLI 332
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIG-MGLGANG 262
VR DR +GP+ G K IG + GA G
Sbjct: 333 FVR----EDREEGPI----GSKRIGQLHEGAEG 357
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
NC KVFV+NL Y V + L++ + AG V ++ + DG+S+G GTVEF P EA
Sbjct: 169 NC----KVFVSNLAYDVQWQDLKDHMKNAGSVIRADVFVGPDGRSKGLGTVEFSKPYEAR 224
Query: 215 QSISMLNNQNLFERRITVRMDR 236
+IS L+ L R I VR +R
Sbjct: 225 NAISQLSETELMGRPIQVREER 246
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL + V K+L+++ G + E+ DG+SRG+G V F A +I
Sbjct: 65 NRVYVGNLAWTVTWKELKDLMGTCGPCK-AEVPCGADGRSRGYGLVTFTSAAGASDAIDR 123
Query: 220 LNNQNLFERRITVRMDR 236
L + +L R I +R DR
Sbjct: 124 LQDTDLMGRPIYLREDR 140
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V N+ WQ L+D F+ CG ++F EI + KG VRF SE A AI+ +
Sbjct: 360 VHVSNVSWETGWQSLKDHFKQCGRVQFVEIPEDAQGRSKG-YATVRFGSEQDAADAINQL 418
Query: 573 DRTRIDGKIIDV 584
D T +DG+ I V
Sbjct: 419 DGTDLDGRRIGV 430
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
V V NL T+TW+EL+D CG K AE+ D GLV F S A AID +
Sbjct: 67 VYVGNLAWTVTWKELKDLMGTCGPCK-AEVPCGADGRSRGYGLVTFTSAAGASDAIDRLQ 125
Query: 574 RTRIDGKII 582
T + G+ I
Sbjct: 126 DTDLMGRPI 134
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL + WQ+L+D +N G + A++ + KG +G V F + A+ AI +
Sbjct: 172 VFVSNLAYDVQWQDLKDHMKNAGSVIRADVFVGPDGRSKG-LGTVEFSKPYEARNAISQL 230
Query: 573 DRTRIDGKIIDV 584
T + G+ I V
Sbjct: 231 SETELMGRPIQV 242
>gi|302675531|ref|XP_003027449.1| hypothetical protein SCHCODRAFT_86032 [Schizophyllum commune H4-8]
gi|300101136|gb|EFI92546.1| hypothetical protein SCHCODRAFT_86032 [Schizophyllum commune H4-8]
Length = 559
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 40/206 (19%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVEF SP+ +++V ++ GR + I+E
Sbjct: 199 MEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASPEDAQRSVRELSEQSLLGRPVFIRE-- 256
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTY--GLSPQFLESLGINC------PLIN 160
DR+ N S+FG T G + G+N P N
Sbjct: 257 ---------------DRE-------NESRFGATPVPGKMGMAMAGQGMNAGPPPRPPAHN 294
Query: 161 --------KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVE 212
+++V NL Y+ + L+++FR AG + +I + DG+ +G GTV F+ +
Sbjct: 295 HAAGNPGNQLYVGNLPYQAGWQDLKDLFRTAGSIVRADINIGMDGRPKGSGTVVFETAKD 354
Query: 213 AVQSISMLNNQNLFERRITVRMDRVA 238
A Q+I M N + + R + VR DR A
Sbjct: 355 AQQAIQMYNGFDWYGRVLEVREDRYA 380
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF P +A +S+
Sbjct: 182 NRVYVGNLSYDVRYRDLMEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASPEDAQRSVRE 241
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
L+ Q+L R + +R DR + G +P + G G N P
Sbjct: 242 LSEQSLLGRPVFIREDRENESRFGATPVPGKMGMAMAGQGMNAGP 286
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 41/228 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G+VT + + D+ GK RG V +++ + +AV ++H E K RKL + A +
Sbjct: 267 FKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKH 326
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFG--NTYGLSPQFLESLGINCPLINKVFVANLDY 169
+R+ Q +K N Y GIN +FV NLD
Sbjct: 327 ------------EREEELRKQYEQAKLDKLNKYN---------GIN------LFVKNLDD 359
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL---- 225
+D+++LR+ F + G + + +I +D +GKS+GFG V F P EA ++I+ +N + +
Sbjct: 360 DIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKP 419
Query: 226 ----FERRITVRMDRVADRLDG--PVRLPEGLKSIGMG--LGANGAPL 265
+R VR ++ +++ +R+ + + GM G GAP+
Sbjct: 420 LYVALAQRKDVRRSQLESQINARNQLRIQQQAAAAGMSPQYGMPGAPM 467
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 48/71 (67%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V N+D ++ E + E+F+ G V ++ +++D++GKSRGFG V +++ +A +++ L+
Sbjct: 249 VYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELH 308
Query: 222 NQNLFERRITV 232
+ +R++ V
Sbjct: 309 DTEYKDRKLYV 319
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
VF+ NLD +D K L + F G + + ++A+D+ G S+G+G V +
Sbjct: 166 VFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHY 211
>gi|299741815|ref|XP_001832059.2| RNP domain-containing protein [Coprinopsis cinerea okayama7#130]
gi|298404895|gb|EAU89705.2| RNP domain-containing protein [Coprinopsis cinerea okayama7#130]
Length = 588
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 7/192 (3%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
I + G+V + E+L TG +G IVEF S + ++A+ ++ GR + I+E
Sbjct: 196 IEFMRGAGEVLFAEVLVTPTGISKGCGIVEFASQEDAQRAIRELSEQPLLGRPVFIREDR 255
Query: 109 EDKG--GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E++ G + G G+ L + S + N+++V N
Sbjct: 256 ENEARFGATPVPGKIGMAMAGQGLHAAPPPR-----PPSHNYFSGGPGGGNPGNQLYVGN 310
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A Q+ISM N + +
Sbjct: 311 LPYQAGWQDLKDLFRAAGSIVRADINIGVDGRPKGSGTVVFETVKDAQQAISMYNGFDWY 370
Query: 227 ERRITVRMDRVA 238
R + VR DR A
Sbjct: 371 GRILEVREDRYA 382
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF +A ++I
Sbjct: 179 NRVYVGNLSYDVKYRDLIEFMRGAGEVLFAEVLVTPTGISKGCGIVEFASQEDAQRAIRE 238
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPE--GLKSIGMGLGANGAPLQDVANWL 272
L+ Q L R + +R DR + G +P G+ G GL A P N+
Sbjct: 239 LSEQPLLGRPVFIREDRENEARFGATPVPGKIGMAMAGQGLHAAPPPRPPSHNYF 293
>gi|395324355|gb|EJF56797.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 382
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 42/207 (20%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G+V + E+L TG +G IVE+ S + ++++ ++ GR + I+E
Sbjct: 10 AGEVLFAEVLVTPTGVSKGCGIVEYASQEDAQRSIRELSEQLLLGRPVFIRE-------- 61
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNT-------YGLSPQFLESLGINCPLI-------- 159
DR+ N S+FG T ++ Q L ++ P
Sbjct: 62 ---------DRE-------NESRFGATPVPGKIGMAMAGQGLNAVPPPRPPSHNYFTHSN 105
Query: 160 --NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
N+++V NL Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A Q+I
Sbjct: 106 PGNQLYVGNLPYQAGWQDLKDLFRSAGNIIRADINIGADGRPKGSGTVIFETAKDAQQAI 165
Query: 218 SMLNNQNLFERRITVRMDRVADRLDGP 244
SM N + + R + VR DR A L GP
Sbjct: 166 SMYNGFDWYGRTLEVREDRYAG-LTGP 191
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 182 LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241
LAG+V E+ + G S+G G VE+ +A +SI L+ Q L R + +R DR +
Sbjct: 9 LAGEVLFAEVLVTPTGVSKGCGIVEYASQEDAQRSIRELSEQLLLGRPVFIREDRENESR 68
Query: 242 DGPVRLPEGLKSIGMGLGANGAP 264
G +P + G G N P
Sbjct: 69 FGATPVPGKIGMAMAGQGLNAVP 91
>gi|354545262|emb|CCE41989.1| hypothetical protein CPAR2_805380 [Candida parapsilosis]
Length = 454
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 57 DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE--DKGGR 114
D+ +I+ + G+ RG A VEF++ D V KA+NK +F +GR + +++ DK
Sbjct: 139 DIVRADIVTN-RGRSRGMATVEFKTHDDVLKAINKYDKFVYQGRAIFVRQDYPPPDK--- 194
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTY------------------------GLSPQFLE 150
+N G G DR ++G++Y G
Sbjct: 195 QNFGSGRSFDR--------GRDRYGDSYYGRDRDSSRGGYGRGGGGAGGASGGYGRSDYR 246
Query: 151 SLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
+VFV NL + ++ + L+++ R AG V ++ LD G+SRGFGTV F+ P
Sbjct: 247 PPLPPTTPGTEVFVGNLPFSINWQALKDIMRKAGSVTRADVRLDHMGRSRGFGTVVFETP 306
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVA 238
EA ++ M + R++ R R A
Sbjct: 307 EEADAAVEMFQGYEIEGRKLDTRHGRTA 334
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 11/181 (6%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G VT ++ D G+ RG V F++P+ AV +E +GRKL +
Sbjct: 276 MRKAGSVTRADVRLDHMGRSRGFGTVVFETPEEADAAVEMFQGYEIEGRKLDTRHGRTAY 335
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G G + + + +++F T G+S G + ++V NL +
Sbjct: 336 SS--TTGDAGSDASAAAPIARKTNTEF--TQGVS-------GDGDEPNDTIYVENLPFST 384
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
L ++F GKV N EI +DG++ G V+F+ A S++ LN R++
Sbjct: 385 QNDDLFDLFETIGKVSNAEIQYQEDGRASGNAVVQFESVDSATTSLNELNGYEYGGRKLK 444
Query: 232 V 232
+
Sbjct: 445 I 445
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP +I WQ L+D R G + A++ + +G G V F++ A A++M
Sbjct: 258 VFVGNLPFSINWQALKDIMRKAGSVTRADVRLDHMGRSRG-FGTVVFETPEEADAAVEMF 316
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 317 QGYEIEGRKLDT 328
>gi|387196982|gb|AFJ68787.1| rnp domain-containing protein [Nannochloropsis gaditana CCMP526]
Length = 193
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ VG+V + ++L D G+ +G IVE+ +P +A+ +++ + KGR + ++E ED
Sbjct: 25 HMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED 84
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCP---LINKVFVANL 167
K MGG G A + +G+ P +++V NL
Sbjct: 85 K----KMGGPMGGGFQGGASMHR------------------VGVGGPPSAAGRQLYVGNL 122
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D+++ + L++ F+ V+ E+A D +G+SRGFGTV F EA ++ LN NL
Sbjct: 123 DFEITWQGLKDHFK-GFDVQRAEVAYDAEGRSRGFGTVRFGTAAEAQRAQEALNGTNLNN 181
Query: 228 RRITVRMD 235
R I VR D
Sbjct: 182 RTIEVRED 189
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y+V + L++ R G V + ++ D +G+S+G G VE+D+P A+++I L
Sbjct: 7 RVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKGCGIVEYDNPHGAMRAIREL 66
Query: 221 NNQNLFERRITVRMDR 236
NN +L R I VR DR
Sbjct: 67 NNTDLKGRLIFVREDR 82
Score = 40.4 bits (93), Expect = 2.9, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL + WQ+L+D R G++ A++ + KG G+V +D+ A RAI +
Sbjct: 8 VYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHEGRSKG-CGIVEYDNPHGAMRAIREL 66
Query: 573 DRTRIDGKIIDV 584
+ T + G++I V
Sbjct: 67 NNTDLKGRLIFV 78
>gi|210075933|ref|XP_503927.2| YALI0E14058p [Yarrowia lipolytica]
gi|199426916|emb|CAG79520.2| YALI0E14058p [Yarrowia lipolytica CLIB122]
Length = 417
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 104/233 (44%), Gaps = 31/233 (13%)
Query: 28 GAPLEVPVVMDLIQGDASLY--------QISHLS----TVGDVTYVEILNDDTGKPRGSA 75
G P + V D Q D +Y + HL G+V + ++L G+ +G
Sbjct: 73 GPPQMLQQVKDSSQQDRRVYVGNLAYEVKWHHLKDFMRQAGNVLFADVLLMPNGRSKGCG 132
Query: 76 IVEFQSPDLVRKAVNKMHRFETKGRKLVIKE--AVEDKGGRRNMGGGGGVDRDLSALLQN 133
IVE+ + + AVN + E GR + ++E E K + N+G G D
Sbjct: 133 IVEYSTREEAENAVNTLTNQELMGRVVYVREDRESEPKFSQPNLGPPGARD--------G 184
Query: 134 NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIAL 193
S+ G +G S Q G P ++FV NL Y + L+++FR AG++ +I
Sbjct: 185 GRSERGGDFGGSRQ----SGGGAPGT-QLFVGNLPYSTGWQDLKDLFREAGQIVRADIMT 239
Query: 194 DKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVR 246
DG+S+G G V F+ +A ++I N + R I VR DR A GP R
Sbjct: 240 SHDGRSKGSGIVLFETAEDAHRAIERFNGHQMGGRAIEVREDRFA----GPPR 288
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 8/181 (4%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G + +I+ G+ +GS IV F++ + +A+ + + + GR + ++E +
Sbjct: 226 FREAGQIVRADIMTSHDGRSKGSGIVLFETAEDAHRAIERFNGHQMGGRAIEVRE--DRF 283
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G G V R A N + + + ++G P + +FV NL +
Sbjct: 284 AGPPRGGPPARVARTPFAPAPQNPPRVPSEFSDG-----AIGGGDP-SDTIFVGNLPWST 337
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ L ++F GKV EI DGK G G V+F+ P A SI+ + N R +
Sbjct: 338 ADQDLYDLFETVGKVTKAEIQFLPDGKKAGSGVVQFETPASAEISIAKFSGYNYGRRDLE 397
Query: 232 V 232
+
Sbjct: 398 L 398
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP + WQ+L+D FR G I A+I + KG G+V F++ A RAI+
Sbjct: 208 LFVGNLPYSTGWQDLKDLFREAGQIVRADIMTSHDGRSKGS-GIVLFETAEDAHRAIERF 266
Query: 573 DRTRIDGKIIDV 584
+ ++ G+ I+V
Sbjct: 267 NGHQMGGRAIEV 278
>gi|403419131|emb|CCM05831.1| predicted protein [Fibroporia radiculosa]
Length = 564
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVEF S + ++++ ++ GR + I+E
Sbjct: 189 MEFMRGAGEVLFAEVLITPTGVSKGCGIVEFASQEDAQRSIRELSEQALLGRPVFIREDR 248
Query: 109 EDKG--------GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
E++ G+ M G + + FG+ G +P N
Sbjct: 249 ENESRFGATPVPGKIGMAMAGQGLHAAPPPRPPHHNYFGHQ-GSNPG------------N 295
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A Q+I M
Sbjct: 296 QLYVGNLPYQAGWQDLKDLFRSAGNIIRADINIGADGRPKGSGTVIFETAKDAQQAIGMY 355
Query: 221 NNQNLFERRITVRMDRVA 238
N + + R + VR DR A
Sbjct: 356 NGFDWYGRTLEVREDRYA 373
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF +A +SI
Sbjct: 172 NRVYVGNLSYDVKYRDLMEFMRGAGEVLFAEVLITPTGVSKGCGIVEFASQEDAQRSIRE 231
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
L+ Q L R + +R DR + G +P IGM + G
Sbjct: 232 LSEQALLGRPVFIREDRENESRFGATPVP---GKIGMAMAGQG 271
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 36/196 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET--KGRKLVIKEAVE 109
+ G +T +++D GK +G V F++P+ KAVN+MH ++ RKL + A +
Sbjct: 220 FAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRA-Q 278
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVA 165
K R SA L+ + Q +E + G+N ++V
Sbjct: 279 KKNER-------------SAELKRRYEQ---------QKVERMQRYQGVN------LYVK 310
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLD VD++ LR+ F GK+ + ++ D +G+S+GFG V F+ P EA ++++ +N + +
Sbjct: 311 NLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 370
Query: 226 FERRITVRM-DRVADR 240
+ + V + R DR
Sbjct: 371 CTKPLYVALAQRKEDR 386
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 37/183 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ ND+ +G V F++ + +KA+ K++ +G+K+ + +
Sbjct: 127 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRA 186
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R MG + +F N VF+ N ++
Sbjct: 187 ARMREMG--------------ETARRFTN---------------------VFIKNFADEL 211
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERR 229
D++KL ++F GK+ + + D DGKS+GFG V F++P +A ++++ ++ L ER+
Sbjct: 212 DKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERK 271
Query: 230 ITV 232
+ V
Sbjct: 272 LYV 274
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ G+
Sbjct: 32 EAMLFE--KFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDVMYGKP 89
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR+ G
Sbjct: 90 IRIMWSQRDPSMRRSGAGN----------------------------------------- 108
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F + G + + ++A D++ S+G+G V F+ A ++I +N
Sbjct: 109 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 168
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 169 GMLLEGKKVYV 179
>gi|392561626|gb|EIW54807.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 415
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVE+ + + ++A+ ++ R + I+E
Sbjct: 36 MEFMRGAGEVLFAEVLITPTGVSKGCGIVEYANQEDAQRAIRELSEQLLLSRPVFIREDR 95
Query: 109 EDKG--------GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
E + G+ M G + L+A + + GL+P N
Sbjct: 96 EHESRFGATPVPGKIGMAMAG---QGLNAAPPPRPASHNHFGGLNPG------------N 140
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V NL Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A Q+ISM
Sbjct: 141 QLYVGNLPYQAGWQDLKDLFRSAGNIIRADINIGLDGRPKGSGTVIFETAKDAQQAISMY 200
Query: 221 NNQNLFERRITVRMDRVADRLDGP 244
N + + R + VR DR A L GP
Sbjct: 201 NGFDWYGRTLEVREDRYAG-LTGP 223
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VE+ + +A ++I
Sbjct: 19 NRVYVGNLSYDVRYRDLMEFMRGAGEVLFAEVLITPTGVSKGCGIVEYANQEDAQRAIRE 78
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
L+ Q L R + +R DR + G +P + G G N AP
Sbjct: 79 LSEQLLLSRPVFIREDREHESRFGATPVPGKIGMAMAGQGLNAAP 123
>gi|409048188|gb|EKM57666.1| hypothetical protein PHACADRAFT_251433 [Phanerochaete carnosa
HHB-10118-sp]
Length = 542
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVEF S + ++A+ ++ GR + I+E
Sbjct: 171 MEFMRGAGEVLFAEVLITPTGVSKGCGIVEFTSQEDAQRAIRELSEQPLLGRPVFIREDR 230
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E++ + G V + + + G N N+++V NL
Sbjct: 231 ENE----SRFGATPVPGKIGMAMAGQGLHAAPPPRPPHHNYFAAGTNPG--NQLYVGNLP 284
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A Q+I M N + R
Sbjct: 285 YQAGWQDLKDLFRSAGNIIRADINIGADGRPKGSGTVIFETAKDAQQAIGMYNGFEWYGR 344
Query: 229 RITVRMDRVADRLDGP 244
+ VR DR A L GP
Sbjct: 345 TLEVREDRYAG-LSGP 359
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF +A ++I
Sbjct: 154 NRVYVGNLSYDVKYRDLMEFMRGAGEVLFAEVLITPTGVSKGCGIVEFTSQEDAQRAIRE 213
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
L+ Q L R + +R DR + G +P IGM + G
Sbjct: 214 LSEQPLLGRPVFIREDRENESRFGATPVP---GKIGMAMAGQG 253
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ I+ D GK RG V+F+SP+ +KAV+ ++ ++ + R L + A + K
Sbjct: 219 FSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRA-QAK 277
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +LQ+ NT+ +E + ++V NL +
Sbjct: 278 AERKK-------------ILQHEYKDIFNTH------MEKFKAS-----NLYVKNLALCI 313
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D KL+E+F +GK+ + ++ +G SRGFG V F P EA ++++ LN
Sbjct: 314 DNDKLQELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALN 363
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 37/192 (19%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
S S G + +++ ++ GK +G V+F S D A +H K +KL + V+
Sbjct: 125 SLFSKFGTILSCKVV-EEHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVK 183
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ + + KF N Y V NL
Sbjct: 184 KS--------------ERTTATSYDELKFTNLY---------------------VKNLSK 208
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ + +F G++ + I D +GKSRGFG V+F+ P +A +++ LN L R
Sbjct: 209 DMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRT 268
Query: 230 ITV-RMDRVADR 240
+ V R A+R
Sbjct: 269 LFVGRAQAKAER 280
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I ++V NLD +D L+ +F G + + ++ +++ GKS+G+G V+FD A+ + +
Sbjct: 106 IGNLYVKNLDASIDSAGLQSLFSKFGTILSCKV-VEEHGKSKGYGFVQFDSEDSALAART 164
Query: 219 MLNNQNLFERRITV-RMDRVADR 240
L++ L E+++ V R + ++R
Sbjct: 165 ALHDTMLKEKKLYVSRFVKKSER 187
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIA-LDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V +LD +V E LR VF G + NV + G+S +G V F P +A +++S L
Sbjct: 21 LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNL 80
Query: 221 NNQNL 225
N+ L
Sbjct: 81 NHTYL 85
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ DD+GK RG V F+ PD +AV +++ + GR L + A + K
Sbjct: 212 FEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRA-QKK 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ + R L Q +++ G+N ++V NLD +
Sbjct: 271 AERQS-----ELKRHFEQLKQERLNRYQ-------------GVN------LYVKNLDDAL 306
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ D +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 307 DDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 36/202 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ + D+ +G V F++ + KA++K
Sbjct: 119 FSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISK-------------------- 158
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ +L NN + + + + LG V++ N ++
Sbjct: 159 ---------------VNGMLLNNKKVYVGKFIPRKEREKMLGDKARCFTNVYIKNFGDEL 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ KL +F GK+ + ++ D GK+RGFG V F+ P A +++ LN +++ R +
Sbjct: 204 DDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLY 263
Query: 232 V-RMDRVADRLDGPVRLPEGLK 252
V R + A+R R E LK
Sbjct: 264 VGRAQKKAERQSELKRHFEQLK 285
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + +A D++ S+G+G V F+ A ++IS
Sbjct: 98 VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAIS 157
Query: 219 -----MLNNQNLFERRITVRMDR 236
+LNN+ ++ + R +R
Sbjct: 158 KVNGMLLNNKKVYVGKFIPRKER 180
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 26/206 (12%)
Query: 35 VVMDLIQGDASLYQISHLST-VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93
V + I +AS ++ L T G VT + D GK RG A V ++ + K++ ++
Sbjct: 243 VYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLN 302
Query: 94 RFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLG 153
+ KG+KL + A + K R L L + + + +S G
Sbjct: 303 DQDYKGKKLYVGRA-QKKSER------------LEELKKQYEA------ARIEKLTKSQG 343
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
+N +FV NLD +D++KL+E F+ G + +V++ +D+ GKS+GFG V F P EA
Sbjct: 344 VN------LFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEA 397
Query: 214 VQSISMLNNQNLFERRITVRMDRVAD 239
++IS +N L + + V + + D
Sbjct: 398 SRAISEMNQHMLAGKPLYVALAQRKD 423
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 36/192 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D+ G+ +G V F+SP+ + A+ ++ ++ + V
Sbjct: 168 FSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHV--- 224
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RD + L+ F N V+V N+D +
Sbjct: 225 -----------ARRDRQSKLEEVIKSFTN---------------------VYVKNIDLEA 252
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E++++E+F G V + + D +GKSRGF V ++ AV+SI LN+Q+ +++
Sbjct: 253 SEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLY 312
Query: 232 V-RMDRVADRLD 242
V R + ++RL+
Sbjct: 313 VGRAQKKSERLE 324
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G ++ V+++ D++GK +G V F SP+ +A+++M++ G+ L + A +
Sbjct: 363 EFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALA-QR 421
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSS-----KFGNT---YGLSPQFLESLGINCPLINKV 162
K RR+ R+ L Q ++ +F T YG PQFL G PL N+
Sbjct: 422 KDVRRSQLEQQIQARNQLRLQQAAAAGGLPGQFIPTPFIYGQQPQFLPP-GARGPLPNQP 480
Query: 163 FV 164
F+
Sbjct: 481 FL 482
>gi|353243308|emb|CCA74865.1| related to heterogeneous nuclear ribonucleoprotein [Piriformospora
indica DSM 11827]
Length = 475
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 12/190 (6%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
I + G+V + E+L +G+ +G IVEF + + ++A+ ++ GR + ++E
Sbjct: 133 IEFMRGAGEVLFAEVLVTPSGQSKGCGIVEFATAEEAQRAIKELSETVFLGRPVYLREDR 192
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + G V + A + N GN + P + G P N+++V NL
Sbjct: 193 EAE----SRFGATPVPGKIGAAMAGN----GN---VPPPRGYNGGAANPG-NQLYVGNLP 240
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
Y+ + L+++FR AG + +I + DG+++G GTV F+ +A +ISM + + R
Sbjct: 241 YQAGWQDLKDLFRNAGNIVRADINIGIDGRAKGSGTVVFETAKDAQSAISMYHGYEWYGR 300
Query: 229 RITVRMDRVA 238
+ VR DR A
Sbjct: 301 TLEVREDRYA 310
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V L E R AG+V E+ + G+S+G G VEF EA ++I
Sbjct: 116 NRVYVGNLAYDVKYGDLIEFMRGAGEVLFAEVLVTPSGQSKGCGIVEFATAEEAQRAIKE 175
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANG 262
L+ R + +R DR A+ G +P IG + NG
Sbjct: 176 LSETVFLGRPVYLREDREAESRFGATPVP---GKIGAAMAGNG 215
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 27/193 (13%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE-AVEDKGGRRNMGGGGGVDRDL 127
G+ +GS V F++ + A++ H +E GR L ++E G R G G+ R
Sbjct: 269 GRAKGSGTVVFETAKDAQSAISMYHGYEWYGRTLEVREDRYAGLHGSRGRGAPRGLGRGF 328
Query: 128 SALLQNNSSK-----------------------FGNTYGLSPQFLESLG--INCPLINKV 162
S+ + + G S E G N P ++
Sbjct: 329 SSRGAPGGGYGRGGGGGFGRGGPGGGGRSSGDLYQDYSGPSGDRGERGGGYANLPPSQQI 388
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
V NL + + L E+F G VE EI D +S+G G V+F H EA +I+ +
Sbjct: 389 MVRNLPWSTANEDLVELFETTGHVELAEILYDGT-RSKGSGVVQFTHVEEAETAIAKFSG 447
Query: 223 QNLFERRITVRMD 235
R + V +
Sbjct: 448 YTYGGRPLDVSFN 460
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP WQ+L+D FRN G+I A+I + KG G V F++ A+ AI M
Sbjct: 234 LYVGNLPYQAGWQDLKDLFRNAGNIVRADINIGIDGRAKGS-GTVVFETAKDAQSAISMY 292
Query: 573 DRTRIDGKIIDV 584
G+ ++V
Sbjct: 293 HGYEWYGRTLEV 304
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 25/215 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++T ++ D++GKP+G V F PD KAV+ ++ +G L + K
Sbjct: 256 FSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQK 315
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R AL Q ++ G+N ++V N++ ++
Sbjct: 316 KSERT----AELKRKYEALKQERVQRYQ-------------GVN------LYVKNIEEEM 352
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ LRE F G + + ++ +D++G+S+GFG V F+ P EA +++ +N++ + + +
Sbjct: 353 TDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLY 412
Query: 232 VRMDRVAD--RLDGPVRLPEGLKSIGMGLGANGAP 264
V + + + R + + L ++ MG NG P
Sbjct: 413 VALAQRKEDRRAQLASQYMQRLATLRMGQQTNGVP 447
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 86/228 (37%), Gaps = 55/228 (24%)
Query: 52 LSTVGDVTYVEILNDDTGK-PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S G V + + D+T + G A V FQ P +A++ M+ GR + I + D
Sbjct: 75 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRD 134
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT---------------YGL------ 144
RR G G ++L ++ N S S FGN YG
Sbjct: 135 PAARR-AGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETE 193
Query: 145 ---------------------------SPQFLESLGINCPLINKVFVANLDYKVDEKKLR 177
Q ++ LG + VF+ N +DEKKL
Sbjct: 194 ASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLT 253
Query: 178 EVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
E+F G++ + + D GK +GFG V F P A++++ LN L
Sbjct: 254 EMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTL 301
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S VGDV+ V I+ D GK + V F+SPD +KAV+ M+ + L + +A +
Sbjct: 215 FSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKA--QR 272
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R M +L+ ++ + + S + L + + ++V NL+ +
Sbjct: 273 KSERTM------------ILKQ---EYKDLHNRSTEKLRA--------SNLYVKNLNVDI 309
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
D+KKL+EVF GK+ +V++ DG S+ FG V F P EA +++ LN LF
Sbjct: 310 DDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNGHPLF 364
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
C + ++V NLD + E L+++F + G V +V I +D +GKS+ FG V F P +A +
Sbjct: 191 CEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKK 250
Query: 216 SISMLN 221
++ ++N
Sbjct: 251 AVDVMN 256
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD+ + L +F G + + ++A ++G+S+GFG V+F+ A+ + + L+
Sbjct: 107 LFVKNLDFSISSSCLESIFSKYGTILSCKVA-GENGRSKGFGFVQFESQDSALVAQTALH 165
Query: 222 NQNLFERRITV 232
+ L +++ V
Sbjct: 166 DTMLGGKKLHV 176
>gi|68471181|ref|XP_720367.1| hypothetical protein CaO19.7076 [Candida albicans SC5314]
gi|77022468|ref|XP_888678.1| hypothetical protein CaO19_7076 [Candida albicans SC5314]
gi|46442232|gb|EAL01523.1| hypothetical protein CaO19.7076 [Candida albicans SC5314]
gi|76573491|dbj|BAE44575.1| hypothetical protein [Candida albicans]
Length = 297
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Query: 75 AIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNN 134
A VEF S D VR+A+NK R+E +GR++ +++ + + G G R + ++
Sbjct: 2 ATVEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRG--RGTTYDSRSG 59
Query: 135 SSKFGNTYGLSPQFLESLGINCPLIN---KVFVANLDYKVDEKKLREVFRLAGKVENVEI 191
S N S + ++ P +VF+ NL + V+ + L+++ R AG+V ++
Sbjct: 60 SRDRYNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADV 119
Query: 192 ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
LD G SRGFGTV F+ EA +++ M + R++ R R
Sbjct: 120 RLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDTRPGR 164
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ G RG V F + + KAV +E +GRKL +
Sbjct: 108 MRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDTRPG---- 163
Query: 112 GGRRNMGGGGGVDRD-LSALLQNNSSKFGN-----TYGLSPQFLESLGINCPLINKVFVA 165
R+ G G +RD + S +G+ + +F + + + + ++VA
Sbjct: 164 ---RSTGSSSGYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDGVTADGEKSDTIYVA 220
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
NL + + L ++F G+ EI DG+ G V+F+ A +IS LNN
Sbjct: 221 NLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAISQLNN 277
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP ++ WQ L+D R+ G++ A+++ +G G V F++E A +A++M
Sbjct: 90 VFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRG-FGTVVFNTEEEAAKAVEMF 148
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 149 QGYEIEGRKLDT 160
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D LY + TVG T EI D G+P G+A+V+F+ DL A+++++ + GR L
Sbjct: 228 DDDLYDL--FETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAISQLNNYLYGGRNL 285
Query: 103 VIKEA 107
I A
Sbjct: 286 QISYA 290
>gi|302847685|ref|XP_002955376.1| hypothetical protein VOLCADRAFT_109965 [Volvox carteri f.
nagariensis]
gi|300259218|gb|EFJ43447.1| hypothetical protein VOLCADRAFT_109965 [Volvox carteri f.
nagariensis]
Length = 219
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 21/192 (10%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V Y ++ DD G+ +G IVEF++P+ A+ ++ E GR+++++E ED+ ++
Sbjct: 36 GNVVYTNVMRDDDGRSKGWGIVEFETPEEALHAIQSLNGAELGGRRILVREDREDRDIKQ 95
Query: 116 NMGG-----------GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
+G GGG G ES G+ ++ V
Sbjct: 96 LIGSTEVQRAPRPARGGGRSSANGGRGAGRGRVGAAAEGAG----ESSGL------QIVV 145
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
+ + ++L+++F G VE ++ DG+SRG+GTV+F A +++ +
Sbjct: 146 QGIPWSYTWRELKDMFAEIGNVERADVVTSSDGRSRGYGTVKFTTKDAAEAAVTRFHESE 205
Query: 225 LFERRITVRMDR 236
L RR+ V +DR
Sbjct: 206 LEGRRLAVFIDR 217
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L + FV NL +K + L++ FR AG V + D DG+S+G+G VEF+ P EA+ +I
Sbjct: 10 LGKRCFVGNLAWKTSWQDLKDKFREAGNVVYTNVMRDDDGRSKGWGIVEFETPEEALHAI 69
Query: 218 SMLNNQNLFERRITVRMDR 236
LN L RRI VR DR
Sbjct: 70 QSLNGAELGGRRILVREDR 88
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 36/196 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVE 109
S G +T ++ D GK +G V F++P+ KAV +MH +E G RKL + A +
Sbjct: 219 FSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRA-Q 277
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVA 165
K R SA L+ + Q +E + G+N ++V
Sbjct: 278 KKNER-------------SAELKRRYEQ---------QKVERMQRYQGVN------LYVK 309
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLD V++ L++ F GK+ + ++ D +G+S+GFG V F+ P EA ++++ +N + +
Sbjct: 310 NLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 369
Query: 226 FERRITVRM-DRVADR 240
+ + V + R DR
Sbjct: 370 CTKPLYVALAQRKEDR 385
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 37/183 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ ND+ +G V F++ + +KA+ K++ +G+K+ + +
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRT 185
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R MG + +F N V++ N ++
Sbjct: 186 ARLREMG--------------ETARRFTN---------------------VYIKNFADEL 210
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERR 229
D++ L ++F GK+ + + +D DGKS+GFG V F++P +A ++++ ++ L ER+
Sbjct: 211 DKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERK 270
Query: 230 ITV 232
+ V
Sbjct: 271 LYV 273
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ G+
Sbjct: 31 EAMLFE--KFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKP 88
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR+ G
Sbjct: 89 IRIMWSQRDPSMRRSGAG-----------------------------------------N 107
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F + G + + ++A D++ S+G+G V F+ A ++I +N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 167
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 168 GMLLEGKKVYV 178
>gi|392578268|gb|EIW71396.1| hypothetical protein TREMEDRAFT_71152 [Tremella mesenterica DSM
1558]
Length = 524
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 16/184 (8%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
GDV + EI G+ +G IVEF +P+ +KA ++ GR + I+E E+ R
Sbjct: 159 GDVIFTEIFITPAGQSKGCGIVEFSNPEDTKKAKEELSEKPLFGRNVHIREDREENA-RF 217
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC-PLINKVFVANLDYKVDEK 174
M G K G G S FL + G P +FV NL + +
Sbjct: 218 GMAPIPG--------------KVGVATGESRNFLGAHGPRFNPANRNIFVGNLPLQASWQ 263
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+++ R AG+V +I + DG +G GTV + P A +I M N + F + VR
Sbjct: 264 DLKDLMRQAGEVIRADIGVHPDGNPKGNGTVVYLTPEAARAAIQMFNGFDWFGNVLEVRE 323
Query: 235 DRVA 238
DR A
Sbjct: 324 DRFA 327
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 160 NKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N++++ NL Y + K L + R G V EI + G+S+G G VEF +P + ++
Sbjct: 134 NRLYIGNLAYHCNYKDLEKFMRGSGGDVIFTEIFITPAGQSKGCGIVEFSNPEDTKKAKE 193
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMG-----LGANGAPLQD------ 267
L+ + LF R + +R DR + G +P G + G LGA+G
Sbjct: 194 ELSEKPLFGRNVHIREDREENARFGMAPIP-GKVGVATGESRNFLGAHGPRFNPANRNIF 252
Query: 268 VANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYD 303
V N LQ Q L ++ R EV+ R D + D
Sbjct: 253 VGNLPLQASWQDLKDLM--RQAGEVI-RADIGVHPD 285
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 36/196 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVE 109
S G +T ++ D GK +G V F++P+ KAV +MH +E G RKL + A +
Sbjct: 219 FSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRA-Q 277
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVA 165
K R SA L+ + Q +E + G+N ++V
Sbjct: 278 KKNER-------------SAELKRRYEQ---------QKVERMQRYQGVN------LYVK 309
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLD V++ L++ F GK+ + ++ D +G+S+GFG V F+ P EA ++++ +N + +
Sbjct: 310 NLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 369
Query: 226 FERRITVRM-DRVADR 240
+ + V + R DR
Sbjct: 370 CTKPLYVALAQRKEDR 385
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 37/183 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ ND+ +G V F++ + +KA+ K++ +G+K+ + +
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRT 185
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R MG + +F N V++ N ++
Sbjct: 186 ARLREMG--------------ETARRFTN---------------------VYIKNFADEL 210
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERR 229
D++ L ++F GK+ + + +D DGKS+GFG V F++P +A ++++ ++ L ER+
Sbjct: 211 DKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERK 270
Query: 230 ITV 232
+ V
Sbjct: 271 LYV 273
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ G+
Sbjct: 31 EAMLFE--KFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKP 88
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR+ G
Sbjct: 89 IRIMWSQRDPSMRRSGAG-----------------------------------------N 107
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F + G + + ++A D++ S+G+G V F+ A ++I +N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 167
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 168 GMLLEGKKVYV 178
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 36/196 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVE 109
S G +T ++ D GK +G V F++P+ KAV +MH +E G RKL + A +
Sbjct: 83 FSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQK 142
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVA 165
+ SA L+ + Q +E + G+N ++V
Sbjct: 143 KN--------------ERSAELKRRYEQ---------QKVERMQRYQGVN------LYVK 173
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLD V++ L++ F GK+ + ++ D +G+S+GFG V F+ P EA ++++ +N + +
Sbjct: 174 NLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMM 233
Query: 226 FERRITVRM-DRVADR 240
+ + V + R DR
Sbjct: 234 CTKPLYVALAQRKEDR 249
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 37/172 (21%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGG 122
+ ND+ +G V F++ + +KA+ K++ +G+K+ + + R MG
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMG---- 56
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
+ +F N V++ N ++D++ L ++F
Sbjct: 57 ----------ETARRFTN---------------------VYIKNFADELDKEALEKLFSK 85
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERRITV 232
GK+ + + +D DGKS+GFG V F++P +A ++++ ++ L ER++ V
Sbjct: 86 FGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYV 137
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 25/215 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++T ++ D GKP+G V + PD +KAV+ ++ +G L + K
Sbjct: 253 FSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQK 312
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R AL Q ++ G+N ++V N+D ++
Sbjct: 313 KSERT----ADLKRKYEALKQERVQRY-------------QGVN------LYVKNIDEEL 349
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ LR F G + + ++ +D++G+S+GFG V F+ P EA +++ +N++ + + +
Sbjct: 350 TDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLY 409
Query: 232 VRMDRVAD--RLDGPVRLPEGLKSIGMGLGANGAP 264
V + + + R + + L ++ MG NG P
Sbjct: 410 VALAQRKEDRRAQLASQYMQKLATLRMGQQTNGVP 444
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 56/236 (23%)
Query: 49 ISHLSTVGDVTYVEILNDDTGK-PRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKE 106
S G V + + D+T + G A V FQ P +A++ M+ FET GR + I
Sbjct: 69 FEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN-FETIHGRPMRIMW 127
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
+ D RR G +F+ N
Sbjct: 128 SQRDPAARRAGNG-----------------------------------------NIFIKN 146
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
LD +D K + + F L G + + ++A D+DG SRG+G V F+ A +I +N L
Sbjct: 147 LDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLS 206
Query: 227 ERRITV-RMDRVADRLDGPVRLPEGLKSIG-MGLGANGAPLQDVANWLLQEKVQKL 280
+++ V + A R LK +G GL +++ L QEK+ K+
Sbjct: 207 GKKVYVGKFQTRAQR----------LKELGESGLKYTNVFVKNFGEHLDQEKLTKM 252
>gi|403224331|dbj|BAM42461.1| predicted protein [Theileria orientalis strain Shintoku]
Length = 182
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 29/185 (15%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ VGDV +I+ D GK +G IVEF + + +A+++++ R++ ++E
Sbjct: 26 HMKQVGDVVRADIIEDRDGKSKGCGIVEFANEESAVRAISELNDTSILDRQIFVRE---- 81
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R N G +R + Y SP+ N V V NL +K
Sbjct: 82 --DRENYTPFRGYNR------------YQRGYSDSPK-----------SNTVMVTNLQWK 116
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
K+L+++F+ G V ++ +DG+SRG G V F + A ++I+M N+ +L R+I
Sbjct: 117 TTWKELKDLFKNCGIVLRADVLSYEDGRSRGIGKVIFANEYSAKKAINMYNDYSLGGRKI 176
Query: 231 TVRMD 235
VR++
Sbjct: 177 GVRLE 181
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV + L++ + G V +I D+DGKS+G G VEF + AV++IS L
Sbjct: 8 RVYVGNLSWKVKWQDLKDHMKQVGDVVRADIIEDRDGKSKGCGIVEFANEESAVRAISEL 67
Query: 221 NNQNLFERRITVRMDR 236
N+ ++ +R+I VR DR
Sbjct: 68 NDTSILDRQIFVREDR 83
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDM 571
+TV+V NL TW+EL+D F+NCG + A++ D IG V F +E++AK+AI+M
Sbjct: 106 NTVMVTNLQWKTTWKELKDLFKNCGIVLRADVLSYEDGRSRGIGKVIFANEYSAKKAINM 165
Query: 572 MDRTRIDGKIIDV 584
+ + G+ I V
Sbjct: 166 YNDYSLGGRKIGV 178
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDS 561
MN+S+ + V V NL + WQ+L+D + GD+ A+I K KG G+V F +
Sbjct: 1 MNKSN---KRRVYVGNLSWKVKWQDLKDHMKQVGDVVRADIIEDRDGKSKG-CGIVEFAN 56
Query: 562 EWTAKRAIDMMDRTRI 577
E +A RAI ++ T I
Sbjct: 57 EESAVRAISELNDTSI 72
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ + D+ G RG V F++ + +A+NK++ +K+ + + V
Sbjct: 119 FSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRS 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R MG D + L N V+V N ++
Sbjct: 179 ERERMMG-------DKARLFTN----------------------------VYVKNFGEEL 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE-RRI 230
D+ KL+E+F + GK+ + + D+ GKSRGFG V F++P A Q++ LN++ L ++I
Sbjct: 204 DDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKI 263
Query: 231 TV-RMDRVADRLDGPVRLPEGLK 252
V R + A+RL R E LK
Sbjct: 264 YVGRAQKKAERLSDLKRKFEQLK 286
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVED 110
G +T ++ D TGK RG V F++PD +AV +++ E G+K+ + A +
Sbjct: 212 FEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRA-QK 270
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R + + R L +++ G+N ++V NLD
Sbjct: 271 KAERLS-----DLKRKFEQLKMERMTRYQ-------------GVN------LYVKNLDDV 306
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+D+++LR F G + + ++ +D G +S+GFG V F P EA ++++ +N + + ++
Sbjct: 307 IDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKP 366
Query: 230 ITVRM-DRVADR 240
+ V + R DR
Sbjct: 367 LYVALAQRKEDR 378
>gi|409074961|gb|EKM75348.1| hypothetical protein AGABI1DRAFT_46641 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 579
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 10/192 (5%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE-- 106
I + G+V + E+L TG +G IVEF S + ++AV ++ GR + I+E
Sbjct: 196 IEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASQEDSQRAVRELSEQPLLGRPVFIREDR 255
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E + G + G G+ L + P G N N+++V N
Sbjct: 256 ETEARFGATPVPGKIGMAMAGQGLHAQPPPR--------PASHNFFGGNQNPGNQLYVGN 307
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A Q+I++ + + +
Sbjct: 308 LPYQAGWQDLKDLFRNAGSIIRADINIGADGRPKGSGTVVFETVKDAQQAINIYHGYDWY 367
Query: 227 ERRITVRMDRVA 238
R + VR DR A
Sbjct: 368 GRTLEVREDRYA 379
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL Y V + L E R AG+V E+ + G S+G G VEF ++ +++
Sbjct: 179 NRVYVGNLSYDVKYRDLIEFMRGAGEVLFAEVLVTPTGVSKGCGIVEFASQEDSQRAVRE 238
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPE--GLKSIGMGLGANGAP 264
L+ Q L R + +R DR + G +P G+ G GL A P
Sbjct: 239 LSEQPLLGRPVFIREDRETEARFGATPVPGKIGMAMAGQGLHAQPPP 285
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V NL + + L E+F G+VE EI D +S+G G V+F VEA +I+
Sbjct: 482 QIMVRNLPWSTANEDLVELFETTGQVELAEILFDGT-RSKGCGVVQFAQIVEAETAIAKF 540
Query: 221 NNQNLFERRITVRMD 235
N R + VR +
Sbjct: 541 QNYVYGGRPLDVRFN 555
>gi|393243611|gb|EJD51125.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 526
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L G +G IVEF S D ++A+ + GR + I+E
Sbjct: 166 MEFMRGAGEVLFAEVLVTPNGISKGCGIVEFGSYDDAQRAIRDLSEVPLLGRPVFIRE-- 223
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP-----------QFLESLGINCP 157
D+ G G V + A + G Y P + G
Sbjct: 224 -DREGEARFGATP-VPGKIGAAMA------GQGYTTQPPPRPPSHNVYGGGGNNGGGGGN 275
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
N+++V NL Y+ + L+++FR AG + +I + DG+++G GTV ++ +A +I
Sbjct: 276 PGNQLYVGNLPYQAGWQDLKDLFRQAGSIVRADINIGLDGRAKGSGTVVYESVKDADNAI 335
Query: 218 SMLNNQNLFERRITVRMDRVA 238
SM N F R++ VR+DR A
Sbjct: 336 SMYNGYEWFGRKLEVRLDRYA 356
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V + L E R AG+V E+ + +G S+G G VEF +A ++I L
Sbjct: 150 RVYVGNLSYDVKYRDLMEFMRGAGEVLFAEVLVTPNGISKGCGIVEFGSYDDAQRAIRDL 209
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
+ L R + +R DR + G +P + + G G P
Sbjct: 210 SEVPLLGRPVFIREDREGEARFGATPVPGKIGAAMAGQGYTTQP 253
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 22/188 (11%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK-----EAVEDKGGRRNMGGGGGV 123
G+ +GS V ++S A++ + +E GRKL ++ + +G R G
Sbjct: 315 GRAKGSGTVVYESVKDADNAISMYNGYEWFGRKLEVRLDRYAGSAPPRGARGGFRGSARP 374
Query: 124 DRDLSALLQNNSSKF------------GNTYGLSPQ----FLESLGINCPLINKVFVANL 167
R +++ + + G +Y P F G + P ++ V NL
Sbjct: 375 PRGGGGGGRSSYTDYDAGGGDTAMVDGGQSYAGVPTGPRGFSAYAGYDVPPSQQIMVGNL 434
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
+ + L E+F G V+ E+ + +S+G G V+F EA +I+
Sbjct: 435 PWSTANEDLVELFETTGTVQEAEVLFEGQ-RSKGAGVVQFADVAEAETAIAKFQGYVYGG 493
Query: 228 RRITVRMD 235
R + VR +
Sbjct: 494 RPLEVRFN 501
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 70 KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSA 129
+PRG A V F++P+ AV ++ E G+ L + A + K R M + +
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRA-QKKAEREAM-----LRAQMEQ 520
Query: 130 LLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189
L + K + +FV NL VDE +LRE F G + ++
Sbjct: 521 LRNDRMQKLQDV-------------------NLFVKNLSDDVDENRLREEFSRFGTITSL 561
Query: 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240
I D+ G S+GFG V F HP EA+++++ +N + + ++ I V + + D+
Sbjct: 562 RIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMNQRIVGQKPIYVALAQRKDQ 612
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 50/196 (25%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFE---TKGRKLVIKEA 107
S+VG V V + D T + G A V FQ+P+ +A++ + +E TK + + I
Sbjct: 196 FSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDVLQFYEGPLTKNKPIRIMWK 255
Query: 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
D RRN G +F+ NL
Sbjct: 256 RSDPSQRRNPEG-----------------------------------------NIFIKNL 274
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-----MLNN 222
D +D K L + F GKV + ++A D G S G+ V + A IS +LN
Sbjct: 275 DKSIDNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNG 334
Query: 223 QNLFERRITVRMDRVA 238
Q ++ R +R A
Sbjct: 335 QKVYVGEFRPRREREA 350
>gi|428170688|gb|EKX39611.1| hypothetical protein GUITHDRAFT_160003 [Guillardia theta CCMP2712]
Length = 182
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 40/180 (22%)
Query: 57 DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
+V + +I+ + G+ +G AIVE+ SP+ ++A+ +++ E GR + ++E
Sbjct: 40 NVVHADIMYEAGGRSKGCAIVEYASPEDAQRAIAELNDTEMMGRLIFVRE---------- 89
Query: 117 MGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKL 176
DR+ + +V+V NL ++ + L
Sbjct: 90 -------DREGFKGGMGTGGR-----------------------RVYVGNLSWECKWQDL 119
Query: 177 REVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
++ R AG V + ++ DG+S+G G VEF P EAV++I LN L R I VR DR
Sbjct: 120 KDHMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVREDR 179
Score = 43.5 bits (101), Expect = 0.28, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
H+ T G+V + +++ G+ +G +VEF SP+ +A+ +++ E GR + ++E E
Sbjct: 122 HMRTAGNVLHADVMTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVREDRE 180
Score = 42.7 bits (99), Expect = 0.57, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV---EIALDKDGKSRGFGTVEFDH 209
G+ C +V+V NL + + L++ R + NV +I + G+S+G VE+
Sbjct: 9 GLGC----RVYVGNLSWDAQWQDLKDHMRGPNQNLNVVHADIMYEAGGRSKGCAIVEYAS 64
Query: 210 PVEAVQSISMLNNQNLFERRITVRMDR 236
P +A ++I+ LN+ + R I VR DR
Sbjct: 65 PEDAQRAIAELNDTEMMGRLIFVREDR 91
Score = 40.0 bits (92), Expect = 3.5, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL WQ+L+D R G++ A++ + KG GLV F S A RAI +
Sbjct: 105 VYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKG-CGLVEFSSPEEAVRAIQEL 163
Query: 573 DRTRIDGKIIDV 584
+ T + G++I V
Sbjct: 164 NETELMGRMIFV 175
>gi|71028102|ref|XP_763694.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350648|gb|EAN31411.1| hypothetical protein, conserved [Theileria parva]
Length = 223
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ VGDV +I+ D GK +G IVEF D +A+ +++ R++ ++E E+
Sbjct: 55 HMKQVGDVLRADIIEDYDGKSKGCGIVEFADEDSASRAIAELNDTMILDRQIFVREDREN 114
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
N G G L + + S G + G S V V NL +K
Sbjct: 115 Y----NTFRGYGRFFRLRPRIDSPSGYSGRSSGRSG-------------TSVIVTNLQWK 157
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
K+L+++F+ G V ++ +DG+S+G G V F + A ++I+M N+ L R+I
Sbjct: 158 TSWKELKDLFKSCGLVLRADVLTHEDGRSKGVGKVVFANEYSARKAITMYNDYVLDGRKI 217
Query: 231 TVRMD 235
VR++
Sbjct: 218 GVRLE 222
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 21/106 (19%)
Query: 152 LGINCPLIN---------------------KVFVANLDYKVDEKKLREVFRLAGKVENVE 190
NCP IN +V+V NL +KV + L++ + G V +
Sbjct: 7 FATNCPFINLLKLFLYSRSFLPLKICSNKRRVYVGNLSWKVRWQDLKDHMKQVGDVLRAD 66
Query: 191 IALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
I D DGKS+G G VEF A ++I+ LN+ + +R+I VR DR
Sbjct: 67 IIEDYDGKSKGCGIVEFADEDSASRAIAELNDTMILDRQIFVREDR 112
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 7/73 (9%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
+V+V NL +W+EL+D F++CG + A++ + KG +G V F +E++A++AI M
Sbjct: 148 SVIVTNLQWKTSWKELKDLFKSCGLVLRADVLTHEDGRSKG-VGKVVFANEYSARKAITM 206
Query: 572 MDRTRIDGKIIDV 584
+ +DG+ I V
Sbjct: 207 YNDYVLDGRKIGV 219
>gi|429328186|gb|AFZ79946.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 191
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 30/190 (15%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ VGDV +I+ D G+ +G IVEF + +A+++++ R++ ++E E
Sbjct: 26 HMKQVGDVIRADIIEDYIGRSKGCGIVEFADEETAARAISELNDTLLMDRQIFVREDREG 85
Query: 111 -----KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
K RR+ D L + N G++ V V
Sbjct: 86 YIPRAKAERRS---------DTQGDLDDGKDLGQNLLGVA----------------VIVT 120
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NL +K K L+++FR G V ++ +DG+S+G G V F + A +ISM N+ L
Sbjct: 121 NLQWKTTWKTLKDLFRNCGMVVRADVLTHEDGRSKGVGKVVFADEIGAKNAISMYNDHML 180
Query: 226 FERRITVRMD 235
RRI VR +
Sbjct: 181 DGRRIGVRFE 190
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV ++L++ + G V +I D G+S+G G VEF A ++IS L
Sbjct: 8 RVYVGNLSWKVKWQELKDHMKQVGDVIRADIIEDYIGRSKGCGIVEFADEETAARAISEL 67
Query: 221 NNQNLFERRITVRMDR 236
N+ L +R+I VR DR
Sbjct: 68 NDTLLMDRQIFVREDR 83
Score = 50.1 bits (118), Expect = 0.004, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 497 NPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KG 550
+ + LD + + Q N+ V+V NL TW+ L+D FRNCG + A++ +
Sbjct: 97 DTQGDLDDGKDLGQ--NLLGVAVIVTNLQWKTTWKTLKDLFRNCGMVVRADVLTHEDGRS 154
Query: 551 KGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
KG +G V F E AK AI M + +DG+ I V F
Sbjct: 155 KG-VGKVVFADEIGAKNAISMYNDHMLDGRRIGVRF 189
Score = 40.0 bits (92), Expect = 3.5, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL + WQEL+D + GD+ A+I + KG G+V F E TA RAI +
Sbjct: 9 VYVGNLSWKVKWQELKDHMKQVGDVIRADIIEDYIGRSKG-CGIVEFADEETAARAISEL 67
Query: 573 DRT 575
+ T
Sbjct: 68 NDT 70
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G VT + D++GK RG V +++ + KAV +H + KG L + A +
Sbjct: 258 FSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYVARAQKR- 316
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
V+RD + K+ T L+ G+N +++ NLD +
Sbjct: 317 -----------VERDAELRRAHEQQKYETT-------LKYQGVN------LYIKNLDDEY 352
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+ F G + + ++ D G SRGFG V F P EA ++++ +N + L + +
Sbjct: 353 DDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLY 412
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 413 VSLAQRKD 420
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A+D G S+G+G V + A +I +N
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVN 206
Query: 222 NQNLFERRITV 232
L ++ + V
Sbjct: 207 GMQLNDKVVFV 217
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NL +V ++L E+F G V + + D+ GK RGFG V +++ A +++ L+
Sbjct: 240 LYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALH 299
Query: 222 NQN-----LFERRITVRMDRVAD 239
+++ L+ R R++R A+
Sbjct: 300 DKDYKGNILYVARAQKRVERDAE 322
>gi|145350218|ref|XP_001419511.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579743|gb|ABO97804.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 194
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 58 VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR--R 115
V + +IL G+ +G IV F S + +KA+ MH E RK+ ++E E + G R
Sbjct: 43 VRFADILTSRDGRSKGCGIVTFNSSEDAKKAIETMHDTEIGERKIFVREDREGERGNDLR 102
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
N G D S V+V NL + ++
Sbjct: 103 NRIGPSATSPDAS---------------------------------VYVGNLPWSTRWQE 129
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
L+++FR G V + ++ + DG+SRG+G V F P A +I LN L +R + VR D
Sbjct: 130 LKDIFRKVGNVAHADVTMGFDGRSRGWGVVTFMDPQCAQVAIERLNGTMLNDRALIVRRD 189
Query: 236 RVA 238
A
Sbjct: 190 ERA 192
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 157 PLIN---KVFVANLDYKVDEKKLREVFRLAGKVENVEIA---LDKDGKSRGFGTVEFDHP 210
P +N KV+V NL Y + L++ F A E+V A +DG+S+G G V F+
Sbjct: 8 PAVNADTKVYVGNLPYGCSWQDLKDHFSNAMGGESVRFADILTSRDGRSKGCGIVTFNSS 67
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVADR 240
+A ++I +++ + ER+I VR DR +R
Sbjct: 68 EDAKKAIETMHDTEIGERKIFVREDREGER 97
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 519 VVVKNLPPTITWQELRDKFRNC---GDIKFAEI------KGKGDIGLVRFDSEWTAKRAI 569
V V NLP +WQ+L+D F N ++FA+I + KG G+V F+S AK+AI
Sbjct: 16 VYVGNLPYGCSWQDLKDHFSNAMGGESVRFADILTSRDGRSKG-CGIVTFNSSEDAKKAI 74
Query: 570 DMMDRTRIDGKIIDV 584
+ M T I + I V
Sbjct: 75 ETMHDTEIGERKIFV 89
>gi|255965740|gb|ACU45165.1| G-strand telomere-binding protein [Prorocentrum minimum]
Length = 199
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE-AV 108
SH+++ G+V EI D G+ +G+ IVE+++P+ A+ ++ R + ++E
Sbjct: 22 SHMASAGEVVRAEIFEQDDGRSKGAGIVEYRTPEAAENAIATLNDSSLGARPIFVREDRG 81
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
KG ++ G DRD K N ++P L ++V NL
Sbjct: 82 SSKGKGKDKDKDRGYDRDKGKGKGKGKGKGKN---VNPDDEGRL---------LYVGNLP 129
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
++ + +++VF+ AG V V+IA DG+S+G+ TV ++ +A +I LN ++ R
Sbjct: 130 FRCSWQDVKDVFKEAGPVIRVDIAEGPDGRSKGYATVLYETEDQAQGAIDRLNGRDFQGR 189
Query: 229 RITVRMD 235
+TVRM+
Sbjct: 190 SLTVRME 196
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
++C +V+V N+D+KV +++L+ AG+V EI DG+S+G G VE+ P A
Sbjct: 2 VDC----RVYVGNIDWKVSQRELQSHMASAGEVVRAEIFEQDDGRSKGAGIVEYRTPEAA 57
Query: 214 VQSISMLNNQNLFERRITVRMDR 236
+I+ LN+ +L R I VR DR
Sbjct: 58 ENAIATLNDSSLGARPIFVREDR 80
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 39/197 (19%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + +++ DD G RG V FQ+ +A+ +M+ K +L +
Sbjct: 113 TLYE--HFSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N RD A LQN +S+F N Y +
Sbjct: 170 -------GPFKNR-------RDREAELQNKASEFTNIY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N ++D++KL+E F GK+ +V++ D GKS+GFG V FD A +++ ++N +
Sbjct: 195 KNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGRE 254
Query: 225 LFERRITV-RMDRVADR 240
+F +++ V R + A+R
Sbjct: 255 IFGQQVFVGRAQKKAER 271
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D +GK +G V F + + ++AV+ ++ E G+++ + A + K
Sbjct: 210 FSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRA-QKK 268
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L L Q + G K++V NLD
Sbjct: 269 AERQA---------ELKQLFEQRKQERSWRVRG----------------TKIYVKNLDET 303
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+DE+KLR+ F G + V++ + ++G+SRGFG + F P EA ++++ +N + L
Sbjct: 304 IDEEKLRKAFSSFGSIIRVKV-MQEEGRSRGFGLICFSSPEEAARAMAEMNGRLL 357
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F + GK+ + ++ D G SRG+G V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAIE 155
Query: 219 MLNNQNLFERRITV-----RMDRVAD 239
+N L + R+ V R DR A+
Sbjct: 156 EMNGVLLKDFRLFVGPFKNRRDREAE 181
>gi|399217972|emb|CCF74859.1| unnamed protein product [Babesia microti strain RI]
Length = 209
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
HL G V +I+ D G+ +G +VEF +P+ A+ +++ R++ ++E E+
Sbjct: 26 HLKQAGKVLRADIIEDYEGRSKGCGLVEFSTPEEAMTAIKELNDTMLMDRRIFVREDREE 85
Query: 111 KGG---RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
G RR D+D + N + + G S + G+ C V+V NL
Sbjct: 86 NGTYSQRR--------DKDFRSKQDNGYDRNNSRDGYSKGNYSNDGV-C-----VYVTNL 131
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
++ L+++F+ G V V++ DG+S+G V F A ++IS N+ +
Sbjct: 132 QWRTPWHSLKDLFKTCGDVIRVDVLTYDDGRSKGVARVIFGDEASARKAISTYNDYLVDG 191
Query: 228 RRITVRMD 235
RRI VR D
Sbjct: 192 RRINVRFD 199
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV + L++ + AGKV +I D +G+S+G G VEF P EA+ +I L
Sbjct: 8 RVYVGNLSWKVRWQDLKDHLKQAGKVLRADIIEDYEGRSKGCGLVEFSTPEEAMTAIKEL 67
Query: 221 NNQNLFERRITVRMDR 236
N+ L +RRI VR DR
Sbjct: 68 NDTMLMDRRIFVREDR 83
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDM 571
V V NL W L+D F+ CGD+ ++ + KG + V F E +A++AI
Sbjct: 125 CVYVTNLQWRTPWHSLKDLFKTCGDVIRVDVLTYDDGRSKG-VARVIFGDEASARKAIST 183
Query: 572 MDRTRIDGKIIDVTF 586
+ +DG+ I+V F
Sbjct: 184 YNDYLVDGRRINVRF 198
>gi|209882353|ref|XP_002142613.1| RNA recognition domain-containing protein [Cryptosporidium muris
RN66]
gi|209558219|gb|EEA08264.1| RNA recognition domain-containing protein [Cryptosporidium muris
RN66]
Length = 199
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 22/190 (11%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G V ++ D+ G+ RG +VE+ +P+ ++A+ +++ R + ++E E+
Sbjct: 26 HMRQAGSVVRADVFEDEVGRSRGCGVVEYSAPEEAQRAIAELNNSTILDRLIFVREDREE 85
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN-----KVFVA 165
+ R S K+G+ G S + + PL + +VFV
Sbjct: 86 ETNR----------------FGRKSGKWGHNRGHSSR-TRTHAPRPPLKDEHRGRQVFVT 128
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NL +K L +VF G +++ E+ DG+SRG TV F A ++ LN++ +
Sbjct: 129 NLAWKTTRDDLAKVFSEIGPLDSCEVFYFDDGRSRGIATVVFKDLSHAQLAVEKLNDREV 188
Query: 226 FERRITVRMD 235
R I VR+D
Sbjct: 189 DGREILVRLD 198
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +K L++ R AG V ++ D+ G+SRG G VE+ P EA ++I+ L
Sbjct: 8 RVYVGNLPWKAKWHDLKDHMRQAGSVVRADVFEDEVGRSRGCGVVEYSAPEEAQRAIAEL 67
Query: 221 NNQNLFERRITVRMDR 236
NN + +R I VR DR
Sbjct: 68 NNSTILDRLIFVREDR 83
>gi|320580860|gb|EFW95082.1| poly(A+) RNA-binding protein, putative [Ogataea parapolymorpha
DL-1]
Length = 405
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 45 SLYQISHL-STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
+ Y + L VG+V +++ G+ RG VEF + DLV++A++K R +GR++
Sbjct: 81 TWYDLKDLFREVGEVVRADVVTS-RGRSRGMGTVEFANKDLVQEAISKFDRTMYEGREIF 139
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
++E DL + N+ + P E +VF
Sbjct: 140 VRE-------------------DLPPPEKENTGREERRRNAPPPSTEGY--------EVF 172
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
+ NL + V + L+++F+ G + ++ D G+S+GFGTV F++ +A ++I+ N
Sbjct: 173 IGNLPFSVRWQDLKDLFKSCGPIIRADVREDHRGRSKGFGTVIFENSEDADRAIADFNGY 232
Query: 224 NLFERRITVRM 234
++ RRI VR+
Sbjct: 233 DMDGRRIEVRL 243
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP ++ WQ+L+D F++CG I A++ + KG G V F++ A RAI
Sbjct: 171 VFIGNLPFSVRWQDLKDLFKSCGPIIRADVREDHRGRSKG-FGTVIFENSEDADRAIADF 229
Query: 573 DRTRIDGKIIDV 584
+ +DG+ I+V
Sbjct: 230 NGYDMDGRRIEV 241
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N +FV NL Y L+++FR G+V ++ + G+SRG GTVEF + ++IS
Sbjct: 69 NSIFVGNLPYHTTWYDLKDLFREVGEVVRADVVTSR-GRSRGMGTVEFANKDLVQEAISK 127
Query: 220 LNNQNLFERRITVRMD 235
+ R I VR D
Sbjct: 128 FDRTMYEGREIFVRED 143
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 509 NQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEW 563
++S+ +++ V NLP TW +L+D FR G++ A++ + +G +G V F ++
Sbjct: 61 SKSNRAYENSIFVGNLPYHTTWYDLKDLFREVGEVVRADVVTSRGRSRG-MGTVEFANKD 119
Query: 564 TAKRAIDMMDRTRIDGKIIDV 584
+ AI DRT +G+ I V
Sbjct: 120 LVQEAISKFDRTMYEGREIFV 140
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSAL-----LQNNSSKF 138
++R V + HR +KG VI E ED R + G D D + Q N
Sbjct: 195 IIRADVREDHRGRSKGFGTVIFENSED--ADRAIADFNGYDMDGRRIEVRLGKQFNKEPQ 252
Query: 139 GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK 198
G T + +F+ + + +F NL ++ E L ++F V+ E+ D +
Sbjct: 253 GPTESRNSEFVAGVVGQGEPNDTIFADNLPWETSETDLFDLFGSIASVKRAELQFDDLNR 312
Query: 199 SRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239
G V+F A+ +++ L+N RR+ V + D
Sbjct: 313 PAGTAVVQFQELDGAIAAVNQLDNYEYGRRRLHVSFAKRGD 353
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ G+VT I D+ G+ RG V F++ + +KAV +H E GRKL + A
Sbjct: 246 VKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRA- 304
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ K R + +L + + + Y G+N +++ NL+
Sbjct: 305 QKKAER---------EEELRKSYEQAKVEKMSKYQ---------GVN------LYIKNLE 340
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+D+++LR+ F G + + ++ D+ G S+GFG V F P EA ++++ +NN+ + +
Sbjct: 341 DDIDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSK 400
Query: 229 RITVRM 234
+ V +
Sbjct: 401 PLYVSL 406
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ G+ +G V +++ + A+ ++ +K+ + + K
Sbjct: 152 FAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRK 211
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + L+ ++F N ++V NLD +V
Sbjct: 212 AS----------SRERQSKLEEMKAQFTN---------------------IYVKNLDPEV 240
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ ++F G V + I D+ G+SRGFG V F+ EA +++ L++ R++
Sbjct: 241 TQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLF 300
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 301 VSRAQKKAER 310
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD ++D K L + F G V + ++A D+ G+S+G+G V ++ A +I +N
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVN 193
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 194 GMLLNDKKVYV 204
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+VT + D+ G+ RG V F++ + +KAV+ +H + KGRKL + A + K
Sbjct: 253 FTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRA-QKK 311
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R SK+ G+N +++ NL+ V
Sbjct: 312 SEREE-----ELRRSYEQAKMEKMSKYQ-------------GVN------LYIKNLEDDV 347
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KLR+ F G + + ++ + G S+GFG V F P EA ++++ +NN+ + + +
Sbjct: 348 DDEKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLY 407
Query: 232 VRM 234
V +
Sbjct: 408 VSL 410
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ G+ +G V +++ + A+ ++ +K+ + V K
Sbjct: 160 FAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKK 219
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D A L +F N V+V N+D +
Sbjct: 220 --------------DRQAKLDEQKKQFTN---------------------VYVKNIDPEA 244
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ + RE+F G V + + D++G+SRGFG V F+ EA +++ L++ + R++
Sbjct: 245 NDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLF 304
Query: 232 V 232
V
Sbjct: 305 V 305
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G V + ++A D+ G+S+G+G V ++ A +I +N
Sbjct: 142 IFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVN 201
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 202 GMLLNDKKVYV 212
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 27/181 (14%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L+++ G +T +++ D G RG V F+ P KAV+++H E+ K
Sbjct: 196 DKELFEM--FEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKT 253
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ K R+N +L + + N Y GIN +
Sbjct: 254 YYVGRAQKKAERQN---------ELKRKFEQYKIERMNRYQ---------GIN------L 289
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NLD +D++ LR F + G + + ++ +D DG+S+GFG V F P EA ++++ +NN
Sbjct: 290 YVKNLDDTIDDEHLRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNN 348
Query: 223 Q 223
+
Sbjct: 349 R 349
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+TG+ +G V F +++ K++ G+K+ + V
Sbjct: 110 FSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFV--- 166
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR+ DR+ + LG L V++ N+D V
Sbjct: 167 -GRK--------DRE-----------------------KELGQKAKLFTNVYIKNIDENV 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++K+L E+F G + + ++ DG SRGFG V F+ P EA +++S L+
Sbjct: 195 NDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELH 244
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G+S+G+G V FD A QSI
Sbjct: 89 VGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIE 148
Query: 219 -----MLNNQNLFERRITVRMDR 236
+LN + +F R R DR
Sbjct: 149 KVNGMLLNGKKVFVGRFVGRKDR 171
>gi|159463672|ref|XP_001690066.1| G-strand telomere binding protein 1 [Chlamydomonas reinhardtii]
gi|520519|gb|AAA21869.1| Gbp1p [Chlamydomonas reinhardtii]
gi|158284054|gb|EDP09804.1| G-strand telomere binding protein 1 [Chlamydomonas reinhardtii]
Length = 221
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 8/191 (4%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G+V Y ++ DD G+ +G IVEF+SP+ A+ ++ E GR+++++E ED+
Sbjct: 31 FRECGNVVYTNVMRDDDGRSKGWGIVEFESPEEALHAIQTLNGAELGGRRILVREDREDR 90
Query: 112 GGRRNMGGGGG------VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
++ G G + N + G E+ G + L +V V
Sbjct: 91 DVKQADGAPGAPAERAPRPARGAGRGAANGGRGAGRGGRGAGAPEATGESSGL--QVVVQ 148
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+ + ++L+++F G V+ ++ DG+SRG+GTV+F A +++ + L
Sbjct: 149 GIPWAYTWRELKDMFAEVGGVDRADVVTGYDGRSRGYGTVKFTTKEAAEAAVARYHESEL 208
Query: 226 FERRITVRMDR 236
RR+ V +DR
Sbjct: 209 EGRRLAVFIDR 219
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
L + FV NL +K + L++ FR G V + D DG+S+G+G VEF+ P EA+ +I
Sbjct: 9 LGKRCFVGNLAWKTSWQDLKDKFRECGNVVYTNVMRDDDGRSKGWGIVEFESPEEALHAI 68
Query: 218 SMLNNQNLFERRITVRMDR 236
LN L RRI VR DR
Sbjct: 69 QTLNGAELGGRRILVREDR 87
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V NL +WQ+L+DKFR CG++ + + + KG G+V F+S A AI +
Sbjct: 13 CFVGNLAWKTSWQDLKDKFRECGNVVYTNVMRDDDGRSKG-WGIVEFESPEEALHAIQTL 71
Query: 573 DRTRIDGKII 582
+ + G+ I
Sbjct: 72 NGAELGGRRI 81
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 33/192 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T + + D GK +G V F++ + KAV++++ E G+K+ + A + +
Sbjct: 252 FEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKR 311
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVANL 167
L+ ++ NT LE L G+N +F+ NL
Sbjct: 312 -----------------ERLEELKKQYENTR------LEKLSKYQGVN------LFIKNL 342
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D +D +KL E F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + ++
Sbjct: 343 DDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYG 402
Query: 228 RRITVRMDRVAD 239
+ + V + + D
Sbjct: 403 KPLYVALAQRKD 414
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 124/300 (41%), Gaps = 63/300 (21%)
Query: 2 TSPVTETELVEQIA----HQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGD 57
++PV TE EQ A + Q +T A L V + + +A L++I S +G
Sbjct: 20 SAPVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSV-NEALLFEI--FSPIGQ 76
Query: 58 VTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
V + + D T K G A V F + KA+ ++ +GR I + D RRN
Sbjct: 77 VASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRN 136
Query: 117 MGGGGGVDRDLSALLQNNS-----SKFG---------NTYGLSPQF------------LE 150
G G ++L + N + + FG + G+S F
Sbjct: 137 -GDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAA 195
Query: 151 SLGINCPLIN---------------------------KVFVANLDYKVDEKKLREVFRLA 183
+N L+N V+ N+D E++ +++F
Sbjct: 196 IENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAY 255
Query: 184 GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLD 242
GK+ ++ + D +GKS+GFG V F++ AV+++ LN++ + ++I V R + +RL+
Sbjct: 256 GKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLE 315
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 42/188 (22%)
Query: 56 GDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI-------KEA 107
GDVT VE++ D TG+ RG A V + +AV K + +E +GR L + K++
Sbjct: 137 GDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEKFNGYEYQGRTLRVNSGPPPPKDS 196
Query: 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
+GG RN G N N+VFV NL
Sbjct: 197 FAPRGGFRNEKPSG---------------------------------NYNSANRVFVGNL 223
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
+ D+ L ++F GKV ++ D++ G+SRGFG V P E ++IS L+ ++
Sbjct: 224 PWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMD 283
Query: 227 ERRITVRM 234
R+I V +
Sbjct: 284 GRQIKVTL 291
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
KVFV NL + VD +L E+F+ +G V VE+ D+ G+SRGF V +A +++
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 220 LNNQNLFERRITV 232
N R + V
Sbjct: 174 FNGYEYQGRTLRV 186
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 38/197 (19%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
SLY S G++ +I D+ G P+G V F++ D +A+ +
Sbjct: 116 SLYDT--FSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIAR------------- 160
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
+ +L N+ F + + +E +G V+V
Sbjct: 161 ----------------------VDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYV 198
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++++E+ AGK+ ++++ D +GKS+GFG V F+ P EA +++++LN +
Sbjct: 199 KNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKE 258
Query: 225 LFERRITV-RMDRVADR 240
+ RR+ R + A+R
Sbjct: 259 IGGRRLWAGRAKKRAER 275
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G + ++++ D GK +G V F++P+ +AVN ++ E GR+L A
Sbjct: 214 CAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRA---- 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ V ++ Q ++F G+N +++ NLD +
Sbjct: 270 --KKRAERAAEVKAEIEKKRQERINRF-------------QGVN------LYIKNLDDPI 308
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LRE F G + + ++ D G S+GFG V F P EA ++++ +N + L + +
Sbjct: 309 DDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLY 368
Query: 232 VRM 234
V +
Sbjct: 369 VAL 371
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 49/201 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ ST G V + + D T + G A V FQ P KA++ M+ KGR
Sbjct: 26 EAMLYE--KFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTMNFDPIKGRP 83
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I D R+ S GN
Sbjct: 84 CRIMWQQRDPSLRK--------------------SGVGN--------------------- 102
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + +IA D+ G +G+G V F+ A+++I+
Sbjct: 103 IFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVD 162
Query: 219 --MLNNQNLFERRITVRMDRV 237
+LN++ +F R + +R+
Sbjct: 163 GMLLNDKKVFVGRWMSKKERI 183
>gi|402222407|gb|EJU02474.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 554
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + G+V + E+L TG +G IVE+ + D +KA+ ++ GR + I+E
Sbjct: 157 LEFMRGAGEVLFAEVLVTPTGVSKGCGIVEYANSDDAQKAIRELGDQPLLGRPIFIREDR 216
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNS------SKFGNTYGLSPQFLESLGINCPLINKV 162
E+ G V ++ + N + S G Y G N++
Sbjct: 217 EEASRFGATPVPGKVGMAMAGMGMNATVPPPRPSWHGGGYPGGAGGAGGGGGAGGPGNQL 276
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NL Y+ + L+++FR AG + +I DG+ +G G V ++ +A +ISM +
Sbjct: 277 YVGNLPYQAGWQDLKDLFRQAGNIIRADINFGADGRPKGSGVVIYETAADAQAAISMFSG 336
Query: 223 QNLFERRITVRMDRVA 238
+ + R++ VR DR A
Sbjct: 337 YDWYGRQLEVREDRFA 352
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+++V NL Y + L E R AG+V E+ + G S+G G VE+ + +A ++I
Sbjct: 140 NRLYVGNLSYDCTYRDLLEFMRGAGEVLFAEVLVTPTGVSKGCGIVEYANSDDAQKAIRE 199
Query: 220 LNNQNLFERRITVRMDR-VADRLDG-PVRLPEGLKSIGMGLGANGAP 264
L +Q L R I +R DR A R PV G+ GMG+ A P
Sbjct: 200 LGDQPLLGRPIFIREDREEASRFGATPVPGKVGMAMAGMGMNATVPP 246
>gi|440794423|gb|ELR15584.1| hypothetical protein ACA1_164640 [Acanthamoeba castellanii str.
Neff]
Length = 212
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAV---NKMHRFETKGRKLVIKEA 107
H+ G+VT ++ D+TG+ +G IVE+ +P+ + A+ N ET+ A
Sbjct: 44 HMRKAGNVTRADVFIDETGRSKGCGIVEYSTPEEAQNAIKTLNDTKLDETERLIFSCPAA 103
Query: 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
G ++ V+ L+ VF+ NL
Sbjct: 104 AAVWGEVWSVEAVEAVEASTLTLILTLILI-----------------------LVFIGNL 140
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
Y + L++ FR AG + ++ LD G+S+G GTV F+ P +A ++I M +N + +
Sbjct: 141 PYTTSWQDLKDRFRQAGNIIRADVLLDTTGRSKGQGTVLFESPGDAQKAIRMFDNTDFQQ 200
Query: 228 RRITVRMDRVA 238
R ITV D+ A
Sbjct: 201 RIITVHEDKFA 211
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+V+V NL ++ + L++ R AG V ++ +D+ G+S+G G VE+ P EA +I
Sbjct: 25 NRVYVGNLPWQTSWQDLKDHMRKAGNVTRADVFIDETGRSKGCGIVEYSTPEEAQNAIKT 84
Query: 220 LNNQNLFE 227
LN+ L E
Sbjct: 85 LNDTKLDE 92
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP T +WQ+L+D+FR G+I A++ + KG G V F+S A++AI M
Sbjct: 135 VFIGNLPYTTSWQDLKDRFRQAGNIIRADVLLDTTGRSKGQ-GTVLFESPGDAQKAIRMF 193
Query: 573 DRTRIDGKIIDV 584
D T +II V
Sbjct: 194 DNTDFQQRIITV 205
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQS +A+ M+ KG +L +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A LQN +++F N Y +
Sbjct: 170 -------GPFKNR-------KDRQAELQNKANEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L+E+F GK+ +V++ D G+S+GFG V FD A +++ ++N ++
Sbjct: 195 KNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKD 254
Query: 225 L 225
L
Sbjct: 255 L 255
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D G+ +G V F S + ++AV M+ + G+ L + A + K
Sbjct: 210 FSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRA-QKK 268
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q ++ G+ K+++ NLD
Sbjct: 269 AERQA---------ELKLMFEQMKQERYRRFRGV----------------KLYIKNLDDS 303
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D+++LR F G + V++ + ++G+S+GFG + F P EA +++ +N + L
Sbjct: 304 IDDERLRREFSSFGSISRVKV-MKEEGRSKGFGLICFSSPEEATKAMVEMNGRIL 357
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ + + GK +G V F PD +AV MH E GR L A + K
Sbjct: 200 FSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRA-QRK 258
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L L+ Q E L P +N ++V NLD +
Sbjct: 259 EERQE---------ELKQRLEK-------------QRAERLSKYVPGVN-LYVKNLDDNI 295
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++L+E F G + + ++ D +G+S+GFG V F P +A ++++ +N
Sbjct: 296 DDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMN 345
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D+K+L + F GK+ + +IA+D+ G S+G+G V F+ A ++I +N
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKIN 150
Query: 222 NQNLFERRITV 232
+ +R + V
Sbjct: 151 GMMINDRVVYV 161
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 78/190 (41%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S +G + +I D+ G +G V F+ + +A+ K++ R + + + +
Sbjct: 109 FSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSS 168
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR ++ S K N ++V N
Sbjct: 169 ------------DR------KSASGKL-------------------RFNNIYVKNFPPDT 191
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++KLR++F G++++ + + +GKS+GFG V F P A Q++ +++ + + R +
Sbjct: 192 TDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALY 251
Query: 232 V-RMDRVADR 240
R R +R
Sbjct: 252 ASRAQRKEER 261
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFA------EIKGKGDIGLVRFDSEWT 564
S + + + VKN PP T ++LRD F G+IK E K KG G V F
Sbjct: 174 SGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKG-FGFVCFHDPDH 232
Query: 565 AKRAIDMMDRTRIDGKII 582
A++A+ +M I+G+ +
Sbjct: 233 AEQAVRVMHGKEINGRAL 250
>gi|219130905|ref|XP_002185593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402933|gb|EEC42891.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 222
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 18/195 (9%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ G+V + E++ + G+ +G IVE+ + + ++A+ + E GR + ++E E
Sbjct: 38 HMRQAGEVVHAEVIMEYNGRSKGCGIVEYATDEEAQEAIKTLTDTELNGRMIFVREDRET 97
Query: 111 -------KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+G R G + S +G G+ +N ++F
Sbjct: 98 PNQGASYQGESRGWIGSWRGRGRGGRGI----SSYGGGRGIGR-------LNVDAETQLF 146
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V NL ++L++ FR G ++ E+ G+S+GFGTV+F +A +I+ LN
Sbjct: 147 VGNLAQSTTWRELKDHFRQCGDIQRAEVKNGPAGQSKGFGTVQFLKKSDAKDAITQLNGS 206
Query: 224 NLFERRITVRMDRVA 238
L I VR+D+ A
Sbjct: 207 ELQGNVIEVRLDQKA 221
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 156 CPLINK-VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
C N+ V+V NL + V + L++ R AG+V + E+ ++ +G+S+G G VE+ EA
Sbjct: 14 CSFFNRRVYVGNLSWSVAWQSLKDHMRQAGEVVHAEVIMEYNGRSKGCGIVEYATDEEAQ 73
Query: 215 QSISMLNNQNLFERRITVRMDR 236
++I L + L R I VR DR
Sbjct: 74 EAIKTLTDTELNGRMIFVREDR 95
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 513 NIERDT-VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTA 565
N++ +T + V NL + TW+EL+D FR CGDI+ AE+K KG G V+F + A
Sbjct: 138 NVDAETQLFVGNLAQSTTWRELKDHFRQCGDIQRAEVKNGPAGQSKG-FGTVQFLKKSDA 196
Query: 566 KRAIDMMDRTRIDGKIIDV 584
K AI ++ + + G +I+V
Sbjct: 197 KDAITQLNGSELQGNVIEV 215
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL ++ WQ L+D R G++ AE+ + KG G+V + ++ A+ AI +
Sbjct: 21 VYVGNLSWSVAWQSLKDHMRQAGEVVHAEVIMEYNGRSKG-CGIVEYATDEEAQEAIKTL 79
Query: 573 DRTRIDGKIIDV 584
T ++G++I V
Sbjct: 80 TDTELNGRMIFV 91
>gi|384249443|gb|EIE22925.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 368
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 51 HLSTVGDVTYVEILNDDT-GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
H G+V YV++L + G+ +G IVEF++ + +A+N +H E GR++ ++E E
Sbjct: 75 HFKQAGNVAYVDVLREGRDGRSKGCGIVEFETAEEAAEAINTLHLSEIDGREIYVREDRE 134
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
D + G G + + + G + P S+G +V+V NL +
Sbjct: 135 DFDLKAASEGPSG-----TGVAKRGRPSGGGGHADGPV---SVG------KRVYVNNLSH 180
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ L++ FR AG V + + +DG+S+G G VEF +A+++IS+L+N L
Sbjct: 181 DTTWQILKDHFRQAGNVVHAAVLTYEDGQSKGCGIVEFQSSNDALRAISLLSNSTLDGNT 240
Query: 230 ITVRMDR 236
I VR DR
Sbjct: 241 IYVREDR 247
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 11/196 (5%)
Query: 45 SLYQI--SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ +QI H G+V + +L + G+ +G IVEFQS + +A++ + G +
Sbjct: 182 TTWQILKDHFRQAGNVVHAAVLTYEDGQSKGCGIVEFQSSNDALRAISLLSNSTLDGNTI 241
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
++E ED R + + G P K+
Sbjct: 242 YVREDREDTAVRGRS---------PRGERGGGGGRGRGGDRGGERGERGGGGAAPDGTKI 292
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
V L + V+ + L+++ + G +IA DGKSRGFGT+ F P +A +I L
Sbjct: 293 VVHGLPWSVEWQDLKDLAKQYGDAVKADIAKRSDGKSRGFGTIVFKTPEDAQTAIQKLTG 352
Query: 223 QNLFERRITVRMDRVA 238
R +T ++D A
Sbjct: 353 LEFQGRVLTAKLDEFA 368
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL TWQ L+D FR G++ A + + KG G+V F S A RAI ++
Sbjct: 173 VYVNNLSHDTTWQILKDHFRQAGNVVHAAVLTYEDGQSKG-CGIVEFQSSNDALRAISLL 231
Query: 573 DRTRIDGKIIDV 584
+ +DG I V
Sbjct: 232 SNSTLDGNTIYV 243
>gi|307105081|gb|EFN53332.1| hypothetical protein CHLNCDRAFT_26116 [Chlorella variabilis]
Length = 198
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 15/188 (7%)
Query: 51 HLSTVGDVTYVEILND--DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ VG+V Y ++L + + +G IVEF++PD A+ +++ E GRK+ I+E
Sbjct: 22 YFGAVGNVRYADVLREAGPGSRSKGCGIVEFETPDEAAAAIVQLNDTELDGRKIFIREDR 81
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
ED GGGG ++ + S +P ++ V L
Sbjct: 82 EDPSTSLGGGGGG-YEQQRHVVAAGGGSGGRPGSSAAPG------------TQIVVHGLP 128
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
Y+ + L+++ + AG V +I + DG S+G+GTV F P +A +I +LN L R
Sbjct: 129 YRTSWQDLKDMCKPAGAVVRADIVTNPDGSSKGWGTVSFATPSDAQAAIQLLNGSELEGR 188
Query: 229 RITVRMDR 236
+T ++D+
Sbjct: 189 VVTAKLDK 196
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 24/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D GK +G V F PD AV MH E +GR L A + K
Sbjct: 212 FNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARA-QRK 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L L+ ++ ++Y L +N ++V NLD +
Sbjct: 271 EERQE---------ELKQRLEKQRAERQSSY--------MLNVN------LYVKNLDDNI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+K+L E F + G + + ++ D + +S+GFG V F +P +A ++++ +N
Sbjct: 308 DDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMN 357
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 46/71 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +++K+L + F G++ + +I +D++G+S+G+G V F+ A ++I +N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 222 NQNLFERRITV 232
N + +R + V
Sbjct: 163 NMIIRDRVVYV 173
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + +I+ D+ G+ +G V F+ + +A+ K++ + R + + + + K
Sbjct: 121 FSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI-PK 179
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ Q KF N Y + N +
Sbjct: 180 TERKS---------------QARKVKFNNLY---------------------IKNFPPET 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI- 230
D +KL+E+F G++++ + D +GKS+GFG V F P A ++ ++ + + R +
Sbjct: 204 DNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALY 263
Query: 231 TVRMDRVADR 240
R R +R
Sbjct: 264 CARAQRKEER 273
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 24/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D GK +G V F PD AV MH E +GR L A + K
Sbjct: 212 FNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARA-QRK 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L L+ ++ ++Y L +N ++V NLD +
Sbjct: 271 EERQE---------ELKQRLEKQRAERQSSY--------MLNVN------LYVKNLDDNI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+K+L E F + G + + ++ D + +S+GFG V F +P +A ++++ +N
Sbjct: 308 DDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMN 357
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 46/71 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +++K+L + F G++ + +I +D++G+S+G+G V F+ A ++I +N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 222 NQNLFERRITV 232
N + +R + V
Sbjct: 163 NMIIRDRVVYV 173
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + +I+ D+ G+ +G V F+ + +A+ K++ + R + + + + K
Sbjct: 121 FSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI-PK 179
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ Q KF N Y + N +
Sbjct: 180 TERKS---------------QARKVKFNNLY---------------------IKNFPPET 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI- 230
D +KL+E+F G++++ + D +GKS+GFG V F P A ++ ++ + + R +
Sbjct: 204 DNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALY 263
Query: 231 TVRMDRVADR 240
R R +R
Sbjct: 264 CARAQRKEER 273
>gi|298708562|emb|CBJ30647.1| RNA-binding protein, putative [Ectocarpus siliculosus]
Length = 462
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 37/252 (14%)
Query: 3 SPVTETELVEQIAH---QDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVT 59
+P E E ++++H Q + +I G L D+++ +H G +
Sbjct: 38 APAVEGEKAKELSHEEQQKADVEGKIFLGG-LTWQTTEDMLK--------THFGKWGALN 88
Query: 60 YVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMG 118
V ++ N TG+PRG V+FQ A+ + H + GR + +K AV
Sbjct: 89 DVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVID--GRTIDVKRAVP--------- 137
Query: 119 GGGGVDRDLSALLQNNSSK-FGNTYGLSPQFLESLGIN-CPLINKVFVANLDYKVDEKKL 176
RD + L + + + N G S G+N PL NK+FV LD +V++
Sbjct: 138 ------RDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADF 191
Query: 177 REVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
R F GKVE+ + DK G+SRGFG + +D P + V+ + L + + V
Sbjct: 192 RGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSP-DIVRKVMSGGTHELKGKSVEV--- 247
Query: 236 RVADRLDGPVRL 247
+ A DGP +
Sbjct: 248 KTAAPRDGPRQF 259
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 36/193 (18%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVEDKG 112
G +T ++ D GK +G V F++P+ KAV +MH +E G RKL + A + K
Sbjct: 222 FGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRA-QKKN 280
Query: 113 GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVANLD 168
R SA L+ + Q +E + G+N ++V NLD
Sbjct: 281 ER-------------SAELKRRYEQ---------QKVERMQRYQGVN------LYVKNLD 312
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
V++ L++ F GK+ + ++ D +G+S+GFG V F+ P EA ++++ +N + + +
Sbjct: 313 DTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTK 372
Query: 229 RITVRM-DRVADR 240
+ V + R DR
Sbjct: 373 PLYVALAQRKEDR 385
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 37/183 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ ND+ +G V F++ + +KA+ K++ +G+K+ + +
Sbjct: 126 FSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRM 185
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R MG + +F N V++ N ++
Sbjct: 186 ARLREMG--------------ETTRRFTN---------------------VYIKNFADEL 210
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERR 229
D++ L ++F GK+ + + +D DGKS+GFG V F++P +A ++++ ++ L ER+
Sbjct: 211 DKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERK 270
Query: 230 ITV 232
+ V
Sbjct: 271 LYV 273
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 49/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ G+
Sbjct: 31 EAMLFE--KFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDMMYGKP 88
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR+ G
Sbjct: 89 IRIMWSQRDPSMRRSGAGN----------------------------------------- 107
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F + G + + ++A D++ S+G+G V F+ A ++I +N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVN 167
Query: 222 NQNLFERRITV-----RMDRVAD 239
L +++ V RM R+ +
Sbjct: 168 GMLLEGKKVYVGKFQPRMARLRE 190
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G VT V + D GK RG V F++ + AV +M+ E G+KL + A + K
Sbjct: 259 FKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRA-QKK 317
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + +L L ++ + + L+ G+N +FV NLD +
Sbjct: 318 RERLD---------ELKRLYESTRLE---------KLLKYQGVN------LFVKNLDDSI 353
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL E F+ G + + + +D GKS+GFG V F P EA ++I+ +N + + + +
Sbjct: 354 DSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLY 413
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 414 VALAQRKD 421
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL +VD K E+F+ G V +V + D++GKSRGFG V F++ A+ ++ +N
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 222 NQNLFERRITV-RMDRVADRLDGPVRLPEGLK 252
++ + +++ V R + +RLD RL E +
Sbjct: 301 DKEIDGQKLYVGRAQKKRERLDELKRLYESTR 332
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++I S +G V+ + + D T K G A V F +A+ +++ GR
Sbjct: 71 EALLFEI--FSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRP 128
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D RRN G
Sbjct: 129 CRIMWSQRDPSLRRNGDGN----------------------------------------- 147
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F G++ + ++A D+ G+S+ FG V ++ A +I +N
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVN 207
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 208 GMLLNDREVFV 218
>gi|294924561|ref|XP_002778836.1| splice factor, putative [Perkinsus marinus ATCC 50983]
gi|239887640|gb|EER10631.1| splice factor, putative [Perkinsus marinus ATCC 50983]
Length = 247
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ + G+V V+IL G+ +G A+VE+++ + KA++ ++ E RK+ ++E D
Sbjct: 25 HMKSAGEVESVDILTRRDGRSKGCALVEYKTEEAAEKAIDTLNDTEVGTRKIFVRE---D 81
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF-------LESLGINCPLINK-V 162
+G M DRD +A + K G G + L + +++ +
Sbjct: 82 RGPIEEM------DRDAAAATRQGKGKGGKGKGKGKGKGFKGRDRIRPLKVGEKDVHRLI 135
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NL ++ + L+++FR G++ V++A DG+S+GF T+ F A ++I N
Sbjct: 136 YVGNLPWRTAWQDLKDLFRECGEMIRVDVAEGWDGRSKGFATILFQDAEGAQKAIEKFNG 195
Query: 223 QNLFERRITVRMD 235
R++ VR D
Sbjct: 196 YEFQGRKMFVRED 208
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V +LD++V E +L + + AG+VE+V+I +DG+S+G VE+ A ++I LN
Sbjct: 8 VYVGSLDFEVTETQLGDHMKSAGEVESVDILTRRDGRSKGCALVEYKTEEAAEKAIDTLN 67
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
+ + R+I VR DR GP+
Sbjct: 68 DTEVGTRKIFVREDR------GPI 85
>gi|294931650|ref|XP_002779959.1| splice factor, putative [Perkinsus marinus ATCC 50983]
gi|239889720|gb|EER11754.1| splice factor, putative [Perkinsus marinus ATCC 50983]
Length = 247
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ + G+V V+IL G+ +G A+VE+++ + KA++ ++ E RK+ ++E D
Sbjct: 25 HMKSAGEVESVDILTRRDGRSKGCALVEYKTEEAAEKAIDTLNDTEVGTRKIFVRE---D 81
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF-------LESLGINCPLINK-V 162
+G M DRD +A + K G G + L + +++ +
Sbjct: 82 RGPIEEM------DRDAAAATRQGKGKGGKGKGKGKGKGFKGRDRIRPLKVGEKDVHRLI 135
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NL ++ + L+++FR G++ V++A DG+S+GF T+ F A ++I N
Sbjct: 136 YVGNLPWRTAWQDLKDLFRECGEMIRVDVAEGWDGRSKGFATILFQDAEGAQKAIEKFNG 195
Query: 223 QNLFERRITVRMD 235
R++ VR D
Sbjct: 196 YEFQGRKMFVRED 208
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V +LD++V E +L + + AG+VE+V+I +DG+S+G VE+ A ++I LN
Sbjct: 8 VYVGSLDFEVTETQLGDHMKSAGEVESVDILTRRDGRSKGCALVEYKTEEAAEKAIDTLN 67
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
+ + R+I VR DR GP+
Sbjct: 68 DTEVGTRKIFVREDR------GPI 85
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 42/200 (21%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ S G++ +I ND+TGK +G V F++ + R+A++ ++ G+++ +
Sbjct: 146 TLYET--FSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYV 203
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
V K D + L + F N V+V
Sbjct: 204 APHVSKK--------------DRQSKLDEARANFTN---------------------VYV 228
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-- 222
NLD + E+ +F+ G + +V + D +GKSRGFG V+F++ +AV+++ LN+
Sbjct: 229 KNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTE 288
Query: 223 ---QNLFERRITVRMDRVAD 239
Q L+ R + +R+ +
Sbjct: 289 YKGQTLYVGRAQKKYERLQE 308
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 33/176 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T V + D GK RG V+F++ + KAV ++ E KG+ L + A +
Sbjct: 244 FKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKK- 302
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVANL 167
+R Q +SK LE L GIN +F+ NL
Sbjct: 303 -----------YERLQELKKQYQASK-----------LEKLAKYQGIN------LFIKNL 334
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +D++KL+E F G + + + ++GKS+GFG V F P EA ++I+ N Q
Sbjct: 335 DDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQ 390
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 44/180 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY I S +G V+ + + D K G A V F + + A+ K++ KGR
Sbjct: 56 EALLYDI--FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYTAIKGRP 113
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D R+ G
Sbjct: 114 CRIMWSQRDPSMRKKGSGN----------------------------------------- 132
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L E F + G + + +IA D+ GKS+GFG V F++ A ++I +N
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAIN 192
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 27/186 (14%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V ++ + ++AV++M+ E G+++ + A + KG R+
Sbjct: 520 GHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRA-QKKGERQ 578
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q SS++ G+N ++V NLD +D+++
Sbjct: 579 TE-----LKRHFEQVKQERSSRYQ-------------GVN------LYVKNLDDSIDDER 614
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM- 234
LR+ F G + + ++ ++ G SRGFG V F P EA +++S +N + + + + V +
Sbjct: 615 LRKAFSPFGTITSAKVMME-GGHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALA 673
Query: 235 DRVADR 240
R DR
Sbjct: 674 QRKRDR 679
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 38/190 (20%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ +LY+ S G++ ++++D+ G +G V F++ KA+ KM+ K+
Sbjct: 417 NKALYKT--FSAFGNILSCKVISDENGS-KGYGFVHFENQQAADKAIEKMNGVRLNNLKV 473
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ K +R+L LG V
Sbjct: 474 YVGRFKSRK------------ERELE-----------------------LGARAREFTNV 498
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
++ N +D +L EVF G +V++ D+ GKS+GFG V ++ +A +++ +N
Sbjct: 499 YIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNG 558
Query: 223 QNLFERRITV 232
+ +RI V
Sbjct: 559 KEFNGKRIYV 568
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++ D++G S+G+G V F++ A ++I
Sbjct: 403 VGNIFIKNLEKSIDNKALYKTFSAFGNILSCKVISDENG-SKGYGFVHFENQQAADKAIE 461
Query: 219 M-----LNNQNLFERRITVRMDR 236
LNN ++ R R +R
Sbjct: 462 KMNGVRLNNLKVYVGRFKSRKER 484
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V ++ DDTGK +G V F+ + +KAV+ M+ E GR++ + A + KG R+
Sbjct: 215 GPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRA-QKKGERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
N + R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 N-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGLDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAREFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+E+F G +V + D GKS+GFG V F+ +A +++ +N + L R++
Sbjct: 203 DDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
L I + D R+ S GN
Sbjct: 82 LRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 35/200 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V V I+ D GK RG V F+SPD +KAV ++ +KL + A + K
Sbjct: 227 FSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRA-QKK 285
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPL----INKVFVANL 167
R+ LL++ E +NC + + ++V NL
Sbjct: 286 AERQE-------------LLKH----------------EKEMVNCNIGKEKASNLYVKNL 316
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D VD+ KL+E F G++ + ++ G S+GFG V F EA ++++ LN L
Sbjct: 317 DASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 228 RRITVRM-DRVADRLDGPVR 246
R + + M R DR P++
Sbjct: 377 RSLYIAMAQRKEDRQRIPMK 396
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 41/198 (20%)
Query: 44 ASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
ASL I G++ ++ ++ GK + V+F S D A+N ++ G+KL
Sbjct: 131 ASLQDI--FCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLF 187
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+ + V+ K R+ + +KF N Y
Sbjct: 188 VSKFVK-KCERKE---------------ASEETKFTNVY--------------------- 210
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V NL + E +R+ F GKV V I D +GKSRGFG V F+ P EA +++ LN
Sbjct: 211 VKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGA 270
Query: 224 NLFERRITV-RMDRVADR 240
L +++ V R + A+R
Sbjct: 271 MLGSKKLFVGRAQKKAER 288
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI---KFAEIKGKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ VKNL P+I L+D F G+I K AE GK G V+FDS+ +A A++ ++
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALNALND 178
Query: 575 TRIDGKIIDVTFF 587
T +DGK + V+ F
Sbjct: 179 TMLDGKKLFVSKF 191
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI---- 217
+FV NLD ++ L+++F G + + ++A +++GKS+ FG V+FD A ++
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 218 -SMLNNQNLFERRITVRMDR 236
+ML+ + LF + + +R
Sbjct: 178 DTMLDGKKLFVSKFVKKCER 197
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 24/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D GK +G V F PD AV MH E +GR L A + K
Sbjct: 212 FNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARA-QRK 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L L+ ++ ++Y L +N ++V NLD +
Sbjct: 271 EERQE---------ELKQRLEKQRAERQSSY--------MLNVN------LYVKNLDDNI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+K+L E F + G + + ++ D + +S+GFG V F +P +A ++++ +N
Sbjct: 308 DDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMN 357
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 46/71 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +++K+L + F G++ + +I +D++G+S+G+G V F+ A ++I +N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 222 NQNLFERRITV 232
N + +R + V
Sbjct: 163 NMIIRDRVVYV 173
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + +I+ D+ G+ +G V F+ + +A+ K++ + R + + + + K
Sbjct: 121 FSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI-PK 179
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ Q KF N Y + N +
Sbjct: 180 TERKS---------------QARKVKFNNLY---------------------IKNFPPET 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI- 230
D +KL+E+F G++++ + D +GKS+GFG V F P A ++ ++ + + R +
Sbjct: 204 DNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALY 263
Query: 231 TVRMDRVADR 240
R R +R
Sbjct: 264 CARAQRKEER 273
>gi|47230652|emb|CAF99845.1| unnamed protein product [Tetraodon nigroviridis]
Length = 226
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 19/122 (15%)
Query: 482 GGGSGQASIQSGGYGNPR---AGLDSNRSMNQSSN-----IERDT-------VVVKNLPP 526
GGG G S+ G R +G+D NRS + ++R + + V+NL
Sbjct: 99 GGGMGNMSMDRMGSSFDRMGMSGMDMNRSFGGYGHMGGNMLDRSSGSKAGCQIFVRNLSY 158
Query: 527 TITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDRTRIDGKII 582
+TWQ+L++KF +CG + FAEIK GK G VRFDS +A++A +M+ ++I+G+ +
Sbjct: 159 DLTWQKLKEKFSHCGQVMFAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGSKINGREV 218
Query: 583 DV 584
DV
Sbjct: 219 DV 220
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 150 QIFVRNLSYDLTWQKLKEKFSHCGQVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRLM 208
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 209 NGSKINGREVDVRIDRNA 226
>gi|328772428|gb|EGF82466.1| hypothetical protein BATDEDRAFT_86274 [Batrachochytrium
dendrobatidis JAM81]
Length = 586
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 13/213 (6%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE----DK 111
GDV I D +G+ RG IV +P+ KA+ +R+ GR+L ++E K
Sbjct: 304 GDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQMFNRYILSGRQLEVREDRHVFKASK 363
Query: 112 GGRRNMGGGGGVDRDLSALL-----QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
G + D A L Q+++ + +G + E+ + I +FV N
Sbjct: 364 EGEHHEHSHRTTRLDSPAPLTQYGGQHDTGHIRHEHGYGNR-SENYAMKNSGIT-LFVGN 421
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y V ++L+++FR G EI G+SRGFG V +A ++I LN
Sbjct: 422 LVYSVIWQELKDLFRSVGIPTKAEIVTSSSGRSRGFGFVTMATQEDANKAIKELNGTEFR 481
Query: 227 ERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
R+I VR+D+ + PE L+ + +G
Sbjct: 482 GRKIEVRLDKFGSHESRGI--PEALQGTQVLVG 512
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + + L+++FR AG V I D G+SRGFG V P +A ++I M N
Sbjct: 282 LFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQMFN 341
Query: 222 NQNLFERRITVRMDR 236
L R++ VR DR
Sbjct: 342 RYILSGRQLEVREDR 356
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VF+ NL + + K L++VF V +V++ +G+SRGFG V D P A I+
Sbjct: 20 QVFIGNLPFTMQSKDLKDVFNKTAGVTSVKVMSHGNGRSRGFGLVYCDTPEIAQSIITQF 79
Query: 221 NNQNLFERRITVRMDRV 237
L R+I VR+DRV
Sbjct: 80 QGLELKGRQIEVRIDRV 96
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
T+ V NLP ITWQ+L+D FR GD+ + I G G+V + A +AI M
Sbjct: 281 TLFVGNLPFIITWQDLKDLFRQAGDVAVSHIPTDGSGRSRGFGIVTMTTPEDAAKAIQMF 340
Query: 573 DRTRIDGKIIDV 584
+R + G+ ++V
Sbjct: 341 NRYILSGRQLEV 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 40/189 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+VG T EI+ +G+ RG V + + KA+ +++ E +GRK+ ++
Sbjct: 435 FRSVGIPTKAEIVTSSSGRSRGFGFVTMATQEDANKAIKELNGTEFRGRKIEVR------ 488
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI-NKVFVANLDYK 170
KFG+ ES GI L +V V NL +
Sbjct: 489 -----------------------LDKFGSH--------ESRGIPEALQGTQVLVGNLPFH 517
Query: 171 VDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ + L+++FR + + + +D + G+S+G GTV F +A +++S LN + R
Sbjct: 518 MRWQDLKDIFRCVAEPQLANVRIDPETGRSQGVGTVRFQTEEDATRALS-LNETVIAGRS 576
Query: 230 ITVRMDRVA 238
I V++D+ A
Sbjct: 577 IWVQIDKQA 585
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 481 YGGGSGQASI-QSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRN 539
YGG I GYGN RS N + T+ V NL ++ WQEL+D FR+
Sbjct: 386 YGGQHDTGHIRHEHGYGN--------RSENYAMKNSGITLFVGNLVYSVIWQELKDLFRS 437
Query: 540 CGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
G AEI + +G G V ++ A +AI ++ T G+ I+V
Sbjct: 438 VGIPTKAEIVTSSSGRSRG-FGFVTMATQEDANKAIKELNGTEFRGRKIEV 487
>gi|343429912|emb|CBQ73484.1| related to HRB1-Poly(A+) RNA-binding protein, involved in the
export of mRNAs from the nucleus to the cytoplasm
[Sporisorium reilianum SRZ2]
Length = 521
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 10/194 (5%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + E+L G +G IVE+ SP+ +KA+ +M + +GR++ ++ ED+
Sbjct: 99 MREAGNVVFSEVLTLPNGSSKGCGIVEYSSPEEAQKAITQMTNKQLEGRQVFVR---EDR 155
Query: 112 GGRRNMGGGGGV-------DRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G G + G G ++FV
Sbjct: 156 EDEVRYGSTPGALPRGAGRGGFGGPGGRGGFGPPGRGGFFGGPPPPYGGFAGGAPTQLFV 215
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
+NL Y V + L+++FR AG V ++ + DG+S+G G V F + +A +I+M + +
Sbjct: 216 SNLPYDVSWQDLKDLFRSAGNVTRADVNMGPDGRSKGTGIVAFGNSNDASNAIAMYHGYD 275
Query: 225 LFERRITVRMDRVA 238
R + VR+D+ A
Sbjct: 276 FRGRMLEVRLDKFA 289
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
NC +V+V NL Y V L++ R AG V E+ +G S+G G VE+ P EA
Sbjct: 78 NC----RVYVGNLSYGVKWNTLKDFMREAGNVVFSEVLTLPNGSSKGCGIVEYSSPEEAQ 133
Query: 215 QSISMLNNQNLFERRITVRMDR 236
++I+ + N+ L R++ VR DR
Sbjct: 134 KAITQMTNKQLEGRQVFVREDR 155
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + + L E+F+ GKV+ EI + G+S+G G V+F +A +I+
Sbjct: 389 QIFVRNLPWSTSNEDLVELFQTTGKVDEAEIVFEH-GRSKGVGVVQFATVEDAETAIAKF 447
Query: 221 NNQNLFERRITVRMDR 236
N+ R + + +R
Sbjct: 448 NSYVYGGRPLEIEFNR 463
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP ++WQ+L+D FR+ G++ A++ + KG G+V F + A AI M
Sbjct: 213 LFVSNLPYDVSWQDLKDLFRSAGNVTRADVNMGPDGRSKG-TGIVAFGNSNDASNAIAMY 271
Query: 573 DRTRIDGKIIDV 584
G++++V
Sbjct: 272 HGYDFRGRMLEV 283
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++T + D+ GK RG V F+S + AV +H E GRKL + A + K
Sbjct: 248 FGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARA-QKK 306
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + +L +N + + Y G+N +++ NL+ +
Sbjct: 307 SERED---------ELRKSYENAKQEKLSKYQ---------GVN------LYIKNLEDDI 342
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KLR F G + + ++ D+ S+GFG V F P EA +++S +NN+ + + +
Sbjct: 343 DDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLY 402
Query: 232 VRM 234
V +
Sbjct: 403 VSL 405
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD ++ ++ E+F G + + ++ D++GKSRGFG V F+ +A ++ L+
Sbjct: 230 IYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLH 289
Query: 222 NQNLFERRITV-RMDRVADRLD 242
+ + R++ V R + ++R D
Sbjct: 290 DTEINGRKLYVARAQKKSERED 311
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD ++D K L + F G V + ++A D+ G S+G+G V ++ A +I +N
Sbjct: 137 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVN 196
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 197 GMLLNDKKVFV 207
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D TGK +G V ++ + KAV +M+ E G+ +
Sbjct: 200 DESLKEL--FSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 257
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 258 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 292
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + E+ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 293 YIKNLDDTIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 350
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 115 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 166
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 167 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 198
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 199 DDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 258
Query: 232 V 232
V
Sbjct: 259 V 259
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 94 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 152
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 153 KMNGMLLNDRKVFVGRFKSRKEREAE 178
>gi|242247303|ref|NP_001156159.1| mitotic spindle assembly checkpoint protein MAD2 [Acyrthosiphon
pisum]
gi|239790656|dbj|BAH71876.1| ACYPI004152 [Acyrthosiphon pisum]
Length = 204
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 38/45 (84%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDEN 309
L + +WLL++K+QK+S++ISN NTKEV+ERWDFKLQY+ S D N
Sbjct: 69 LNQMKDWLLEQKIQKMSMVISNVNTKEVMERWDFKLQYEGSGDSN 113
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-VEDKGG 113
G+V VE++ D TG+ RG V + + V A + + +E GR + + K
Sbjct: 111 GNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 170
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
+ GGG G + NSS FG G G + N+V+V NL + VD+
Sbjct: 171 NSSFGGGRGGNSSYGGGRDGNSS-FGGARG---------GRSVDSSNRVYVGNLSWGVDD 220
Query: 174 KKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L+E+F G V + ++ D+D G+SRGFG V + E +I LN +L R I V
Sbjct: 221 LALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRV 280
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 146 PQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGT 204
P+F E L K+FV NL + VD L +F AG VE VE+ DK G+SRGFG
Sbjct: 81 PRFSEDL--------KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGF 132
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
V E + N + R I V GP S G G G N
Sbjct: 133 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNA--------GPAPAKRENSSFGGGRGGN 181
>gi|395328131|gb|EJF60525.1| hypothetical protein DICSQDRAFT_181243 [Dichomitus squalens LYAD-421
SS1]
Length = 1772
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + + L+++FR AG V+ ++AL DG+SRGFGTV F + +A +++ M N
Sbjct: 1038 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFSNEADAERAVRMFN 1097
Query: 222 NQNLFERRITVRMDRVA 238
R + V D+ A
Sbjct: 1098 GYEYNGRPLKVHFDKFA 1114
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A +++ M
Sbjct: 863 TQLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGRAVDM 922
Query: 220 LNNQNLFERRITVRMDRVADRL 241
N R + VR DR+ + +
Sbjct: 923 FNGYTWQTRTLEVRPDRMGEEI 944
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP I WQ+L+D FR G ++ A++ D G V F +E A+RA+ M +
Sbjct: 1038 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFSNEADAERAVRMFN 1097
Query: 574 RTRIDGKIIDVTF 586
+G+ + V F
Sbjct: 1098 GYEYNGRPLKVHF 1110
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 510 QSSNIERDT---VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDS 561
++SN RDT + V NLP + WQ+L+D FR G + A++ D G V +
Sbjct: 853 RTSNPPRDTRTQLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLAT 912
Query: 562 EWTAKRAIDMMDRTRIDGKIIDV 584
A RA+DM + + ++V
Sbjct: 913 AEDAGRAVDMFNGYTWQTRTLEV 935
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ DD+GK +G V F+ + +KAV+ M+ E GR++ + A + K
Sbjct: 198 FSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRA-QKK 256
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 257 GERQN-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGL 292
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 293 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 341
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 106 FSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 157
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 158 -------GRFKSRKEREAELGARAREFTN---------------------VYIKNFGEDM 189
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+E+F G ++ + D GKS+GFG V F+ +A +++ +N + L R++
Sbjct: 190 DDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVY 249
Query: 232 V 232
V
Sbjct: 250 V 250
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 48/194 (24%)
Query: 52 LSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S G + + + D T + G A V FQ P +A++ M+ KGR L I + D
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ S GN +F+ NLD
Sbjct: 78 PSLRK--------------------SGVGN---------------------IFIKNLDKS 96
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-----MLNNQNL 225
+D K L + F G + + ++ D++G S+G+G V F+ A ++I +LN++ +
Sbjct: 97 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKV 155
Query: 226 FERRITVRMDRVAD 239
F R R +R A+
Sbjct: 156 FVGRFKSRKEREAE 169
>gi|358054360|dbj|GAA99286.1| hypothetical protein E5Q_05981 [Mixia osmundae IAM 14324]
Length = 913
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+FV NL + + L+++FR AG + ++ L DG+SRGFG+V F +P EA ++ M
Sbjct: 393 HLFVGNLPFNCQWQDLKDLFRAAGNILRADVQLGPDGRSRGFGSVLFAYPEEAQNAMHMF 452
Query: 221 NNQNLFERRITVRMDRVADRLDGPV 245
N R++ V DR + P
Sbjct: 453 NGYEFNGRQLKVHFDRFVHNANSPA 477
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL ++V + L+++FR G V ++AL D +S+GFG+V F + +A+ +I +
Sbjct: 201 QLFVGNLPFRVRWQDLKDLFRKCGTVLRADVALTVDNRSKGFGSVLFANEADALMAIDVF 260
Query: 221 NNQNLFERRITVRMD 235
N N R + VR+D
Sbjct: 261 NGFNWQMRVLDVRVD 275
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAI 569
R + V NLP + WQ+L+D FR CG + A++ + KG G V F +E A AI
Sbjct: 199 RTQLFVGNLPFRVRWQDLKDLFRKCGTVLRADVALTVDNRSKG-FGSVLFANEADALMAI 257
Query: 570 DMMDRTRIDGKIIDV 584
D+ + +++DV
Sbjct: 258 DVFNGFNWQMRVLDV 272
>gi|388582392|gb|EIM22697.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 326
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 89/209 (42%), Gaps = 28/209 (13%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S +Q + V +V E+L G +G IVEF SP+ + A+ GR + +
Sbjct: 28 SFFQDNAEGQVLEVASAEVLITPNGLSKGCGIVEFTSPESAQIAIESFSDKSLLGRPVFV 87
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN---- 160
+E DR+ A N T S QF P N
Sbjct: 88 RE-----------------DREQEARFGANP-----TPSRSQQFNRGPYNPGPPQNAAPG 125
Query: 161 -KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++FV NL ++V + L+++FR AG V +I L DGKS+G G V F +A +I +
Sbjct: 126 TQLFVGNLPFQVGWQDLKDLFRQAGHVVRADIQLFPDGKSKGNGIVSFSSREDANNAIEL 185
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
N + R I VR D+ A+ P R P
Sbjct: 186 YNGYEFYGRPIEVREDKFANS-PRPSRTP 213
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 160 NKVFVANLDYKVDEKKLREVFR--LAGKVENV---EIALDKDGKSRGFGTVEFDHPVEAV 214
N+V+V NL+Y+V + L+ F+ G+V V E+ + +G S+G G VEF P A
Sbjct: 10 NRVYVGNLNYEVKSEDLKSFFQDNAEGQVLEVASAEVLITPNGLSKGCGIVEFTSPESAQ 69
Query: 215 QSISMLNNQNLFERRITVRMDR 236
+I ++++L R + VR DR
Sbjct: 70 IAIESFSDKSLLGRPVFVREDR 91
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP + WQ+L+D FR G + A+I K KG+ G+V F S A AI++
Sbjct: 128 LFVGNLPFQVGWQDLKDLFRQAGHVVRADIQLFPDGKSKGN-GIVSFSSREDANNAIELY 186
Query: 573 DRTRIDGKIIDV 584
+ G+ I+V
Sbjct: 187 NGYEFYGRPIEV 198
>gi|358054464|dbj|GAA99390.1| hypothetical protein E5Q_06087 [Mixia osmundae IAM 14324]
Length = 392
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 47 YQISHLST------VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
YQ+ H VG V E+L G +G ++EF++ R+A+ +++ GR
Sbjct: 87 YQVRHADLKDFARDVGKVVNAEVLMTPNGMSKGCGLIEFETEGDARRAIKELNESSLLGR 146
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
+ ++E D+ + GGG R + L+ S F + G P
Sbjct: 147 PVFVRE---DRVDDPHPGGGA---RSVRGLVFPRSGAFAPSGGAPPS------------K 188
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V+ L V + L+++FR G V ++ LD+DG+ RG G V F +A +I
Sbjct: 189 QLIVSGLSDAVGWQDLKDLFRECGDVIRADVHLDEDGRPRGSGMVLFSSAGDARAAIEQF 248
Query: 221 NNQNLFERRITVRMDRVADRLDGP 244
+ + ++TV+ DRV R GP
Sbjct: 249 DGMEINGMKLTVKEDRV--RGSGP 270
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V+V NL Y+V L++ R GKV N E+ + +G S+G G +EF+ +A ++I
Sbjct: 78 HRVYVGNLSYQVRHADLKDFARDVGKVVNAEVLMTPNGMSKGCGLIEFETEGDARRAIKE 137
Query: 220 LNNQNLFERRITVRMDRVAD 239
LN +L R + VR DRV D
Sbjct: 138 LNESSLLGRPVFVREDRVDD 157
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
GDV ++ D+ G+PRGS +V F S R A+ + E G KL +KE G
Sbjct: 211 CGDVIRADVHLDEDGRPRGSGMVLFSSAGDARAAIEQFDGMEINGMKLTVKEDRVRGSGP 270
Query: 115 RNMGG----GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G GG + +F N SPQ +FV NL +
Sbjct: 271 PTRGAYPVRGGRGGGGSFGSGEPRPDRFANI-DPSPQ--------------IFVKNLPWS 315
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+ L E+F+ G V + E A ++G+++G G VEF +A +I+
Sbjct: 316 TANEDLVELFQTVGTVLHAE-ATQENGRAKGTGVVEFATADDAQTAITKF 364
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
++V L + WQ+L+D FR CGD+ A++ D G+V F S A+ AI+ D
Sbjct: 190 LIVSGLSDAVGWQDLKDLFRECGDVIRADVHLDEDGRPRGSGMVLFSSAGDARAAIEQFD 249
Query: 574 RTRIDGKIIDV 584
I+G + V
Sbjct: 250 GMEINGMKLTV 260
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V F+ D KAV +++ E G+K+ + A + +
Sbjct: 250 FAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKR 309
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + A+ +K+ G+N +FV NLD +
Sbjct: 310 ERMEEL------KKQYEAIRLEKLAKY-------------QGVN------LFVKNLDDSI 344
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-----MLNNQNLF 226
D +KL E F+ G + + ++ +D GKS+GFG V F P EA ++I+ M+NN+ L+
Sbjct: 345 DSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLY 404
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 66/278 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A+L++I S +G V+ + + D K G A V + + KA+ +++ +GR
Sbjct: 62 EATLFEI--FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEELNYTPIEGRP 119
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG---------NTYGLSPQ 147
I + D RR+ G G ++L + N + S FG + G S
Sbjct: 120 CRIMWSQRDPSARRS-GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQSKC 178
Query: 148 F------------LESLGINCPLIN---------------------------KVFVANLD 168
F +N L+N ++V N+D
Sbjct: 179 FGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNID 238
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
E++ ++F GK+ ++ + D+DGKS+GFG V F+ AV+++ LN++ + +
Sbjct: 239 LAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQ 298
Query: 229 RITV--------RMDRVADRLDGPVRLPEGLKSIGMGL 258
+I V RM+ + + + +RL + K G+ L
Sbjct: 299 KIYVGRAQKKRERMEELKKQYEA-IRLEKLAKYQGVNL 335
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T + +D+ GK RG V +++ + KAV+ +H + KG L + A +
Sbjct: 289 GPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKR----- 343
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+RD + K+ T L+ G+N ++V NLD + D++K
Sbjct: 344 -------TERDAELKKAHEQQKYETT-------LKYQGVN------LYVKNLDDEYDDEK 383
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+ F G + + ++ D+ G S+GFG V F P EA ++++ +N + L + + V +
Sbjct: 384 LQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSL 442
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A D+ G S+G+G V + A +I +N
Sbjct: 174 IFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVN 233
Query: 222 NQNLFERRITV-----RMDRVA 238
L ++ + V R DR A
Sbjct: 234 GMQLNDKVVFVGIHVPRRDRQA 255
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ GD+ ++ D+ G +G V + + + A+ ++ + + + + V
Sbjct: 192 FAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPR- 250
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RD A + S+F N Y + NL +
Sbjct: 251 -------------RDRQAKIDEVRSQFTNLY---------------------IKNLPTET 276
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
++L EVF G + + + D+ GK RGFG V +++ A +++ L++++ L+
Sbjct: 277 TTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLY 336
Query: 227 ERRITVRMDRVAD 239
R R +R A+
Sbjct: 337 VARAQKRTERDAE 349
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D++GK +G V F+ + +KAV++M+ E GR++ + A + K
Sbjct: 211 FSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRA-QKK 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 GERQN-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGL 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAREFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+E+F G ++ + D+ GKS+GFG V F+ +A +++ +N + L R++
Sbjct: 203 DDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
L I + D R+ S GN
Sbjct: 82 LRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V ++ + KAV +++ E G+K+ + A +
Sbjct: 253 FTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA---Q 309
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R M +L +N + + Y G+N +F+ NLD +
Sbjct: 310 KKRERM-------EELKKQYENTRLEKLSKYQ---------GVN------LFIKNLDDTI 347
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL E F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + F + +
Sbjct: 348 DSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLY 407
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 408 VALAQRKD 415
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N+D + E+ L+++F G + ++ + D +GKS+GFG V ++ AV+++ LN
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELN 294
Query: 222 NQNLFERRITV-RMDRVADRLD 242
++ + ++I V R + +R++
Sbjct: 295 DKEINGQKIYVGRAQKKRERME 316
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 39/208 (18%)
Query: 46 LYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
LY+ H S G + ++++DD G RG A V FQS +A+ +M+ K +L +
Sbjct: 114 LYE--HFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFV- 169
Query: 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
G +N ++ A LQN +++F N Y +
Sbjct: 170 ------GPFKN-------RKEREAELQNKANEFTNVY---------------------IK 195
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
N +D+++L+EVF GK+ +V++ D GKS+GFG V FD A +++ +N +++
Sbjct: 196 NFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDI 255
Query: 226 FERRITV-RMDRVADRLDGPVRLPEGLK 252
+ + V R + A+R ++ E LK
Sbjct: 256 CGQMVFVGRAQKKAERQAELKQMFEQLK 283
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 28/182 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D +GK +G V F + + ++AV M+ + G+ + + A + K
Sbjct: 210 FSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRA-QKK 268
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +FG G+ K+++ NLD
Sbjct: 269 AERQA---------ELKQMFEQLKRERFGRCRGV----------------KLYIKNLDET 303
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+DE++LR F G + V++ ++++G+S+GFG + F P EA ++++ +N Q L + I
Sbjct: 304 IDEEQLRRAFSSFGSMSRVKV-MEEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAI 362
Query: 231 TV 232
+
Sbjct: 363 NI 364
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F A ++I
Sbjct: 97 IGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIE 155
Query: 218 ----SMLNNQNLF 226
++L N LF
Sbjct: 156 EMNGALLKNCRLF 168
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V F+ + KAV +++ E G+K+ + A + +
Sbjct: 268 FAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKR 327
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + A+ SK+ G+N +FV NLD ++
Sbjct: 328 ERTEEL------KKQYEAVRLEKLSKY-------------QGVN------LFVKNLDEQI 362
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +KL E F+ G + + ++ +D GKS+GFG V F P EA ++I+ +N +
Sbjct: 363 DSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQR 414
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 35/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V++ DD G+ + V +++ + + A+ ++ R++ + + V K
Sbjct: 175 FSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKK 234
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ SK LE + N ++V N+D
Sbjct: 235 ------------DRE---------SK-----------LEEMKAN---YTNIYVKNIDLAY 259
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
EK+ E+F GK+ ++ + D +GKS+GFG V F+ A +++ LN++ + ++I
Sbjct: 260 TEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIY 319
Query: 232 V 232
V
Sbjct: 320 V 320
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T + +D+ GK RG V +++ + KAV+ +H + KG L + A +
Sbjct: 378 GPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKR----- 432
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+RD + K+ T L+ G+N ++V NLD + D++K
Sbjct: 433 -------TERDAELKKAHEQQKYETT-------LKYQGVN------LYVKNLDDEYDDEK 472
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+ F G + + ++ D+ G S+GFG V F P EA ++++ +N + L + + V +
Sbjct: 473 LQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSL 531
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A D+ G S+G+G V + A +I +N
Sbjct: 263 IFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVN 322
Query: 222 NQNLFERRITV-----RMDRVA 238
L ++ + V R DR A
Sbjct: 323 GMQLNDKVVFVGIHVPRRDRQA 344
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ GD+ ++ D+ G +G V + + + A+ ++ + + + + V
Sbjct: 281 FAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPR- 339
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RD A + S+F N Y + NL +
Sbjct: 340 -------------RDRQAKIDEVRSQFTNLY---------------------IKNLPTET 365
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
++L EVF G + + + D+ GK RGFG V +++ A +++ L++++ L+
Sbjct: 366 TTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLY 425
Query: 227 ERRITVRMDRVAD 239
R R +R A+
Sbjct: 426 VARAQKRTERDAE 438
>gi|154344761|ref|XP_001568322.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065659|emb|CAM43430.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 275
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 43/226 (19%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G V Y +++ D TG+P+GSA+V + + A+ + + +GR+L++++ D
Sbjct: 48 YFRNAGKVRYTDLIADRTGRPKGSALVTMMTVEGADNAIRMFNETDFEGRRLIVRKF--D 105
Query: 111 KGGR-----RNM----------------GGG---GGVDRDLSALLQNNSSKFGNTYGLSP 146
G R R+M GG G +A N S G+ YG
Sbjct: 106 DGPRPPLVQRDMMPAYGNAAPQSRSQYTAGGYYQGTSASGAAAAGYNRHSMTGSAYGRGA 165
Query: 147 QF----LESLGIN------------CPLI-NKVFVANLDYKVDEKKLREVFRLAGKVENV 189
+ E+ +N P + K+FV+NL + LRE F+ G VE
Sbjct: 166 PYHVGGAEAAEMNGAEPLPKPRSQQVPEVGRKLFVSNLPFDCTNSALRETFQQVGLVERA 225
Query: 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
EI L ++GKSRG G V EA +I+ + + R + VR+D
Sbjct: 226 EIILGRNGKSRGMGIVVMKSEDEAQIAIAEFDGIEMANRAMNVRLD 271
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL ++ + +++ FR AGKV ++ D+ G+ +G V A +I M N
Sbjct: 31 LFVGNLPFQTPWQHVKDYFRNAGKVRYTDLIADRTGRPKGSALVTMMTVEGADNAIRMFN 90
Query: 222 NQNLFERRITVR 233
+ RR+ VR
Sbjct: 91 ETDFEGRRLIVR 102
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 35/194 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V V I+ D GK RG V F+SPD +KAV ++ +KL + A + K
Sbjct: 227 FSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRA-QKK 285
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPL----INKVFVANL 167
R+ LL++ E +NC + + ++V NL
Sbjct: 286 AERQE-------------LLKH----------------EKEMVNCNIGKEKASNLYVKNL 316
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D VD+ KL+E F G++ + ++ G S+GFG V F EA ++++ LN L
Sbjct: 317 DASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 228 RRITVRM-DRVADR 240
R + + M R DR
Sbjct: 377 RSLYIAMAQRKEDR 390
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 41/198 (20%)
Query: 44 ASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
ASL I G++ ++ ++ GK + V+F S D A+N ++ G+KL
Sbjct: 131 ASLQDI--FCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLF 187
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+ + V+ K R+ + +KF N Y
Sbjct: 188 VSKFVK-KCERKEA---------------SEETKFTNVY--------------------- 210
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V NL + E +R+ F GKV V I D +GKSRGFG V F+ P EA +++ LN
Sbjct: 211 VKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGA 270
Query: 224 NLFERRITV-RMDRVADR 240
L +++ V R + A+R
Sbjct: 271 MLGSKKLFVGRAQKKAER 288
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI---KFAEIKGKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ VKNL P+I L+D F G+I K AE GK G V+FDS+ +A A++ ++
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALNALND 178
Query: 575 TRIDGKIIDVTFF 587
T +DGK + V+ F
Sbjct: 179 TMLDGKKLFVSKF 191
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI---- 217
+FV NLD ++ L+++F G + + ++A +++GKS+ FG V+FD A ++
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 218 -SMLNNQNLFERRITVRMDR 236
+ML+ + LF + + +R
Sbjct: 178 DTMLDGKKLFVSKFVKKCER 197
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
++V +LD +V E +L +VF G + +V + D GKS + V F HP +A ++++ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLPEGLKSI---GMGLGANGAPLQDV 268
N+ L + + R+ P+ GL ++ + N A LQD+
Sbjct: 91 NHTKLMGKPM-----RIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDI 136
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 24/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ GK +G V + PD AV MH E +GR L A + K
Sbjct: 212 FSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARA-QRK 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L ++ ++ + Y L +N ++V NLD +
Sbjct: 271 EERQE---------ELKQKIEKQRAERQSNY--------MLNVN------LYVKNLDDNI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+K+L E F + G + + ++ D + +S+GFG V F +P +A ++++ +N
Sbjct: 308 DDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMN 357
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 46/71 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +++K+L + F G++ + +I +D++G+S+G+G V F+ A ++I +N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 222 NQNLFERRITV 232
N + +R + V
Sbjct: 163 NMIIRDRVVYV 173
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + +I+ D+ G+ +G V F+ + +A+ K++ + R + + + + K
Sbjct: 121 FSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI-PK 179
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ Q KF N Y V N +
Sbjct: 180 TERKS---------------QARKVKFNNLY---------------------VKNFPPET 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI- 230
D +KL+E+F G++++ + D +GKS+GFG V + P A ++ ++ + + R +
Sbjct: 204 DNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLY 263
Query: 231 TVRMDRVADR 240
R R +R
Sbjct: 264 CARAQRKEER 273
>gi|444723542|gb|ELW64195.1| Myelin expression factor 2 [Tupaia chinensis]
Length = 506
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 431 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 490
Query: 575 TRIDGKIIDVTF 586
+I G+ IDV
Sbjct: 491 IKISGREIDVRL 502
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 429 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 487
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 488 MNGIKISGREIDVRLDRNA 506
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D TGK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 223 Q 223
+
Sbjct: 356 R 356
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ DD GK +G V F+ + +KAV+ M+ E GR++ + A + K
Sbjct: 211 FSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRA-QKK 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 GERQN-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGL 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAREFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+E+F G ++ + D GKS+GFG V F+ +A +++ +N + L R++
Sbjct: 203 DDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
L I + D R+ S GN
Sbjct: 82 LRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D++GK +G V F+ + RKAV++M+ + G+++ + A +
Sbjct: 211 FSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK- 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
V+R L++ + Q + + + C +N ++V NLD +
Sbjct: 270 -----------VERQTE--LKHKFGQMKQDKHKVEQVPQDISVRCQGVN-LYVKNLDDGI 315
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 316 DDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G RD A L + +F N V++ NL +
Sbjct: 171 -------GRFKSRRDRQAELGARAKEFTN---------------------VYIKNLGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+ +F G +V++ D+ GKS+GFG V F+ +A +++ +N ++L ++I
Sbjct: 203 DDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD +D K L + F G + + ++ D++G S+G+G V F+ EA ++I
Sbjct: 98 VGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
LN++ +F R R DR A+
Sbjct: 157 KMNGMFLNDRKVFVGRFKSRRDRQAE 182
>gi|343959520|dbj|BAK63617.1| myelin expression factor 2 [Pan troglodytes]
Length = 265
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 188 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 247
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 248 NGIKISGREIDV 259
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 188 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 246
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 247 MNGIKISGREIDVRLDRNA 265
>gi|401429468|ref|XP_003879216.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495466|emb|CBZ30771.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 274
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 52/230 (22%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G V Y +++ D TG+P+GSA+V + + A+ + + +GR+L+++ D
Sbjct: 48 YFRNAGKVRYTDLIADRTGRPKGSALVTMMTVEGAENAIRMFNETDFEGRRLIVRRF--D 105
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSK----------------------------FGNTY 142
G R + V RD+ N + + G+ Y
Sbjct: 106 DGPRPPL-----VQRDMMPAYGNTAPQSRGQYTAGGYYQGAAASGAAAGYNRHNMVGSAY 160
Query: 143 GLSPQF----LESLGIN------------CPLI-NKVFVANLDYKVDEKKLREVFRLAGK 185
G + ES +N P + K+FV+NL + LRE F+ G
Sbjct: 161 GRGTPYQVGGAESTEMNGTEPLPKPRSQQVPEVGRKLFVSNLPFDCTNSALRETFQQVGL 220
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
VE EI L ++GKSRG G V EA +I+ + + R + VR+D
Sbjct: 221 VERAEIILGRNGKSRGMGIVVMKSEDEAQIAIAEFDGIEMANRAMNVRLD 270
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL ++ + +++ FR AGKV ++ D+ G+ +G V A +I M N
Sbjct: 31 LFVGNLPFQTPWQHVKDYFRNAGKVRYTDLIADRTGRPKGSALVTMMTVEGAENAIRMFN 90
Query: 222 NQNLFERRITVR 233
+ RR+ VR
Sbjct: 91 ETDFEGRRLIVR 102
>gi|255078512|ref|XP_002502836.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
gi|226518102|gb|ACO64094.1| cold-shock protein with RNA binding domain [Micromonas sp. RCC299]
Length = 305
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V V NL ++ + L+E F G + EIA D+DG+SRG+GTV F EA ++I+ L
Sbjct: 227 RVVVLNLPWQTTWQALKEFFAGVGAITRAEIASDEDGRSRGYGTVRFSSEEEAARAIATL 286
Query: 221 NNQNLFERRITVRMDR 236
N R ITVRMD+
Sbjct: 287 NGAEFEGRIITVRMDK 302
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 493 GGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG 552
GG+GNP I VVV NLP TWQ L++ F G I AEI
Sbjct: 210 GGFGNPPGA--------NGGPIGGKRVVVLNLPWQTTWQALKEFFAGVGAITRAEIASDE 261
Query: 553 D-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
D G VRF SE A RAI ++ +G+II V
Sbjct: 262 DGRSRGYGTVRFSSEEEAARAIATLNGAEFEGRIITV 298
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G VT V + D GK RG V F++ + AV +M+ E G+KL + A + K
Sbjct: 259 FKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRA-QKK 317
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + +L L ++ + + Y G+N +FV NLD +
Sbjct: 318 RERLD---------ELKRLYESTRLEKLSKYQ---------GVN------LFVKNLDDSI 353
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL E F+ G + + + +D GKS+GFG V F P EA ++I+ +N + + + +
Sbjct: 354 DSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLY 413
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 414 VALAQRKD 421
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL +VD K E+F+ G V +V + D++GKSRGFG V F++ A+ ++ +N
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 222 NQNLFERRITV-RMDRVADRLDGPVRLPEGLK 252
++ + +++ V R + +RLD RL E +
Sbjct: 301 DKEIDGQKLYVGRAQKKRERLDELKRLYESTR 332
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++I S +G V+ + + D T K G A V F +A+ +++ GR
Sbjct: 71 EALLFEI--FSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRP 128
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D RRN G
Sbjct: 129 CRIMWSQRDPSLRRNGDGN----------------------------------------- 147
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F G++ + ++A D+ G+S+ FG V ++ A +I +N
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVN 207
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 208 GMLLNDREVFV 218
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 56 GDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G V EI+ N +T + RG V + D KA+ K HR++ GR L + +A +G R
Sbjct: 122 GTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVNKAAP-RGSR 180
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
S F Y +++V NL ++VD+
Sbjct: 181 -----------------PERPSVFKIAY------------------RIYVGNLPWQVDDA 205
Query: 175 KLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
+L +VF G+V N + D++ G+SRGFG V E +I+ L+ Q+L R ITV
Sbjct: 206 RLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITVN 265
Query: 234 M 234
+
Sbjct: 266 I 266
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K++V NL Y V+ + L ++F AG VE EI +++ +SRGFG V EA ++I
Sbjct: 99 KLYVGNLPYDVNSENLAQLFDQAGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEK 158
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQ 266
+ +L R +TV ++ A R P R P K I + P Q
Sbjct: 159 FHRYDLNGRFLTV--NKAAPRGSRPER-PSVFK-IAYRIYVGNLPWQ 201
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T + + D GK +G V F+S + KAV +++ + G+KL + A + +
Sbjct: 251 FEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKR 310
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ R A SK+ G+N +FV NLD +
Sbjct: 311 ERIEEL------KRQYEAARLEKLSKYQ-------------GVN------LFVKNLDDSI 345
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D KL E F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + + +
Sbjct: 346 DSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLY 405
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 406 VALAQRKD 413
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 88/192 (45%), Gaps = 36/192 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D+ G + V +++ + + A+ ++ R++ + + V K
Sbjct: 158 FSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKK 217
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ SKF E + N V+V N+D
Sbjct: 218 ------------DRE---------SKF-----------EEMKAN---FTNVYVKNIDLGF 242
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E+++R++F GK+ ++ + D +GKS+GFG V F+ AV+++ LN++++ +++
Sbjct: 243 SEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLY 302
Query: 232 V-RMDRVADRLD 242
V R + +R++
Sbjct: 303 VGRAQKKRERIE 314
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++I S VG V+ + + D T K G A V F + KA+ +++ GR
Sbjct: 63 EALLFEI--FSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRP 120
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D RRN G
Sbjct: 121 CRIMWSQRDPSLRRNGEGN----------------------------------------- 139
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F GK+ + ++A D+ G S+ FG V ++ A +I +N
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVN 199
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 200 GMLLNDREVYV 210
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+TG +G V F++ +++ K++ G+K+ + V
Sbjct: 110 FSAFGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFV--- 166
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G DR+ + LG L V++ N+D V
Sbjct: 167 ---------GRNDRE-----------------------KELGQRAKLYTNVYIKNIDENV 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+EK+L E+F+ G + + ++ DG SRGFG V F+ P EA ++++ L+
Sbjct: 195 NEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELH 244
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 25/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D G RG V F+ P KAV ++H ++ K + K
Sbjct: 203 FKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKK 262
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ ++L + + N Y G+N ++V NLD +
Sbjct: 263 TERQ---------QELKRKFEQYKIERINRY---------QGVN------LYVKNLDDTI 298
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR F G +++ ++ +D DG+S+GFG V F P EA ++++ +N
Sbjct: 299 DDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMN 347
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A QSI
Sbjct: 89 VGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIE 148
Query: 219 -----MLNNQNLFERRITVRMDR 236
+LN + +F R R DR
Sbjct: 149 KVNGMLLNGKKVFVGRFVGRNDR 171
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ T V ++ D++G RG V F++ + +KAV++M+ E GR +
Sbjct: 204 DEKLKEI--FSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIM 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A K R M + R + Q+ ++++ G+N +
Sbjct: 262 FVGRA--QKKMERQM----ELKRRFEQMKQDRTTRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G RG V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-RGYGFVHFETHDAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAREFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D++KL+E+F G +V + D+ G RGFG V F++ +A +++ +N + L F
Sbjct: 203 DDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMF 262
Query: 227 ERRITVRMDR 236
R +M+R
Sbjct: 263 VGRAQKKMER 272
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PIASLYVGDLHQDVTEAMLYE--KFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KG+ + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGQPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G SRG+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 25/164 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D+TGKP+G V F+ P+ KAVN ++ E G+ L + A + K
Sbjct: 194 FEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRA-QKK 252
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R L + +++ G+N ++V NLD +
Sbjct: 253 SER-----AAELKRRFEQLKMDRINRYQ-------------GVN------LYVKNLDDSI 288
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
D+++LR+ F G + + ++ D +G+S+GFG V F P EA +
Sbjct: 289 DDERLRKEFTPFGTITSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 35/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ +G V F++ + A+ K++ GRK+ + + V
Sbjct: 101 FSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRS 160
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ +G + +F N Y + N +
Sbjct: 161 EREKQLG--------------QKARRFMNVY---------------------IKNFGDDL 185
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLRE+F GK+ + ++ D+ GK +GFG V F+ P A ++++ LNN+ L
Sbjct: 186 DDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKEL 239
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D++ S+G+G V F+ A +I
Sbjct: 80 VGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQ 139
Query: 219 MLNNQNLFERRITV 232
+N L R++ V
Sbjct: 140 KVNGMLLNGRKVFV 153
>gi|348536946|ref|XP_003455956.1| PREDICTED: protein boule-like [Oreochromis niloticus]
Length = 334
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 19/120 (15%)
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
KEA K G + + D + L ++S+ FGN + N++FV
Sbjct: 3 KEAASQKSGGSSSPSDVLLPDDYADSLTDHSTTFGNV----------------IPNRIFV 46
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
LDY+V+E+ LR +F G V+ V+I LD G SRG+G V F+ +A++ +LNN N
Sbjct: 47 GALDYRVNERDLRHIFSQHGTVKEVKIVLDHSGVSRGYGFVTFETQEDALK---ILNNTN 103
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 22/173 (12%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D++GK +G V F+ + RKAV++M+ + G+++ + A +
Sbjct: 211 FSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK- 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP---QFLESLGINCPLINKVFVANLD 168
V+R KFG P Q + + C +N ++V NLD
Sbjct: 270 -----------VERQTEL-----KHKFGQMKQDKPKIEQVPQDRSVRCQGVN-LYVKNLD 312
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G RD A L + +F N V++ NL +
Sbjct: 171 -------GRFKSRRDRQAELGARAKEFTN---------------------VYIKNLGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N ++L ++I
Sbjct: 203 DDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD +D K L + F G + + ++ D++G S+G+G V F+ EA ++I
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
LN++ +F R R DR A+
Sbjct: 157 KMNGMFLNDRKVFVGRFKSRRDRQAE 182
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D +GK RG V F+ + KAV +++ E G+ + + A ++
Sbjct: 215 GKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRA------QK 268
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
M + R L Q S++ G+N +++ NLD +D++K
Sbjct: 269 KMERQAELKRKFELLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N ++
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDEM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLF 226
++++L+E+F GK +V++ D GKSRGFG V F+ +A +++ + LN + +F
Sbjct: 203 EDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVF 262
Query: 227 ERRITVRMDRVAD 239
R +M+R A+
Sbjct: 263 VGRAQKKMERQAE 275
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF------DHPVE 212
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F D +E
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 156
Query: 213 AVQSISMLNNQNLFERRITVRMDRVAD 239
+ + +LN++ +F R R +R A+
Sbjct: 157 KMNGM-LLNDRKVFVGRFKSRKEREAE 182
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 33 VPVVMDLIQGD-------ASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDL 84
VPV L GD LY+I ++V V+ V I D T + G A V + S
Sbjct: 8 VPVSASLYVGDLDADVTETMLYEI--FNSVAVVSSVRICRDALTRRSLGYAYVNYNSVAD 65
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ ++ +GR I + D RRN G
Sbjct: 66 AERALDTLNFTCIRGRPCRIMWCLRDPASRRNNDG------------------------- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VFV NLD +D K L + F L G + + +IA D +GKS G+G
Sbjct: 101 ----------------NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGF 144
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRL 241
+ F+H A ++IS LN L +R I V + + A+R
Sbjct: 145 IHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERF 182
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G V+ V I D++G RG V F SPD KA+ +MH +G+ L +
Sbjct: 381 SMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYV 435
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 33 VPVVMDLIQGD-------ASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDL 84
VPV L GD LY+I ++V V+ V I D T + G A V + S
Sbjct: 8 VPVSASLYVGDLDADVTETMLYEI--FNSVAVVSSVRICRDALTRRSLGYAYVNYNSVAD 65
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ ++ +GR I + D RRN G
Sbjct: 66 AERALDTLNFTCIRGRPCRIMWCLRDPASRRNNDG------------------------- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VFV NLD +D K L + F L G + + +IA D +GKS G+G
Sbjct: 101 ----------------NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGF 144
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRL 241
+ F+H A ++IS LN L +R I V + + A+R
Sbjct: 145 IHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERF 182
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
S G V+ V I D++G RG V F SPD KA+ +MH +G+ L +
Sbjct: 381 SMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYV 435
>gi|339899270|ref|XP_003392812.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|389594783|ref|XP_003722614.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|398023283|ref|XP_003864803.1| RNA-binding protein, putative [Leishmania donovani]
gi|321398747|emb|CBZ09015.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|322503039|emb|CBZ38123.1| RNA-binding protein, putative [Leishmania donovani]
gi|323363842|emb|CBZ12848.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 274
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 52/230 (22%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G V Y +++ D TG+P+GSA+V + + A+ + + +GR+L+++ D
Sbjct: 48 YFRNAGKVRYTDLIADRTGRPKGSALVTMMTVEGAENAIRMFNETDFEGRRLIVRRF--D 105
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSK----------------------------FGNTY 142
G R + V RD+ N + + G+ Y
Sbjct: 106 DGPRPPL-----VQRDMMPAYGNTAPQSRGQYTAGGYYQGAAASGAAAGYNRHNMAGSAY 160
Query: 143 GLSPQF----LESLGIN------------CPLI-NKVFVANLDYKVDEKKLREVFRLAGK 185
G + ES +N P + K+FV+NL + LRE F+ G
Sbjct: 161 GRGAPYQVGAAESTEMNGTEPLPKPRSQQVPEVGRKLFVSNLPFDCTNSALRETFQQVGL 220
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
VE EI L ++GKSRG G V EA +I+ + + R + VR+D
Sbjct: 221 VERAEIILGRNGKSRGMGIVVMKSEDEAQIAIAEFDGIEMANRAMNVRLD 270
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL ++ + +++ FR AGKV ++ D+ G+ +G V A +I M N
Sbjct: 31 LFVGNLPFQTPWQHVKDYFRNAGKVRYTDLIADRTGRPKGSALVTMMTVEGAENAIRMFN 90
Query: 222 NQNLFERRITVR 233
+ RR+ VR
Sbjct: 91 ETDFEGRRLIVR 102
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D TGK RG V ++ + KAV +M+ E G+ + + A ++
Sbjct: 216 GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA------QK 269
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
M + R L Q S++ G+N +++ NLD +D++K
Sbjct: 270 KMERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 310
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 311 LRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 355
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ + K
Sbjct: 120 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
MG + +F N V++ N +
Sbjct: 179 EREAEMGA--------------KAKEFTN---------------------VYIKNFGDDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLF 226
D+++L+E+F GK +V++ D GKSRGFG V ++ +A +++ + LN + +F
Sbjct: 204 DDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVF 263
Query: 227 ERRITVRMDRVAD 239
R +M+R A+
Sbjct: 264 VGRAQKKMERQAE 276
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 25 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKP 82
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 83 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 101
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 160
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 161 GMLLNDRKVFVGRFKSRKEREAE 183
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-VEDKGG 113
G+V VE++ D +G+ RG V + + V A + + +E GR + + K
Sbjct: 112 GNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 171
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
+ GGG G + NSS FG G G + N+V+V NL + VD+
Sbjct: 172 NSSFGGGRGGNSSYGGGRDGNSS-FGGARG---------GRSVDSSNRVYVGNLSWGVDD 221
Query: 174 KKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L+E+F G V + ++ D+D G+SRGFG V + E +I LN +L R I V
Sbjct: 222 LALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV 281
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 146 PQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGT 204
P+F E L K+FV NL + VD L +F AG VE VE+ DK G+SRGFG
Sbjct: 82 PRFSEDL--------KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGF 133
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
V E + N + R I V GP S G G G N
Sbjct: 134 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNA--------GPAPAKRENSSFGGGRGGN 182
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
L+ G +T + DD GK +G V F++ + +KAV+ ++ E KG+ L + A +
Sbjct: 245 LAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILYVARAQKK- 303
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ Q +K + + G+N +++ NLD +
Sbjct: 304 -----------TEREEELRKQYEQAKL-------EKLAKYQGVN------LYIKNLDDDI 339
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KLR+ F + G + + ++ D+ S+GFG V F P EA ++++ +N + + + I
Sbjct: 340 DDEKLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIY 399
Query: 232 VRM 234
V +
Sbjct: 400 VAL 402
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + +IALD+ G S+G+G V ++ A +I +N
Sbjct: 134 VFIKNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVN 193
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 194 GMLLNDKKVYV 204
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I D++G +G V +++ + A+ ++ +K+ + V K
Sbjct: 152 FSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKK 211
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ A ++ +KF N V+V NLD V
Sbjct: 212 --------------ERQAKIEQFRAKFTN---------------------VYVKNLDESV 236
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ E+ G + + + D +GKS+GFG V F++ +A +++ LN
Sbjct: 237 KDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALN 286
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD+G RG V F+ + +KAV M+ E +GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLTRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRREFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + ++A+ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDNHGS-RGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F+ EA ++++ +N + + R +
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ +G+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIRGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I +N L +R++ V
Sbjct: 143 VHFETHEAAQQAIVTMNGMLLNDRKVFV 170
>gi|449544433|gb|EMD35406.1| hypothetical protein CERSUDRAFT_124727 [Ceriporiopsis subvermispora
B]
Length = 982
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + + L+++FR AG V+ ++AL DG+SRGFGTV F + +A +++ M N
Sbjct: 267 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFANEADAERAVRMFN 326
Query: 222 NQNLFERRITVRMDRVA 238
R + V D+ +
Sbjct: 327 GFEYNGRALKVHYDKFS 343
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y+V + L+++FR AG V +++L D +SRGFGTV +A +++ M
Sbjct: 111 QLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGFGTVLLASAEDAGRAVDMF 170
Query: 221 NNQNLFERRITVRMDRVADR 240
N R + VR DR+ D
Sbjct: 171 NGYCWQTRTLEVRPDRMEDH 190
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 485 SGQASIQSGGYGNPRAGLDSNRSMNQSSNIE----RDTVVVKNLPPTITWQELRDKFRNC 540
S A++ SG G AG +R S + + V NLP I WQ+L+D FR
Sbjct: 229 SAPAAVYSGLLGGEEAGAALSRPGTGSGGVPALGASRNLFVGNLPFHIQWQDLKDLFRQA 288
Query: 541 GDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
G ++ A++ D G V F +E A+RA+ M + +G+ + V +
Sbjct: 289 GAVQRADVALGADGRSRGFGTVSFANEADAERAVRMFNGFEYNGRALKVHY 339
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 507 SMNQSSNIERDT---VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVR 558
S ++++ +RDT + V NLP + WQ+L+D FR G + A++ D G V
Sbjct: 97 SASRAAGPQRDTRTQLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGFGTVL 156
Query: 559 FDSEWTAKRAIDMMDRTRIDGKIIDV 584
S A RA+DM + + ++V
Sbjct: 157 LASAEDAGRAVDMFNGYCWQTRTLEV 182
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D TGK +G V F+ + KAV +M+ + G+ L + A + K R+
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRA-QKKAERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R L Q S++ G+N +++ NLD +D++K
Sbjct: 274 -----AELKRRFEQLKQERLSRYQ-------------GVN------LYIKNLDDTIDDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F GK +V++ D GKS+GFG V F+ EA +++ +N +++ + +
Sbjct: 203 DDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLF 262
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 263 VGRAQKKAER 272
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 27/191 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+ V ++ D G+ RG V F +P+ +KA+ + + +KL + +A++ K
Sbjct: 222 FSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK-K 280
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR M L Q KF + + P S ++V NL +
Sbjct: 281 DERREM------------LKQ----KFSDNFIAKPNMRWS---------NLYVKNLSESM 315
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+E +LRE+F G++ + ++ ++G+S+GFG V F + E+ Q+ LN + + I
Sbjct: 316 NETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 232 VRM-DRVADRL 241
VR+ +R DR+
Sbjct: 376 VRVAERKEDRI 386
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 39/168 (23%)
Query: 65 NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVD 124
N TGK A + F SP A+ +++ + KG+ + I + D RR G
Sbjct: 55 NSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTG---- 110
Query: 125 RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
F N Y V NLD + L +F G
Sbjct: 111 -------------FANLY---------------------VKNLDSSITSSCLERMFCPFG 136
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+ + ++ ++++G+S+GFG V+FD AV + S L+ ++ +++ V
Sbjct: 137 SILSCKV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL V + L +F G V +V + D G+SRGFG V F +P A +++ L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 264 GLQLGSKKLFV 274
>gi|32425486|gb|AAH14533.3| MYEF2 protein [Homo sapiens]
Length = 211
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 136 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 195
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 196 IKISGREIDV 205
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 134 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 192
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 193 MNGIKISGREIDVRLDRNA 211
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + V+++ D++G RG V F+ + +KAV+ M+ E G++L + A + +G R+
Sbjct: 215 GKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRA-QKRGERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
N + R + Q+ +++ G+N ++V NLD + ++K
Sbjct: 274 N-----ELKRRFEQMKQDRQTRYQ-------------GVN------LYVKNLDDSISDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR VF G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 310 LRTVFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S VG + + + D T + G A + FQ P
Sbjct: 7 GYPLSSLYVGDLHPDVTEAMLYET--FSPVGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 -----------------VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+IS +N L +R++ V
Sbjct: 143 VHFETNEAAQQAISTMNGMLLNDRKVFV 170
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETNEAAQQAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + F N Y V NL +
Sbjct: 171 -------GHFKSHREREAELGAQALAFTNIY---------------------VKNLHVDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN-----NQNLF 226
DE+ L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N Q L+
Sbjct: 203 DEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLY 262
Query: 227 ERRITVRMDR 236
R R +R
Sbjct: 263 VGRAQKRGER 272
>gi|7023737|dbj|BAA92070.1| unnamed protein product [Homo sapiens]
Length = 188
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M+
Sbjct: 113 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIMNG 172
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 173 IKISGREIDV 182
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 111 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 169
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 170 MNGIKISGREIDVRLDRNA 188
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D GKP+G V + P+ KAV+ ++ +G +L + K
Sbjct: 263 FSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQK 322
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R AL Q ++ G+N ++V N++ ++
Sbjct: 323 KSERS----AELKRKYEALKQERVQRY-------------QGVN------LYVKNIEEEL 359
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ LR F G + + ++ +D++G+S+GFG V F+ P EA +++ +N++ + + +
Sbjct: 360 TDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLY 419
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 420 VALAQRKEDR 429
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 42/182 (23%)
Query: 52 LSTVGDVTYVEILNDDTGK-PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S G V + + D+T + G A V FQ P +A++ M+ GR + I + D
Sbjct: 82 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEIIHGRPMRIMWSQRD 141
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
RR G +F+ NLD
Sbjct: 142 PAARRAGNG-----------------------------------------NIFIKNLDRV 160
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D K + + F L G + + ++A D DG S+G+G V F+ A +I +N L ++++
Sbjct: 161 IDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKV 220
Query: 231 TV 232
V
Sbjct: 221 FV 222
>gi|50426851|ref|XP_462023.1| DEHA2G11044p [Debaryomyces hansenii CBS767]
gi|49657693|emb|CAG90505.1| DEHA2G11044p [Debaryomyces hansenii CBS767]
Length = 457
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 57 DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
D+ +I+ + G+ RG A VEF + D VRKA++K E +GR++ +++ G ++
Sbjct: 159 DIVRADIVTN-RGQSRGMATVEFSNKDDVRKAISKYDHHEYRGREIFVRQDYPPPGDKKK 217
Query: 117 MGGGGGVDRDL--SALLQNNSSKFGNTYGLSPQFLESLGINCPLI-NKVFVANLDYKVDE 173
S S +F N +P E P ++FV NL + ++
Sbjct: 218 EVSQPRSSERFPRSTTYSERSDRFSNR---APTSRERFQPPAPKPGTEIFVGNLPFSINW 274
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
+ L+++ R +G+V ++ D GKSRGFGTV F
Sbjct: 275 QALKDLMRKSGEVVRADVRTDNWGKSRGFGTVVF 308
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+V ++ D+ GK RG V F + + +AV + FE +GR+L +
Sbjct: 285 GEVVRADVRTDNWGKSRGFGTVVFSTEEEAARAVEEFQGFEIEGRQLDTRP--------- 335
Query: 116 NMGGGGGVDRDLSA-LLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
G +R+ S+ ++ +N ++ + +F E++ + N +FV+NL + +
Sbjct: 336 --GRVYSQERNSSSDIVSSNPNENTEATHENTEFTENVTGDGEKSNTIFVSNLPWVTNVD 393
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
L E+F G+V N E+ ++ GK G ++F+ A +I+ L+N N
Sbjct: 394 DLYELFETIGRVANAEVQYNEAGKPSGNAVIQFELEELAELAITNLDNYNY 444
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 46 LYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
LY++ T+G V E+ ++ GKP G+A+++F+ +L A+ + + GR L I
Sbjct: 395 LYEL--FETIGRVANAEVQYNEAGKPSGNAVIQFELEELAELAITNLDNYNYGGRDLKIS 452
Query: 106 EA 107
A
Sbjct: 453 YA 454
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL + S ++ S G +T + + D GK +G V F+ + KAV +++ E
Sbjct: 240 IDLNYSEESFEKL--FSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
G+K+ + A + + + + A+ +K+ G+N
Sbjct: 298 INGQKIYVGRAQKKRERLEEL------KKQYEAVRLEKLAKY-------------QGVN- 337
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
+FV NLD +D +KL E F+ G + + ++ +D+ GKS+GFG V F P EA ++
Sbjct: 338 -----LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKA 392
Query: 217 ISMLNNQNLFERRITVRMDRVAD 239
I+ +N + + + + V + + D
Sbjct: 393 ITEMNTRMINGKPLYVALAQRKD 415
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 58/255 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A+L++I S +G V+ + + D K G A V + + KA+ +++ +GR
Sbjct: 65 EATLFEI--FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRP 122
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG---------NTYGLSPQ 147
I + D RR+ G G ++L + N + S FG + +G S
Sbjct: 123 CRIMWSQRDPSARRS-GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKC 181
Query: 148 F------------LESLGINCPLIN---------------------------KVFVANLD 168
F +N L+N ++V N+D
Sbjct: 182 FGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNID 241
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
E+ ++F GK+ ++ + D+DGKS+GFG V F+ AV+++ LN++ + +
Sbjct: 242 LNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQ 301
Query: 229 RITV-RMDRVADRLD 242
+I V R + +RL+
Sbjct: 302 KIYVGRAQKKRERLE 316
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD+G RG V FQ + +KAV M+ E GR L + A
Sbjct: 211 FSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q+ +++ G+N ++V NLD +
Sbjct: 267 --QKRVERQSELKRRFEQLKQDRLTRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N + L
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIL 358
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + ++A+ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQQAITTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREVELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F EA +++ +N + + R +
Sbjct: 203 DEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 143 VHFETHEAAQQAITTMNGMLLNDRKVFV 170
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 35/216 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G ++ + + D++GK RG V F+ + KAV +++ + G+KL + A + K
Sbjct: 248 FSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRA-QKK 306
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + A Q +K+ G N +FV NLD +
Sbjct: 307 SERME-----SLKHQYEAARQEQLNKYQ-------------GYN------LFVKNLDDSI 342
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL------ 225
D+ KL E F+ G + + ++ LD GKS+GFG V + P EA ++I+ ++ + +
Sbjct: 343 DDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLY 402
Query: 226 --FERRITVRMDRVADRLDG--PVRLPEGLKSIGMG 257
+R VR +++ ++ +R+ + GMG
Sbjct: 403 VALAQRKEVRRSQLSQQIQARNQMRMQQAAAQGGMG 438
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 58/255 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
++ L+++ S +G V+ + + D K G A V FQS KA+ +++ KG+
Sbjct: 60 ESDLFEV--FSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEELNYTPIKGKA 117
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG-------------NTYG 143
I + D RRN G G ++L + N + S FG N+ G
Sbjct: 118 CRIMWSQRDPSLRRN-GSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGNSKG 176
Query: 144 LSPQFLESL--------GINCPLIN---------------------------KVFVANLD 168
E +N L+N V+V N++
Sbjct: 177 FGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNIN 236
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
DE KLRE F G + ++ ++ D+ GKSRGFG V F+ +AV+++ LNN+++ +
Sbjct: 237 LNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQ 296
Query: 229 RITV-RMDRVADRLD 242
++ V R + ++R++
Sbjct: 297 KLYVGRAQKKSERME 311
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 217 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 274
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 275 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 309
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 310 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 367
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 132 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 183
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 184 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 215
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 216 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 275
Query: 232 V 232
V
Sbjct: 276 V 276
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 111 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 169
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 170 KMNGMLLNDRKVFVGRFKSRKEREAE 195
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L+++ G +T +++ D G RG V F+ P+ KAV ++H E+ K
Sbjct: 196 DKELFEM--FEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKT 253
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ K R+ ++L + + N Y G+N +
Sbjct: 254 YYVGRAQKKAERQ---------QELKRKFEQYKIERMNRYQ---------GVN------L 289
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+++LR+ F + G + + ++ +D DG+S+GFG V F P EA ++++ +N
Sbjct: 290 YVKNLDDTIDDERLRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMN 347
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 35/172 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+TG+ +G V F+ +++ K++ G+K+ + V
Sbjct: 110 FSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFV--- 166
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR+ DR+ + LG L V++ N+D V
Sbjct: 167 -GRK--------DRE-----------------------KELGQKAKLYTNVYIKNIDENV 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
++K+L E+F G + + ++ DG SRGFG V F+ P EA ++++ L+ +
Sbjct: 195 NDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGK 246
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 49/200 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ STVG V + + D T + G A V FQ+ +A++ M+ KGR
Sbjct: 15 EAMLFE--KFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTMNFDILKGRP 72
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 73 MRIMWSQRDPSLRK--------------------SGVGN--------------------- 91
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K + + F G + + ++A D+ G+S+G+G V F+ A QSI
Sbjct: 92 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVN 151
Query: 219 --MLNNQNLFERRITVRMDR 236
+LN + +F R R DR
Sbjct: 152 GMLLNGKKVFVGRFVGRKDR 171
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++ +++ + GK +G V+F+S + A+ K++ F G+++
Sbjct: 120 FQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIY-------- 171
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R +L N +K+ N Y + NLD V
Sbjct: 172 --------AGKFVRKTDRVLPNPDAKYTNLY---------------------IKNLDPDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E+ LRE F GK+ ++ I+ D++G SRGFG V F+ P +A +++ LN L + +
Sbjct: 203 TEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLY 262
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 263 VARAQKKAER 272
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 26/174 (14%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + + I D+ G RG V F+SP+ ++A+ ++ + + L + A + K R
Sbjct: 215 GKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARA-QKKAERE 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
LL+ + N Q L+ G N V+V N+D V++
Sbjct: 274 Q-------------LLRRQFEEKRNE-----QILKYRGSN------VYVKNIDDNVNDDD 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
LRE F + GK+ + ++ D+ G S+GFG V F P EA ++++ + +F R+
Sbjct: 310 LREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGY-MFHRK 362
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VFV NL +D +L+ +F+ G + + ++ + +DGKS+G+G V+F+ A +I
Sbjct: 99 IGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIE 158
Query: 219 MLN-----NQNLFERRITVRMDRV 237
LN + ++ + + DRV
Sbjct: 159 KLNGFIIDGKQIYAGKFVRKTDRV 182
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH--RFETKGRKLVIKEAV 108
H S G +T +++ D G +G V F +PD KAVN H F K + I +
Sbjct: 313 HFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRK 372
Query: 109 EDK 111
ED+
Sbjct: 373 EDR 375
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|388853710|emb|CCF52678.1| related to HRB1-Poly(A+) RNA-binding protein, involved in the
export of mRNAs from the nucleus to the cytoplasm
[Ustilago hordei]
Length = 514
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 11/196 (5%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + E+L G +G IVE+ S + +KA++++ E +GR++ ++E ED
Sbjct: 99 MREAGNVVFSEVLTLPNGSSKGCGIVEYSSSEEAQKAISQLTNKELEGRQVFVREDREDD 158
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI---------NKV 162
R G G V R YG + G P ++
Sbjct: 159 A--RYGGTPGAVPRGGGRGGFAGGMGGRGGYGPPGRGGFFGGPPMPPYGGGFAGGAPTQL 216
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
F+ NL + V + L+++FR AG V ++ + DG+S+G G V F + +A +I+M +
Sbjct: 217 FITNLPFDVSWQDLKDLFRSAGNVTRADVNMGPDGRSKGTGIVAFANSNDASNAIAMYHG 276
Query: 223 QNLFERRITVRMDRVA 238
+ R + VR+D+ A
Sbjct: 277 YDFRGRILEVRLDKFA 292
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
NC +V+V NL Y V L++ R AG V E+ +G S+G G VE+ EA
Sbjct: 78 NC----RVYVGNLSYGVKWNTLKDFMREAGNVVFSEVLTLPNGSSKGCGIVEYSSSEEAQ 133
Query: 215 QSISMLNNQNLFERRITVRMDRVAD 239
++IS L N+ L R++ VR DR D
Sbjct: 134 KAISQLTNKELEGRQVFVREDREDD 158
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
++FV NL + + L E+F+ GKVE EI D G+S+G G V+F +A +I+
Sbjct: 391 CQQIFVKNLPWSTSNEDLVELFQTTGKVEEAEIQFDH-GRSKGTGVVQFASVDDAETAIA 449
Query: 219 MLNNQNLFERRITVRMDR 236
NN R + + +R
Sbjct: 450 KFNNYVYGGRPLDIEFNR 467
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ + NLP ++WQ+L+D FR+ G++ A++ + KG G+V F + A AI M
Sbjct: 216 LFITNLPFDVSWQDLKDLFRSAGNVTRADVNMGPDGRSKG-TGIVAFANSNDASNAIAMY 274
Query: 573 DRTRIDGKIIDV 584
G+I++V
Sbjct: 275 HGYDFRGRILEV 286
>gi|448115025|ref|XP_004202729.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
gi|359383597|emb|CCE79513.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
Length = 406
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLS 128
G+ RG A VEF + + V KA++K +E GR++ +++ +R +D S
Sbjct: 137 GRSRGMATVEFSNKEDVTKAISKFDHYEFLGREIFVRQDYPPPSDKR---------KDDS 187
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188
++ S + S + ++FV NL + ++ + L+++ R+ G+V
Sbjct: 188 PQAESFSRGYNERNSRSTTSTRDQSLIPKPGTEIFVGNLPFSINWQALKDLMRVTGEVVR 247
Query: 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
++ D GKSRGFGTV F+ EA +++ + RR+ R R ++ D
Sbjct: 248 ADVRTDNWGKSRGFGTVVFNTEEEAAKAVEYFQGYEIEGRRLDTRPGRKSNYAD 301
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 19/185 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ GK RG V F + + KAV +E +GR+L + +
Sbjct: 239 MRVTGEVVRADVRTDNWGKSRGFGTVVFNTEEEAAKAVEYFQGYEIEGRRL------DTR 292
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR++ + D L +N+ N G + N +F +NL +
Sbjct: 293 PGRKSNYADD--ESDAQQALPSNTDFTDNVVGEGER-----------SNTIFASNLPWAT 339
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+E L E+F GKV E+ L++ GK G ++F+ A +I+ L+N N R +
Sbjct: 340 NEDDLYELFETIGKVSRAELQLNEKGKPSGNAVIQFEQEENADVAIANLDNYNYGGRDLK 399
Query: 232 VRMDR 236
+ R
Sbjct: 400 ITFAR 404
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
RR GG RD A N S+ + Y + N +F+ N+ +
Sbjct: 63 RRGYKRGGYRGRDFIARRDFNYSRTPDDYRSKSE--------RNYDNSIFIGNIPFSCTS 114
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
K ++E+F+ ++ +I + G+SRG TVEF + + ++IS ++ R I VR
Sbjct: 115 KDIQELFKDDFQLIKADIVTSR-GRSRGMATVEFSNKEDVTKAISKFDHYEFLGREIFVR 173
Query: 234 MD 235
D
Sbjct: 174 QD 175
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP +I WQ L+D R G++ A++ K +G G V F++E A +A++
Sbjct: 221 IFVGNLPFSINWQALKDLMRVTGEVVRADVRTDNWGKSRG-FGTVVFNTEEEAAKAVEYF 279
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 280 QGYEIEGRRLDT 291
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ G +T + DD GK RG V F + + AV +H + KGRKL + A
Sbjct: 205 VQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLFVARA- 263
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
+ K R + R SK+ G+N +++ NL+
Sbjct: 264 QKKAEREEE-----LRRSYEQAKMEKMSKY-------------QGVN------LYIKNLE 299
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+D+++LR F G + + ++ D+ G S+GFG V F P EA ++++ +NN+ + +
Sbjct: 300 DDIDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTK 359
Query: 229 RITVRM 234
+ V +
Sbjct: 360 PLYVSL 365
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 84/190 (44%), Gaps = 36/190 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ G+ +G V +++ + A+ ++ +K+ + + K
Sbjct: 115 FAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRK 174
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + ++ ++F N Y V N+D +V
Sbjct: 175 --------------ERQSKIEEMKNQFTNIY---------------------VKNVDPEV 199
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+++ ++F G++ + + +D +GKSRGFG V FD EA ++ L++ ++ R++
Sbjct: 200 TQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLF 259
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 260 VARAQKKAER 269
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD ++D K L + F G V + ++A D+ G+S+G+G V ++ A +I +N
Sbjct: 97 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVN 156
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 157 GMLLNDKKVYV 167
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 140 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 195
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 196 --QKKVERQAELKRKFEQLKQERISRY-------------QGVN------LYIKNLDDTI 234
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 235 DDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 283
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+
Sbjct: 48 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN------------------ 88
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +V
Sbjct: 89 -----------------GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 131
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 132 DDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 191
Query: 232 V 232
V
Sbjct: 192 V 192
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 27 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 85
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 86 KMNGMLLNDRKVFVGRFKSRKEREAE 111
>gi|255731382|ref|XP_002550615.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131624|gb|EER31183.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 315
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 75 AIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSA----- 129
A VEF+S + VR A+NK R+E +GR++ +++ + + G G R +
Sbjct: 2 ATVEFKSREDVRDAINKYDRYEYRGREIFVRQDYPPPDKKNDYGPPRGRGRTYDSRASGG 61
Query: 130 ------------LLQNNSSKFGNTYGLSPQ---FLESLGINCPLINKVFVANLDYKVDEK 174
+ + YG S + + + P +VFV NL + ++ +
Sbjct: 62 RYGGDRYGDRDRYRGGDRYGGSDRYGGSRRGENYAPPPPPSKPGT-EVFVGNLPFSINWQ 120
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
L+++ R AG+V ++ LD G+SRGFGTV F+ EA +++ M + R++ R
Sbjct: 121 ALKDLMRDAGEVVRADVRLDNFGRSRGFGTVVFNTEEEATKAVEMFQGYEIEGRKLDTR 179
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 20/191 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE-- 109
+ G+V ++ D+ G+ RG V F + + KAV +E +GRKL +
Sbjct: 126 MRDAGEVVRADVRLDNFGRSRGFGTVVFNTEEEATKAVEMFQGYEIEGRKLDTRPGRSTG 185
Query: 110 --------DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
++ R GG + S+ N +S+F T G++ +S +
Sbjct: 186 SSSSSSGYERDSYRGSATGGSISEGRSSAPANKNSEF--TEGVTGMGEKS--------DT 235
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + L E+F G+ EI DG+ G V+F+ A +I LN
Sbjct: 236 IFVENLPFATQNDDLYELFETVGRTTKAEIQYSADGRPSGNAVVQFEIADLAESAIQQLN 295
Query: 222 NQNLFERRITV 232
N R I +
Sbjct: 296 NYTYGGRDIHI 306
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP +I WQ L+D R+ G++ A++ + +G G V F++E A +A++M
Sbjct: 108 VFVGNLPFSINWQALKDLMRDAGEVVRADVRLDNFGRSRG-FGTVVFNTEEEATKAVEMF 166
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 167 QGYEIEGRKLDT 178
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 46 LYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
LY++ TVG T EI G+P G+A+V+F+ DL A+ +++ + GR + I
Sbjct: 250 LYEL--FETVGRTTKAEIQYSADGRPSGNAVVQFEIADLAESAIQQLNNYTYGGRDIHIS 307
Query: 106 EAVE 109
A +
Sbjct: 308 YATK 311
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRATRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N +
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAHQAIATMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + + R +
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPVRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 143 VHFETHEAAHQAIATMNGMLLNDRKVFV 170
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD +D K L + F L G + + ++AL DGKSRGFG V F+ A +I+ LN
Sbjct: 138 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 197
Query: 222 NQNLFERRITV-RMDRVADRLDG 243
+ E+ + V + + ADR DG
Sbjct: 198 GMQIGEKTVYVAQFKKTADRSDG 220
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD+G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLTRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N +
Sbjct: 306 DDEKLRKEFAPYGMITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + + A+ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARALEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F+ +A ++++ +N + + R +
Sbjct: 203 DERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A +I +N L +R++ V
Sbjct: 143 VHFETHEAAQNAIRTMNGMLLNDRKVFV 170
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 41/176 (23%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T + D GK RG V F+ KAV++++ E KG+KL + A
Sbjct: 243 GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRA-------- 294
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF----LESL----GINCPLINKVFVANL 167
K+ L Q+ LE L G+N +FV NL
Sbjct: 295 -------------------QKKYERLQELKKQYEAARLEKLAKYQGVN------LFVKNL 329
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +D++KL+E F G + + ++ D+ G SRGFG V F P EA ++I+ N Q
Sbjct: 330 DDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQ 385
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ R A+ + +++ + V K
Sbjct: 146 FSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK 205
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L+ +KF N V+V N+D +
Sbjct: 206 --------------DRQSKLEEVKAKFTN---------------------VYVKNIDQET 230
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
+++ E+F GK+ + + D +GK RGFG V F+ A +++ LN Q L+
Sbjct: 231 SQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLY 290
Query: 227 ERRITVRMDRVAD 239
R + +R+ +
Sbjct: 291 VGRAQKKYERLQE 303
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+++ NL +D K L E F G + + ++A D++G SRGFG V F++ +A +I
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 219 --MLNNQNLFERRITVRMDR 236
++N+Q ++ + DR
Sbjct: 188 GMLMNDQEVYVALHVSKKDR 207
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 179 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 236
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 237 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 271
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 272 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 329
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 94 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 145
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 146 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 177
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 178 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 237
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 238 VGRAQKKVERQAE 250
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 73 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIE 131
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 132 KMNGMLLNDRKVFVGRFKSRKEREAE 157
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|443921645|gb|ELU41222.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 726
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F+ NL ++ + L+++FR AG++ ++AL DG+SRGFGTV + +A ++++M
Sbjct: 233 QLFIGNLPFQCQWQDLKDLFRAAGQILRADVALGPDGRSRGFGTVVYAKESDAARAVTMF 292
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + V DR +
Sbjct: 293 NGYDYNGRILKVHYDRYS 310
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++ M
Sbjct: 71 QLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGKATDMY 130
Query: 221 NNQNLFERRITVRMDRVADRLD 242
N R + VR DR+ LD
Sbjct: 131 NGYVWQNRTLEVRPDRLPPELD 152
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D TGK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERLSRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+++L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 203 DDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ LRE+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 228 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 283
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 284 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 322
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 323 DDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 371
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 136 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 187
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 188 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 219
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 220 DDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 279
Query: 232 V 232
V
Sbjct: 280 V 280
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 41 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKP 98
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 99 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 117
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 176
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 177 GMLLNDRKVFVGRFKSRKEREAE 199
>gi|386765401|ref|NP_001247004.1| rumpelstiltskin, isoform B [Drosophila melanogaster]
gi|383292590|gb|AFH06322.1| rumpelstiltskin, isoform B [Drosophila melanogaster]
Length = 214
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG + YV++ D++GK RG IVEF+ P+ V+KA+ KM+R+E GR+LV+K ED G +
Sbjct: 81 VGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVK---EDHGEQ 137
Query: 115 RNMGG 119
R+ G
Sbjct: 138 RDQYG 142
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
NC +V+++N+ Y + L+++FR + G +E V++ D+ GK+RG G VEF P
Sbjct: 56 NC----RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 111
Query: 214 VQSISMLNNQNLFERRITVRMD 235
+++ +N + R + V+ D
Sbjct: 112 QKALEKMNRYEVNGRELVVKED 133
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D TGK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 217 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 272
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 273 --QKKVERQAELKRRFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 311
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 312 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 360
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 82/193 (42%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+
Sbjct: 125 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMN------------------ 165
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +
Sbjct: 166 -----------------GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDM 208
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+++L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 209 DDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 268
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 269 VGRAQKKVERQAE 281
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 104 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 162
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 163 KMNGMLLNDRKVFVGRFKSRKEREAE 188
>gi|392561750|gb|EIW54931.1| hypothetical protein TRAVEDRAFT_83958, partial [Trametes versicolor
FP-101664 SS1]
Length = 192
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 151 SLGINCPLIN------KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+LG+ P N +FV NL + + + L+++FR AG V+ ++AL DG+SRGFGT
Sbjct: 101 NLGVGVPGTNGGQSSRNLFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGT 160
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
V F + +A +++ M N R + V D+
Sbjct: 161 VSFSNETDAERAVRMFNGYEYNGRPLKVHFDK 192
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y+V + L+++FR AG V +++L D +SRG+GTV +A +++ M N
Sbjct: 1 LPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGRAVDMFNGYTWQ 60
Query: 227 ERRITVRMDRVADRL 241
R + VR DR+ + L
Sbjct: 61 TRTLEVRPDRMGEEL 75
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP I WQ+L+D FR G ++ A++ D G V F +E A+RA+ M +
Sbjct: 118 LFVGNLPFHIQWQDLKDLFRQAGAVQRADVALGADGRSRGFGTVSFSNETDAERAVRMFN 177
Query: 574 RTRIDGKIIDVTF 586
+G+ + V F
Sbjct: 178 GYEYNGRPLKVHF 190
>gi|321254986|ref|XP_003193270.1| protein-nucleus import-related protein [Cryptococcus gattii WM276]
gi|317459740|gb|ADV21483.1| protein-nucleus import-related protein, putative [Cryptococcus
gattii WM276]
Length = 562
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V + E+L G+ +G IVEF S + ++A ++ GR + I+E E+
Sbjct: 199 GKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKAELSDKPFFGRSVFIREDREETA--- 255
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
G + + L GN P G P N +FV NL + +
Sbjct: 256 -RFGAPPIPGKIGIALGEARHFLGNQ---QPHGFHGHGPAVPNRN-LFVGNLPLQASWQD 310
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
L+++ R AG+V +I DG +G GTV F + +A +I M N + F + VR D
Sbjct: 311 LKDLMRQAGEVIRADIGFRPDGTPKGNGTVVFLNADDAKAAIEMFNGFDWFGNVLEVRED 370
Query: 236 RVA 238
R A
Sbjct: 371 RFA 373
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+++V NL Y + K L R GKV E+ G+S+G G VEF EA ++ +
Sbjct: 174 NRLYVGNLAYDCNYKDLANFMERGGGKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKA 233
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
L+++ F R + +R DR G +P IG+ LG
Sbjct: 234 ELSDKPFFGRSVFIREDREETARFGAPPIP---GKIGIALG 271
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRATRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N +
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAHQAIATMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + + R +
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPVRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 143 VHFETHEAAHQAIATMNGMLLNDRKVFV 170
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 35/194 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V V I+ D GK RG V F+SPD +KAV ++ +KL + A + K
Sbjct: 227 FSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRA-QKK 285
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPL----INKVFVANL 167
R+ LL++ E +NC + + ++V NL
Sbjct: 286 AERQE-------------LLKH----------------EKEMVNCNIGKEKASNLYVKNL 316
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D VD+ KL+E F G++ + ++ G S+GFG V F EA ++++ LN L
Sbjct: 317 DASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 228 RRITVRM-DRVADR 240
R + + M R DR
Sbjct: 377 RSLYIAMAQRKEDR 390
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 41/198 (20%)
Query: 44 ASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
ASL I G++ ++ ++ GK + V+F S D A+N ++ G+KL
Sbjct: 131 ASLQDI--FCKFGNILSCKV-AEENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLF 187
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+ + V+ K R+ + +KF N Y
Sbjct: 188 VSKFVK-KCERKE---------------ASEETKFTNVY--------------------- 210
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V NL + E +R+ F GKV V I D +GKSRGFG V F+ P EA +++ LN
Sbjct: 211 VKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGA 270
Query: 224 NLFERRITV-RMDRVADR 240
L +++ V R + A+R
Sbjct: 271 MLGSKKLFVGRAQKKAER 288
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI---KFAEIKGKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ VKNL P+I L+D F G+I K AE GK G V+FDS+ +A A++ ++
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALNALND 178
Query: 575 TRIDGKIIDVTFF 587
T +DGK + V+ F
Sbjct: 179 TMLDGKKLFVSKF 191
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI---- 217
+FV NLD ++ L+++F G + + ++A +++GKS+ FG V+FD A ++
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 218 -SMLNNQNLFERRITVRMDR 236
+ML+ + LF + + +R
Sbjct: 178 DTMLDGKKLFVSKFVKKCER 197
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
++V +LD +V E +L +VF G + +V + D GKS + V F HP +A ++++ L
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 221 NNQNL 225
N+ L
Sbjct: 91 NHTKL 95
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL + S ++ + G +T + + D GK +G V F++ D KAV +++ E
Sbjct: 239 IDLNYSEESFEKL--FAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKE 296
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
G+K+ + A + + + + A +K+ G+N
Sbjct: 297 INGQKIYVGRAQKKRERLEEL------KKQYEAARLEKLAKY-------------QGVN- 336
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
+FV NLD +D +KL E F+ G + + ++ +D GKS+GFG V F P EA ++
Sbjct: 337 -----LFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKA 391
Query: 217 ISMLNNQNLFERRITVRMDRVAD 239
I+ +N + + + + V + + D
Sbjct: 392 ITEMNTRMINGKPLYVALAQRKD 414
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 108/255 (42%), Gaps = 58/255 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A+L++I S +G V+ + + D K G A V + + KA+ +++ +GR
Sbjct: 64 EATLFEI--FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRP 121
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG---------NTYGLSPQ 147
I + D RR+ G G ++L + N + S FG + +G S
Sbjct: 122 CRIMWSQRDPSARRS-GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKC 180
Query: 148 F------------LESLGINCPLIN---------------------------KVFVANLD 168
F +N L+N ++V N+D
Sbjct: 181 FGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNID 240
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
E+ ++F GK+ ++ + D+DGKS+GFG V F++ AV+++ LN++ + +
Sbjct: 241 LNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQ 300
Query: 229 RITV-RMDRVADRLD 242
+I V R + +RL+
Sbjct: 301 KIYVGRAQKKRERLE 315
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ LRE+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D +GK RG V ++ + KAV +M+ E G+ + + A ++
Sbjct: 215 GKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRA------QK 268
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
M + R L Q S++ G+N +++ NLD +D++K
Sbjct: 269 KMERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLF 226
D+++L+E+F GK +V++ D GKSRGFG V ++ +A +++ + LN + +F
Sbjct: 203 DDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVF 262
Query: 227 ERRITVRMDRVAD 239
R +M+R A+
Sbjct: 263 VGRAQKKMERQAE 275
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 38/190 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++ +++ + GK +G V+F+S + A+ K++ F G+++
Sbjct: 140 FQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIY-------- 191
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R +L N +K+ N Y + NLD V
Sbjct: 192 --------AGKFVRKTDRVLPNPDAKYTNLY---------------------IKNLDPDV 222
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E+ LRE F GK+ ++ I+ D++G SRGFG V F+ P +A +++ LN L + +
Sbjct: 223 TEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLY 282
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 283 VARAQKKAER 292
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 26/174 (14%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + + I D+ G RG V F+SP+ ++A+ ++ + + L + A + K R
Sbjct: 235 GKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARA-QKKAERE 293
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
LL+ + N Q L+ G N V+V N+D V++
Sbjct: 294 Q-------------LLRRQFEEKRNE-----QILKYRGSN------VYVKNIDDNVNDDD 329
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
LRE F + GK+ + ++ D+ G S+GFG V F P EA ++++ + +F R+
Sbjct: 330 LREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGY-MFHRK 382
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH--RFETKGRKLVIKEAV 108
H S G +T +++ D G +G V F +PD KAVN H F K + I +
Sbjct: 333 HFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRK 392
Query: 109 EDK 111
ED+
Sbjct: 393 EDR 395
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN---- 221
NL +D +L+ +F+ G + + ++ + +DGKS+G+G V+F+ A +I LN
Sbjct: 126 NLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFII 185
Query: 222 -NQNLFERRITVRMDRV 237
+ ++ + + DRV
Sbjct: 186 DGKQIYAGKFVRKTDRV 202
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ LRE+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + D+ GK +G + F++ + KAV+ ++ E G+ L + A +
Sbjct: 240 FSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQKK- 298
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ Q +K + + G+N +++ NLD +
Sbjct: 299 -----------TEREEELRKQYEQAKL-------EKLAKYQGVN------LYIKNLDDDI 334
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KLR+ F + G + + ++ D+ G S+GFG V F P EA ++++ +N + + + I
Sbjct: 335 DDEKLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIY 394
Query: 232 VRM 234
V +
Sbjct: 395 VAL 397
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + +IALD+ G S+G+G V ++ A +I
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVD 188
Query: 219 --MLNNQNLFERRITVRMDRVA 238
+LN++ ++ R R +R A
Sbjct: 189 GMLLNDKKVYVGRHIPRKERQA 210
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 74/170 (43%), Gaps = 35/170 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I D++G +G V +++ + A+ + +K+ + + K
Sbjct: 147 FSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRK 206
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ A ++ +KF N V+V NLD +
Sbjct: 207 --------------ERQAKIEQIRAKFTN---------------------VYVKNLDESI 231
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++++ +E+F G + + + D++GKS+GFG + F++ +A +++ LN
Sbjct: 232 NDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLN 281
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 233 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 288
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 289 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 327
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 328 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 376
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 141 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 192
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 193 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 224
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 225 DDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 284
Query: 232 V 232
V
Sbjct: 285 V 285
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 46 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 103
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 104 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 122
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 181
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 182 GMLLNDRKVFVGRFKSRKEREAE 204
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ LRE+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|344299844|gb|EGW30197.1| hypothetical protein SPAPADRAFT_63810 [Spathaspora passalidarum
NRRL Y-27907]
Length = 433
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV---EDKGGRRNMGGGGGVDR 125
G+ RG A +EF + + VR A+ K R E +GR++ +++ E K R R
Sbjct: 147 GRSRGMATIEFNNKEDVRSAIEKFDRSEYRGREIFVRQDYPPPEKKEEFRERRETYDNRR 206
Query: 126 DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185
D S + + P C ++FV NL + ++ + L+++ R AG
Sbjct: 207 DKSYESRRRDQHQQHQQSSKP--------GC----EIFVGNLPFSINWQALKDLMRKAGD 254
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
V ++ +D GKSRGFGTV F EA +++ M + R++ R
Sbjct: 255 VIRADVRMDNWGKSRGFGTVVFGTEEEANKAVEMFQGYEIEGRKLDTR 302
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 7/172 (4%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ GDV ++ D+ GK RG V F + + KAV +E +GRKL + +
Sbjct: 249 MRKAGDVIRADVRMDNWGKSRGFGTVVFGTEEEANKAVEMFQGYEIEGRKL------DTR 302
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR G + + + +F + + + ++V+NL +
Sbjct: 303 PGRNQSSASNGSNTSDRSSYRERERASSQPVVKPSEFTDGVTAGGERSDTIYVSNLPFAT 362
Query: 172 DEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNN 222
L E+F G+ EI LD G+ G V+F+ + +I LNN
Sbjct: 363 QNDDLFELFETVGRTTKAEIILDPITGRPSGNAVVQFELAELSDNAIENLNN 414
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP +I WQ L+D R GD+ A++ K +G G V F +E A +A++M
Sbjct: 231 IFVGNLPFSINWQALKDLMRKAGDVIRADVRMDNWGKSRG-FGTVVFGTEEEANKAVEMF 289
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 290 QGYEIEGRKLDT 301
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD+G RG V F+ + +KAV M+ + GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+N + R Q+ ++ C +N ++V NLD +
Sbjct: 270 GERQN-----ELKRRFEHTKQDRLNR------------------CQGVN-LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + ++A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQQAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L ++ F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARATAFTNIY---------------------VKNLPGHV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + R +
Sbjct: 203 DERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+IS +N L +R++ V
Sbjct: 143 VHFETHEAAQQAISTMNGMLLNDRKVFV 170
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D TGK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRRFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+++L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 203 DDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 26/184 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G ++ D+ G + V +++ + R+AV +MH E G+++ + A + K
Sbjct: 265 FHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRA-QKK 323
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R + + SK+ G+N +FV N+D +
Sbjct: 324 FEREE-----ELRRQYEKIREEKLSKYQ-------------GVN------LFVKNIDESI 359
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
D++KLR+ F + G + + +I +D K G S+GFG V F +P EA ++++ +NN+ L + I
Sbjct: 360 DDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRMLANKPI 419
Query: 231 TVRM 234
V +
Sbjct: 420 YVAL 423
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N+D VD+K E+F G + + +D++G S+ FG V +++ +A +++ ++
Sbjct: 247 IYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMH 306
Query: 222 NQNLFERRITV 232
+ + ++I V
Sbjct: 307 EKEIGGKQIYV 317
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD +D K L + F L G + + ++AL DGKSRGFG V F+ A +I+ LN
Sbjct: 139 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 198
Query: 222 NQNLFERRITV-RMDRVADRLDG 243
+ E+ + V + + ADR DG
Sbjct: 199 GMQIGEKTVYVAQFKKTADRSDG 221
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 228 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 283
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 284 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 322
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 323 DDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 371
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 136 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 187
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 188 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 219
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 220 DDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 279
Query: 232 V 232
V
Sbjct: 280 V 280
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 41 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKP 98
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 99 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 117
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 176
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 177 GMLLNDRKVFVGRFKSRKEREAE 199
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 41/203 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I++D+ G RG V F++ + R A+ K++ G+K+ +
Sbjct: 35 FSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARNAIEKVNGMLLNGKKVFV------- 86
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR N + LE +G N V++ N ++
Sbjct: 87 -GR----------------FMNRRER-----------LEQMGDKMKKFNNVYIKNFSEEI 118
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+ F GK+ + ++ DGK RGFG V ++ P A ++++ +NN+ E+ +
Sbjct: 119 DDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLY 178
Query: 232 V-----RMDRVADRLDGPVRLPE 249
V R +R A+ D RL +
Sbjct: 179 VGRAQKRAERQAELKDKFDRLKQ 201
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G + +++ GK RG V ++ P+ KAV +M+ + + L + A K
Sbjct: 127 FETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRA--QK 184
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R DR L Q +++ G+N ++V NLD +
Sbjct: 185 RAERQAELKDKFDR----LKQERMNRYQ-------------GVN------LYVKNLDDSI 221
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G+S+GFG V F P EA ++++ +N
Sbjct: 222 DDEKLRKEFSAFGTITSAKV-MTEGGRSKGFGFVCFSSPEEATKAVTEMN 270
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + +I D+ G SRG+G V F+ A +I
Sbjct: 14 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARNAIE 72
Query: 219 -----MLNNQNLFERRITVRMDRV 237
+LN + +F R R +R+
Sbjct: 73 KVNGMLLNGKKVFVGRFMNRRERL 96
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVMKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D TGK RG + ++ + KAV M+ E G+ + + A ++
Sbjct: 215 GKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRA------QK 268
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
M + R L Q S++ G+N +++ NLD +D++K
Sbjct: 269 KMERQAELKRKFEMLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLF 226
++++L+E+F GK +V++ D GKSRGFG + ++ +A +++ + LN + +F
Sbjct: 203 NDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVF 262
Query: 227 ERRITVRMDRVAD 239
R +M+R A+
Sbjct: 263 VGRAQKKMERQAE 275
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|302675499|ref|XP_003027433.1| hypothetical protein SCHCODRAFT_258480 [Schizophyllum commune H4-8]
gi|300101120|gb|EFI92530.1| hypothetical protein SCHCODRAFT_258480 [Schizophyllum commune H4-8]
Length = 1407
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++FV NL Y+V + L+++FR AG V +++L DG+SRG+GT +A ++I M
Sbjct: 262 TQLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDGRSRGYGTALLATAEDAGRAIDM 321
Query: 220 LNNQNLFERRITVRMDRV 237
N + R + VR+DR+
Sbjct: 322 FNGYSWQTRVLEVRLDRM 339
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAG-KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+FV NL + V + L+++FR +G + ++AL DG+SRGFGTV F +A ++ ++
Sbjct: 439 LFVGNLPFHVQWQDLKDLFRSSGGTILRADVALGADGRSRGFGTVTFASEADAERARALF 498
Query: 221 NNQNLFERRITVRMDRVA 238
+ R++ V D+ +
Sbjct: 499 DGYEFNGRQLKVHYDKFS 516
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCG------DIKF-AEIKGKGDIGLVRFDSEWTAKRAID 570
++ V NLP + WQ+L+D FR+ G D+ A+ + +G G V F SE A+RA
Sbjct: 438 SLFVGNLPFHVQWQDLKDLFRSSGGTILRADVALGADGRSRG-FGTVTFASEADAERARA 496
Query: 571 MMDRTRIDGKIIDVTF 586
+ D +G+ + V +
Sbjct: 497 LFDGYEFNGRQLKVHY 512
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAID 570
R + V NLP + WQ+L+D FR G + A++ D G + A RAID
Sbjct: 261 RTQLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDGRSRGYGTALLATAEDAGRAID 320
Query: 571 MMDRTRIDGKIIDV 584
M + ++++V
Sbjct: 321 MFNGYSWQTRVLEV 334
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 57/252 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ ST G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 25 EAMLFE--KFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDAIKGRP 82
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------Y 142
+ I + D R++ G G ++L + N + S FGN Y
Sbjct: 83 IRIMWSQRDPSLRKS-GVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNGSLGY 141
Query: 143 GL---------------------------------SPQFLESLGINCPLINKVFVANLDY 169
G + LE LG V+V NL+
Sbjct: 142 GFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNE 201
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+D+KKLRE+F + GK+ + ++ ++G+ RGFG V FD A +++ LNN+ + +
Sbjct: 202 TMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKE 261
Query: 230 ITV-RMDRVADR 240
I V R + A+R
Sbjct: 262 IYVGRAQKKAER 273
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 90/190 (47%), Gaps = 27/190 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G + +++N + G+ RG V F + KAV +++ E +G+++ + A + K
Sbjct: 212 FEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRA-QKK 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L + + N Y G+N ++V NLD ++
Sbjct: 271 AERQA---------ELKEKFERMKMERINRYQ---------GVN------LYVKNLDEQI 306
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + + + + G+++GFG V F P EA ++++ +N + + + +
Sbjct: 307 DDERLRKEFSQFGTITSARV-MTEGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLY 365
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 366 VALAQRKEDR 375
>gi|405119506|gb|AFR94278.1| RNP domain-containing protein [Cryptococcus neoformans var. grubii
H99]
Length = 564
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V + E+L G+ +G IVEF S + ++A ++ GR + I+E E+
Sbjct: 196 GKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKAELSDKPFFGRSVFIREDREETA--- 252
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
G + + L GN P G P N +FV NL + +
Sbjct: 253 -RFGAPPIPGKIGIALGEARHFLGNQ---QPHGFHGHGPAIPNRN-LFVGNLPLQASWQD 307
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
L+++ R AG+V +I DG +G GTV F + +A +I M N + F + VR D
Sbjct: 308 LKDLMRQAGEVIRADIGFRPDGTPKGNGTVVFLNADDAKAAIEMFNGFDWFGNVLEVRED 367
Query: 236 RVA 238
R A
Sbjct: 368 RFA 370
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+++V NL Y + K L R GKV E+ G+S+G G VEF EA ++ +
Sbjct: 171 NRLYVGNLAYDCNYKDLANFMERGGGKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKA 230
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
L+++ F R + +R DR G +P IG+ LG
Sbjct: 231 ELSDKPFFGRSVFIREDREETARFGAPPIP---GKIGIALG 268
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 202 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRA---- 257
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 258 --QKKVERQAELKRKFEQLKQERISRY-------------QGVN------LYIKNLDDTI 296
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N +
Sbjct: 297 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 347
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+
Sbjct: 110 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN------------------ 150
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +V
Sbjct: 151 -----------------GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 193
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 194 DDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 253
Query: 232 V 232
V
Sbjct: 254 V 254
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 15 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 72
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 73 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 91
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 150
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 151 GMLLNDRKVFVGRFKSRKEREAE 173
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 56 GDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G V VE+ D +TG RG V +S R A+N + F+ GR++ +K A R
Sbjct: 152 GTVLSVEVSRDAETGISRGCGFVTMRSLAEARTAINALDGFDLDGREMFVKLAAHVIASR 211
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
RN GG +T + ES K++V NL + V +
Sbjct: 212 RNPGG------------------LSHTPPMKDHIFESR-------YKIYVGNLAWSVQPQ 246
Query: 175 KLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
LRE F G V + + D K G+SR +G + F E +++ LNN R I VR
Sbjct: 247 HLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFS-SAEELEAALQLNNTEFHGRDIIVR 305
Query: 234 MDRV 237
V
Sbjct: 306 EAHV 309
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N ++
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|74272657|gb|ABA01124.1| G strand binding-protein 1/telomere binding-protein [Chlamydomonas
incerta]
Length = 225
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 12/195 (6%)
Query: 52 LSTVGDVTYVEILNDDTG---KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
G+V Y ++ DD G + +G IVEF+SP+ A+ ++ E GR+++++E
Sbjct: 31 FRECGNVVYTNVMRDDDGPGSRSKGWGIVEFESPEEALHAIQTLNGAELGGRRILVREDR 90
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFL-------ESLGINCPLINK 161
ED+ ++ G G +R G E+ G + L +
Sbjct: 91 EDRDVKQADGATGAPERAPRPARGAGRGAANGGRGAGRGGRGAPGAAPEATGESSGL--Q 148
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ V + + ++L+++F G V+ ++ DG+SRG+GTV+F A +++ +
Sbjct: 149 IVVQGIPWAYTWRELKDMFAEVGGVDRADVVTGYDGRSRGYGTVKFTTKEAAEAAVARYH 208
Query: 222 NQNLFERRITVRMDR 236
L RR+ V +DR
Sbjct: 209 ESELEGRRLAVFIDR 223
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI---------KGKGDIGLVRFDSEWTAKRAI 569
V NL +WQ+L+DKFR CG++ + + + KG G+V F+S A AI
Sbjct: 13 CFVGNLAWKTSWQDLKDKFRECGNVVYTNVMRDDDGPGSRSKG-WGIVEFESPEEALHAI 71
Query: 570 DMMDRTRIDGKII 582
++ + G+ I
Sbjct: 72 QTLNGAELGGRRI 84
>gi|58261642|ref|XP_568231.1| protein-nucleus import-related protein [Cryptococcus neoformans
var. neoformans JEC21]
gi|57230313|gb|AAW46714.1| protein-nucleus import-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 563
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V + E+L G+ +G IVEF S + ++A ++ GR + I+E E+
Sbjct: 196 GKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKAELSDKAFFGRSVFIREDREETA--- 252
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
G + + L GN P G P N +FV NL + +
Sbjct: 253 -RFGAPPIPGKIGIALGEARHFLGNQ---QPHGFHGHGPAIPNRN-LFVGNLPLQASWQD 307
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
L+++ R AG+V +I DG +G GTV F + +A +I M N + F + VR D
Sbjct: 308 LKDLMRQAGEVIRADIGFRPDGTPKGNGTVVFLNADDAKAAIEMFNGFDWFGNVLEVRED 367
Query: 236 RVA 238
R A
Sbjct: 368 RFA 370
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+++V NL Y + K L R GKV E+ G+S+G G VEF EA ++ +
Sbjct: 171 NRLYVGNLAYDCNYKDLANFMERGGGKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKA 230
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
L+++ F R + +R DR G +P IG+ LG
Sbjct: 231 ELSDKAFFGRSVFIREDREETARFGAPPIP---GKIGIALG 268
>gi|134115505|ref|XP_773466.1| hypothetical protein CNBI0800 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256092|gb|EAL18819.1| hypothetical protein CNBI0800 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 563
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V + E+L G+ +G IVEF S + ++A ++ GR + I+E E+
Sbjct: 196 GKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKAELSDKPFFGRSVFIREDREETA--- 252
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
G + + L GN P G P N +FV NL + +
Sbjct: 253 -RFGAPPIPGKIGIALGEARHFLGNQ---QPHGFHGHGPAIPNRN-LFVGNLPLQASWQD 307
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
L+++ R AG+V +I DG +G GTV F + +A +I M N + F + VR D
Sbjct: 308 LKDLMRQAGEVIRADIGFRPDGTPKGNGTVVFLNADDAKAAIEMFNGFDWFGNVLEVRED 367
Query: 236 RVA 238
R A
Sbjct: 368 RFA 370
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
N+++V NL Y + K L R GKV E+ G+S+G G VEF EA ++ +
Sbjct: 171 NRLYVGNLAYDCNYKDLANFMERGGGKVVFSEVLTTPAGQSKGCGIVEFASQEEAQRAKA 230
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
L+++ F R + +R DR G +P IG+ LG
Sbjct: 231 ELSDKPFFGRSVFIREDREETARFGAPPIP---GKIGIALG 268
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N ++
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|452823975|gb|EME30981.1| poly(A) binding protein isoform 2 [Galdieria sulphuraria]
Length = 223
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 37/192 (19%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
I HL +VG + +IL ++ G+ G AIVEF S + ++A+ ++ E GRK++I+E
Sbjct: 61 IQHLGSVGKIATSQILTNNLGRSVGGAIVEFDSEEAAKRAIETLNDSELDGRKIIIREDR 120
Query: 109 ED---KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
ED RR M G P+ L++ ++ V
Sbjct: 121 EDFSLHDPRRKMKQG------------------------DPRALQN--------RRIVVW 148
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEI--ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
NL V ++L+++F+ +G + E+ +DG GTV F+ +A +++ + +
Sbjct: 149 NLPSHVRWQELKDLFKESGNILWTEVRNVRARDGGETVMGTVLFESEEDARRAVERMRGK 208
Query: 224 NLFERRITVRMD 235
N R I R D
Sbjct: 209 NFLGRIIDCRFD 220
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 503 DSNRSMNQSS--NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK-------GKGD 553
D R M Q ++ +VV NLP + WQEL+D F+ G+I + E++ G+
Sbjct: 127 DPRRKMKQGDPRALQNRRIVVWNLPSHVRWQELKDLFKESGNILWTEVRNVRARDGGETV 186
Query: 554 IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
+G V F+SE A+RA++ M G+IID F
Sbjct: 187 MGTVLFESEEDARRAVERMRGKNFLGRIIDCRF 219
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VFV NL Y+ L + GK+ +I + G+S G VEFD A ++I L
Sbjct: 45 RVFVGNLAYRTTLDDLIQHLGSVGKIATSQILTNNLGRSVGGAIVEFDSEEAAKRAIETL 104
Query: 221 NNQNLFERRITVRMDRVADRLDGPVR 246
N+ L R+I +R DR L P R
Sbjct: 105 NDSELDGRKIIIREDREDFSLHDPRR 130
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 45/198 (22%)
Query: 46 LYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
LY+I ++V V+ V I D T + G A V + S +A++ ++ + R I
Sbjct: 28 LYEI--FNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTLNFTCIRSRPCRI 85
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
+ D RRN G VFV
Sbjct: 86 MWCLRDPASRRNNEGN-----------------------------------------VFV 104
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
NLD +D K L + F L G + + +IA D +G S G+G + F+HP A ++I+ LN
Sbjct: 105 KNLDKSIDNKTLFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMI 164
Query: 225 LFERRITV-RMDRVADRL 241
L +R I V + R A+R
Sbjct: 165 LGDRPIYVGKFQRKAERF 182
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G+ + ++ DD+GK RG V F+ + +KAV++M+ E G+ + + A ++
Sbjct: 215 GNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRA------QK 268
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 269 KVERQAELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAREFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
DE+KLR+VF G ++ + D GKSRGFG V F+ +A +++ +N + +
Sbjct: 203 DEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEM 256
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 223 Q 223
+
Sbjct: 356 R 356
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN------------------ 159
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +V
Sbjct: 160 -----------------GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + D+ GK +G V F+ + +KAV+++H + KG+KL + A + K
Sbjct: 247 FTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARA-QKK 305
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R A +KF G+N +++ N+
Sbjct: 306 SEREEE-----LRRSYEAAKNEKLAKF-------------QGVN------LYLKNIPESY 341
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LRE F G + + +I G SRGFG V + P EA +++S +N + L R +
Sbjct: 342 DDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLY 401
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 402 VALAQRKD 409
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+ N+D +V + + ++F GK+ + + D+DGKS+GFG V F+ EA +++ L+
Sbjct: 229 VYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288
Query: 222 N-----QNLFERRITVRMDR 236
+ Q LF R + +R
Sbjct: 289 DSDFKGQKLFVARAQKKSER 308
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D +GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 223 Q 223
+
Sbjct: 356 R 356
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N Y + N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTNVY---------------------IKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G++ V+++ D++G RG V F+ + +KAV+ M+ E G++L + A + + R+
Sbjct: 215 GNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRA-QKRAERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
N + R L Q+ +++ G+N ++V NLD + ++K
Sbjct: 274 N-----ELKRRFEQLKQDRQTRY-------------RGVN------LYVKNLDDSISDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR VF G + + ++ + D S+GFG V F P EA ++++ +N
Sbjct: 310 LRTVFSPYGVITSAKVMTEGD-HSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S VG + + + D T + G A + FQ P
Sbjct: 7 GYPLSSLYVGDLHPDVTEAMLYET--FSPVGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 -----------------VFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I +N L +R++ V
Sbjct: 143 VHFETNEAAQQAIGTMNGMLLNDRKVFV 170
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 37/202 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A+ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL +
Sbjct: 171 -------GHFKSQREREAELGAQALEFTNIY---------------------VKNLSVDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F G + +V++ D G SRGFG V F+ EA +++ +N + + +++
Sbjct: 203 DEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLY 262
Query: 232 V-RMDRVADRLDGPVRLPEGLK 252
V R + A+R + R E LK
Sbjct: 263 VGRAQKRAERQNELKRRFEQLK 284
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQ+ + +A+ +M+ K +L +
Sbjct: 212 TLYE--HFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFV 268
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A LQN ++F N Y V
Sbjct: 269 -------GRFKN-------RKDREAELQNKVNEFTNVY---------------------V 293
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L+EVF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 294 KNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKD 353
Query: 225 L 225
+
Sbjct: 354 V 354
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D GK +G V F S + +KAV +M+ + G+ L + A + K
Sbjct: 309 FSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRA-QKK 367
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +F G+ K+++ NLD
Sbjct: 368 SERQA---------ELKQMFEQLKQERFRRCQGM----------------KLYIKNLDDT 402
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KL F G + V+I + ++G+S+GFG + F P EA ++++ +N + L
Sbjct: 403 IDDEKLWREFSSFGSISRVKI-MREEGRSKGFGLICFSSPEEATKAMAEMNGRIL 456
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F + A ++I
Sbjct: 196 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIE 254
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
++L + LF R R DR A+
Sbjct: 255 EMNGALLKDCRLFVGRFKNRKDREAE 280
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD+G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLTRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + + A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQNAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREVELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE++L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + + R +
Sbjct: 203 DEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D+ G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A +IS +N L +R++ V
Sbjct: 143 VHFETHEAAQNAISTMNGMLLNDRKVFV 170
>gi|452823974|gb|EME30980.1| poly(A) binding protein isoform 1 [Galdieria sulphuraria]
Length = 222
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 37/192 (19%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
I HL +VG + +IL ++ G+ G AIVEF S + ++A+ ++ E GRK++I+E
Sbjct: 60 IQHLGSVGKIATSQILTNNLGRSVGGAIVEFDSEEAAKRAIETLNDSELDGRKIIIREDR 119
Query: 109 ED---KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
ED RR M G P+ L++ ++ V
Sbjct: 120 EDFSLHDPRRKMKQG------------------------DPRALQN--------RRIVVW 147
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEI--ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
NL V ++L+++F+ +G + E+ +DG GTV F+ +A +++ + +
Sbjct: 148 NLPSHVRWQELKDLFKESGNILWTEVRNVRARDGGETVMGTVLFESEEDARRAVERMRGK 207
Query: 224 NLFERRITVRMD 235
N R I R D
Sbjct: 208 NFLGRIIDCRFD 219
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 503 DSNRSMNQSS--NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK-------GKGD 553
D R M Q ++ +VV NLP + WQEL+D F+ G+I + E++ G+
Sbjct: 126 DPRRKMKQGDPRALQNRRIVVWNLPSHVRWQELKDLFKESGNILWTEVRNVRARDGGETV 185
Query: 554 IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
+G V F+SE A+RA++ M G+IID F
Sbjct: 186 MGTVLFESEEDARRAVERMRGKNFLGRIIDCRF 218
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VFV NL Y+ L + GK+ +I + G+S G VEFD A ++I L
Sbjct: 44 RVFVGNLAYRTTLDDLIQHLGSVGKIATSQILTNNLGRSVGGAIVEFDSEEAAKRAIETL 103
Query: 221 NNQNLFERRITVRMDRVADRLDGPVR 246
N+ L R+I +R DR L P R
Sbjct: 104 NDSELDGRKIIIREDREDFSLHDPRR 129
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + + + I
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|327308762|ref|XP_003239072.1| hypothetical protein TERG_08678 [Trichophyton rubrum CBS 118892]
gi|326459328|gb|EGD84781.1| hypothetical protein TERG_08678 [Trichophyton rubrum CBS 118892]
Length = 361
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
Q ++S+ + +V+V NL Y V L++ R AG+V ++ L +G S+G G VE
Sbjct: 37 QMMQSVRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVE 96
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVAD-RLDGP 244
+ +A Q+++ L+NQNL R + VR DR A+ R GP
Sbjct: 97 YATREQAQQAVATLSNQNLMGRLVYVREDREAEPRFTGP 135
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L E+F GKVE EI + +G+SRG G V+FD A +IS
Sbjct: 253 IYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEPNGRSRGTGVVQFDTADNAETAISKF 311
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D G +G V F D KAV ++ E KG+ L + A +
Sbjct: 253 FESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKN 312
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ DR L L + S +N +F+ NLD +
Sbjct: 313 ERVHELTKKYEADR-LEKLQKYQS-----------------------VN-LFIKNLDESI 347
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +L E F+ G + + ++ LD++GKSRGFG V P EA ++IS +N + + + +
Sbjct: 348 DDARLEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLY 407
Query: 232 VRM 234
V +
Sbjct: 408 VAL 410
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 48/204 (23%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S+ G V ++ D+ G +G V ++S + + A+ ++ GR++ +
Sbjct: 160 FSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV------- 212
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G +D + Q + N VFV N D +
Sbjct: 213 -------GPHLAKKDRESRFQEMIKNYTN---------------------VFVKNFDTES 244
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
E +LRE+F G + ++ + +D +G ++GFG V F +AV+++ LN++ L+
Sbjct: 245 TEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLY 304
Query: 227 ERRITVRMDRV--------ADRLD 242
R + +RV ADRL+
Sbjct: 305 VGRAQKKNERVHELTKKYEADRLE 328
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 48/231 (20%)
Query: 3 SPVTETELVEQIAHQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVTYVE 62
+P T TE E+ Q ET A L V +D ++ LY+ S +G V +
Sbjct: 29 TPATSTEAAEESNESST---QASETLASLYV-GELDPTVTESDLYEF--FSPIGSVNSIR 82
Query: 63 ILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGG 121
+ D T + G V F S +A+ +++ E KG + + + D RR+ G
Sbjct: 83 VCRDAVTKRSLGYGYVNFHSQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSGSGN- 141
Query: 122 GVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFR 181
+F+ NLD ++ K L + F
Sbjct: 142 ----------------------------------------IFIKNLDPAIENKTLHDTFS 161
Query: 182 LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
GKV + ++A D++G S+GFG V ++ A +I +N L R I V
Sbjct: 162 SFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV 212
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|299471941|emb|CBN79621.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 362
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL + + L F+ AG V + + + G+S+G+G V++ P E +++ LN
Sbjct: 287 VFVGNLAWGTTDDDLLATFQTAGAVVSAHVQIAPSGRSKGWGLVKYSSPTETETAVTELN 346
Query: 222 NQNLFERRITVRMDR 236
N L ERR+TVR+DR
Sbjct: 347 NTMLHERRLTVRLDR 361
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
VFV NL + + LR G+V + E+ D G+S+G+G V + P A +I L
Sbjct: 54 VFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQL 113
Query: 221 NNQNLFERRITVRMDR 236
NN +L R I +R+DR
Sbjct: 114 NNADLGGRPIHIRLDR 129
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 45/188 (23%)
Query: 50 SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ + ++G+V E+ + D+G+ +G +V + P + A+ +++ + GR + I+
Sbjct: 70 TFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRL-- 127
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
R+ + GG VFV NL
Sbjct: 128 ----DRKEVEASGGF-------------------------------------PVFVGNLP 146
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ ++ L+++F + + + + G+SRGFG + F P ++IS + N + R
Sbjct: 147 WSTTDEDLQQIF-APYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSR 205
Query: 229 RITVRMDR 236
I VR DR
Sbjct: 206 PIQVREDR 213
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G +T + + D GK +G V +++ + KAV +++ E G+K+ + A + R
Sbjct: 131 FGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRA---QKKR 187
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
M +L ++ + + Y G+N +FV NLD +D +
Sbjct: 188 ERM-------EELKKQYESTRVERLSKY---------QGVN------LFVKNLDDSIDSE 225
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL E F+ G + + ++ +D+ GKS+GFG V F P EA ++I+ +N + + + + V +
Sbjct: 226 KLEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVAL 285
Query: 235 DRVAD 239
+ D
Sbjct: 286 AQRKD 290
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N+D + +++ ++F G + ++ + D+DGKS+GFG V ++ AV+++ LN
Sbjct: 110 IYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELN 169
Query: 222 NQNLFERRITV-RMDRVADRLD 242
++ + ++I V R + +R++
Sbjct: 170 DKEINGQKIYVGRAQKKRERME 191
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+VT + D+ GK +G V F+ + + AV+ +H E G+KL + A + K
Sbjct: 257 FAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRA-QKK 315
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + + Q K G + +++ NL+ +
Sbjct: 316 AERE--------EELRKSYEQAKMEKLSKYQGAN----------------LYIKNLEDDM 351
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ KLR F G + + +I D+ G S+GFG V + P EA ++++ +NN+ L + +
Sbjct: 352 DDDKLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLY 411
Query: 232 V 232
V
Sbjct: 412 V 412
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD ++D K L + F G V + ++A D++G+SRGFG V +D A +I +N
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVN 205
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 206 GMLLNDKKVFV 216
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 50/202 (24%)
Query: 48 QISH------LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
QI H + G+V ++ D+ G+ RG V + + + A+ ++ +K
Sbjct: 154 QIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKK 213
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ + + K + A + S+F N Y
Sbjct: 214 VFVGHYISKK--------------ERQAHIDEQKSQFTNLY------------------- 240
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF-DHPVEAVQSI--- 217
V NLD +V + + ++F G+V + + D++GKS+GFG V F DH E+ Q+
Sbjct: 241 --VKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDH--ESAQAAVDA 296
Query: 218 ---SMLNNQNLFERRITVRMDR 236
+ LN + LF R + +R
Sbjct: 297 LHDTELNGKKLFVTRAQKKAER 318
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ DD+G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLTRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + + A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQNAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREVELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE++L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + + R +
Sbjct: 203 DEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLPPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D+ G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A +IS +N L +R++ V
Sbjct: 143 VHFETHEAAQNAISTMNGMLLNDRKVFV 170
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DDTG+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + G + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQGELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 58/260 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG 139
+A++ M+ KGR + I + D G R++ G G ++L + N + S FG
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKS-GVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 140 NT--------------YGLSPQFLESLG------INCPLIN--KVFVAN--------LDY 169
N YG + +N L+N KVFV + L+Y
Sbjct: 124 NILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY 183
Query: 170 -----------------KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVE 212
+D+K+LRE+F G +V++ +D G+SRGFG V + + E
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEE 243
Query: 213 AVQSISMLNNQNLFERRITV 232
A +++S +N + + R I V
Sbjct: 244 AQKAVSEMNGKEVNGRMIYV 263
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ K K+ +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L+N +S+F N Y +
Sbjct: 170 -------GRFKNR-------KDREAELRNKASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++LREVF GK +V++ D GKS+GFG V FD+ A +++ +N ++
Sbjct: 195 KNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 32/177 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F + + +KAV +M+ + G+ + + A V
Sbjct: 210 FSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKV 269
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K+++ NLD
Sbjct: 270 ERQAELKQM------------FEQQKRERIRKCQGV----------------KLYIKNLD 301
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR+ F G + V++ + ++G+S+GFG + F P EA ++++ +N Q L
Sbjct: 302 DTIDDEKLRKEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEEATKAMTEMNGQIL 357
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
+L + +F R R DR A+
Sbjct: 156 EMNGKLLKDCKVFVGRFKNRKDREAE 181
>gi|150866843|ref|XP_001386572.2| hypothetical protein PICST_25920 [Scheffersomyces stipitis CBS
6054]
gi|149388099|gb|ABN68543.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 424
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 13/217 (5%)
Query: 22 FQRIETGAPLEVPVVMDLIQGDASLYQISHL-STVGDVTYVEILNDDTGKPRGSAIVEFQ 80
F R +T + + + I D S + + D+ +I+ + G+ RG A VEF
Sbjct: 100 FYRTKTERNYDNSIFIGNIPFDCSARDVEDIFQNKFDIIKADIVTN-RGQSRGMATVEFS 158
Query: 81 SPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGN 140
+ + VR+A++ R E GR++ +++ +++ RD S + + +
Sbjct: 159 NKNAVREAISLFDRSEFNGRQIFVRQDYPPPDKKKDFSRREDSRRDDSRRDDSRNDSRRD 218
Query: 141 TYGLSPQFLESLGINCPLI-NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKS 199
Y P ++FV NL + V+ + L+++ R AG V ++ +D GKS
Sbjct: 219 DYERE----------APRPGTEIFVGNLPFSVNWQALKDLMRDAGSVVRADVRVDSWGKS 268
Query: 200 RGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
RGFGTV F+ P +A +++ M + + RRI R R
Sbjct: 269 RGFGTVVFETPEDAQKAVEMFSGYEIQGRRIDARPGR 305
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V ++ D GK RG V F++P+ +KAV +E +GR++ + +
Sbjct: 249 MRDAGSVVRADVRVDSWGKSRGFGTVVFETPEDAQKAVEMFSGYEIQGRRIDARPGRGEG 308
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ G DR S Q++ S+ + + +F E + + + +FVANL +
Sbjct: 309 NQHRD-----GYDR--STRDQDSYSR-DSAVSRNSEFTEGVTGDGEKSDTIFVANLPFAT 360
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
L E+F G+ EI ++ GK G V+F+ + +I L+N R I
Sbjct: 361 SNDDLYELFETVGRTTRAEIQYNEKGKPSGNAVVQFELLELSENAIQNLDNYTYGGRNIK 420
Query: 232 V 232
+
Sbjct: 421 I 421
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP ++ WQ L+D R+ G + A++ K +G G V F++ A++A++M
Sbjct: 231 IFVGNLPFSVNWQALKDLMRDAGSVVRADVRVDSWGKSRG-FGTVVFETPEDAQKAVEMF 289
Query: 573 DRTRIDGKIIDV 584
I G+ ID
Sbjct: 290 SGYEIQGRRIDA 301
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 46 LYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
LY++ TVG T EI ++ GKP G+A+V+F+ +L A+ + + GR + I
Sbjct: 365 LYEL--FETVGRTTRAEIQYNEKGKPSGNAVVQFELLELSENAIQNLDNYTYGGRNIKIT 422
Query: 106 EA 107
A
Sbjct: 423 YA 424
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+ +L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 203 DDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 26/169 (15%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG V+++ D+ GK +G V F+ + +KAV++M+ E GR + + A + K R
Sbjct: 215 VGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRA-QKKAER 273
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + R L Q SK+ G+N ++V NLD ++++
Sbjct: 274 QT-----ELKRKFEMLKQERMSKYQ-------------GVN------LYVKNLDDNINDE 309
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
+L + F G + + ++ ++ +G+SRGFG V F P EA ++++ +N +
Sbjct: 310 RLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGR 357
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 38/191 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAEFGAKAREFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVF-RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
D+++LRE F + GK +V++ +D+ GKS+GFG V F+ +A +++ +N + L R I
Sbjct: 203 DDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAI 262
Query: 231 TV-RMDRVADR 240
V R + A+R
Sbjct: 263 YVGRAQKKAER 273
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR S GN
Sbjct: 82 IRIMWSQRDPSLRR--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+++L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 203 DDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V ++ + KAV +M+ E G+ + + A
Sbjct: 211 FSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+++F GK +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|393213816|gb|EJC99311.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 258
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F NL Y+V + L+++FR AG V +++L D +SRG+GTV +A +++ M
Sbjct: 72 QLFAGNLPYRVRWQDLKDLFRRAGTVLRADVSLSPDNRSRGYGTVLLASAEDAGRAVDMF 131
Query: 221 NNQNLFERRITVRMDRV-----ADRLDGPVRLPEGLKSIGMGLGAN 261
N N R + VR+DR+ AD P + G G+ +G N
Sbjct: 132 NGYNWQGRVLEVRLDRLGAVPGADMDANPAAIIPGAPLPGLPIGVN 177
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+L + + L+++FR AG + +++L DG+SRGFGTV + + ++A ++++M N L
Sbjct: 197 HLPFHCQWQDLKDLFRQAGTILRADVSLGPDGRSRGFGTVTYANEIDAERAVAMFNGYAL 256
Query: 226 F 226
Sbjct: 257 L 257
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAID 570
R + NLP + WQ+L+D FR G + A++ D G V S A RA+D
Sbjct: 70 RTQLFAGNLPYRVRWQDLKDLFRRAGTVLRADVSLSPDNRSRGYGTVLLASAEDAGRAVD 129
Query: 571 MMDRTRIDGKIIDV 584
M + G++++V
Sbjct: 130 MFNGYNWQGRVLEV 143
>gi|115313305|gb|AAI24098.1| Myef2 protein [Danio rerio]
gi|197246963|gb|AAI64131.1| Myef2 protein [Danio rerio]
Length = 327
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NL ++WQ+L++KF +CG + +AEIK GK G VRFDS +A++A +M+
Sbjct: 252 IFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKMENGKSKGCGTVRFDSPESAEKACRLMNG 311
Query: 575 TRIDGKIIDV 584
T+I+G+ +DV
Sbjct: 312 TKINGREVDV 321
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y + +KL+E F G+V EI ++ +GKS+G GTV FD P A ++ ++
Sbjct: 251 QIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACRLM 309
Query: 221 NNQNLFERRITVRMDRVA 238
N + R + VR+DR A
Sbjct: 310 NGTKINGREVDVRLDRNA 327
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+ +L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 203 DDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D TGK +G V F S + +KAV +M+ + G+ L + A + K
Sbjct: 210 FSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRA-QKK 268
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +F G+ K+++ NLD
Sbjct: 269 AERQA---------ELKQMFEQQKQERFRRCQGV----------------KLYIKNLDDT 303
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F P EA ++++ +N + L
Sbjct: 304 IDDEKLRREFSSFGSISRVKV-MKEEGRSKGFGLICFSSPEEATRAMTEMNGRIL 357
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQ+ +A+ +M+ K +L +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A LQN +++F N Y +
Sbjct: 170 -------GRFKNR-------QDREAELQNKANEFTNIY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+K+L EVF GK +V++ D GKS+GFG V F A +++ +N ++
Sbjct: 195 KNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F + + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIE 155
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
++L + LF R R DR A+
Sbjct: 156 EMNGALLKDCRLFVGRFKNRQDREAE 181
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
I C +K+F+ L Y D+ LRE F G+V + +D++ G+SRGFG V F E
Sbjct: 34 IRCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEE 93
Query: 213 AVQSISMLNNQNLFERRITVRMDRVADR 240
A +I L+ Q+L RR VR++ DR
Sbjct: 94 ASSAIQALDGQDLHGRR--VRVNYATDR 119
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 25/215 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++T ++ D GKP+G V F D +AV K++ +G + K
Sbjct: 258 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 317
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R AL Q ++ G+N ++V N++ +
Sbjct: 318 KSERS----AELKRKYEALKQERVQRYQ-------------GVN------LYVKNIEEDL 354
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ LR+ F G + + ++ +D++G+S+GFG V F+ P EA +++ +N++ + + +
Sbjct: 355 NDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY 414
Query: 232 VRMDRVAD--RLDGPVRLPEGLKSIGMGLGANGAP 264
V + + + R + + L ++ MG A+G P
Sbjct: 415 VALAQRKEDRRAQLASQYMQRLATLRMGQQASGVP 449
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGK-PRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S G V + + D+T + G A V FQ P +A++ M+ GR
Sbjct: 70 EAMLFE--KFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRP 127
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR G
Sbjct: 128 MRIMWSQRDPAARRAGNG-----------------------------------------N 146
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F L G + + ++A D +G S+G+G V F+ A +I +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 207 GMLLSDKKVYV 217
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V ++ +AV ++ E G+K+ + A + +
Sbjct: 262 FAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKR 321
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + A+ SK+ G+N +FV NLD ++
Sbjct: 322 ERTEEL------KKQYEAIRLEKLSKY-------------QGVN------LFVKNLDDQI 356
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +KL E F+ G + + ++ +D GKSRGFG V F P EA ++I+ +N +
Sbjct: 357 DSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQR 408
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N+D + EK+ ++F GK+ ++ + D+DGKS+GFG V ++ AV+++ LN
Sbjct: 244 IYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALN 303
Query: 222 NQNLFERRITV 232
++ + ++I V
Sbjct: 304 DKEINGQKIYV 314
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 100/195 (51%), Gaps = 20/195 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K+++K++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK-----VFVAN 166
+ +G + + L N K + L +F E L I +N+ ++V N
Sbjct: 179 EREKELG-------EKAKLFTNVYVK---NFELKRKF-EQLKIE--RLNRYQGVNLYVKN 225
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
LD +D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + +
Sbjct: 226 LDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVG 284
Query: 227 ERRITVRM-DRVADR 240
+ + V + R DR
Sbjct: 285 SKPLYVALAQRKEDR 299
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D TGK RG V ++ + KAV M+ E G+ + + A + K R+
Sbjct: 215 GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRA-QKKNERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R L Q S++ G+N +++ NLD +D++K
Sbjct: 274 -----AELKRKFEMLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLF 226
D+++L+E+F GK +V++ +D GKSRGFG V ++ +A +++ + LN + +F
Sbjct: 203 DDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVF 262
Query: 227 ERRITVRMDRVAD 239
R + +R A+
Sbjct: 263 VGRAQKKNERQAE 275
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 34/220 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
S G + ++ +D K +G V F++P+ AV +M+ ++ G+KL + A +
Sbjct: 186 FSKFGKIQSCVVMKED-DKSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRA-QK 243
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ + R L ++ G+N +++ NLD
Sbjct: 244 KAERQ-----AELKRRYEMLKLERIQQYE-------------GVN------LYLKNLDDS 279
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
VD+ +LR+ F G + + ++ D+ G+S+GFG V F P EA +++S +NNQ L + +
Sbjct: 280 VDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPL 339
Query: 231 TVRM-----DRVADRLDGPVRLPEGLK--SIGMGLGANGA 263
V + DR A V+ L+ ++GMG +G+
Sbjct: 340 YVALAQRKEDRKAQLASQLVQRVNALRFQTVGMGQMYSGS 379
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S G V + + D T + G A V +Q +A++ M+ GR
Sbjct: 25 EAMLFE--KFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALDTMNFDPVFGRP 82
Query: 102 LVIKEAVEDKGGRRNMGGGGGV-----DRDL-SALLQNNSSKFGNT-------------- 141
+ I + D RR+ G G V D+D+ + + S FGN
Sbjct: 83 IRIMWSQRDPSLRRS--GVGNVFIKNLDKDIDHKAIYDTFSNFGNILSCKVATDENGVSK 140
Query: 142 -YGLSPQF------LESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD 194
YG +F + +G V+V N D ++ L ++F GK+++ + +
Sbjct: 141 GYGYVGKFIPRAQRMREIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSC-VVMK 199
Query: 195 KDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D KS+GFG V F++P +A ++ +N L
Sbjct: 200 EDDKSKGFGFVSFENPEDAEAAVKEMNEYQL 230
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D +G RG V F++ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRMNRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPYGMITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 58/261 (22%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S VG + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHADVTEALLYE--KFSPVGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKF 138
+A++ M+ KG+ + I + D G R++ G G ++L A + N + S F
Sbjct: 64 DAERALDTMNFEMIKGQPIRIMWSQRDPGLRKS-GVGNIFIKNLEASIDNKALYDTFSTF 122
Query: 139 GN------------TYGLSPQFLES----------------------------------- 151
GN + G E+
Sbjct: 123 GNILSCKVACDEHGSRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVE 182
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
LG ++V NL VDE+ L+E+F GK+ +V++ D G SRGFG V F+
Sbjct: 183 LGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHE 242
Query: 212 EAVQSISMLNNQNLFERRITV 232
EA +++ +N + + R + V
Sbjct: 243 EAQKAVVHMNGKEVSGRLLYV 263
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 90/179 (50%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I G + ++ DD+GK +G V F+ + ++AV++M+ E G+++
Sbjct: 204 DEKLKEI--FCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQV 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A + KG R+ + R + Q+ +++ G+N +
Sbjct: 262 YVGRA-QKKGERQT-----ELKRKFEQMKQDRMTRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ + K
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
MG + +F N V++ N +
Sbjct: 178 EREAEMGA--------------RAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+E+F G ++ + D GKS+GFG V F+ +A +++ +N + + +++
Sbjct: 203 DDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D TGK RG V ++ + KAV M+ E G+ + + A + K R+
Sbjct: 215 GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRA-QKKNERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R L Q S++ G+N +++ NLD +D++K
Sbjct: 274 -----AELKRKFEMLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLF 226
D+++L+E+F GK +V++ +D GKSRGFG V ++ +A +++ + LN + +F
Sbjct: 203 DDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVF 262
Query: 227 ERRITVRMDRVAD 239
R + +R A+
Sbjct: 263 VGRAQKKNERQAE 275
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF------DHPVE 212
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F D +E
Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 156
Query: 213 AVQSISMLNNQNLFERRITVRMDRVAD 239
+ + +LN++ +F R R +R A+
Sbjct: 157 KMNGM-LLNDRKVFVGRFKSRKEREAE 182
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + KAV +M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+ +L+E+F GK +V++ D GKS+GFG V F+ +A +++ +N +++ F
Sbjct: 203 DDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 29/194 (14%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G++T + D+ GK RG V +++ + +AVN+MH E KG+ L + A + K R+
Sbjct: 358 GNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRA-QKKSERQ 416
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R A Q +K+ G+N ++V NLD VD+ K
Sbjct: 417 SE-----LARSHEAAKQERQNKYA-------------GVN------LYVKNLDDDVDDDK 452
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV--- 232
LR F G + + ++ ++ S+GFG V F P EA ++++ +NN+ + + + V
Sbjct: 453 LRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLA 512
Query: 233 -RMDRVADRLDGPV 245
R D +L+G +
Sbjct: 513 QRRDVRRQQLEGQI 526
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+TGK RG V +++ + A+ ++R +++ + + K
Sbjct: 261 FAAFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRK 320
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + + ++F N Y V NLD +
Sbjct: 321 --------------ERQSQIDEARAQFTNIY---------------------VKNLDTDI 345
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
E + R +F G + + + D +GKSRGFG V +++ EA ++++ ++ + +
Sbjct: 346 TEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEI 399
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G V + ++A D+ GKSRG+G V ++ A +I +N
Sbjct: 243 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVN 302
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 303 RMLLNDKQVFV 313
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + DD GK +G V F+ + +KAV+++H + G+KL + A + K
Sbjct: 245 FTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLFVARA-QKK 303
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R A +KF G+N +++ N+
Sbjct: 304 SEREEE-----LRRSYEAAKNEKLAKF-------------QGVN------LYLKNIPESY 339
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LRE F G + + +I G SRGFG V + P EA +++S +N + L R +
Sbjct: 340 DDERLREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLY 399
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 400 VALAQRKD 407
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+ N+D +V +++ ++F GK+ + + D DGKS+GFG V F+ EA +++ L+
Sbjct: 227 VYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELH 286
Query: 222 NQNLFERRITV-RMDRVADR 240
+ + +++ V R + ++R
Sbjct: 287 DSDFHGQKLFVARAQKKSER 306
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQ+ +A+ +M+ K +L +
Sbjct: 212 TLYE--HFSAFGKILSSKVMSDDQGS-RGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV 268
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L+N +++F N Y +
Sbjct: 269 -------GRFKNR-------KDREAELRNKANEFTNVY---------------------I 293
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L+EVF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 294 KNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKD 353
Query: 225 L 225
+
Sbjct: 354 I 354
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ L + A + K
Sbjct: 309 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRA-QKK 367
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +F G+ K+++ NLD
Sbjct: 368 SERQA---------ELKQVFEQLKQERFRRCQGM----------------KLYIKNLDDT 402
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KL F G + V+I + ++G+S+GFG + F P EA ++++ +N + L
Sbjct: 403 IDDEKLWREFSSFGSISRVKI-MREEGRSKGFGLICFSSPEEATKAMAEMNGRIL 456
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F + + A ++I
Sbjct: 196 IGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIE 254
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
++L + LF R R DR A+
Sbjct: 255 EMNGALLKDCRLFVGRFKNRKDREAE 280
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 26/168 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++G +G V F+ + +KAV +M+ E G+K+ + A + KG R+
Sbjct: 284 GPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRA-QKKGERQ 342
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R L Q+ +++ G+N ++V NLD +D+++
Sbjct: 343 T-----ELKRKFEQLKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 378
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 379 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 425
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ D +A++KM+ RK+ +
Sbjct: 188 FSAFGNILSCKVVCDEHGS-KGYGFVHFETRDAAERAIDKMNGMLLNDRKVFV------- 239
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 240 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 271
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +L+ +F G +V++ D+ G S+GFG V F+ +A +++ +N + L ++I
Sbjct: 272 DDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIY 331
Query: 232 V 232
V
Sbjct: 332 V 332
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D+ G S+G+G V F+ A ++I
Sbjct: 167 VGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAID 225
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 226 KMNGMLLNDRKVFVGRFKSRKEREAE 251
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQ+ +A+ +M+ K +L +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A LQN +++F N Y +
Sbjct: 170 -------GRFKNR-------KDREAELQNKANEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L+EVF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ L + A + K
Sbjct: 210 FSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRA-QKK 268
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +F G+ K+++ NLD
Sbjct: 269 AERQA---------ELKQMFEQLKRERFRRCQGV----------------KLYIKNLDET 303
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F P EA ++++ +N + L
Sbjct: 304 IDDEKLRREFSSFGSISRVKV-MQEEGRSKGFGLICFSSPEEATKAMTEMNGRIL 357
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F + + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIE 155
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
++L + LF R R DR A+
Sbjct: 156 EMNGALLKDCRLFVGRFKNRKDREAE 181
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQ+ +A+ +M+ K +L +
Sbjct: 108 TLYE--HFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFV 164
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +D A QN + +F N Y +
Sbjct: 165 --------------GRFKSRKDREAEFQNKAHEFTNVY---------------------I 189
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N ++D+++L+EVF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 190 KNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKD 249
Query: 225 L 225
+
Sbjct: 250 I 250
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + ++AV +M+ + G+ L + A + K
Sbjct: 205 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRA-QKK 263
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +F G K+++ NLD
Sbjct: 264 AERQA---------ELKQMFEQLKHERFRRCRG----------------AKLYIKNLDET 298
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F EA ++++ +N + L
Sbjct: 299 IDDEKLRREFSSFGSISRVKV-MQEEGRSKGFGLICFSSAEEATKAMTEMNGRIL 352
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F + + A ++I
Sbjct: 92 IGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIE 150
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
++L + LF R R DR A+
Sbjct: 151 EMNGTLLKDCRLFVGRFKSRKDREAE 176
>gi|307105122|gb|EFN53373.1| hypothetical protein CHLNCDRAFT_32263 [Chlorella variabilis]
Length = 220
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 3/187 (1%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G+V Y ++ D++G+ +G IVEF++P+ A+N ++ E GR ++++E ED+ +
Sbjct: 34 CGNVVYSNVIKDESGRSKGWGIVEFETPEEALTAINTLNGVELGGRTILVREDREDRDVK 93
Query: 115 RNMG---GGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ G G G P+ E +N ++ V L +
Sbjct: 94 QENGITPPVRPPREPREPRAPAPGRGRGRGRGPPPEGAEGEEVNQSSGLQIVVNGLPWAW 153
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
K+L+++ G + ++ +DG+SRG+GTV ++ EA +I N +L R ++
Sbjct: 154 TWKELKDLMAGTGNIVRADVVYGRDGRSRGYGTVRYETAEEAEAAIEQFNGSDLEGRTLS 213
Query: 232 VRMDRVA 238
VR+D+ A
Sbjct: 214 VRLDKYA 220
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V+NL ++ + L++ FR G V + D+ G+S+G+G VEF+ P EA+ +I+ L
Sbjct: 12 RVYVSNLAWRTSWQDLKDKFRECGNVVYSNVIKDESGRSKGWGIVEFETPEEALTAINTL 71
Query: 221 NNQNLFERRITVRMDR 236
N L R I VR DR
Sbjct: 72 NGVELGGRTILVREDR 87
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NL +WQ+L+DKFR CG++ ++ + + KG G+V F++ A AI+ +
Sbjct: 13 VYVSNLAWRTSWQDLKDKFRECGNVVYSNVIKDESGRSKG-WGIVEFETPEEALTAINTL 71
Query: 573 DRTRIDGKIIDV 584
+ + G+ I V
Sbjct: 72 NGVELGGRTILV 83
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 171 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 228 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 252
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N ++D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 253 KNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 312
Query: 225 L 225
+
Sbjct: 313 I 313
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A V
Sbjct: 268 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K+++ NLD
Sbjct: 328 ERQAELKQM------------FEQLKRERIRGCQGV----------------KLYIKNLD 359
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 360 DTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAE 239
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 41/180 (22%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + + D GK RG + F++ D KAV +++ E KG+KL + A
Sbjct: 251 FSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRA---- 306
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF----LESL----GINCPLINKVF 163
K+ L Q+ LE L G+N +F
Sbjct: 307 -----------------------QKKYERLQELKKQYEASRLEKLAKYQGVN------LF 337
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V NLD +D++KL F G + + ++ +++GKS+ FG V F P EA ++I+ N Q
Sbjct: 338 VKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQ 397
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 49/200 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY I S +G VT + + D K G A V F + R A+ K++ KG+
Sbjct: 63 EALLYDI--FSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLNYSPIKGKP 120
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D R+ G
Sbjct: 121 CRIMWSQRDPALRKKGAGN----------------------------------------- 139
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDH---PVEAVQSIS 218
+F+ NL +D K L + F + G + + +IA D+ GKS+GFG V F+ VEAV +I+
Sbjct: 140 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAIN 199
Query: 219 --MLNNQNLFERRITVRMDR 236
MLN + ++ + + DR
Sbjct: 200 GMMLNGREVYVAQHVSKKDR 219
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I D+TGK +G V F+ + +AV+ ++ GR++ + + V K
Sbjct: 158 FSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKK 217
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L+ + F N V+V N+D
Sbjct: 218 --------------DRESKLEEVKANFTN---------------------VYVKNVDVDT 242
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
E + +F G + ++ + D +GK RGFG + F++ +A +++ LN+ Q L+
Sbjct: 243 PEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLY 302
Query: 227 ERRITVRMDRVAD 239
R + +R+ +
Sbjct: 303 VGRAQKKYERLQE 315
>gi|195035923|ref|XP_001989421.1| GH10062 [Drosophila grimshawi]
gi|193905421|gb|EDW04288.1| GH10062 [Drosophila grimshawi]
Length = 251
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I +F NLD +V E+ L EVF AG +ENV I LD G+ R FG V + H ++
Sbjct: 75 IRTLFCNNLDERVSEEILYEVFLQAGPIENVRIPLDNAGRQRNFGFVTYQHKSAVPYAVD 134
Query: 219 MLNNQNLFERRITVRMDRV 237
+ LF++++T+R V
Sbjct: 135 LYQGLELFQKKLTIRQQCV 153
>gi|164658872|ref|XP_001730561.1| hypothetical protein MGL_2357 [Malassezia globosa CBS 7966]
gi|159104457|gb|EDP43347.1| hypothetical protein MGL_2357 [Malassezia globosa CBS 7966]
Length = 461
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG ++ ++AL+ DG+SRGFGTV F P +A ++ + +
Sbjct: 387 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVALNADGRSRGFGTVLFASPEDAQTAVRLYH 446
Query: 222 NQNLFERRITVRMDR 236
R + V DR
Sbjct: 447 GYEYSGRILKVHFDR 461
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKG------KGDIGLVRFDSEWTAKRA 568
+R + V+NLPP + WQ+L+D FR G + A++ D G V F +E A A
Sbjct: 195 QRTQLYVRNLPPQVRWQDLKDLFRRAGTVLRADVHNMLHDPRYVDSGTVLFATEADAHYA 254
Query: 569 IDMMDRTRIDGKIIDVTF 586
I ++ G ++DVT
Sbjct: 255 IQILHGYNWHGHVLDVTL 272
>gi|389747681|gb|EIM88859.1| hypothetical protein STEHIDRAFT_52958 [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A +++ M
Sbjct: 8 TQLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDNRSRGYGTVLLASAEDAGRAVDM 67
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIG 255
N + R + VR+DR+ L V P G+ S G
Sbjct: 68 FNGYSWQTRVLEVRLDRLPPELGLGVGEPPGVGSAG 103
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ + L+++FR AG + ++AL +DG+SRGFGTV F ++A +++ M N
Sbjct: 156 FHCQWQDLKDLFRQAGTILRADVALGQDGRSRGFGTVVFATDMDAERAVKMFN 208
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
GDV VE++ D TG+ RG V S + V A + + +E GR L +
Sbjct: 119 FERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAP 178
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+ G +NSS G G S ++S N+V+V NL +
Sbjct: 179 PKRENSFG--------------DNSSYQGGRGGGS---MDS-------SNRVYVGNLAWS 214
Query: 171 VDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
VD+++L +F GKV + ++ D+D G+SRGFG V + E +I L+ +L R
Sbjct: 215 VDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRA 274
Query: 230 ITV 232
I V
Sbjct: 275 IRV 277
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTV 205
K+FV NL + VD L E+F AG VE VE+ DK G+SRGFG V
Sbjct: 100 KIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFV 145
>gi|299742217|ref|XP_001832319.2| hypothetical protein CC1G_07706 [Coprinopsis cinerea okayama7#130]
gi|298405084|gb|EAU89480.2| hypothetical protein CC1G_07706 [Coprinopsis cinerea okayama7#130]
Length = 1711
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I M N
Sbjct: 297 LFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGRAIDMFN 356
Query: 222 NQNLFERRITVRMDRV 237
+ R + VR+DRV
Sbjct: 357 GYDWQTRILEVRVDRV 372
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 497 NPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD--- 553
N G +R M + R + V NLP + WQ+L+D FR G + A++ D
Sbjct: 275 NSEGGGSRDRDMRVPARDTRTLLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRS 334
Query: 554 --IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
G V + A RAIDM + +I++V
Sbjct: 335 RGYGTVLLATAEDAGRAIDMFNGYDWQTRILEV 367
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 45/126 (35%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFR--------LAGK----------------------- 185
P +FV NL Y V + L+++FR L GK
Sbjct: 490 PPGRTLFVGNLPYHVQWQDLKDLFRRVPSSHPILQGKGNTSFGSSTLSLHGQGSGLSSEA 549
Query: 186 --------------VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
V ++AL DG+S+GFGTV F EA ++ + N R++
Sbjct: 550 AELGHIPPSLLTFNVLRADVALGPDGRSKGFGTVVFSSIEEAERARRVFNGYEFNGRQLK 609
Query: 232 VRMDRV 237
V DR+
Sbjct: 610 VHYDRL 615
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 32/193 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S+ G +T ++ D GK RG V FQSPD AV K++ + + A + K
Sbjct: 232 FSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRA-QRK 290
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G R + +L A Q +S++ + +++ NL
Sbjct: 291 GER---------EAELKAKFEQERNSRYEKMKAAN----------------LYLKNLGDT 325
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+DE++L+E+F G + + ++ LD+ G S+G G V F P EA +++S +N + + ++ +
Sbjct: 326 IDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPL 385
Query: 231 TV-----RMDRVA 238
V R +R+A
Sbjct: 386 YVAIAQRREERMA 398
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD K+D K L E F G V + ++A+D +G+S+G+G ++F++ +A +I+ LN
Sbjct: 123 VFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLN 182
Query: 222 NQNLFERRITV-----RMDRV 237
+ +R + V R++R+
Sbjct: 183 GMLVNDREVYVGPFVRRLERI 203
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 40/199 (20%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ +LY+ ++ G V ++ D+ G+ +G ++F++ + + A+N+++ R++
Sbjct: 134 NKALYET--FASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREV 191
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ G R L + N S KF N V
Sbjct: 192 YV----------------GPFVRRLERIEANGSPKFTN---------------------V 214
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NL ++ L+++F G + + + D++GKSRGFG V F P A ++ LN
Sbjct: 215 YVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNG 274
Query: 223 QNLFERRITV-RMDRVADR 240
++ V R R +R
Sbjct: 275 MTFSDKVWYVGRAQRKGER 293
>gi|388853588|emb|CCF52760.1| uncharacterized protein [Ustilago hordei]
Length = 1375
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG ++ ++A+ DG+SRGFGTV F +A ++ + +
Sbjct: 629 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 688
Query: 222 NQNLFERRITVRMDRVA 238
R + V DR A
Sbjct: 689 GYEYSGRTLKVHFDRFA 705
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V+NL Y+V + L+++FR AG V +++L D +SRG+GTV +A+++ ML
Sbjct: 308 QLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAADML 367
Query: 221 NNQNLFERRITVRMDRVADRLD--GPVRLPEGLKSIGMGLGANGAPLQ 266
R + VR+DR + G +P L + G+G GA+ +P+
Sbjct: 368 CGFTWQGRTLDVRVDRSGTLVGVAGSAVMPT-LATNGLGNGASPSPIH 414
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 35/180 (19%)
Query: 415 SQSGLGQSNILSGMAAYSQGMQSQTSSLSSGNNV--YSNQSAPSTDYSRNASN-MYGNSR 471
SQ+GL + G ++S G S T++L S ++ YS + P+ D ASN + GN
Sbjct: 225 SQAGLAGARPPFGRQSFSDGPSSSTTNLLSADSATFYSGNNYPTGD----ASNPLSGN-- 278
Query: 472 YGSGGNEMDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQ--SSNIERDTVVVKNLPPTIT 529
Q+ G +P +GL + S++ R ++V NLP +
Sbjct: 279 -------------------QASGNFDPTSGLAAPAPSTGPLSASDPRTQLLVSNLPYRVR 319
Query: 530 WQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
WQ+L+D FR G + A++ D G V +E A +A DM+ G+ +DV
Sbjct: 320 WQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAADMLCGFTWQGRTLDV 379
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 493 GGYGNPR-AGLDS---NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI 548
G GNP A + S N M +S R + V NLP WQ+L+D FR G+I+ A++
Sbjct: 600 GALGNPAMASMQSQPFNSQMPTTSYAGR-VLFVGNLPFHCQWQDLKDLFRAAGNIQRADV 658
Query: 549 KGKGD-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586
D G V F S+ A+ A+ + G+ + V F
Sbjct: 659 AIGPDGRSRGFGTVLFASQEDAQNAVRLYHGYEYSGRTLKVHF 701
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 39/186 (20%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + +I + D G+ +G V F++ + A+ K++ + G+K+ + + V+
Sbjct: 150 GPILSCKIAHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRS---- 204
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
DR L +KF N VFV NLD ++ E++
Sbjct: 205 --------DR----LAATGETKFTN---------------------VFVKNLDPEMAEEE 231
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RM 234
++E F G + NV I D++ KS+GFG V FD P A ++ +NN L R I V R
Sbjct: 232 IKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRA 291
Query: 235 DRVADR 240
+ A+R
Sbjct: 292 QKKAER 297
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H ST G +T V I+ D+ K +G V F P+ R AV M+ + R + + A +
Sbjct: 235 HFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRA-QK 293
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R + L + + QF + G N ++V NLD
Sbjct: 294 KAEREQI---------LRRQFEEKRME---------QFQKYQGAN------LYVKNLDDS 329
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D++ L++ F G + + ++ D+ G S+GFG V F P EA ++ + N + + I
Sbjct: 330 IDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPI 389
Query: 231 TVRM 234
V M
Sbjct: 390 YVAM 393
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + +IA +DG+S+G+G V F+ A +I
Sbjct: 125 VGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFVHFETDEAANLAIE 183
Query: 219 MLNNQNLFERRITV-----RMDRVA 238
+N L +++ V R DR+A
Sbjct: 184 KVNGMQLVGKKVFVAKFVKRSDRLA 208
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D+ G RG V F+ + +KAV M+ E GR+L + A + +
Sbjct: 211 FSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRKFEQMKQDRLNRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + ++A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQQAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L+ + +F N Y V NL +
Sbjct: 171 -------GHFKSRREREAELRARAMEFTNIY---------------------VKNLQVDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D +G SRGFG V F+ EA +++ +N + + R++
Sbjct: 203 DEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++ D+ G SRGFG V F+ A Q+IS
Sbjct: 98 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAIS 156
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 157 TMNGMLLNDRKVFV 170
>gi|71014136|ref|XP_758699.1| hypothetical protein UM02552.1 [Ustilago maydis 521]
gi|46098364|gb|EAK83597.1| hypothetical protein UM02552.1 [Ustilago maydis 521]
Length = 1336
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG ++ ++A+ DG+SRGFGTV F +A ++ + +
Sbjct: 634 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 693
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
R + V DR A + +GP
Sbjct: 694 GYEYSGRTLKVHFDRFAAQ-NGPA 716
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V+NL Y+V + L+++FR AG V +++L D +SRG+GTV +A+++ +L
Sbjct: 302 QLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAADLL 361
Query: 221 NNQNLFERRITVRMDR 236
R + VR+DR
Sbjct: 362 GGFTWQGRTLDVRVDR 377
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 487 QASIQSGGYGNPRAGLDSNRSMNQ---SSNIERDTVVVKNLPPTITWQELRDKFRNCGDI 543
AS + G +P++G+++ + S++ R ++V NLP + WQ+L+D FR G +
Sbjct: 268 HASASAAGLYDPQSGINTPPAPTTGPLSASDPRTQLLVSNLPYRVRWQDLKDLFRKAGTV 327
Query: 544 KFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
A++ D G V +E A +A D++ G+ +DV
Sbjct: 328 LRADVSLSADNRSRGYGTVLMATEQDAIKAADLLGGFTWQGRTLDV 373
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 25/215 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++T ++ D GKP+G V F D +AV K++ +G + K
Sbjct: 141 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 200
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R AL Q ++ G+N ++V N++ +
Sbjct: 201 KSERS----AELKRKYEALKQERVQRY-------------QGVN------LYVKNIEEDL 237
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ LR+ F G + + ++ +D++G+S+GFG V F+ P EA +++ +N++ + + +
Sbjct: 238 NDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY 297
Query: 232 VRMDRVAD--RLDGPVRLPEGLKSIGMGLGANGAP 264
V + + + R + + L ++ MG A+G P
Sbjct: 298 VALAQRKEDRRAQLASQYMQRLATLRMGQQASGVP 332
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K + + F L G + + ++A D +G S+G+G V F+ A +I +N
Sbjct: 30 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 89
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 90 GMLLSDKKVYV 100
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 37/189 (19%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D + + S+Y S G++ ++ DD G +G V F++ + A+ K
Sbjct: 35 LDRVIDNKSVYDT--FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK----- 87
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
++ +L ++ + + Q ++ LG +
Sbjct: 88 ------------------------------VNGMLLSDKKVYVGKFQPRAQRMKELGESG 117
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
VFV N +D++KL +F G++ + + D GK +GFG V F A Q+
Sbjct: 118 LKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQA 177
Query: 217 ISMLNNQNL 225
+ LN+ L
Sbjct: 178 VEKLNDSIL 186
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
V VT V + D GK RG V +++ KAV +++ E G++L + A +
Sbjct: 242 FKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKK- 300
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R Q SK G+N +F+ NLD +
Sbjct: 301 -----------YERQQELRRQYEQSKLEKMEKYQ-------GVN------LFIKNLDDSI 336
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LRE F G + +V++ ++GKS+GFG V F P EA ++I+ N Q
Sbjct: 337 DDERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQ 388
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 36/182 (19%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S G++ +I D+ TG +G V F+S + R+A++ ++ G+++ + V
Sbjct: 148 FSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSR 207
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K D + L+ + F N V++ N+ +
Sbjct: 208 K--------------DRQSKLEEAKANFTN---------------------VYIKNISLE 232
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
E++ E F+ V +V + D +GK RGFG V ++ A +++ LN +++
Sbjct: 233 TPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQL 292
Query: 231 TV 232
V
Sbjct: 293 HV 294
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 50/221 (22%)
Query: 23 QRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQS 81
Q++ET +D +A LY I S +G V+ + + D K G A V F
Sbjct: 33 QKVETSTASLYVGELDPTVSEALLYDI--FSPIGSVSSIRVCRDAITKTSLGYAYVNFND 90
Query: 82 PDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNT 141
+ R+A+ K++ KG+ I + D R+ G
Sbjct: 91 YEAGRQAIEKLNYTPIKGQPCRIMWSQRDPSLRKKGSGN--------------------- 129
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSR 200
+F+ NL +D K L + F + G + + +IA D+ G S+
Sbjct: 130 --------------------IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSK 169
Query: 201 GFGTVEFDH---PVEAVQSIS--MLNNQNLFERRITVRMDR 236
GFG V F+ EA+ +I+ +LN Q ++ R DR
Sbjct: 170 GFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDR 210
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T + + D GK +G V F+S + KAV +++ + G+ L + A + +
Sbjct: 251 FEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKR 310
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ R SK+ G+N +FV NLD +
Sbjct: 311 ERIEEL------KRQYETARLEKLSKYQ-------------GVN------LFVKNLDDSI 345
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D KL E F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + + +
Sbjct: 346 DSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLY 405
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 406 VALAQRKD 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D+ G + V +++ + R A+ ++ R++ + + V K
Sbjct: 158 FSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKK 217
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ SKF E + N V+V N+D
Sbjct: 218 ------------DRE---------SKF-----------EEMKAN---FTNVYVKNIDLGF 242
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
E+++R +F GK+ ++ + D +GKS+GFG V F+ AV+++ LN+ QNL+
Sbjct: 243 SEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLY 302
Query: 227 ERRITVRMDRVAD 239
R + +R+ +
Sbjct: 303 VGRAQKKRERIEE 315
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+ASL++I S VG V+ + + D T K G A V F + KA++ ++ GR
Sbjct: 63 EASLFEI--FSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRP 120
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D RRN G
Sbjct: 121 CRIMWSQRDPSLRRNGEGN----------------------------------------- 139
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F GK+ + ++A D+ G S+ FG V ++ A +I +N
Sbjct: 140 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVN 199
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 200 GMLLNDREVYV 210
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++T V + D+ P+G A V F P+ KAV +++ + +G+ L + A + K
Sbjct: 280 FSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRA-QKK 338
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + +L +N ++ Y G+N ++V NL +
Sbjct: 339 AER---------EAELRRKAENKRAEILKKYQ---------GVN------LYVRNLPDDM 374
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ LR+ F G + + + D G SRGFG V F P EA ++++ +N + + ++ +
Sbjct: 375 DEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLY 434
Query: 232 V 232
V
Sbjct: 435 V 435
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F + G + + ++A D +G S G+G V F++P +A +I+ +N
Sbjct: 170 VFIKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVN 229
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 230 GMLLNDKQVYV 240
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ DD G G V F++P+ A+NK++ G L K+
Sbjct: 188 FSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVN-----GMLLNDKQVYVGY 242
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R +R+ S + F N Y K + ++
Sbjct: 243 FKSRQ-------EREAS----EETHIFTNVY-----------------TKNLIPSM---C 271
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E+K+RE+F L G++ +V + +D++ +GF V F P A +++ LN ++ + +
Sbjct: 272 TEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLY 331
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 332 VGRAQKKAER 341
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK-GRKLVIKEAVED 110
G V +++ DD G RG V ++ PD KA +M+ E GR++ + A +
Sbjct: 213 FEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRA-QK 271
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ +L A + + Y G+N ++V NLD
Sbjct: 272 KAERQA---------ELKAKFEKIKQERIQRYQ---------GVN------LYVKNLDST 307
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+DE+ LR+ F G + + ++ + ++G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 IDEEILRKEFSQFGTITSSKV-MTENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPL 366
Query: 231 TVRM-DRVADR 240
V + R DR
Sbjct: 367 YVALAQRKEDR 377
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 37/191 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+TG +G V F++ + +A+ K++ G+K+ +
Sbjct: 120 FSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYV------- 172
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G V R + L ++G ++V N K
Sbjct: 173 --------GRFVPRS--------------------ERLAAMGEAQKRFTNIYVKNFGDKW 204
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE-RRI 230
D+ KLR+ F GKV + ++ D G SRGFG V ++ P A ++ +N+ + + RRI
Sbjct: 205 DDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRI 264
Query: 231 TV-RMDRVADR 240
V R + A+R
Sbjct: 265 YVGRAQKKAER 275
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 49/202 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 25 EAMLYE--KFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTMNFDTIKGKP 82
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 83 MRIMWSQRDPSLRK--------------------SGVGN--------------------- 101
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K + + F G + + ++A D+ G S+GFG V F+ A ++++
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVN 161
Query: 219 --MLNNQNLFERRITVRMDRVA 238
MLN + ++ R R +R+A
Sbjct: 162 GMMLNGKKVYVGRFVPRSERLA 183
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G VT + D GK +G V F + KA+ ++H E KG+ L + A + K
Sbjct: 180 FAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRA-QKK 238
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R + +L + K+ + L+ G+N ++V NL+ +
Sbjct: 239 GER---------EEELKKSYEQQ--KYDKS-------LKYQGVN------LYVKNLEDDM 274
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+K+ F G + + +I D+ G S+GFG V F P EA ++++ LN + ++ +
Sbjct: 275 DEEKVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLY 334
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 335 VSLAQRKD 342
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ALD++G S+G+G V ++ A +I
Sbjct: 66 LGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAEAAIQ 125
Query: 219 MLNNQNLFERRITV 232
+N L ++ + V
Sbjct: 126 AVNGMLLNDKVVYV 139
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V L ++ E + E+F G+V + + +D+DGKS+GFG V F A ++++ L+
Sbjct: 162 LYVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELH 221
Query: 222 N-----QNLFERRITVRMDR 236
+ Q L+ R + +R
Sbjct: 222 DSEHKGQTLYVSRAQKKGER 241
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 42 GDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
G L+ S+ G + V+++ DD+G RG V F+ + +KAV M+ E +GR
Sbjct: 206 GLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRL 265
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
L + A ++ M + R + Q+ +++ G+N
Sbjct: 266 LYVGRA------QKRMERQNELKRKFEQMKQDRLNRY-----------HVRGVN------ 302
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD ++++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 303 LYVKNLDDSINDEKLRKEFSPYGMITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 361
Query: 222 NQ 223
+
Sbjct: 362 GR 363
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 46/195 (23%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + + A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQLAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N Y V NL +
Sbjct: 171 -------GHFKSRQEREAELGARAMEFTNIY---------------------VKNLQVDM 202
Query: 172 DEKKLREVFRL-----AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
DE L+E+F GK+ +V++ D G SRGFG V F+ EA +++ +N + +
Sbjct: 203 DEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVR 262
Query: 227 ERRITV-----RMDR 236
R + V RM+R
Sbjct: 263 GRLLYVGRAQKRMER 277
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A + FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F G + + ++ D G SRGFG V F+ A +IS +N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T ++ D +GK +G V FQSPD AV K++ + + A + K
Sbjct: 222 FSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRA-QRK 280
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G R + +L A Q +S++ + +++ NLD K
Sbjct: 281 GER---------EAELKARFEQERNSRYEKLKAAN----------------LYLKNLDDK 315
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D++KL+E+F G + + ++ LD+ G S+G G V F P EA ++++ +N + + ++ +
Sbjct: 316 IDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPL 375
Query: 231 TV 232
V
Sbjct: 376 YV 377
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L+E F G V + ++A+D +G+S+G+G V+F++ A +I+ LN
Sbjct: 113 VFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLN 172
Query: 222 NQNLFERRITV-RMDRVADRLDG 243
+ ++ + V R R +R++
Sbjct: 173 GMLINDKEVFVGRFVRHQERIEA 195
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 37/170 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
++ G V ++ D+ G+ +G V+F++ + + A+N+
Sbjct: 131 FASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINR-------------------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
L+ +L N+ F + + +E+ G P V+V NL
Sbjct: 171 ---------------LNGMLINDKEVFVGRFVRHQERIEATG--SPKFTNVYVKNLSETT 213
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ L++ F G + + + D+ GKS+GFG V F P A ++ LN
Sbjct: 214 SDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 263
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 27/182 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T ++ D +GK +G V FQSPD AV K++ + + A + K
Sbjct: 232 FSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRA-QRK 290
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G R + +L A Q +S++ E L +++ NLD K
Sbjct: 291 GER---------EAELKARFEQERNSRY-----------EKLKAA-----NLYLKNLDDK 325
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D++KL+E+F G + + ++ LD+ G S+G G V F P EA ++++ +N + + ++ +
Sbjct: 326 IDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPL 385
Query: 231 TV 232
V
Sbjct: 386 YV 387
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L+E F G V + ++A+D +G+S+G+G V+F++ A +I+ LN
Sbjct: 123 VFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLN 182
Query: 222 NQNLFERRITV-RMDRVADRLDG 243
+ ++ + V R R +R++
Sbjct: 183 GMLINDKEVFVGRFVRHQERIEA 205
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 37/170 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
++ G V ++ D+ G+ +G V+F++ + + A+N+
Sbjct: 141 FASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINR-------------------- 180
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
L+ +L N+ F + + +E+ G P V+V NL
Sbjct: 181 ---------------LNGMLINDKEVFVGRFVRHQERIEATG--SPKFTNVYVKNLSETT 223
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ L++ F G + + + D+ GKS+GFG V F P A ++ LN
Sbjct: 224 SDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 273
>gi|403177298|ref|XP_003888795.1| hypothetical protein PGTG_22456 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172812|gb|EHS64731.1| hypothetical protein PGTG_22456 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 336
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK---GGRRNMGGGGGVDR 125
G +G +VEF + +AV +++ GR++ ++E E++ G GG GG
Sbjct: 6 GMSKGCGVVEFSTRQEAERAVKELNDTPLFGRQVFVREDREEEARYGSLAVSGGNGGRGP 65
Query: 126 DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185
S + G + G +C ++ ++ L + V + L+++FR AG
Sbjct: 66 LPSGFSSRGTGSVGRGFSGGRSSFSEGGQSCKQLS---ISGLPFNVGWQDLKDMFRSAGS 122
Query: 186 VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
+ ++ D DG G GTV F+ +A +ISM N R + VR DR A
Sbjct: 123 IIRADVYFDADGSPTGNGTVIFETSRDAQNAISMFNGFEYEGRTMEVREDRSA 175
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 470 SRYGS----GGNEMDYGGGSGQ--ASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKN 523
+RYGS GGN GG G + S G G+ G RS + +
Sbjct: 49 ARYGSLAVSGGN-----GGRGPLPSGFSSRGTGSVGRGFSGGRSSFSEGGQSCKQLSISG 103
Query: 524 LPPTITWQELRDKFRNCGDIKFAEIKGKGDI-----GLVRFDSEWTAKRAIDMMDRTRID 578
LP + WQ+L+D FR+ G I A++ D G V F++ A+ AI M + +
Sbjct: 104 LPFNVGWQDLKDMFRSAGSIIRADVYFDADGSPTGNGTVIFETSRDAQNAISMFNGFEYE 163
Query: 579 GKIIDV 584
G+ ++V
Sbjct: 164 GRTMEV 169
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I +D+ G +G V F++ + R+A+ K++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKIASDENGS-KGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRK 177
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ ALL + +F N V++ N ++
Sbjct: 178 --------------ERIALLGDKMKRF---------------------NNVYIKNFGDEL 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D+ K+RE+F GK+ + ++ D+ GKSRGFG V ++ P A +++ LN L
Sbjct: 203 DDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMEL 256
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G + +++ D+ GK RG V ++ P+ KAV+ ++ E G K++ + K R
Sbjct: 214 FGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAER 273
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ +L + + N Y G+N ++V NLD VD++
Sbjct: 274 QA---------ELKDKFEKIKMERINRY---------QGVN------LYVKNLDDVVDDE 309
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
+LR+ F G + + + + + G+S+GFG V F P EA ++++ +N + + + + V +
Sbjct: 310 RLRKEFSQFGTITSARV-MSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVAL 368
Query: 235 -DRVADR 240
R DR
Sbjct: 369 AQRKEDR 375
>gi|355705829|gb|AES02447.1| myelin expression factor 2 [Mustela putorius furo]
Length = 109
Score = 62.8 bits (151), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 32 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 91
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 92 NGIKISGREIDV 103
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 32 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 90
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 91 MNGIKISGREIDVRLDRNA 109
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L Q+ ST G +T ++ D GK R V F+SPD AV +++ K+
Sbjct: 197 DEDLEQL--FSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKV 254
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQ-NNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ + K R + +L A + K+ +G
Sbjct: 255 LYVGRAQRKAER---------EAELKARFELERIRKYEKYHG----------------TN 289
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLDY +++ KL+E+F G + + ++ L+ +G+S+G+G V F P A +++ +N
Sbjct: 290 LYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMN 349
Query: 222 NQNLFERRITV 232
+ + R + V
Sbjct: 350 GKMIGRRPLYV 360
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 43/190 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+A L+Q+ + VG + + + D+T + G A V F +P A+ ++ G+ +
Sbjct: 19 EAQLFQL--FARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLNFTPLNGKSI 76
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ + D R+ S + N V
Sbjct: 77 RVMFSNRDPSIRK--------------------SGYAN---------------------V 95
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
F+ NLD +D K L + F G V + ++A+D G+S+G+G V+FD+ A +I LN
Sbjct: 96 FIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNG 155
Query: 223 QNLFERRITV 232
+ ++++ V
Sbjct: 156 MLINDKKVYV 165
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
P V+V N ++ L ++F G + + + D DGKSR FG V F+ P AV +
Sbjct: 181 PKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAA 240
Query: 217 ISMLNNQNLFERRITV--RMDRVADR 240
+ LN + + ++ R R A+R
Sbjct: 241 VERLNGTTVNDDKVLYVGRAQRKAER 266
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 171 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 228 -------GRFKNR-------KDREAELRSKASEFTNVY---------------------I 252
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 253 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 312
Query: 225 L 225
+
Sbjct: 313 I 313
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A V
Sbjct: 268 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K+++ NLD
Sbjct: 328 ERQAELKQM------------FEQLKRERIRGCQGV----------------KLYIKNLD 359
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 360 DTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAE 239
>gi|443894565|dbj|GAC71913.1| acyl-coa oxidase [Pseudozyma antarctica T-34]
Length = 1385
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG ++ ++A+ DG+SRGFGTV F +A ++ + +
Sbjct: 722 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 781
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
R + V DR A + +GP
Sbjct: 782 GYEYSGRTLKVHFDRFAAQ-NGPA 804
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V+NL Y+V + L+++FR AG V +++L D +SRG+GTV +A+++ ML
Sbjct: 414 QLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDAIKAADML 473
Query: 221 NNQNLFERRITVRMDR 236
R + VR+DR
Sbjct: 474 GGFTWQGRTLDVRVDR 489
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTA 565
S++ R ++V NLP + WQ+L+D FR G + A++ D G V +E A
Sbjct: 407 SASDPRTQLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSADNRSRGYGTVLMATEQDA 466
Query: 566 KRAIDMMDRTRIDGKIIDV 584
+A DM+ G+ +DV
Sbjct: 467 IKAADMLGGFTWQGRTLDV 485
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK RG V ++ + KAV++M+ E G+ + + A
Sbjct: 112 FSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRA---- 167
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 168 --QKKVERQAELKRKFEQLKQERISRY-------------QGVN------LYIKNLDDTI 206
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ DG+S+GFG V F EA ++++ +N
Sbjct: 207 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFPSREEATKAVTEMN 255
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+
Sbjct: 20 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN------------------ 60
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
LL N+ F + + LG V++ N +V
Sbjct: 61 -----------------GLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 103
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L+E+F GK +V++ D GKSRGFG V ++ +A +++ +N + + + I
Sbjct: 104 DDGNLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIF 163
Query: 232 V 232
V
Sbjct: 164 V 164
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 60
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 61 GLLLNDRKVFVGRFKSRKEREAE 83
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 42/235 (17%)
Query: 18 DFPMFQRIETGAPLEVPVVMDLIQGDASL-----YQISHLSTVGDVTYVEILND-DTGKP 71
D P+ ++ + P + +L G+ S + G++ ++ D +TG+
Sbjct: 198 DEPIVKKSKVEEPAAEEGIKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETGRA 257
Query: 72 RGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLS--- 128
+G VEF + KA +MH +E GR+L + D S
Sbjct: 258 KGFGYVEFSNAADAAKAQKEMHEYELDGRQLNV---------------------DFSTPR 296
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188
A N N YG P N +F+ N+ ++ + ++EVF G +
Sbjct: 297 AKPDANGGARANKYGDK---------RSPPSNTLFLGNVSFECSNESIQEVFAEYGSITR 347
Query: 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
V + D+D G +GFG V+F EA ++ LN Q++ R +R+D R D
Sbjct: 348 VSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDIGGR--AIRIDYATPRED 400
>gi|343429355|emb|CBQ72928.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1168
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG ++ ++A+ DG+SRGFGTV F +A ++ + +
Sbjct: 436 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 495
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
R + V DR A + +GP
Sbjct: 496 GYEYSGRTLKVHFDRFAAQ-NGPA 518
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V+NL Y+V + L+++FR AG V +++L D +SRG+GTV +AV++ ML
Sbjct: 101 QLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSPDNRSRGYGTVLMATEHDAVKAADML 160
Query: 221 NNQNLFERRITVRMDR 236
R + VR+DR
Sbjct: 161 GGFTWQGRTLDVRVDR 176
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTA 565
S++ R ++V NLP + WQ+L+D FR G + A++ D G V +E A
Sbjct: 94 SASDPRTQLLVSNLPYRVRWQDLKDLFRKAGTVLRADVSLSPDNRSRGYGTVLMATEHDA 153
Query: 566 KRAIDMMDRTRIDGKIIDV 584
+A DM+ G+ +DV
Sbjct: 154 VKAADMLGGFTWQGRTLDV 172
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP WQ+L+D FR G+I+ A++ D G V F S+ A+ A+ +
Sbjct: 436 LFVGNLPFHCQWQDLKDLFRAAGNIQRADVAIGPDGRSRGFGTVLFASQEDAQNAVRLYH 495
Query: 574 RTRIDGKIIDVTF 586
G+ + V F
Sbjct: 496 GYEYSGRTLKVHF 508
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + DD GK +G V F+ + + AV+++H + KG+KL + A + K
Sbjct: 247 FTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKGQKLFVARA-QKK 305
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R A +KF G+N +++ N+
Sbjct: 306 SEREEE-----LRRSYEAAKNEKLAKF-------------QGVN------LYLKNIPESY 341
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LRE F G + + +I G SRGFG V + P EA +++S +N + L R +
Sbjct: 342 DDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLY 401
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 402 VALAQRKD 409
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+ N+D V +++ ++F GK+ + + D DGKS+GFG V F+ EA ++ L+
Sbjct: 229 VYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELH 288
Query: 222 N-----QNLFERRITVRMDR 236
+ Q LF R + +R
Sbjct: 289 DSDFKGQKLFVARAQKKSER 308
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + D+ GK RG V F+ + KA +++ + KG+KL + A +
Sbjct: 241 FSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKK- 299
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R Q SS+ + + G+N +FV NLD V
Sbjct: 300 -----------YERLQELKKQYESSRM-------EKLAKYQGVN------LFVKNLDDSV 335
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KL E F G + +V++ D+ G S+GFG V F P EA ++I+ N Q
Sbjct: 336 DDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQ 387
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 44/180 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY + S +G V+ + + D K G A V F + R A+ K++ KGR
Sbjct: 53 EALLYDL--FSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKLNYTPIKGRP 110
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D R+ G
Sbjct: 111 CRIMWSQRDPSLRKKGSGN----------------------------------------- 129
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NL +D K L + F + G + + +IA D+ GKSR FG V F+ A ++I +N
Sbjct: 130 VFIKNLHPAIDNKALHDTFSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAIN 189
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 36/191 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I D+TGK R V F+ + ++A++ ++ G ++ + V K
Sbjct: 148 FSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKK 207
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L S F N V+V N+D +
Sbjct: 208 --------------DRQSKLDEVKSNFTN---------------------VYVKNIDSET 232
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+++ ++F G + + + D +GK RGFG V F+ A+++ LN+ + +++
Sbjct: 233 TQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLY 292
Query: 232 V-RMDRVADRL 241
V R + +RL
Sbjct: 293 VGRAQKKYERL 303
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 171 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 228 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 252
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 253 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 312
Query: 225 L 225
+
Sbjct: 313 I 313
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A V
Sbjct: 268 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K+++ NLD
Sbjct: 328 ERQAELKQM------------FEQLKRERIRGCQGV----------------KLYIKNLD 359
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 360 DTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAE 239
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 171 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 228 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 252
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 253 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 312
Query: 225 L 225
+
Sbjct: 313 I 313
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 268 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA---- 323
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + Q C + K+++ NLD +
Sbjct: 324 --------------------QKKVERQAELKQMFEQLKRERICGCQGV-KLYIKNLDDTI 362
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 363 DDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAE 239
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 92/185 (49%), Gaps = 30/185 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A +
Sbjct: 487 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKK- 545
Query: 112 GGRRNMGGGGGVDR--DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
V+R +L + + L++ I + K++V NLD
Sbjct: 546 -----------VERQAELKQMFEQ---------------LKNERIRGCQVVKLYVKNLDD 579
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+D++KLR+ F G + V++ + ++G+S+GFG + F P +A+++++ +N + L +
Sbjct: 580 TIDDEKLRKEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKP 638
Query: 230 ITVRM 234
+++ +
Sbjct: 639 LSIAL 643
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 43/200 (21%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ +G K+ +
Sbjct: 390 TLYE--HFSAFGRILSSKVMSDDQGS-KGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFV 446
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +D A L++ +S+F N Y +
Sbjct: 447 --------------GRFKSRQDREAELRSKASEFTNVY---------------------I 471
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 472 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 531
Query: 225 -----LFERRITVRMDRVAD 239
+F R +++R A+
Sbjct: 532 INGQLIFVARAQKKVERQAE 551
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F G++ + ++ D G S+G+ V F + A ++I
Sbjct: 374 IGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 432
Query: 219 MLNNQ-----NLFERRITVRMDRVAD 239
+N + +F R R DR A+
Sbjct: 433 EMNGKLLQGCKVFVGRFKSRQDREAE 458
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
DA L V V++ I ++ TG + + F+ D AV MH E +G+KL
Sbjct: 196 DALLENFEQFGEV--VSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
A + K R + +L A + + Y G+N +
Sbjct: 254 YCGRA-QKKAERSS---------ELKAKYEKIKQERIQRYQ---------GVN------L 288
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D++ LRE F+ G + + ++ D +G+S+GFG V F P EA ++++ +N
Sbjct: 289 YVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMN 347
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D +G S+GFG V ++ A ++I +N
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVN 150
Query: 222 -----NQNLFERRITVRMDRVAD 239
++ +F R R DR+ +
Sbjct: 151 GMLMEDKKVFVARFKSRNDRMRE 173
>gi|239608856|gb|EEQ85843.1| RNP domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 534
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ EA +++ L
Sbjct: 161 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREEAQNAVATL 220
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R GP
Sbjct: 221 SNQNLMGRLVYVREDREAEPRFTGP 245
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
++V NL + + L ++F GKVE EI + +G+SRG G VEFD A +I
Sbjct: 435 IYVRNLPWSTCNEDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVEFDSAENAETAI 490
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV + GR + ++ ED+
Sbjct: 180 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREEAQNAVATLSNQNLMGRLVYVR---EDR 236
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G A G G +P S G +++V+NL + V
Sbjct: 237 EAEPRFTGP-------PARGDFGGPGRGGYGGYAPGPGASGG------RQIYVSNLPFNV 283
Query: 172 DEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ L+++FR A G V ++ +D G+ +G G V F+ +A +I N + R
Sbjct: 284 GWQDLKDLFRQAAQQGAVVRADVHIDPSGRPKGSGIVAFESADDARNAIQQFNGYDWQGR 343
Query: 229 RITVRMDR 236
+ VR DR
Sbjct: 344 TLEVREDR 351
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
ST+G V EI + G+ RG+ +VEF S + A+NK ++ GR L
Sbjct: 453 FSTIGKVERAEIQYEPNGRSRGTGVVEFDSAENAETAINKFTGYQYGGRPL 503
>gi|261203825|ref|XP_002629126.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239586911|gb|EEQ69554.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|327356167|gb|EGE85024.1| hypothetical protein BDDG_07969 [Ajellomyces dermatitidis ATCC
18188]
Length = 471
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
Q ++S+ + +V+V NL Y V L++ R AG+V ++ L +G S+G G VE
Sbjct: 83 QMIQSVRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVE 142
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVAD-RLDGP 244
+ EA +++ L+NQNL R + VR DR A+ R GP
Sbjct: 143 YATREEAQNAVATLSNQNLMGRLVYVREDREAEPRFTGP 181
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L ++F GKVE EI + +G+SRG G VEFD A +I+
Sbjct: 372 IYVRNLPWSTCNEDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVEFDSAENAETAINKF 430
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 21/189 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV + GR + ++E
Sbjct: 116 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREEAQNAVATLSNQNLMGRLVYVRE----- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK-VFVANLDYK 170
DR+ ++ + + ++V+NL +
Sbjct: 171 ------------DREAEPRFTGPPARGDFGGPGRGGYGGYAPGPGASGGRQIYVSNLPFN 218
Query: 171 VDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
V + L+++FR A G V ++ +D G+ +G G V F+ +A +I N +
Sbjct: 219 VGWQDLKDLFRQAAQQGAVVRADVHIDPSGRPKGSGIVAFESADDARNAIQQFNGYDWQG 278
Query: 228 RRITVRMDR 236
R + VR DR
Sbjct: 279 RTLEVREDR 287
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
ST+G V EI + G+ RG+ +VEF S + A+NK ++ GR L
Sbjct: 390 FSTIGKVERAEIQYEPNGRSRGTGVVEFDSAENAETAINKFTGYQYGGRPL 440
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G+ + ++ D+ GK RG V F+ + ++AV++M+ E G+ + + A + K
Sbjct: 211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRA-QKK 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQT-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ +D G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D+ KL+++F G ++ + D++GKSRGFG V F+ +A +++ +N + +
Sbjct: 203 DDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEM 256
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KGR + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G S+G+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 171 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 228 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 252
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 253 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 312
Query: 225 L 225
+
Sbjct: 313 I 313
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A V
Sbjct: 268 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K+++ NLD
Sbjct: 328 ERQAELKQM------------FEQLKRERIRGCQGV----------------KLYIKNLD 359
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 360 DTIDDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 415
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 155 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 213
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 214 EMNGKLLKGCKVFVGRFKNRKDREAE 239
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 170 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 226
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 227 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 251
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 252 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 311
Query: 225 L 225
+
Sbjct: 312 I 312
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 267 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA---- 322
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + Q C + K+++ NLD +
Sbjct: 323 --------------------QKKVERQAELKQMFEQLKRERIRGCQGV-KLYIKNLDDTI 361
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 362 DDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 414
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 154 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 212
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 213 EMNGKLLKGCKVFVGRFKNRKDREAE 238
>gi|156554134|ref|XP_001599142.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2A-like
[Nasonia vitripennis]
Length = 212
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 14/74 (18%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTN 324
L V WLLQ KVQK++L+ISN NTKEVLE+WDFK+ Y E + ++ N SK D
Sbjct: 69 LGQVQEWLLQRKVQKVTLVISNVNTKEVLEKWDFKVDY-----EIEVSNGNADSKGD--- 120
Query: 325 AEKDKIGNLPNMNT 338
G+LP M T
Sbjct: 121 ------GSLPEMGT 128
>gi|116179604|ref|XP_001219651.1| hypothetical protein CHGG_00430 [Chaetomium globosum CBS 148.51]
gi|88184727|gb|EAQ92195.1| hypothetical protein CHGG_00430 [Chaetomium globosum CBS 148.51]
Length = 530
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A Q++S L
Sbjct: 152 RVYVGNLSYDVKWHHLKDFMRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQQAVSSL 211
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R I VR DR A+
Sbjct: 212 SNQNLMGRLIYVREDREAE 230
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + L E+F GKVE EI + G+SRG G V FD A +I+
Sbjct: 432 IYVRNLPWSTSNDDLVELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDSADTAETAIAKF 490
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ ST+G V EI + +G+ RGS +V F S D A+ K ++ GR L
Sbjct: 447 VELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDSADTAETAIAKFQGYQYGGRPL 500
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 10/189 (5%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE--AVE 109
+ G+V Y ++L G +G IVE+ + + ++AV+ + GR + ++E E
Sbjct: 171 MRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQQAVSSLSNQNLMGRLIYVREDREAE 230
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ G GG + F + N P N+ +
Sbjct: 231 PRFGPPGGAARGGFAGPMGGGAPYGGGGFNPGMAAGGGGRQIYVSNLPF-------NVGW 283
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ + R+ R AG V ++ L DG+ +G G V F+ P +A +I N + R
Sbjct: 284 QDLKDLFRQAAR-AGGVIRADVHLGPDGRPKGSGIVVFESPEDARNAIQQFNGYDWQGRM 342
Query: 230 ITVRMDRVA 238
+ VR DR A
Sbjct: 343 LEVREDRFA 351
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
DA L V V++ I ++ TG + + F+ D AV MH E +G+KL
Sbjct: 196 DALLKNFEQFGEV--VSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
A + K R + +L A + + Y G+N +
Sbjct: 254 YCGRA-QKKAERSS---------ELKAKYEKIKQERIQRYQ---------GVN------L 288
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D++ LRE F+ G + + ++ D +G+S+GFG V F P EA ++++ +N
Sbjct: 289 YVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMN 347
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D +G S+GFG V ++ A ++I +N
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVN 150
Query: 222 -----NQNLFERRITVRMDRVAD 239
++ +F R R DR+ +
Sbjct: 151 GMLMEDKKVFVARFKSRNDRMRE 173
>gi|328852686|gb|EGG01830.1| hypothetical protein MELLADRAFT_72916 [Melampsora larici-populina
98AG31]
Length = 363
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V+V NL Y V ++L++ R AG+V E+ + DG+S+G G VEF A ++I+
Sbjct: 34 HRVYVGNLPYAVGWRELKDFMREAGEVSFAEVLMGPDGRSKGCGVVEFSTADGAQKAIAD 93
Query: 220 LNNQNLFERRITVRMDRVADRLDG--PVRLP 248
L+++ LF R I VR DR G PV P
Sbjct: 94 LSDRALFGRPIFVREDRETQPRYGHQPVHRP 124
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 488 ASIQSGGYGNPRAGLD-SNRSMNQS--SNIERDTVVVKNLPPTITWQELRDKFRNCGDIK 544
A++ G+G P G+ SNR+ + +++ V V NLP + W+EL+D R G++
Sbjct: 2 AAVMGYGHGIPHFGMQASNRAALAAAAHSVQAHRVYVGNLPYAVGWRELKDFMREAGEVS 61
Query: 545 FAEI------KGKGDIGLVRFDSEWTAKRAI-DMMDRT 575
FAE+ + KG G+V F + A++AI D+ DR
Sbjct: 62 FAEVLMGPDGRSKG-CGVVEFSTADGAQKAIADLSDRA 98
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 10/190 (5%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V++ E+L G+ +G +VEF + D +KA+ + GR + ++E E +
Sbjct: 54 MREAGEVSFAEVLMGPDGRSKGCGVVEFSTADGAQKAIADLSDRALFGRPIFVREDRETQ 113
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK-VFVANLDYK 170
G V R + N+ + + + + +F++ L
Sbjct: 114 ----PRYGHQPVHRPGPNGIHNHYGQHHGQHHGQYHGQYHGQYHGQGAGRQLFISGLALT 169
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
V + L+++FR AG V ++ K G GTV + EA +I+ N + RI
Sbjct: 170 VTWRTLKDMFRQAGNVIRADVTAGK-----GTGTVLMSNEAEAHAAIATFNGSQIEGSRI 224
Query: 231 TVRMDRVADR 240
VR DR A+
Sbjct: 225 MVREDRFANH 234
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRID 578
+ + L T+TW+ L+D FR G++ A++ G V +E A AI + ++I+
Sbjct: 161 LFISGLALTVTWRTLKDMFRQAGNVIRADVTAGKGTGTVLMSNEAEAHAAIATFNGSQIE 220
Query: 579 GKIIDV 584
G I V
Sbjct: 221 GSRIMV 226
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 45/203 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY++ + +G V + + D T K G A + F + +A++ ++ KGR
Sbjct: 61 EAVLYEV--FNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPIKGRP 118
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ + D RR+ G
Sbjct: 119 CRLMWSHRDPALRRSGAGN----------------------------------------- 137
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD +D K L + F L G + + ++AL DGKSRGFG V F+ A +I+ LN
Sbjct: 138 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 197
Query: 222 NQNLFERRITVR-MDRVADRLDG 243
+ E+ + V + A+R DG
Sbjct: 198 GMQIGEKTVYVAPFKKTAERNDG 220
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
++V NL VD+ +L+++F G V +V++ +D G SRGFG V F EA ++++
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 219 --MLNNQNLF----ERRITVRMDRVADRLDGP 244
++ + L+ E+R R++R+ R P
Sbjct: 437 LKLIGGKPLYVGMHEKR-EQRLERLQQRYRAP 467
>gi|448112471|ref|XP_004202105.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
gi|359465094|emb|CCE88799.1| Piso0_001581 [Millerozyma farinosa CBS 7064]
Length = 406
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLS 128
G+ RG A VEF + + V KA++K +E GR++ +++ +R D
Sbjct: 137 GRSRGMATVEFSNKEDVAKAISKFDHYEFLGREIFVRQDYPPPSDKR-KDDSPREDSFSK 195
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188
+ NS +T P + P ++FV NL + ++ + L+++ R AG+V
Sbjct: 196 GYNERNSRSAVSTRDQPP-------VPKPGT-EIFVGNLPFSINWQALKDLMREAGEVVR 247
Query: 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
++ D GKSRGFGTV F+ EA +++ + RR+ R R ++ D
Sbjct: 248 ADVRTDNWGKSRGFGTVVFNTEEEAAKAVEYFQGYEIEGRRLDTRPGRKSNYAD 301
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V ++ D+ GK RG V F + + KAV +E +GR+L + +
Sbjct: 239 MREAGEVVRADVRTDNWGKSRGFGTVVFNTEEEAAKAVEYFQGYEIEGRRL------DTR 292
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR++ + + L +N+ N G + N +F +NL +
Sbjct: 293 PGRKSNYADD--ENEAQQALPSNTDFTDNVVGEGDR-----------SNTIFASNLPWAT 339
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+E L E+F GKV E+ L++ GK G ++F+ A +I+ L+N N
Sbjct: 340 NEDDLYELFETIGKVSRAELQLNEKGKPSGNAVIQFEQEENADIAIANLDNYNY 393
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
RR GG RD A N S+ + Y + N +F+ N+ +
Sbjct: 63 RRGYKRGGYRGRDFVARRDFNYSRNPDEYRSKSE--------RNYDNSIFIGNIPFSCTS 114
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
K ++E+F+ ++ +I + G+SRG TVEF + + ++IS ++ R I VR
Sbjct: 115 KDIQELFKDDFQLIKADIVTSR-GRSRGMATVEFSNKEDVAKAISKFDHYEFLGREIFVR 173
Query: 234 MD 235
D
Sbjct: 174 QD 175
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP +I WQ L+D R G++ A++ K +G G V F++E A +A++
Sbjct: 221 IFVGNLPFSINWQALKDLMREAGEVVRADVRTDNWGKSRG-FGTVVFNTEEEAAKAVEYF 279
Query: 573 DRTRIDGKIIDV 584
I+G+ +D
Sbjct: 280 QGYEIEGRRLDT 291
>gi|389637404|ref|XP_003716339.1| RNP domain-containing protein [Magnaporthe oryzae 70-15]
gi|351642158|gb|EHA50020.1| RNP domain-containing protein [Magnaporthe oryzae 70-15]
Length = 428
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 29/196 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV + GR + ++E
Sbjct: 64 MRQAGEVIFADVLLLPNGMSKGCGIVEYATREQAQNAVATLSNQNLMGRLVYVRE----- 118
Query: 112 GGRRNMGGGGGVDRDLSALLQ--NNSSKFGNTYGLSPQFLESLGINC-------PLINKV 162
DR+ Q NN+ G P +V
Sbjct: 119 ------------DREAEPRFQGANNARGGFGGGAQGGFGGGGGGGFPMGGASGPPQGRQV 166
Query: 163 FVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
FV NL Y VD ++++++FR A G V +I + D + +G G V +DHP +A +I
Sbjct: 167 FVNNLPYNVDWREMKDLFRQAARVGGVHRADIHMTPDNRPKGSGIVIYDHPDDANNAIQQ 226
Query: 220 LNNQNLFERRITVRMD 235
N + R I VRMD
Sbjct: 227 FNGYEWYGRTIEVRMD 242
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 45 RVYVGNLSYDVKWHHLKDFMRQAGEVIFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 104
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 105 SNQNLMGRLVYVREDREAE 123
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L E+F GKVE EI + G+SRG G V FD+ A SI+
Sbjct: 330 IYVRNLPWSTSNEDLVELFTTIGKVEQAEIQYEPSGRSRGSGVVRFDNAETAETSIAKF 388
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G+ + ++ D+ GK RG V F+ + +KAV++M+ E G+ + + A + K
Sbjct: 211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRA-QKK 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQT-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N ++
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGDEM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLRE+F G ++ + D++GKSRGFG V F+ +A +++ +N + +
Sbjct: 203 DDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEM 256
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KG+ + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGQPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G S+G+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 45/203 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY++ + +G V + + D T K G A + F + +A++ ++ KGR
Sbjct: 61 EAVLYEV--FNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPIKGRP 118
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ + D RR+ G
Sbjct: 119 CRLMWSHRDPALRRSGAGN----------------------------------------- 137
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD +D K L + F L G + + ++AL DGKSRGFG V F+ A +I+ LN
Sbjct: 138 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 197
Query: 222 NQNLFERRITVR-MDRVADRLDG 243
+ E+ + V + A+R DG
Sbjct: 198 GMQIGEKTVYVAPFKKTAERNDG 220
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
++V NL VD+ +L+++F G V +V++ +D G SRGFG V F EA ++++
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 219 --MLNNQNLF----ERRITVRMDRVADRLDGP 244
++ + L+ E+R R++R+ R P
Sbjct: 437 LKLIGGKPLYVGMHEKR-EQRLERLQQRYRAP 467
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G+ + ++ D+ GK RG V F+ + +KAV++M+ E G+ + + A + K
Sbjct: 211 FSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRA-QKK 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQT-----ELKRKFEQMKQDRMTRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N ++
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGDEM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLRE+F G ++ + D++GKSRGFG V F+ +A +++ +N + +
Sbjct: 203 DDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEM 256
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KG+ + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGQPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G S+G+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 26/161 (16%)
Query: 61 VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
V+++ D +GK +G V ++ + KAV +M+ E G+ + + A ++ +
Sbjct: 217 VKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA------QKKVERQ 270
Query: 121 GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVF 180
+ R L Q S++ G+N +++ NLD +D++KLR+ F
Sbjct: 271 AELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTIDDEKLRKEF 311
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 312 SPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 351
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F K +V++ D GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELF---SKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 259
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 260 VGRAQKKVERQAE 272
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 30/179 (16%)
Query: 56 GDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G V + E++ N T + RG V + + + KA+NK +E GR L + +A +
Sbjct: 144 GSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARP 203
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
P+ S + V+V NL + VD
Sbjct: 204 ER----------------------------PPRTFGSGSGSRDSGLSVYVGNLPWSVDAA 235
Query: 175 KLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+L E+FR G VEN I +D++ G+SRGFG V + +I+ L+ Q+L R I V
Sbjct: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPV 211
I C +K+F+ L Y D+ LRE F G+V + +D++ G+SRGFG V F
Sbjct: 33 AIRCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSE 92
Query: 212 EAVQSISMLNNQNLFERRITVRMDRVADR 240
EA +I L+ Q+L RR VR++ DR
Sbjct: 93 EASSAIQALDGQDLHGRR--VRVNYATDR 119
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D TGK +G V F+ + KAV +M+ + G+ + + A ++
Sbjct: 202 GKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRA------QK 255
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R L Q S++ G+N +++ NLD +D++K
Sbjct: 256 KVERQAELKRRFEQLKQERISRYQ-------------GVN------LYIKNLDDTIDDEK 296
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 297 LRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 341
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 106 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 157
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 158 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 189
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+++L+E+F GK +V++ D GKS+GFG V F+ EA +++ +N +++ F
Sbjct: 190 DDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVF 249
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 250 VGRAQKKVERQAE 262
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 85 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 143
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 144 KMNGMLLNDRKVFVGRFKSRKEREAE 169
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 25/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++T E++ + GK +G V F +P+ AV +H +G L + K
Sbjct: 173 FAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQK 231
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ +L + + ++ Y G+N ++V NLD V
Sbjct: 232 KSERHA--------ELKKKHEQHKAERMQKY---------QGVN------LYVKNLDETV 268
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ L++ F G + + ++ D++G+S+GFG V F+ P EA +++ +N++ + + +
Sbjct: 269 DDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLY 328
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 329 VAIAQRKEDR 338
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 49 ISHLSTVGDVTYVEILNDDTGK-PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
S G V + + D+ + G A V FQ P +A++ M+ G+ + I +
Sbjct: 49 FEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
Query: 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
D RR+ G G + ++N F + Q LG V+V N
Sbjct: 109 QRDPAMRRS--GAGNI------FIKNLDKVFVGKFQPRAQRNRELGETAKQFTNVYVKNF 160
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+++ L ++F G + + E+ + +GKS+GFG V F +P EA ++ L++ +
Sbjct: 161 GDHYNKETLEKLFAKFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTI 217
>gi|349602746|gb|AEP98789.1| Myelin expression factor 2-like protein, partial [Equus caballus]
Length = 126
Score = 62.0 bits (149), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 49 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 108
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 109 NGIKISGREIDV 120
Score = 57.0 bits (136), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 49 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 107
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 108 MNGIKISGREIDVRLDRNA 126
>gi|403173301|ref|XP_003332385.2| hypothetical protein PGTG_13770 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170218|gb|EFP87966.2| hypothetical protein PGTG_13770 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 965
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 137 KFGNTYGLSPQFLESLGIN------------CPLINKVFVANLDYKVDEKKLREVFRLAG 184
+G + P + S N C +FV NL + + + L+++FR AG
Sbjct: 433 HYGPPHSYPPHHISSTTFNHAPYSSIHGQNVCSASRLLFVGNLPFNLQWQDLKDLFRQAG 492
Query: 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV------- 237
+ ++A +G+SRGFGTV F +A++++ M + L R + VR D++
Sbjct: 493 NILRADVATTAEGRSRGFGTVLFATAEDAMKALEMYDGYELKGRPLKVRFDQLNHMSSSG 552
Query: 238 ----ADRLDGPVRLPEGLKSIGMGLGANGAPL--QDVANWLLQEKVQKLSLIISNRNTKE 291
D P P I G + PL + + QE+ S S T+E
Sbjct: 553 NPAPGSWPDFPTITPPNFHPIHQGPHQSSHPLIQEPIPTTNEQEEYPMYSSTTSAEETRE 612
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F+ NL ++V + L+++FR AG V +++L D +S+GFGTV F + +A ++I +
Sbjct: 35 QLFINNLPFRVRWQDLKDLFRKAGTVLRADVSLTPDNRSKGFGTVLFANRNDAFKAIEIY 94
Query: 221 NNQNLFERRITVRMDR 236
N + R + V++D+
Sbjct: 95 NGFSWQTRILDVKLDQ 110
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP + WQ+L+D FR G+I A++ + G V F + A +A++M D
Sbjct: 470 LFVGNLPFNLQWQDLKDLFRQAGNILRADVATTAEGRSRGFGTVLFATAEDAMKALEMYD 529
Query: 574 RTRIDGKIIDVTF 586
+ G+ + V F
Sbjct: 530 GYELKGRPLKVRF 542
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ VG +T + D+ GK RG V +++ + KAV +++ + KG+ L + A + K
Sbjct: 243 FTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRA-QKK 301
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + + A K+ G+N +FV NLD +
Sbjct: 302 HERLQE-----LKKQYEAFRLEKLEKYQ-------------GVN------LFVKNLDDTI 337
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KL E F G + +V++ ++GKS+GFG V F P EA ++I+ N Q
Sbjct: 338 DDQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQ 389
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 85/223 (38%), Gaps = 49/223 (21%)
Query: 20 PMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVE 78
P Q++ET + +D +A LY I S +G V+ + + D K G A V
Sbjct: 32 PESQKVETSSASLYVGELDPSVSEALLYDI--FSPIGSVSSIRVCRDAITKTSLGYAYVN 89
Query: 79 FQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKF 138
F + + A+ K++ KG I + D R+ G
Sbjct: 90 FNDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGN------------------ 131
Query: 139 GNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGK 198
+F+ NL +D K L + F + G + + +IA D+ G
Sbjct: 132 -----------------------IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGN 168
Query: 199 SRGFGTVEFDHPVEAVQSIS-----MLNNQNLFERRITVRMDR 236
SRGFG V F+ A ++I +LN Q ++ + + DR
Sbjct: 169 SRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDR 211
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 36/191 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I D+ G RG V F+ + ++A++ ++ G+++ + + V K
Sbjct: 150 FSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKK 209
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L + F N V+V N+
Sbjct: 210 --------------DRQSKLDEAKANFTN---------------------VYVKNIHPDT 234
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+++ E F G + + + D +GK RGFG V +++ +A +++ LN + + +
Sbjct: 235 GDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLH 294
Query: 232 V-RMDRVADRL 241
V R + +RL
Sbjct: 295 VGRAQKKHERL 305
>gi|409076926|gb|EKM77294.1| hypothetical protein AGABI1DRAFT_130386 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 853
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG + ++AL DG+SRGFGTV F +A +++ M N
Sbjct: 214 LFVGNLPFHCQWQDLKDLFRQAGTIMRADVALGPDGRSRGFGTVVFATEQDAERAVKMFN 273
Query: 222 NQNLFERRITVRMDRVA 238
R + V DR +
Sbjct: 274 GYEYNGRVLKVHFDRYS 290
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I M + +
Sbjct: 69 LPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGRAIDMFHGYSWQ 128
Query: 227 ERRITVRMDRVADRLD 242
R + VR DR+ D
Sbjct: 129 TRILEVRPDRLPPDFD 144
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSE 562
+N SS+ R+ + V NLP WQ+L+D FR G I A++ D G V F +E
Sbjct: 204 LNASSSSCRN-LFVGNLPFHCQWQDLKDLFRQAGTIMRADVALGPDGRSRGFGTVVFATE 262
Query: 563 WTAKRAIDMMDRTRIDGKIIDVTF 586
A+RA+ M + +G+++ V F
Sbjct: 263 QDAERAVKMFNGYEYNGRVLKVHF 286
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 27/192 (14%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
G++ V I+ D D+G+ +G VEF P +KA+ + E GR+L + +
Sbjct: 261 EFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAKNGAELDGRELRLDFSTP 320
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R N G G G + + +++FG+T N P +FV N+ +
Sbjct: 321 ----RTNDGPGAGNKSN------DRAARFGDT------------TNAPAAT-LFVGNISF 357
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
DE + E F+ G ++ V + D++ G +GFG VE EA + + L ++ R
Sbjct: 358 DADENAITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIEEAQAAFTALQGADIAGR 417
Query: 229 RITVRMDRVADR 240
I R+D A+R
Sbjct: 418 PI--RLDYAAER 427
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
+FV N+ + VDE+ L F G++ V I D+D G+S+GFG VEF P A +++
Sbjct: 244 LFVGNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAK 303
Query: 221 NNQNLFERRITVRMDRVADRL-DGP 244
N L R + R+D R DGP
Sbjct: 304 NGAELDGREL--RLDFSTPRTNDGP 326
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|426195272|gb|EKV45202.1| hypothetical protein AGABI2DRAFT_120172 [Agaricus bisporus var.
bisporus H97]
Length = 853
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG + ++AL DG+SRGFGTV F +A +++ M N
Sbjct: 214 LFVGNLPFHCQWQDLKDLFRQAGTIMRADVALGPDGRSRGFGTVVFATEQDAERAVKMFN 273
Query: 222 NQNLFERRITVRMDRVA 238
R + V DR +
Sbjct: 274 GYEYNGRVLKVHFDRYS 290
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I M + +
Sbjct: 69 LPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGRAIDMFHGYSWQ 128
Query: 227 ERRITVRMDRVADRLD 242
R + VR DR+ D
Sbjct: 129 TRILEVRPDRLPPDFD 144
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSE 562
+N SS+ R+ + V NLP WQ+L+D FR G I A++ D G V F +E
Sbjct: 204 LNASSSSCRN-LFVGNLPFHCQWQDLKDLFRQAGTIMRADVALGPDGRSRGFGTVVFATE 262
Query: 563 WTAKRAIDMMDRTRIDGKIIDVTF 586
A+RA+ M + +G+++ V F
Sbjct: 263 QDAERAVKMFNGYEYNGRVLKVHF 286
>gi|412986331|emb|CCO14757.1| predicted protein [Bathycoccus prasinos]
Length = 290
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 49 ISHLSTVGD-VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
I H T+G V E+ G+ +G A+++F S + V +H E + R +++
Sbjct: 130 IEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASKEAADAGVKALHDTECRARSIIV--- 186
Query: 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
R GG + + NSS GL ++ V NL
Sbjct: 187 ------RAERPGGAAATKPPREIRPENSS------GL----------------QIVVRNL 218
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
+ LR+VF+ G V + + D G+S+G+GTV F+ +A +I+ N L
Sbjct: 219 PWSTTSDDLRQVFQQVGTVVDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNGVELE 278
Query: 227 ERRITVRMDR 236
R + +++DR
Sbjct: 279 GRPMQIKIDR 288
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
P N+++V N+ + ++L+ +F A EN+EI + +SRG+ V F A +
Sbjct: 6 PQSNRLYVGNIPWSTTVEELQGLFTDA---ENIEIPTGRQNRSRGYALVSFSDESAAQSA 62
Query: 217 ISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVAN 270
+ +N L +R I+VR D LP+ KS G G GAP+Q N
Sbjct: 63 MQAMNGHALGDRNISVRADNP---------LPKAPKSSSRGSG--GAPVQRPTN 105
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G VT + D+ GK RG V F+ KAV+ ++ E +G +++ + K
Sbjct: 261 FEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKK 320
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + + Q SK+ G+N +FV NLD +
Sbjct: 321 REREE-----SLRKQWQQARQERISKY-------------QGVN------LFVKNLDDTI 356
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ KL+E F GK+ + ++ + GKSRGFG V + P EA ++I+ ++ + + + +
Sbjct: 357 DDTKLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLY 416
Query: 232 VRM 234
V +
Sbjct: 417 VAL 419
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V N ++ E +LRE+F GKV + + D +GK+RGFG V F+ EA +++ LN
Sbjct: 243 VYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALN 302
Query: 222 NQNLFERRI 230
+ L RI
Sbjct: 303 EKELEGGRI 311
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 49/200 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
++ LY+I S VG V+ + + B T K A V +Q + A++ + + KG++
Sbjct: 73 ESDLYEI--FSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQ 130
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D R+ G
Sbjct: 131 CRIMWSQRDPSMRKKGTGN----------------------------------------- 149
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NL +D K L + F GK+ + +IA D+ G S+GFG V +D A +I
Sbjct: 150 VFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVN 209
Query: 219 --MLNNQNLFERRITVRMDR 236
+LNN ++ R DR
Sbjct: 210 GMLLNNMEVYVAPHIPRKDR 229
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K+++K++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L S++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLSRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++++LR F G + + ++ ++ DG+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 NDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 37/186 (19%)
Query: 52 LSTVGDVTYVE--ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
L G + +VE + + +TG+ RG V S D + AV K+ +GR L +
Sbjct: 21 LQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQKLDGHIVQGRALKASYSQP 80
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
K G G V+ S KVF+ NL +
Sbjct: 81 YK----KAGKEGPVEVAASH------------------------------TKVFIGNLPW 106
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
VD+ L E FR GKV V+I D+D G+SRGFG V P EA +++ L+ + R
Sbjct: 107 GVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGR 166
Query: 229 RITVRM 234
R+ V++
Sbjct: 167 RLRVKL 172
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V ++ D+ G+ RG V F + R+AV +M+ E GR L + A
Sbjct: 211 FTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + G + R + Q ++ G+N ++V NLD +
Sbjct: 267 --QKRLERQGELKRKFEQIKQERIQRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ D G SRGFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMN 354
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 58/253 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LYQ S G + + + D T + G A + FQ P A++ M+ KGR
Sbjct: 24 EAMLYQ--KFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------Y 142
+ I + D G R++ G G +++ + N + S FGN Y
Sbjct: 82 IRIMWSQRDPGLRKS-GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 143 GL--------SPQFLESL-------------------------GINCPLINKVFVANLDY 169
G + + +E++ G V++ N
Sbjct: 141 GFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGE 200
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+D +KL+ +F GK +V + D+ G+SRGFG V F + +A ++++ +N + L R
Sbjct: 201 DIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRV 260
Query: 230 ITVRMDRVADRLD 242
+ V R RL+
Sbjct: 261 LYV--GRAQKRLE 271
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 170 -------GRFKNR-------KDREAELRSKASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA---- 265
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + Q C + K+++ NLD +
Sbjct: 266 --------------------QKKVERQAELKQMFEQLKRERIRGCQGV-KLYIKNLDDTI 304
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 305 DDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKLLKGCKVFVGRFKNRKDREAE 181
>gi|443898591|dbj|GAC75925.1| FOG: RRM domain [Pseudozyma antarctica T-34]
Length = 593
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++F+ NL Y+ + L+++FR AG V +I + DG+S+G G V F + +A +I+M
Sbjct: 300 QLFIGNLPYETSWQDLKDLFRSAGNVTRADINMGPDGRSKGTGIVAFANSNDASNAIAMY 359
Query: 221 NNQNLFERRITVRMDRVA 238
+N + R++ VR+DR A
Sbjct: 360 HNYDFKGRQLEVRLDRFA 377
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + + L E+F+ GKV+ EI + G+S+G G V+F +A +I+
Sbjct: 482 QIFVKNLPWSTSNEDLVELFQTTGKVDEAEIMFEG-GRSKGCGVVQFASVQDAETAIAKF 540
Query: 221 NNQNLFERRITVRMDR 236
NN R + + +R
Sbjct: 541 NNYVYGGRPLEIYFNR 556
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ + NLP +WQ+L+D FR+ G++ A+I + KG G+V F + A AI M
Sbjct: 301 LFIGNLPYETSWQDLKDLFRSAGNVTRADINMGPDGRSKG-TGIVAFANSNDASNAIAMY 359
Query: 573 DRTRIDGKIIDV 584
G+ ++V
Sbjct: 360 HNYDFKGRQLEV 371
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
I C +K+F+ L Y D+ LRE F G+V + +D++ G+SRGFG V F E
Sbjct: 34 IRCMSSSKLFIGGLSYSTDDTSLREAFYKYGEVIEARVIVDRETGRSRGFGFVTFTSSEE 93
Query: 213 AVQSISMLNNQNLFERRITVRMDRVADR 240
A +I L+ Q+L RR VR++ DR
Sbjct: 94 ASSAIQALDGQDLHGRR--VRVNYATDR 119
>gi|195114022|ref|XP_002001566.1| GI16471 [Drosophila mojavensis]
gi|193912141|gb|EDW11008.1| GI16471 [Drosophila mojavensis]
Length = 252
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F +NLD +V E+ L EVF AG +E+ I LD G+ R FG V + H + ++
Sbjct: 71 VRTLFCSNLDERVTEEILYEVFLQAGPIESARIPLDNTGRQRNFGFVTYQHKIAVPYAVE 130
Query: 219 MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPL-QDVAN 270
+ LF++++ +R + PE K MG G P QD ++
Sbjct: 131 LYQGLELFQKKLIIRQ-----------QCPEKPKLSAMGQGRTRNPFSQDFSS 172
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 24/172 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---VEDKG 112
G V+++ D++GK +G V F+ + RKAV +M+ + G+++ + A VE +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 113 GRRNMGGGGGVDRD-LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ G D+ + + Q+ S + C +N ++V NLD +
Sbjct: 275 ELKHKFGQMKQDKHKIERVPQDRS------------------VRCKGVN-LYVKNLDDGI 315
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 316 DDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGK 366
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ K+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEEAERAIEKMNGMFLNDHKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G RD A L + +F N V++ NL +
Sbjct: 171 -------GRFKSRRDRQAELGARAKEFTN---------------------VYIKNLGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N ++L ++I
Sbjct: 203 DDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD +D K L + F G + + ++ D++G S+G+G V F+ EA ++I
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
LN+ +F R R DR A+
Sbjct: 157 KMNGMFLNDHKVFVGRFKSRRDRQAE 182
>gi|68064271|ref|XP_674124.1| u1 small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492466|emb|CAH97184.1| u1 small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 319
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
I+ L +F+ L Y+V+EKKL++ F GK++ V++ D+D K RG+ +EF+H
Sbjct: 41 ISSDLKKTLFIGRLSYEVNEKKLKKEFETYGKIKYVKVIYDQDKKPRGYAFIEFEHTKSV 100
Query: 214 VQSISMLNNQNLFERRITVRMDRV 237
+ ++ + + + RRI V M+R
Sbjct: 101 TDAYNLADGKKIDNRRILVDMERA 124
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 40/193 (20%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
Q A L++ + + +V Y N DT + RG V + + +KAV K +R+E GR
Sbjct: 127 QALAMLFEQAGTVEISEVIY----NRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGR 182
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + A +G R + ++ +
Sbjct: 183 LLTVNIAAP-RGSRP----------------ERQPRQYDAAF------------------ 207
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V NL + VD +L++VF GKV + + D++ G+SRGFG V + E +I+
Sbjct: 208 RIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAA 267
Query: 220 LNNQNLFERRITV 232
L+ QNL R I V
Sbjct: 268 LDGQNLEGRAIKV 280
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y VD + L +F AG VE E+ ++D +SRGFG V EA +++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEK 173
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
N + R +TV + A R P R P
Sbjct: 174 FNRYEVNGRLLTVNI--AAPRGSRPERQP 200
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V ++ D+ G+ RG V F + R+AV +M+ E GR L + A
Sbjct: 211 FTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + G + R + Q ++ G+N ++V NLD +
Sbjct: 267 --QKRLERQGELKRKFEQIKQERIQRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ D G SRGFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 58/253 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LYQ S G + + + D T + G A + FQ P A++ M+ KGR
Sbjct: 24 EAMLYQ--KFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------Y 142
+ I + D G R++ G G +++ + N + S FGN Y
Sbjct: 82 IRIMWSQRDPGLRKS-GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGY 140
Query: 143 GL--------SPQFLESL-------------------------GINCPLINKVFVANLDY 169
G + + +E++ G V++ N
Sbjct: 141 GFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGE 200
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+D +KL+ +F GK +V + D+ G+SRGFG V F + +A ++++ +N + L R
Sbjct: 201 DIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRV 260
Query: 230 ITVRMDRVADRLD 242
+ V R RL+
Sbjct: 261 LYV--GRAQKRLE 271
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 170 -------GRFKNR-------KDREAELRSKASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA---- 265
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + Q C + K+++ NLD +
Sbjct: 266 --------------------QKKVERQAELKQMFEQLKRERIRGCQGV-KLYIKNLDDTI 304
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 305 DDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKLLKGCKVFVGRFKNRKDREAE 181
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + KAV+ M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRRFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N V++ N +
Sbjct: 171 -------GRFKCRREREAELGAKAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D+++L+E F GK +V++ D GKS+GFG V F+ +A +++ +N ++ +F
Sbjct: 203 DDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKCRREREAE 182
>gi|33874022|gb|AAH08895.2| HNRPM protein, partial [Homo sapiens]
Length = 425
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 350 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 409
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 410 MKLSGREIDVRI 421
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 349 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 407
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 408 NGMKLSGREIDVRIDRNA 425
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V V+++ D+ GK +G V F+ + +KAV++M+ E G+ + + A +
Sbjct: 215 GQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK----- 269
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
VDR + L+ + G+ Q GIN ++V NLD +D+++
Sbjct: 270 -------VDRHIE--LKRKFEQVTQDRGIRYQ-----GIN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L++ F G + + ++ + + G+S+GFG V F P EA +++S +N
Sbjct: 310 LQKEFSPFGTITSTKV-MTEGGRSKGFGFVCFSSPEEATKAVSEMN 354
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N ++
Sbjct: 171 -------GQFKSRKEREAELGTRTKEFTN---------------------VYIKNFGDRM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+K L +F G+V +V++ D+ GKS+GFG V F+ +A +++ +N + L + I
Sbjct: 203 DDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G P+ V DL +A LY+ S+ G + + + D T + G A V F+ P
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYE--KFSSAGPILSIRVYRDVITRRSLGYASVNFEQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D RR S GN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRR--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NL+ +D K L + F G + + ++ D++G S+G G
Sbjct: 101 -----------------VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A ++I +N L +R++ V
Sbjct: 143 VHFETEEAAERAIEKMNGMLLNDRKVFV 170
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
SLY+ S G + ++++DD G +G A V FQS +A+ +M+ K K+ +
Sbjct: 113 SLYEC--FSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +D A L+N +S+F N Y +
Sbjct: 170 --------------GRFKSRKDREAELRNKASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++LREVF G++ +V++ + GKSRGFG V FD A +++ +N +
Sbjct: 195 KNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKE 254
Query: 225 L 225
+
Sbjct: 255 V 255
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G + V+++ + GK RG V F S + RKAV +M+ E G+ + + A +
Sbjct: 210 FSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKK- 268
Query: 112 GGRRNMGGGGGVDR--DLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
V+R +L + + L+ I K+++ NLD
Sbjct: 269 -----------VERQAELKQMFEQ---------------LKKERIRGCQGAKLYIKNLDE 302
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR+ F G + V++ + ++G+S+GFG + F +A ++++++N + L
Sbjct: 303 NIDDEKLRKEFSSFGSISRVKV-MQEEGQSKGFGLICFSSSEDAARAMTVMNGRIL 357
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKFLKDCKVFVGRFKSRKDREAE 181
>gi|255568699|ref|XP_002525321.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223535380|gb|EEF37054.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 126
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQ 215
P +K+FVA L + VDEK L++ F G+V V I DKD G+SRGFG V F EAV
Sbjct: 22 PPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVC 81
Query: 216 SISMLNNQNLFER--RITVRMDRVADRLDGPVRLPE 249
+ ++ + L R RI+ +++V GP+ +P
Sbjct: 82 AKDAMDGKALLGRPLRISFALEKVR---GGPIVVPR 114
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 24/172 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---VEDKG 112
G V+++ D++GK +G V F+ + RKAV +M+ + G+++ + A VE +
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQT 274
Query: 113 GRRNMGGGGGVDRD-LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ G D+ + + Q+ S + C +N ++V NLD +
Sbjct: 275 ELKHKFGQMKQDKHKIERVPQDRS------------------VRCKGVN-LYVKNLDDGI 315
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 316 DDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNGK 366
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ K+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEEAERAIEKMNGMFLNDHKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G RD A L + +F N V++ NL +
Sbjct: 171 -------GRFKSRRDRQAELGARAKEFTN---------------------VYIKNLGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N ++L ++I
Sbjct: 203 DDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD +D K L + F G + + ++ D++G S+G+G V F+ EA ++I
Sbjct: 98 VGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
LN+ +F R R DR A+
Sbjct: 157 KMNGMFLNDHKVFVGRFKSRRDRQAE 182
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+SRGFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSRGFGFVCFSSPEEATKAVTEMN 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 VSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD ++ K L + G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G RG A V FQ+ +A+ +M+ K +L +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +D A QN + +F N Y +
Sbjct: 170 --------------GRFKSRKDREAEFQNKAHEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N ++D+++L EVF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + ++AV +M+ + G+ L + A + K
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRA-QKK 268
Query: 112 GGRRNMGGGGGVDRDLSALL-QNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ +L + Q +F G K+++ NLD
Sbjct: 269 AERQA---------ELKQMFEQLKHERFRRCQG----------------AKLYIKNLDET 303
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+D++KLR F G + V++ + ++G+S+GFG + F EA ++++ +N + L
Sbjct: 304 IDDEKLRREFSSFGSISRVKV-MQEEGRSKGFGLICFSSAEEATKAMTEMNGRIL 357
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI- 217
I VF+ NLD +D K L E F GK+ + ++ D G SRG+ V F + + A ++I
Sbjct: 97 IGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIE 155
Query: 218 ----SMLNNQNLFERRITVRMDRVAD 239
++L + LF R R DR A+
Sbjct: 156 EMNGALLKDCRLFVGRFKSRKDREAE 181
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + KAV+ M+ + G+ + + A
Sbjct: 217 FSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRA---- 272
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 273 --QKKVERQAELKRRFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 311
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 312 DDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 360
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 125 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 176
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N V++ N +
Sbjct: 177 -------GRFKCRREREAELGAKAKEFTN---------------------VYIKNFGEDM 208
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D+++L+E F GK +V++ D GKS+GFG V F+ +A +++ +N ++ +F
Sbjct: 209 DDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMF 268
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 269 VGRAQKKVERQAE 281
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 104 VGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIE 162
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 163 KMNGMLLNDRKVFVGRFKCRREREAE 188
>gi|40555782|gb|AAH64588.1| HNRPM protein, partial [Homo sapiens]
Length = 285
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 210 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 269
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 270 MKLSGREIDVRI 281
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 209 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 267
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 268 NGMKLSGREIDVRIDRNA 285
>gi|26333183|dbj|BAC30309.1| unnamed protein product [Mus musculus]
gi|148665853|gb|EDK98269.1| RNA binding motif protein 11, isoform CRA_b [Mus musculus]
Length = 237
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 11 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 70
Query: 222 NQNLFERRITVRM 234
L+ R I V+
Sbjct: 71 GIRLYGRPINVQY 83
>gi|39930581|ref|NP_938044.1| splicing regulator RBM11 [Mus musculus]
gi|81912952|sp|Q80YT9.1|RBM11_MOUSE RecName: Full=Splicing regulator RBM11; AltName: Full=RNA-binding
motif protein 11
gi|29747748|gb|AAH50779.1| Rbm11 protein [Mus musculus]
Length = 238
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I V+
Sbjct: 72 GIRLYGRPINVQY 84
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV + Y DE+ L + F G+V + I +D++ G+S+GFG V ++ EA +I
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 220 LNNQNLFERRITVRM--DRVADRLD 242
L+ Q+L+ RR+ V +R D D
Sbjct: 105 LDGQDLYGRRVGVNFANERPRDGFD 129
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++ K++ G+K+ + + + K
Sbjct: 141 FSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRK 200
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ LG L V+V N +
Sbjct: 201 ERQK-----------------------------------ELGEKAKLFTNVYVKNFGEDM 225
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 226 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCM 285
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 286 YVGRAQKKAERQQELKRKFEQLK 308
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 25/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ P+ +AV ++ E K + + K
Sbjct: 234 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKK 293
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ ++L + + N Y G+N ++V NLD +
Sbjct: 294 AERQ---------QELKRKFEQLKIERLNRYQ---------GVN------LYVKNLDDTI 329
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N
Sbjct: 330 DDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMN 378
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++ D+ G S+G+G V F+ A +SI
Sbjct: 120 VGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIE 179
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 180 KVNGMLLNGKKVYV 193
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH-RFETKGRKLVIKEAVED 110
G +T +++ D G RG V F+ P KAV ++H + +G+ + A +
Sbjct: 517 FKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRA-QK 575
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ ++L + + N Y G+N ++V NLD
Sbjct: 576 KTERQ---------QELKRKFEQYKIERINRYQ---------GVN------LYVKNLDDT 611
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+D+++LR F G +++ ++ +D DG+S+GFG V F P EA ++++ +N
Sbjct: 612 IDDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMN 661
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 35/159 (22%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGG 122
+ D+TG +G V F++ +++ K++ G+K+ + V G
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFV------------GR 482
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
DR+ + LG L V++ N+D V+EK+L E+F+
Sbjct: 483 NDRE-----------------------KELGQQAKLYTNVYIKNIDENVNEKELFEMFKK 519
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
G + + ++ DG SRGFG V F+ P EA ++++ L+
Sbjct: 520 YGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELH 558
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K+++K++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ DGKSRGFG V F+ P A Q++ LN +++ E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T ++++ D GK RG V F+ PD +AV +++ + K + + K
Sbjct: 212 FEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ ++L + + N Y G+N ++V NLD +
Sbjct: 272 AERQ---------QELKRKFEQLKIERLNRYQ---------GVN------LYVKNLDDTI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|74208457|dbj|BAE37519.1| unnamed protein product [Mus musculus]
Length = 366
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 291 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 350
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 351 MKLSGREIDVRI 362
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 290 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 348
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 349 NGMKLSGREIDVRIDRNA 366
>gi|13543181|gb|AAH05758.1| Hnrpm protein, partial [Mus musculus]
Length = 386
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 311 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 370
Query: 575 TRIDGKIIDVTF 586
++ G+ IDV
Sbjct: 371 MKLSGREIDVRI 382
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 310 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 368
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 369 NGMKLSGREIDVRIDRNA 386
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D+ G+ +G V F+ +KAV M+ E GR L + A
Sbjct: 211 FSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ M + R + Q S++ G+N ++V NLD +
Sbjct: 267 --QKRMERQSELKRKFEQIKQERVSRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KGR + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NLD +D K L + F G + + ++ D++G SRG+G
Sbjct: 101 -----------------IFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A ++I+ +N L +R++ V
Sbjct: 143 VHFETHEAANRAIATMNGMLLNDRKVFV 170
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 39/186 (20%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + +I + D G+ +G V F++ + A+ K++ + G+K+ + + V+
Sbjct: 149 GPILSCKIAHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRS---- 203
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
DR L +KF N VFV NLD ++ E++
Sbjct: 204 --------DR----LAATGETKFTN---------------------VFVKNLDPEMAEEE 230
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RM 234
+ E F G + NV I D++ KS+GFG V FD P A ++ +NN L R I V R
Sbjct: 231 INEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRA 290
Query: 235 DRVADR 240
+ A+R
Sbjct: 291 QKKAER 296
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H ST G +T V I+ D+ K +G V F P+ R AV M+ + R + + A +
Sbjct: 234 HFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRA-QK 292
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R + L + + QF + G N ++V NLD
Sbjct: 293 KAEREQI---------LRRQFEEKRME---------QFQKYQGAN------LYVKNLDDS 328
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D++ L++ F G + + ++ D+ G S+GFG V F P EA ++ + N + + I
Sbjct: 329 IDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPI 388
Query: 231 TVRM 234
V M
Sbjct: 389 YVAM 392
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + +IA +DG+S+G+G V F+ A +I
Sbjct: 124 VGNIFIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFVHFETDEAANLAIE 182
Query: 219 MLNNQNLFERRITV-----RMDRVA 238
+N L +++ V R DR+A
Sbjct: 183 KVNGMQLVGKKVFVAKFVKRSDRLA 207
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V ++ AV ++ E G+K+ + A + +
Sbjct: 264 FAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKR 323
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + A+ SK+ G+N +F+ NLD ++
Sbjct: 324 ERTEEL------KKQYEAIRLEKLSKY-------------QGVN------LFIKNLDDQI 358
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL E F+ G + + ++ +D GKS+GFG V F P EA ++I+ +N + + + +
Sbjct: 359 DSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLY 418
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 419 VALAQRKD 426
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 35/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ DD G+ + V +++ + A+ ++ R++ + + V K
Sbjct: 171 FSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKK 230
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ SKF E + N ++V N+D
Sbjct: 231 ------------DRE---------SKF-----------EEMKAN---YTNIYVKNIDLGF 255
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
EK+ E+F GK+ ++ + D+DGKS+GFG V ++ AV ++ LN++ + ++I
Sbjct: 256 TEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIY 315
Query: 232 V 232
V
Sbjct: 316 V 316
>gi|367047383|ref|XP_003654071.1| hypothetical protein THITE_2078523 [Thielavia terrestris NRRL 8126]
gi|347001334|gb|AEO67735.1| hypothetical protein THITE_2078523 [Thielavia terrestris NRRL 8126]
Length = 476
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A Q+++ L
Sbjct: 105 RVYVGNLSYDVKWHHLKDFMRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQQAVATL 164
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R I VR DR A+
Sbjct: 165 SNQNLMGRLIYVREDREAE 183
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 15/190 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V Y ++L G +G IVE+ + + ++AV + GR + ++E E +
Sbjct: 124 MRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQQAVATLSNQNLMGRLIYVREDREAE 183
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GG + F + G+ + +++V+NL + V
Sbjct: 184 PRFGPPGGIPRGGFAGGMGGPYGAGGF------------NAGMAGGGVRQLYVSNLPFNV 231
Query: 172 DEKKLREVFRLAGKVENV---EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ L+++FR A +V V ++ L DG+ +G G V F+ P +A +I N + R
Sbjct: 232 GWQDLKDLFRQAARVGAVIRADVHLGPDGRPKGSGIVVFESPEDARNAIQQFNGYDWQGR 291
Query: 229 RITVRMDRVA 238
+ VR DR A
Sbjct: 292 LLEVREDRFA 301
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ ++V NL + + L E+F GKVE EI + G+SRG G V FD+ A +I+
Sbjct: 375 CDTIYVRNLPWSTSNEDLVELFSTIGKVEQAEIQYEPSGRSRGTGVVRFDNADTAETAIA 434
Query: 219 ML 220
Sbjct: 435 KF 436
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ ST+G V EI + +G+ RG+ +V F + D A+ K ++ GR L
Sbjct: 393 VELFSTIGKVEQAEIQYEPSGRSRGTGVVRFDNADTAETAIAKFQAYQYGGRPL 446
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + K++ K++ G+K+ + + K
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDL 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
E++LR +F GK+ + ++ DGKS+GFG V F+ P A ++ LN + L E +
Sbjct: 204 SEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPL 263
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRRFEALK 286
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 33/178 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
G +T ++++ D GK +G V F+SP+ AV+ ++ E +G+ L + A +
Sbjct: 212 FEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRA-QK 270
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ + R AL +++ G+N ++V NLD
Sbjct: 271 KAERQQ-----ELKRRFEALKMERLNRYQ-------------GVN------LYVKNLDDT 306
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDG-------KSRGFGTVEFDHPVEAVQSISMLN 221
+D+++LR+ F G + + ++ ++++ +S+GFG V F P EA ++++ +N
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMN 364
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 47/191 (24%)
Query: 52 LSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S+ G V + + D T + G A V FQ P +A++ M+ +GR + I + D
Sbjct: 31 FSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDLIRGRPIRIMWSQRD 90
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R+ S GN VF+ NLD
Sbjct: 91 PSLRK--------------------SGVGN---------------------VFIKNLDRS 109
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-----MLNNQNL 225
+D K + + F G + + ++A D++G S+G+G V F+ A +SI +LN + +
Sbjct: 110 IDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKV 169
Query: 226 FERRITVRMDR 236
+ R R +R
Sbjct: 170 YVGRFIPRKER 180
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K+++K++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L S++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLSRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++++LR F G + + ++ ++ DG+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 NDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|145354241|ref|XP_001421399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 288
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 34/189 (17%)
Query: 50 SHLSTVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
SH ++ G +V E+ G+ +G A+V+F +P+ + A+ +MH E +GR ++++ V
Sbjct: 130 SHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIVR--V 187
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E G + SA ++ N+ GL ++ V NL
Sbjct: 188 ERPGAGQK-----------SARVETRPE---NSSGL----------------QIVVRNLP 217
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
+ + LR+VF+ G V N D G+S+G+GTV F+ +A +I N L
Sbjct: 218 WTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNGVELEH 277
Query: 228 RRITVRMDR 236
R + +++DR
Sbjct: 278 RPMQIKLDR 286
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V N+ + + LRE+F G V V+I + G+SRG+G VEF+ EA +++ +
Sbjct: 10 RLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAVTRM 69
Query: 221 NNQNLFERRITVRMDR 236
+ L +R ITVR D+
Sbjct: 70 DGTPLGDRTITVREDK 85
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 26/186 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G VT V+I G+ RG +VEF S + AV +M R + ++E
Sbjct: 29 FAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAVTRMDGTPLGDRTITVRE----- 83
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D+ + + G +P + G C + + NL ++
Sbjct: 84 ------------DKAPTKAAGGAKKASASVLGDAP----AGGDGC----RCYFGNLAWET 123
Query: 172 DEKKL-REVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
E+ L V E+A G+S+G+ V+F P EA +I ++N + R I
Sbjct: 124 SEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMHNSEIQGRSI 183
Query: 231 TVRMDR 236
VR++R
Sbjct: 184 IVRVER 189
>gi|114683624|ref|XP_531391.2| PREDICTED: splicing regulator RBM11 [Pan troglodytes]
Length = 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|169234630|ref|NP_658983.3| splicing regulator RBM11 [Homo sapiens]
gi|9978670|sp|P57052.1|RBM11_HUMAN RecName: Full=Splicing regulator RBM11; AltName: Full=RNA-binding
motif protein 11
gi|7768750|dbj|BAA95545.1| RBM11 [Homo sapiens]
gi|119630467|gb|EAX10062.1| RNA binding motif protein 11, isoform CRA_c [Homo sapiens]
Length = 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|82752588|ref|XP_727361.1| U1 small nuclear ribonucleoprotein 70 kDa [Plasmodium yoelii yoelii
17XNL]
gi|23483169|gb|EAA18926.1| u1 small nuclear ribonucleoprotein 70 kDa [Plasmodium yoelii
yoelii]
Length = 391
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ L Y+V+EKKL++ F GK++ V++ D+D K RG+ +EF+H + ++ +
Sbjct: 100 LFIGRLSYEVNEKKLKKEFETYGKIKYVKVIYDQDKKPRGYAFIEFEHTKSVTDAYNLAD 159
Query: 222 NQNLFERRITVRMDRV 237
+ + RRI V M+R
Sbjct: 160 GKKIENRRILVDMERA 175
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK----EA 107
T G + YV+++ D KPRG A +EF+ V A N + + R++++
Sbjct: 118 FETYGKIKYVKVIYDQDKKPRGYAFIEFEHTKSVTDAYNLADGKKIENRRILVDMERART 177
Query: 108 VEDKGGRRNMGGGGGVDR 125
V++ RR +GGG G R
Sbjct: 178 VKNWVPRR-LGGGKGPSR 194
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 26/168 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + RKAV++M+ E G+++ + A + K R+
Sbjct: 260 GPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRA-QKKVERQ 318
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 319 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 354
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 355 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM
Sbjct: 164 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKM------------------- 203
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ +L N+ F + + LG V++ N +
Sbjct: 204 ----------------NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 247
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 248 DDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIY 307
Query: 232 V 232
V
Sbjct: 308 V 308
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 143 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 201
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 202 KMNGMLLNDRKVFVGRFKSRKEREAE 227
>gi|402862668|ref|XP_003895669.1| PREDICTED: putative RNA-binding protein 11 [Papio anubis]
Length = 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>gi|367032346|ref|XP_003665456.1| hypothetical protein MYCTH_2309198 [Myceliophthora thermophila ATCC
42464]
gi|347012727|gb|AEO60211.1| hypothetical protein MYCTH_2309198 [Myceliophthora thermophila ATCC
42464]
Length = 382
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A Q+++ L
Sbjct: 13 RVYVGNLSYDVKWHHLKDFMRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQQAVATL 72
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R I VR DR A+
Sbjct: 73 SNQNLMGRLIYVREDREAE 91
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 24/194 (12%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V Y ++L G +G IVE+ + + ++AV + GR + ++E
Sbjct: 32 MRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQQAVATLSNQNLMGRLIYVRE----- 86
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI----NKVFVANL 167
DR+ +G G N + +++V+NL
Sbjct: 87 ------------DREAEPRFGPPGGIPRGGFGGGMGGGPYGGFNPGMAGGGGRQLYVSNL 134
Query: 168 DYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
+ V + L+++FR A G V ++ + DG+ +G G V F+ P +A +I N +
Sbjct: 135 PFNVGWQDLKDLFRQAARTGAVIRADVHIGPDGRPKGSGIVVFESPDDARNAIQQFNGYD 194
Query: 225 LFERRITVRMDRVA 238
R + VR DR A
Sbjct: 195 WQGRILEVREDRFA 208
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ + V NL + L E+F GKVE EI + G+SRG G V FD+ A +I+
Sbjct: 282 DTIHVRNLPWSTSNDDLVELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDNADTAETAIAK 341
Query: 220 L 220
Sbjct: 342 F 342
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ ST+G V EI + +G+ RGS +V F + D A+ K ++ GR L
Sbjct: 299 VELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDNADTAETAIAKFQGYQYGGRPL 352
>gi|297707634|ref|XP_002830605.1| PREDICTED: putative RNA-binding protein 11 [Pongo abelii]
Length = 281
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + D+ GK +G V F++ D + AV+++H + KG+KL + A + K
Sbjct: 246 FTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARA-QKK 304
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R A +KF G+N +++ N+
Sbjct: 305 SEREEE-----LRRSYEAAKNEKLAKFQ-------------GVN------LYLKNIPESY 340
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + +I G SRGFG V + P EA +++S +N + L R +
Sbjct: 341 DDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLY 400
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 401 VALAQRKD 408
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+ N+D V +++ ++F GK+ + + D+DGKS+GFG V F++ EA ++ L+
Sbjct: 228 VYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELH 287
Query: 222 N-----QNLFERRITVRMDR 236
+ Q LF R + +R
Sbjct: 288 DSDFKGQKLFVARAQKKSER 307
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G+V VE++ D TG+ RG V + + V A + + +E +GR+L +
Sbjct: 114 GNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNS-------- 165
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFG-NTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
G R+ S NS+ G NT P+ G N N+++V NL + VD+
Sbjct: 166 ----GPPPARRENSNFRGENSNFRGENTNFRGPR----GGANLNSTNRIYVGNLSWGVDD 217
Query: 174 KKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L +F GKV + D++ G+SRGFG V ++ E ++I L+ +L R I V
Sbjct: 218 LALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRV 277
Query: 233 RM 234
M
Sbjct: 278 TM 279
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL + VD L +F AG VE VE+ DK G+SRGFG V E +
Sbjct: 91 KLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQ 150
Query: 220 LNNQNLFERRITV 232
N L R++ V
Sbjct: 151 FNGYELEGRQLRV 163
>gi|397496846|ref|XP_003819236.1| PREDICTED: putative RNA-binding protein 11 [Pan paniscus]
Length = 281
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|440467309|gb|ELQ36539.1| RNP domain-containing protein [Magnaporthe oryzae Y34]
gi|440478902|gb|ELQ59700.1| RNP domain-containing protein [Magnaporthe oryzae P131]
Length = 500
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P +VFV NL Y VD ++++++FR A G V +I + D + +G G V +DHP +A
Sbjct: 233 PQGRQVFVNNLPYNVDWREMKDLFRQAARVGGVHRADIHMTPDNRPKGSGIVIYDHPDDA 292
Query: 214 VQSISMLNNQNLFERRITVRMD 235
+I N + R I VRMD
Sbjct: 293 NNAIQQFNGYEWYGRTIEVRMD 314
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L E+F GKVE EI + G+SRG G V FD+ A SI+
Sbjct: 402 IYVRNLPWSTSNEDLVELFTTIGKVEQAEIQYEPSGRSRGSGVVRFDNAETAETSIAKF 460
>gi|109065778|ref|XP_001083260.1| PREDICTED: putative RNA-binding protein 11 [Macaca mulatta]
gi|355560395|gb|EHH17081.1| RNA-binding motif protein 11 [Macaca mulatta]
Length = 281
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>gi|355747455|gb|EHH51952.1| RNA-binding motif protein 11 [Macaca fascicularis]
Length = 281
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 15 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 72
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 73 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 107
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 108 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 165
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V++ N +VD++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 63
Query: 222 NQNL 225
+ +
Sbjct: 64 GKEI 67
>gi|332229296|ref|XP_003263827.1| PREDICTED: splicing regulator RBM11 [Nomascus leucogenys]
Length = 281
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|410970206|ref|XP_003991579.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulator RBM11 [Felis
catus]
Length = 238
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|237832129|ref|XP_002365362.1| Gbp1p protein, putative [Toxoplasma gondii ME49]
gi|211963026|gb|EEA98221.1| Gbp1p protein, putative [Toxoplasma gondii ME49]
gi|221486778|gb|EEE25024.1| gbp1p protein, putative [Toxoplasma gondii GT1]
gi|221506480|gb|EEE32097.1| gbp1p protein, putative [Toxoplasma gondii VEG]
Length = 293
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VF++NL ++ + L+++FR G V ++ DG+S+G GTV F P A +++ M
Sbjct: 216 QVFISNLPWRTSWQDLKDLFRECGDVVRADVMTMPDGRSKGVGTVLFSTPEGAQRAVEMF 275
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I+VR+DRVA
Sbjct: 276 NEYMLDGRPISVRIDRVA 293
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV + L++ + AG+V ++ D G+S+G G VE+ + +A ++I L
Sbjct: 23 RVYVGNLSWKVRWQHLKDHMKQAGEVLRADVFEDFQGRSKGCGIVEYTNVEDAQKAIKEL 82
Query: 221 NNQNLFERRITVRMDR 236
+ LF+R I VR DR
Sbjct: 83 TDTELFDRLIFVREDR 98
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP +WQ+L+D FR CGD+ A++ + KG +G V F + A+RA++M
Sbjct: 217 VFISNLPWRTSWQDLKDLFRECGDVVRADVMTMPDGRSKG-VGTVLFSTPEGAQRAVEMF 275
Query: 573 DRTRIDGKIIDV 584
+ +DG+ I V
Sbjct: 276 NEYMLDGRPISV 287
>gi|213404018|ref|XP_002172781.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212000828|gb|EEB06488.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 485
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y V + L+++FR AG V ++ ++ +G+SRG G V + EA +I M
Sbjct: 143 QLFVGNLPYSVRWQDLKDLFRKAGNVVRADVQMNHEGRSRGNGIVLMETVQEAQMAIRMF 202
Query: 221 NNQNLFERRITVRMDRVA 238
++ + R I VR+DR A
Sbjct: 203 DSTDFMGRMIEVRLDRFA 220
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 7/189 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK-EAVEDKGG 113
G+V ++ + G+ RG+ IV ++ + A+ + GR + ++ + GG
Sbjct: 165 AGNVVRADVQMNHEGRSRGNGIVLMETVQEAQMAIRMFDSTDFMGRMIEVRLDRFARGGG 224
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNT-----YGLSPQ-FLESLGINCPLINKVFVANL 167
R M G A + G Y P F++ N P + + NL
Sbjct: 225 RSGMAFSGPPAGAYGAGPAAAAPYMGQYGGPAGYNAGPNDFVDRAYANGPPSPIIHIGNL 284
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
+ ++ L ++F GK+E IA + G+SRGFG V+F EA +I LN
Sbjct: 285 PWLTVDQDLLDLFNSFGKIERAAIAYEPSGRSRGFGVVQFQTTPEAASAIEKLNGYVYGN 344
Query: 228 RRITVRMDR 236
R + + R
Sbjct: 345 RPLQISYAR 353
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP ++ WQ+L+D FR G++ A++ + +G+ G+V ++ A+ AI M
Sbjct: 144 LFVGNLPYSVRWQDLKDLFRKAGNVVRADVQMNHEGRSRGN-GIVLMETVQEAQMAIRMF 202
Query: 573 DRTRIDGKIIDV 584
D T G++I+V
Sbjct: 203 DSTDFMGRMIEV 214
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|328350511|emb|CCA36911.1| Polyadenylate-binding protein 1 [Komagataella pastoris CBS 7435]
Length = 413
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G + YV+I D G+ +G V F+ P+ A+ ++ F+ GRKL ++E V G R
Sbjct: 214 FGGIDYVDIRLDRLGRSKGFGTVVFKKPEDSAIALKELQGFQLDGRKLDLREGV---GSR 270
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R L L+ N E + N P + +F++NL + +
Sbjct: 271 RRDRTTRETTYPLRKTLRLN---------------ERIYANGPPSSTIFISNLPWATTDD 315
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L E+ G + EI LD++G+S G G VEF + A +I+ L+N N R + +
Sbjct: 316 DLYELVESIGPAKRAEIQLDENGRSSGNGIVEFTDSLTAESAITKLDNYNYGNRDLCL 373
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 53/192 (27%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAV---------NKMHRFETKGRK 101
H S++G+V +I+ + G+ RG VEF +P + + + +K FET+ R+
Sbjct: 117 HFSSIGEVHRADIVTE-RGRSRGMGTVEFITPFFLDREIFVRQDYPPPDKNRVFETRPRR 175
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ E++ R G +
Sbjct: 176 ----DTPENRDYREPPRDG---------------------------------------TE 192
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL ++ K L ++F G ++ V+I LD+ G+S+GFGTV F P ++ ++ L
Sbjct: 193 IFVGNLPFRTQRKDLADLFGRFGGIDYVDIRLDRLGRSKGFGTVVFKKPEDSAIALKELQ 252
Query: 222 NQNLFERRITVR 233
L R++ +R
Sbjct: 253 GFQLDGRKLDLR 264
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NL ++ ++L++ F G+V +I ++ G+SRG GTVEF P
Sbjct: 100 VFIGNLPFQCSWQQLKDHFSSIGEVHRADIVTER-GRSRGMGTVEFITPF---------- 148
Query: 222 NQNLFERRITVRMD 235
+R I VR D
Sbjct: 149 ---FLDREIFVRQD 159
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|390478095|ref|XP_003735419.1| PREDICTED: putative RNA-binding protein 11-like [Callithrix
jacchus]
Length = 238
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|345317198|ref|XP_001516207.2| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like, partial
[Ornithorhynchus anatinus]
Length = 423
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 348 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 407
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 408 IKLSGREIDV 417
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 347 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 405
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 406 NGIKLSGREIDVRIDRNA 423
>gi|303284108|ref|XP_003061345.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla
CCMP1545]
Length = 301
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 30/187 (16%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H S+VG V E+ G+ +G +V+F+SP A+ +H + +GR ++++
Sbjct: 142 HFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIATLHNSDLQGRSIIVR----- 196
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
L G P+ L ++ V NL +
Sbjct: 197 ----------------LERAGGATKGPGGGANAGRPEASSGL--------QIVVRNLPWT 232
Query: 171 VDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ LR+VF+ G V + D G+S+G+GTV F+ +A +I N L R
Sbjct: 233 TTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELESRP 292
Query: 230 ITVRMDR 236
+ +++DR
Sbjct: 293 MQIKLDR 299
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 13/185 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S+ G +T+V+I G+ RG IVE+ S + A+ ++ R L ++E D
Sbjct: 28 FSSCGAITHVDIPKGRQGRSRGYGIVEYSSAAEAQAAIAQLEGHTLGDRNLTVRE---DN 84
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ GN G +P + G C + N + + V
Sbjct: 85 APTKTA-------NSGGGSKSGGGRGSGNVMGETPA---AEGCRCYIGNLAWETTAESLV 134
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ F G V N E+A G+S+G+G V+F+ P A +I+ L+N +L R I
Sbjct: 135 GAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIATLHNSDLQGRSII 194
Query: 232 VRMDR 236
VR++R
Sbjct: 195 VRLER 199
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+++V NL + D +LR +F G + +V+I + G+SRG+G VE+ EA +I+
Sbjct: 8 NRLYVGNLPWSTDVDELRAIFSSCGAITHVDIPKGRQGRSRGYGIVEYSSAAEAQAAIAQ 67
Query: 220 LNNQNLFERRITVRMD 235
L L +R +TVR D
Sbjct: 68 LEGHTLGDRNLTVRED 83
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV L Y DE L+E F G V + +D+D G+SRGFG + F EA ++
Sbjct: 41 KLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQA 100
Query: 220 LNNQNLFERRITV 232
++ Q+L RRI V
Sbjct: 101 MDGQDLHGRRIRV 113
>gi|431838638|gb|ELK00569.1| Putative RNA-binding protein 11 [Pteropus alecto]
Length = 238
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|254565999|ref|XP_002490110.1| Poly(A+) RNA-binding protein, involved in the export of mRNAs from
the nucleus to the cytoplasm [Komagataella pastoris
GS115]
gi|238029906|emb|CAY67829.1| Poly(A+) RNA-binding protein, involved in the export of mRNAs from
the nucleus to the cytoplasm [Komagataella pastoris
GS115]
Length = 445
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G + YV+I D G+ +G V F+ P+ A+ ++ F+ GRKL ++E V G R
Sbjct: 246 FGGIDYVDIRLDRLGRSKGFGTVVFKKPEDSAIALKELQGFQLDGRKLDLREGV---GSR 302
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R L L+ N E + N P + +F++NL + +
Sbjct: 303 RRDRTTRETTYPLRKTLRLN---------------ERIYANGPPSSTIFISNLPWATTDD 347
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L E+ G + EI LD++G+S G G VEF + A +I+ L+N N R + +
Sbjct: 348 DLYELVESIGPAKRAEIQLDENGRSSGNGIVEFTDSLTAESAITKLDNYNYGNRDLCL 405
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H S++G+V +I+ + G+ RG VEF + + V+ A+ K+ R++ +++
Sbjct: 136 HFSSIGEVHRADIVTE-RGRSRGMGTVEFVNEEDVKLAIEKLDHTIFLDREIFVRQDYPP 194
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R + + Y P+ ++FV NL ++
Sbjct: 195 PDKNR-----------VFETRPRRDTPENRDYREPPR----------DGTEIFVGNLPFR 233
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
K L ++F G ++ V+I LD+ G+S+GFGTV F P ++ ++ L L R++
Sbjct: 234 TQRKDLADLFGRFGGIDYVDIRLDRLGRSKGFGTVVFKKPEDSAIALKELQGFQLDGRKL 293
Query: 231 TVR 233
+R
Sbjct: 294 DLR 296
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NL ++ ++L++ F G+V +I ++ G+SRG GTVEF + + +I L+
Sbjct: 119 VFIGNLPFQCSWQQLKDHFSSIGEVHRADIVTER-GRSRGMGTVEFVNEEDVKLAIEKLD 177
Query: 222 NQNLFERRITVRMD 235
+ +R I VR D
Sbjct: 178 HTIFLDREIFVRQD 191
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMD 573
V + NLP +WQ+L+D F + G++ A+I + +G +G V F +E K AI+ +D
Sbjct: 119 VFIGNLPFQCSWQQLKDHFSSIGEVHRADIVTERGRSRG-MGTVEFVNEEDVKLAIEKLD 177
Query: 574 RT 575
T
Sbjct: 178 HT 179
>gi|351701345|gb|EHB04264.1| Putative RNA-binding protein 11 [Heterocephalus glaber]
Length = 245
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 145 SPQFLESL-GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGF 202
SP F +++ ++ K+F+ + Y DE+ LRE F G+V + I +D++ G+SRGF
Sbjct: 26 SPSFFQAIRSMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGF 85
Query: 203 GTVEFDHPVEAVQSISMLNNQNLFERRITV 232
G + + EA +I L+ Q+L R I V
Sbjct: 86 GFITYTSVEEASSAIQALDGQDLHGRPIRV 115
>gi|254582829|ref|XP_002499146.1| ZYRO0E04928p [Zygosaccharomyces rouxii]
gi|238942720|emb|CAR30891.1| ZYRO0E04928p [Zygosaccharomyces rouxii]
Length = 409
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK----- 105
+ S +G+V +I+ G RG VEF + + V +A+ + R++ ++
Sbjct: 122 YFSQIGNVVRADIITS-RGHHRGMGTVEFTNTEDVDEAIRRFDGAYFMDRQIFVRQDNPP 180
Query: 106 ------EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI 159
E V+++ R G S+ N ++ GN+ G I
Sbjct: 181 PESNSHERVQERRKERTFAGA-------SSGSNNGTNAGGNSNGP--------------I 219
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+VFVANL Y ++ + L+++F+ G V ++ L ++G SRGFGTV + P E +I+
Sbjct: 220 YEVFVANLPYSINWQALKDMFKECGNVIRADVELARNGYSRGFGTVIYGTPEEMQDAIAR 279
Query: 220 LNNQNLFERRITVRMDR 236
+ L R + VR R
Sbjct: 280 FHGYELEGRILEVREGR 296
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G+V ++ G RG V + +P+ ++ A+ + H +E +GR L ++E
Sbjct: 240 FKECGNVIRADVELARNGYSRGFGTVIYGTPEEMQDAIARFHGYELEGRILEVRE----- 294
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
GR++ VD + ++S+ + +F E + N ++ ANL +
Sbjct: 295 -GRKS-----AVDPPPQEPIDDSSN-------FNSEFTEGVTDGGERNNLIYCANLPFST 341
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
L ++F GK+ N E+ D G G VE+++ +A I LNN N
Sbjct: 342 ATSDLYDLFETIGKLNNAELRFDSKGAPTGVAIVEYENVEDADVCIDRLNNYNY 395
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
+N N VFV NL Y + L++ F G V +I + G RG GTVEF + +
Sbjct: 97 VNRNYANSVFVGNLTYDCAPEDLKDYFSQIGNVVRADIITSR-GHHRGMGTVEFTNTEDV 155
Query: 214 VQSISMLNNQNLFERRITVRMD 235
++I + +R+I VR D
Sbjct: 156 DEAIRRFDGAYFMDRQIFVRQD 177
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP +I WQ L+D F+ CG++ A+++ +G G V + + + AI
Sbjct: 222 VFVANLPYSINWQALKDMFKECGNVIRADVELARNGYSRG-FGTVIYGTPEEMQDAIARF 280
Query: 573 DRTRIDGKIIDV 584
++G+I++V
Sbjct: 281 HGYELEGRILEV 292
>gi|148665852|gb|EDK98268.1| RNA binding motif protein 11, isoform CRA_a [Mus musculus]
Length = 254
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T V ++ D GK + V F++P+ KAV+ ++ G+K KE K ++
Sbjct: 243 GTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALN-----GKKFDDKEWYVGKAQKK 297
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ +R++ S+F T + Q + G+N ++V NLD +D++K
Sbjct: 298 S-------EREVEL-----KSRFEQT--VKEQVDKYQGVN------LYVKNLDDTIDDEK 337
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+E+F G + + ++ D G SRG G V F P EA +++ +N + + + + V +
Sbjct: 338 LKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAL 396
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S+ G + +I D +G+ +G V++ S + + A++K++ +++ + + +
Sbjct: 148 FSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQ 207
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DRD + + +KF N Y V NL
Sbjct: 208 ------------DRDS----EMSKTKFNNIY---------------------VKNLSDST 230
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E LR+ F G + +V + D DGKS+ FG V F++P +A +++ LN + ++
Sbjct: 231 SEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWY 290
Query: 232 V 232
V
Sbjct: 291 V 291
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L E F G + + +IA D G+S+G+G V++D A +I LN
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLN 189
Query: 222 NQNLFERRITV 232
+ ++++ V
Sbjct: 190 GMLMNDKQVYV 200
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISML 220
++V +LD V + +L ++F G+V +V + D G+S G+G V + + +A ++I +L
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVL 101
Query: 221 NNQNLFERRITVRMDR 236
N L + I V + R
Sbjct: 102 NFTPLNNKTIRVSVSR 117
>gi|348504948|ref|XP_003440023.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like
[Oreochromis niloticus]
Length = 701
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+D F CG +++A+IK GK G+VRFD+ TA+RA M+
Sbjct: 626 IFVRNLPFDFTWKMLKDTFNACGMVQYADIKMENGKSKGCGVVRFDNPETAERACRTMNG 685
Query: 575 TRIDGKIIDV 584
R++G+ IDV
Sbjct: 686 YRLNGREIDV 695
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
VG+VTYVE L D GK RG A+VEF++ +L++KAV K+++ GR L +KE
Sbjct: 92 VGEVTYVEHLMDAEGKSRGCAVVEFRTEELMKKAVEKVNKHNLNGRPLKVKE 143
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V+ +I ++ +GKS+G G V FD+P A ++ +
Sbjct: 625 QIFVRNLPFDFTWKMLKDTFNACGMVQYADIKME-NGKSKGCGVVRFDNPETAERACRTM 683
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 684 NGYRLNGREIDVRIDRNA 701
>gi|149578821|ref|XP_001507009.1| PREDICTED: RNA-binding protein 7-like [Ornithorhynchus anatinus]
Length = 273
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD KV E+ L E+F AG V NV+I DKDGK + F V F H +++LN
Sbjct: 12 LFVGNLDTKVTEELLFELFHQAGPVINVKIPKDKDGKPKQFAFVNFKHEESVPYGMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|358394283|gb|EHK43676.1| hypothetical protein TRIATDRAFT_300154 [Trichoderma atroviride IMI
206040]
Length = 505
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + ++AV ++ GR + ++E E +
Sbjct: 120 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVAQLSNQNLMGRLVYVREDREAE 179
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSK----FGNTYGLSPQFLESLGINCPLINK-VFVAN 166
R +G GG +R + F + Y P G + ++VAN
Sbjct: 180 P--RFIGATGGANRGGFSGGGGGGGGGMPGFSHGYAGGPPGGGGGGGGGGGGGRQIYVAN 237
Query: 167 LDYKVDEKKLREVFRLAGKVENV---EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
L Y V + L+++FR A ++ V ++ L DG+ +G G V F++P +A +I N
Sbjct: 238 LPYTVGWQDLKDLFRQAARIGGVMRADVHLGADGRPKGSGIVVFENPEDARNAIQQFNGY 297
Query: 224 NLFERRITVRMD 235
R + VR D
Sbjct: 298 EWQGRLLEVRED 309
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A Q+++ L
Sbjct: 101 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVAQL 160
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 161 SNQNLMGRLVYVREDREAE 179
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
++V NL + L E+F GKVE EI + G+SRG G V FD
Sbjct: 407 IYVRNLPWSTSNDDLVELFTTIGKVEQAEIQYEPSGRSRGSGVVRFD 453
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 31/202 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
DA+L + S G +T V I+ + D K +G V ++ + + AVN ++ E G+
Sbjct: 237 DAALNDM--FSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKT 294
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
L + A + K R + + AL +K+ GIN
Sbjct: 295 LFVARA-QKKAERE-----AELKQRYDALRLERINKY-------------QGIN------ 329
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +DE K+R F G + +V+I D+ GKSRGFG + F EA ++++ +N
Sbjct: 330 LYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMN 389
Query: 222 NQNL--FERRITVRM-DRVADR 240
Q + F + + V + R DR
Sbjct: 390 GQTIQGFPKPLYVALAQRAEDR 411
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K L + F G + + ++ D++G S+G+G V ++ A +I+
Sbjct: 132 LGNVFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIA 190
Query: 219 -----MLNNQNLFERRITVRMDRV 237
++N + +F R +RV
Sbjct: 191 KVNGMVINGKQVFVGIFVPRKERV 214
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 39/191 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V +++ + A+ K++ G+++ +
Sbjct: 153 FSAFGNILSCKVVTDENGS-KGYGFVHYETQEAAETAIAKVNGMVINGKQVFV------- 204
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G V R L +KF N VFV NL
Sbjct: 205 --------GIFVPRKERVELGEGVTKFTN---------------------VFVKNLPEDT 235
Query: 172 DEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ L ++F GK+ +V I D KS+GFG V ++ +A +++ LN L + +
Sbjct: 236 TDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTL 295
Query: 231 TV-RMDRVADR 240
V R + A+R
Sbjct: 296 FVARAQKKAER 306
>gi|403286148|ref|XP_003934367.1| PREDICTED: putative RNA-binding protein 11 [Saimiri boliviensis
boliviensis]
Length = 237
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|393243769|gb|EJD51283.1| hypothetical protein AURDEDRAFT_111866 [Auricularia delicata
TFB-10046 SS5]
Length = 535
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL + + L+++FR AG V ++ L DG+SRG GTV F + +A ++ M N
Sbjct: 45 LFVGNLPFHCQWQDLKDLFRQAGAVLRADVVLGPDGRSRGHGTVSFSNDSDAEHAVRMFN 104
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAP 264
R + V D+ + P G G GLG + +P
Sbjct: 105 GYEFNGRPLKVHFDKYTGQ-----NTPAG----GSGLGPSASP 138
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D G+ RG V F+ + +KAV+ M+ E +G+ L + A + +
Sbjct: 274 FSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRA-QKR 332
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ + R + Q +++ G+N ++V NLD +
Sbjct: 333 AERQS-----ELKRRFEQVKQERQNRYQ-------------GVN------LYVKNLDDSI 368
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++++L+EVF G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 369 NDERLKEVFSAYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMN 417
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 47/195 (24%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI-----KE 106
ST G + +++ ++ G RG V F++ + +KA+N M+ RK+ + ++
Sbjct: 182 FSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ 240
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E + G R +G F N V+V N
Sbjct: 241 KREAELGARALG-------------------FTN---------------------VYVKN 260
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L +DE+ L+++F GK+++V++ D +G+SRGFG V F+ EA +++ +N + +
Sbjct: 261 LHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVR 320
Query: 227 ERRITV-RMDRVADR 240
+ + V R + A+R
Sbjct: 321 GQLLYVGRAQKRAER 335
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY++ S +G + + + D T + G A + FQ P +A++ M+ KG+
Sbjct: 87 EAMLYEM--FSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQP 144
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 145 IRIMWSHRDPGLRK--------------------SGMGN--------------------- 163
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F G + + ++ ++ G SRGFG V F+ A ++I+ +N
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 222
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 223 GMLLNDRKVFV 233
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D+ G RG V F+ + +KAVN M+ GR L + A K
Sbjct: 196 FSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRA--QK 253
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R G + R + Q +++ G+N ++V NLD +
Sbjct: 254 RTERQ----GELKRRFEQMKQERVNRYQ-------------GVN------LYVKNLDDVI 290
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N +
Sbjct: 291 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 341
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG ++V N + VD++ L E+F GK
Sbjct: 143 MNGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEEDVDDQCLEELFSEFGKT 202
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+V++ +D++G SRGFG V F+ EA ++++ +N + L R + V
Sbjct: 203 LSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYV 248
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 87/168 (51%), Gaps = 26/168 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 382 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 440
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 441 TE-----LKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 476
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 477 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 523
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 286 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 337
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 338 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 369
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 370 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 429
Query: 232 V 232
V
Sbjct: 430 V 430
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 265 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 323
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 324 KMNGMLLNDRKVFVGRFKSRKEREAE 349
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 235 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 293
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 294 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 329
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 330 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 374
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 139 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 190
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 191 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 222
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 223 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 282
Query: 232 V 232
V
Sbjct: 283 V 283
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 118 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 176
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 177 KMNGMLLNDRKVFVGRFKSRKEREAE 202
>gi|426217269|ref|XP_004002876.1| PREDICTED: splicing regulator RBM11 [Ovis aries]
Length = 246
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSCEPA 95
>gi|291400883|ref|XP_002716809.1| PREDICTED: RNA binding motif protein 7-like [Oryctolagus cuniculus]
Length = 238
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|358370208|dbj|GAA86820.1| RNA splicing factor (Pad-1) [Aspergillus kawachii IFO 4308]
Length = 571
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 49 ISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL----V 103
I+ VG V +I+ D +G+ +G VEF+S D V A+ + G+KL +
Sbjct: 198 IAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKSEDAVAPAI------QLTGQKLLGIPI 251
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
I + E + R+ +N + GN + ++++
Sbjct: 252 IAQLTEAEKNRQ---------------ARNPEASSGNNHAAP-------------FHRLY 283
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V N+ + + E L+ VF G++E V++ D+ G+SRG+G V+F P +A +++ +N
Sbjct: 284 VGNIHFSITESDLQNVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGF 343
Query: 224 NLFERRITV 232
+L R I V
Sbjct: 344 DLAGRAIRV 352
>gi|410082555|ref|XP_003958856.1| hypothetical protein KAFR_0H03110 [Kazachstania africana CBS 2517]
gi|372465445|emb|CCF59721.1| hypothetical protein KAFR_0H03110 [Kazachstania africana CBS 2517]
Length = 441
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED- 110
G+V ++ D G+ RG V F + + +R+A++ + +E +GR+L ++E +
Sbjct: 262 FKPCGNVLRADVELDHVGRSRGFGTVLFSNQEDMRRAIDDYNGYEIEGRRLDVREGYRNS 321
Query: 111 KGGRRNMGGGGGVDRD---LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
+ G RN G ++D A Q+NS+ F E N ++ +NL
Sbjct: 322 RNGNRN--GADETNKDSNETEAQAQSNST---------VDFTEGYISGDERNNFIYCSNL 370
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+ D L ++F GKV N E+ D + G +E+++ +A I LNN N
Sbjct: 371 PFSTDRSDLYDLFETIGKVINAELRYDSANQPTGVAVIEYENIEDADVCIERLNNYNY 428
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 15/187 (8%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S +G+V +I+ G RG VEF + D V +A+ + + R++ +++
Sbjct: 139 FSQIGEVVRADIITS-RGHHRGMGTVEFTNNDDVTEAIRQYDGSDFMERQIFVRQDNPPP 197
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN-----KVFVAN 166
RR RD A + S+ + + N P ++FVAN
Sbjct: 198 ESRRERVPPSNDHRDRYAASNDRHSR---------PYDRASSRNTPSDGNYDGFEIFVAN 248
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L + V+ + L+++F+ G V ++ LD G+SRGFGTV F + + ++I N +
Sbjct: 249 LPFSVNWQALKDMFKPCGNVLRADVELDHVGRSRGFGTVLFSNQEDMRRAIDDYNGYEIE 308
Query: 227 ERRITVR 233
RR+ VR
Sbjct: 309 GRRLDVR 315
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
+N N +FV NL Y LR+ F G+V +I + G RG GTVEF + +
Sbjct: 113 VNRNYSNSIFVGNLTYDCTPDDLRDFFSQIGEVVRADIITSR-GHHRGMGTVEFTNNDDV 171
Query: 214 VQSISMLNNQNLFERRITVRMD 235
++I + + ER+I VR D
Sbjct: 172 TEAIRQYDGSDFMERQIFVRQD 193
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP ++ WQ L+D F+ CG++ A++ + +G G V F ++ +RAID
Sbjct: 244 IFVANLPFSVNWQALKDMFKPCGNVLRADVELDHVGRSRG-FGTVLFSNQEDMRRAIDDY 302
Query: 573 DRTRIDGKIIDV 584
+ I+G+ +DV
Sbjct: 303 NGYEIEGRRLDV 314
>gi|302830149|ref|XP_002946641.1| hypothetical protein VOLCADRAFT_103054 [Volvox carteri f.
nagariensis]
gi|300268387|gb|EFJ52568.1| hypothetical protein VOLCADRAFT_103054 [Volvox carteri f.
nagariensis]
Length = 1972
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
I KVFVA L + VD ++L+ FR AG V + DK+ G S+G G VEF+ +A +I
Sbjct: 24 IKKVFVAGLPFNVDWQELKRYFRTAGTVVYAGVMKDKEKGTSKGCGVVEFETAEQAQNAI 83
Query: 218 SMLNNQNLFERRITVRMDR---VADRLDGP 244
+ N + R I VR+D+ + DGP
Sbjct: 84 QLFNGTQMAGRTIYVRLDQDNAIGGMGDGP 113
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
++FV NL ++ + + L++ F+ G V +I +DK+ KS+G G VEF++P +A+ ++
Sbjct: 436 RLFVNNLSFETEWRALKDHFKQCGPVAYSKIIVDKETNKSKGCGIVEFENPRDAMMAMQK 495
Query: 220 LNNQNLFERRITVRMDR 236
L+ L R I VR D+
Sbjct: 496 LDGSILDGRTIHVREDQ 512
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 24/224 (10%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
H G V Y +I+ D +T K +G IVEF++P A+ K+ GR + ++E +
Sbjct: 454 HFKQCGPVAYSKIIVDKETNKSKGCGIVEFENPRDAMMAMQKLDGSILDGRTIHVREDQQ 513
Query: 110 D----KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
+ G G G + + + + N P+ ++ C ++ V
Sbjct: 514 EGMPPPGMGPMGGMGPMMGGGGGRGGRGDRERRANA---DPELRKT----CQIV----VH 562
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
L + + +LR++ + +G + E+ D+ G+S+G+GTV F + A +I N +
Sbjct: 563 GLPFSYEAPQLRDLVKGSGPILECEVKKDRITGRSKGWGTVLFQNAEAANAAIEKFNGHD 622
Query: 225 LFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDV 268
L R ++V +LD V +G M +GA GA DV
Sbjct: 623 LHGRVLSV-------KLDAHVHTADGWDICLMIIGAIGALGNDV 659
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI---KGKGD---IGLVRFDSEWTAKRAIDMM 572
V V LP + WQEL+ FR G + +A + K KG G+V F++ A+ AI +
Sbjct: 27 VFVAGLPFNVDWQELKRYFRTAGTVVYAGVMKDKEKGTSKGCGVVEFETAEQAQNAIQLF 86
Query: 573 DRTRIDGKIIDV 584
+ T++ G+ I V
Sbjct: 87 NGTQMAGRTIYV 98
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI-------KGKGDIGLVRFDSEWTAKRAIDM 571
+ V NL W+ L+D F+ CG + +++I K KG G+V F++ A A+
Sbjct: 437 LFVNNLSFETEWRALKDHFKQCGPVAYSKIIVDKETNKSKG-CGIVEFENPRDAMMAMQK 495
Query: 572 MDRTRIDGKIIDV 584
+D + +DG+ I V
Sbjct: 496 LDGSILDGRTIHV 508
>gi|358410117|ref|XP_003581718.1| PREDICTED: putative RNA-binding protein 11-like [Bos taurus]
gi|296491598|tpg|DAA33639.1| TPA: RNA binding motif protein 11 [Bos taurus]
Length = 246
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSCEPA 95
>gi|94966923|ref|NP_001035657.1| putative RNA-binding protein 11 [Bos taurus]
gi|74267635|gb|AAI02761.1| RNA binding motif protein 11 [Bos taurus]
Length = 246
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSCEPA 95
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+TG +G V F++ + K++ K++ G+K+ + + K
Sbjct: 119 FSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDF 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ LRE+F G++ + ++ +DG SRGFG V F+ P A ++ LN + L E +
Sbjct: 204 SDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPL 263
Query: 232 V--RMDRVADRLDGPVRLPEGLKS 253
R + A+R R E LKS
Sbjct: 264 YVGRAQKKAERQKELKRKFEQLKS 287
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
G +T +++ + G RG V F+ PD +A +++ E +G+ L + A +
Sbjct: 212 FEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRA-QK 270
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ + R L +++ G+N ++V NLD
Sbjct: 271 KAERQK-----ELKRKFEQLKSERLTRYQ-------------GVN------LYVKNLDDT 306
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
+D+++LR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N +
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 358
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G VE++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +VE+ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 183 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 241
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 242 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 277
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 278 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 322
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 22/210 (10%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRN--------MGGGGGVDRD-----------LSALLQNNSSKFGNTY 142
+ I + D R++ G G V + ++ +L N+ F +
Sbjct: 82 VRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 141
Query: 143 GLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGF 202
+ LG V++ N +D+++L+++F G +V++ D+ GKS+GF
Sbjct: 142 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGF 201
Query: 203 GTVEFDHPVEAVQSISMLNNQNLFERRITV 232
G V F+ +A +++ +N + L ++I V
Sbjct: 202 GFVSFERHEDAQKAVDEMNGKELNGKQIYV 231
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 84/161 (52%), Gaps = 26/161 (16%)
Query: 61 VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
V+++ D++G +G V F+ + +KAV +M+ E G+K+ + A + KG R+
Sbjct: 220 VKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRA-QKKGERQT---- 274
Query: 121 GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVF 180
+ R L Q+ +++ G+N ++V NLD +D+++LR+ F
Sbjct: 275 -ELKRKFEQLKQDRITRYQ-------------GVN------LYVKNLDDGIDDERLRKEF 314
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
G + + ++ ++ G+++GFG V F P EA ++++ +N
Sbjct: 315 SPFGTITSAKVMME-GGRNKGFGFVCFSSPEEATKAVTEMN 354
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ D +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDEHGS-KGYGFVHFETRDAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +L+ +F G +V++ D+ G S+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D+ G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAID 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|440893645|gb|ELR46339.1| Putative RNA-binding protein 11 [Bos grunniens mutus]
Length = 246
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K+++K++ G+K+ + + + K
Sbjct: 162 FSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRK 221
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 222 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 246
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E KL+++F G + + ++ DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 247 TEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCM 306
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 307 YVGRAQKKAERQQELKRKFEQLK 329
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 26/186 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T ++++ D GK RG V F+ PD +AV +++ E K + + K R+
Sbjct: 259 GTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQ 318
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
++L + + N Y G+N ++V NLD +D+++
Sbjct: 319 ---------QELKRKFEQLKIERLNRYQ---------GVN------LYVKNLDDTIDDER 354
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM- 234
LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + + V +
Sbjct: 355 LRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALA 413
Query: 235 DRVADR 240
R DR
Sbjct: 414 QRKEDR 419
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI
Sbjct: 141 VGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSID 200
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 201 KVNGMLLNGKKVYV 214
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ DD+G RG V F+ + +KAV M+ E +G+ L + A +
Sbjct: 211 FSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYVGRA-QKW 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q + + G++ ++V NLD +
Sbjct: 270 AERQN-----ELKRKFQQMKQMKQDRLNHYQGVN----------------LYVKNLDDSI 308
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D ++LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 309 DNERLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 357
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ DD G RG V F++ + ++A++ M
Sbjct: 119 FSTFGNILSCKVVCDDHGS-RGFGFVHFETREAAQQAISTM------------------- 158
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ +L NN F + + + LG+ V+V NL +
Sbjct: 159 ----------------NGMLLNNRKVFVSHFKSRQEREAELGVRAMEFTNVYVKNLQMDI 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L E+F GK +V++ D G SRGFG V F+ EA +++ +N + + + +
Sbjct: 203 DEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLY 262
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 263 VGRAQKWAER 272
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 52/220 (23%)
Query: 28 GAPLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYE--KFSLAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AELALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D G SRGFG
Sbjct: 101 -----------------IFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
V F+ A Q+IS +LNN+ +F R +R A+
Sbjct: 143 VHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAE 182
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSQKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I +N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ V+++ D G+ RG V F+ + +KAV+ M+ E G+ L + A + +
Sbjct: 211 FSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ + R + Q +++ G+N ++V NLD +
Sbjct: 270 AERQS-----ELKRRFEQMKQERQNRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++++L+EVF G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 306 NDERLKEVFSTYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 47/195 (24%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI-----KE 106
ST G + +++ ++ G RG V F++ + +KA+N M+ RK+ + ++
Sbjct: 119 FSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ 177
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E + G R +G F N Y V N
Sbjct: 178 KREAELGARALG-------------------FTNIY---------------------VKN 197
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L VDE++L+++F G +++V++ D +G+SRGFG V F+ EA +++ +N + +
Sbjct: 198 LHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVS 257
Query: 227 ERRITV-RMDRVADR 240
+ + V R + A+R
Sbjct: 258 GQLLYVGRAQKRAER 272
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
++ LY++ S +G++ + + D T + G A + FQ P +A++ M+ KG+
Sbjct: 24 ESMLYEM--FSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSHRDPGLRK--------------------SGMGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F G + + ++ ++ G SRGFG V F+ A ++I+ +N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++ + + G +G A V + + D +KAV++++ E G+KL + A +
Sbjct: 258 FKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKR- 316
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD + + N ++ G+N ++V N+D +
Sbjct: 317 -----------AERDEELRRMHEERRLENES-------KTAGVN------LYVKNIDDEW 352
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +LR F AG + + ++ D G SRGFG V F P EA +++ +N + + + +
Sbjct: 353 DDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLY 412
Query: 232 VRM 234
V +
Sbjct: 413 VSL 415
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD K+D K L + F G + + ++A D++G SRGF V ++ A +I +N
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVN 206
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 207 GMLLNDKKVYV 217
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/190 (17%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D+ G RG A V +++ + A+ ++ +K+ + + K
Sbjct: 165 FAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKK 224
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + ++ +KF N +F+ NL+ +
Sbjct: 225 --------------ERQSKVEEQRAKFTN---------------------IFIKNLEPEF 249
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+K L ++F+ G++ + +++ +DG S+GF V + A +++ LN++ + +++
Sbjct: 250 TQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLY 309
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 310 VGRAQKRAER 319
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D+TG+ +G V F+ + +KAV M+ E GR + + A
Sbjct: 211 FSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R + Q S++ G+N ++V NLD +
Sbjct: 267 --QKRLERQSELKRKFEQMKQERVSRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N +
Sbjct: 306 DDERLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 38/191 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-RGHGFVHFETQEAATRAIETMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A + +F N V++ N +
Sbjct: 171 -------GHFKSRKEREAEFGARAMEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +LRE+F GK +V++ +D G+S+GFG V F+ EA ++++ +N + + R +
Sbjct: 203 DDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVY 262
Query: 232 VRMDRVADRLD 242
V R RL+
Sbjct: 263 V--GRAQKRLE 271
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D + + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVASRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KGR + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGRPVRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NLD +D K L + F G + + ++ D++G SRG G
Sbjct: 101 -----------------VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A ++I +N L +R++ V
Sbjct: 143 VHFETQEAATRAIETMNGMLLNDRKVFV 170
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + I D T + G A V +Q P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|57108733|ref|XP_535558.1| PREDICTED: putative RNA-binding protein 11 [Canis lupus familiaris]
Length = 238
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKTFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++ + + G +G A V + + D +KAV++++ E G+KL + A +
Sbjct: 258 FKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKR- 316
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD + + N ++ G+N ++V N+D +
Sbjct: 317 -----------AERDEELRRMHEERRLENES-------KTAGVN------LYVKNIDDEW 352
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +LR F AG + + ++ D G SRGFG V F P EA +++ +N + + + +
Sbjct: 353 DDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLY 412
Query: 232 VRM 234
V +
Sbjct: 413 VSL 415
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD K+D K L + F G + + ++A D++G SRGF V ++ A +I +N
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVN 206
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 207 GMLLNDKKVYV 217
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/190 (17%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D+ G RG A V +++ + A+ ++ +K+ + + K
Sbjct: 165 FAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKK 224
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + ++ +KF N +F+ NL+ +
Sbjct: 225 --------------ERQSKVEEQRAKFTN---------------------IFIKNLEPEF 249
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+K L ++F+ G++ + +++ +DG S+GF V + A +++ LN++ + +++
Sbjct: 250 TQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLY 309
Query: 232 V-RMDRVADR 240
V R + A+R
Sbjct: 310 VGRAQKRAER 319
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 270
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 271 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 306
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 307 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 351
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 232 V 232
V
Sbjct: 260 V 260
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 178 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 236
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 237 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 272
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 273 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 317
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 82 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 133
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 134 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 165
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 166 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 225
Query: 232 V 232
V
Sbjct: 226 V 226
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 61 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 119
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 120 KMNGMLLNDRKVFVGRFKSRKEREAE 145
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%)
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
V ++ +L N+ F + + LG V++ N +D+++L+++F
Sbjct: 154 VSEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V
Sbjct: 214 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ EA + +S
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFET-QEAAERVS 155
Query: 219 ------MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 156 EKMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+T G +T V+I+ D+ G + V FQS D AV K++ T K++ + K
Sbjct: 220 FNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKK 279
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + +L A + K ++ + G N +++ N+D +
Sbjct: 280 SER---------EAELKAFFEQEKLK---------RYEKFQGAN------LYLKNIDKSL 315
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+E+KL+E+F G + + ++ D G+S+G G V F P EA ++I +N + + ++ +
Sbjct: 316 NEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVY 375
Query: 232 V 232
V
Sbjct: 376 V 376
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 157 PLINK-----VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
PLI K +F+ NL+ +D K L E F + G V + ++A+D +G S+G G V+FD+
Sbjct: 105 PLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQ 164
Query: 212 EAVQSISMLNNQNLFERRITV 232
A +I L+ + + ++++ V
Sbjct: 165 SAKNAIEKLDGRLMNDKKVYV 185
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIKKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 270
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 271 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 306
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 307 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 351
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 232 V 232
V
Sbjct: 260 V 260
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F+ + +AV M+ + G+ + + A
Sbjct: 211 FSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R L Q S++ G+N +++ NLD +
Sbjct: 267 --QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------LYIKNLDDTI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ L+ +G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ D +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----F 226
D+++L+E+F GK +V++ D GKS+GFG V F+ +A Q++ +N +++ F
Sbjct: 203 DDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ V+++ D G+ RG V F+ + +KAV+ M+ E G+ L + A + +
Sbjct: 211 FSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ + R + Q +++ G+N ++V NLD +
Sbjct: 270 AERQS-----ELKRRFEQMKQERQNRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++++L+EVF G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 306 NDERLKEVFSTYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 47/195 (24%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI-----KE 106
ST G + +++ ++ G RG V F++ + +KA+N M+ RK+ + ++
Sbjct: 119 FSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ 177
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E + G R +G F N Y V N
Sbjct: 178 KREAELGARALG-------------------FTNIY---------------------VKN 197
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L VDE++L+++F G +++V++ D +G+SRGFG V F+ EA +++ +N + +
Sbjct: 198 LHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVS 257
Query: 227 ERRITV-RMDRVADR 240
+ + V R + A+R
Sbjct: 258 GQLLYVGRAQKRAER 272
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
++ LY++ S +G++ + + D T + G A + FQ P +A++ M+ KG+
Sbjct: 24 ESMLYEM--FSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSHRDPGLRK--------------------SGMGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F G + + ++ ++ G SRGFG V F+ A ++I+ +N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 212 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 270
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 271 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 306
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 307 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 351
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 232 V 232
V
Sbjct: 260 V 260
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 36 VMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRF 95
V + G Y + S G ++ V+I+ DD+GK +G + F+ ++A+ +++
Sbjct: 203 VKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGK 262
Query: 96 ETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGIN 155
+ GRK+ + A + K + + L + QN +K+ +G+S
Sbjct: 263 QFGGRKIYVSRAQKKKEREEEL------QQKLEEIKQNRIAKY---HGMS---------- 303
Query: 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
+FV NL D++ LR++F G V + ++ + K G+ +GFG V F EA +
Sbjct: 304 ------LFVKNLAESTDDEHLRKIFAPFGTVTSAKVIV-KGGRRKGFGFVSFSSREEAKK 356
Query: 216 SISMLNNQNLFERRITVRMDR 236
++ ++ + L R + V R
Sbjct: 357 AVEEMHGKMLSARPLYVSYAR 377
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 44/190 (23%)
Query: 46 LYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI- 104
LY + + G + ++++D+ G P+G V F++ + KA+ +M+ K RK+ +
Sbjct: 123 LYDL--FAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVG 179
Query: 105 --KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
K + + RR +F N V
Sbjct: 180 QFKRPNQREEERRA-----------------KMEQFTN---------------------V 201
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V N ++ L E+F G + +V+I D GKS+GFG + F+ +A ++I +N
Sbjct: 202 YVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNG 261
Query: 223 QNLFERRITV 232
+ R+I V
Sbjct: 262 KQFGGRKIYV 271
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VFV +LD +D K+L ++F G + + ++ D++G +G G V F+ A ++I
Sbjct: 106 VGNVFVNHLDASIDNKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIK 164
Query: 219 MLNNQNLFERRITV 232
+N + ER++ V
Sbjct: 165 EMNGSLVKERKVFV 178
>gi|50285501|ref|XP_445179.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524482|emb|CAG58079.1| unnamed protein product [Candida glabrata]
Length = 419
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G+V +I+ G+ RG VEF SP+ V A+ + E GR L +++ D
Sbjct: 139 FGQAGEVLRADIITS-RGRHRGMGTVEFTSPEGVDNAIRDFNGVEFMGRPLFVRQ---DN 194
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTY---GLSPQFLESLGINCPLINKVFVANLD 168
M L +F N Y G P F +VF+ NL
Sbjct: 195 PPPEPM-----------ESLPPMRERF-NDYPPEGRPPMF------------EVFIVNLP 230
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
Y + + L+++FR AG V +I LD++G SRGFGTV + E +I N ++ R
Sbjct: 231 YSMTWQTLKDLFREAGDVIRADIELDRNGFSRGFGTVFYGTQEEMFNAIERFNGFDVDGR 290
Query: 229 RITVR 233
+ VR
Sbjct: 291 ILQVR 295
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+ P + E + N N +F+ NL + + L + F AG+V +I + G+ RG G
Sbjct: 105 MEPPYEEKIDRN--YDNSIFIGNLSFDATPEDLHDFFGQAGEVLRADIITSR-GRHRGMG 161
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
TVEF P +I N R + VR D
Sbjct: 162 TVEFTSPEGVDNAIRDFNGVEFMGRPLFVRQD 193
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP ++TWQ L+D FR GD+ A+I+ +G G V + ++ AI+
Sbjct: 224 VFIVNLPYSMTWQTLKDLFREAGDVIRADIELDRNGFSRG-FGTVFYGTQEEMFNAIERF 282
Query: 573 DRTRIDGKIIDV 584
+ +DG+I+ V
Sbjct: 283 NGFDVDGRILQV 294
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V ++ D+ G+ RG V + + +KAVN+M+ E G+ L + A
Sbjct: 211 FSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + G + R + Q+ ++ G+N ++V NLD +
Sbjct: 267 --QKRLERQGELKRKFDQIKQDRIQRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ D +S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFAPYGTITSAKVMTD-GSQSKGFGFVCFSSPEEATKAVTEMN 354
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 65/254 (25%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LYQ S G + + + D T + G A V FQ P A++ M+ KGR
Sbjct: 24 EAMLYQ--KFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDTMNYDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------Y 142
+ I + D G R++ G G +++ + N + S FGN Y
Sbjct: 82 IRIMWSQRDPGLRKS-GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKGSKGY 140
Query: 143 GL--------SPQFLESLGINCPLIN--KVFVANLDYKVD-------------------- 172
G + + +E++ N L+N KVFV + + +
Sbjct: 141 GFVHFETQEAANRAIETM--NGMLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNF 198
Query: 173 -----EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN--- 224
++KL+EVF G+ +V + D+ G+SRGFG V + H +A ++++ +N +
Sbjct: 199 GEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEING 258
Query: 225 --LFERRITVRMDR 236
L+ R R++R
Sbjct: 259 KILYVGRAQKRLER 272
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 219 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 277
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 278 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 313
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 314 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 358
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 46/203 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + I D T + G A V +Q P ++A+ ++ KGR
Sbjct: 24 EAMLYE--KFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R++ G GGGV GN
Sbjct: 82 VRIMWSQRDPSLRKS-GVGGGV---------------GN--------------------- 104
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 163
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 164 GMLLNDRKVFVGRFKSRKEREAE 186
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 123 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 174
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 175 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 206
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 207 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 266
Query: 232 V 232
V
Sbjct: 267 V 267
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 209
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 210 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 245
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 246 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 290
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 55 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 106
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 107 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 138
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 139 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 198
Query: 232 V 232
V
Sbjct: 199 V 199
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 34 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 92
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 93 KMNGMLLNDRKVFVGRFKSRKEREAE 118
>gi|344276876|ref|XP_003410231.1| PREDICTED: putative RNA-binding protein 11-like [Loxodonta
africana]
Length = 238
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVR 233
L+ R I V+
Sbjct: 72 GIRLYGRPINVQ 83
>gi|168041522|ref|XP_001773240.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675435|gb|EDQ61930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 799
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL +KV + L E F AG V +V I+ D DG+SRGFG VEF+ P E Q+ + +
Sbjct: 322 IFVKNLAWKVTQDTLYEFFADAGTVADVRISQDDDGRSRGFGHVEFETP-EGAQNALLKS 380
Query: 222 NQNLFERRITVRMDR 236
QN+ R I + R
Sbjct: 381 GQNVEGREIWCDLAR 395
>gi|426392612|ref|XP_004062641.1| PREDICTED: splicing regulator RBM11 [Gorilla gorilla gorilla]
Length = 239
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|392580010|gb|EIW73137.1| hypothetical protein TREMEDRAFT_56132, partial [Tremella
mesenterica DSM 1558]
Length = 313
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL Y+V + L+++FR AG V +++L+ D +SRG+GTV +A ++I N
Sbjct: 17 LFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLNSDNRSRGYGTVLMGSREDAARAIDRFN 76
Query: 222 NQNLFERRITVRMDRVADRLD 242
R + VR DR+ +
Sbjct: 77 GFTWQTRTLEVRPDRLPPEYE 97
>gi|156839481|ref|XP_001643431.1| hypothetical protein Kpol_487p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156114041|gb|EDO15573.1| hypothetical protein Kpol_487p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 376
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H ST+G+V +I+ G RG VEF + D V +A+++ R++ +++ ++
Sbjct: 87 HFSTIGEVVRADIITS-RGHHRGMGTVEFTNADDVNEAISQYDGSYLLDRQIFVRQ--DN 143
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
+ +R L N+ S ++ + +VF+ANL Y
Sbjct: 144 PPPEASHESEPPRERRERRTLGNDGS-----------------LHSHIGYEVFIANLPYS 186
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
++ + L+++F+ G V ++ LD++G SRGFGTV + ++ISM N L R +
Sbjct: 187 INWQALKDMFKECGSVIRADVELDRNGYSRGFGTVILGSQEDMERAISMYNGYELEGRVL 246
Query: 231 TVRMDR 236
VR R
Sbjct: 247 EVREGR 252
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
+N N VFV NL Y + LR+ F G+V +I + G RG GTVEF + +
Sbjct: 62 VNRNYANSVFVGNLTYDCTPEDLRDHFSTIGEVVRADIITSR-GHHRGMGTVEFTNADDV 120
Query: 214 VQSISMLNNQNLFERRITVRMD 235
++IS + L +R+I VR D
Sbjct: 121 NEAISQYDGSYLLDRQIFVRQD 142
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 6/174 (3%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G V ++ D G RG V S + + +A++ + +E +GR L ++E
Sbjct: 196 FKECGSVIRADVELDRNGYSRGFGTVILGSQEDMERAISMYNGYELEGRVLEVRE----- 250
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G N + D+ N N G S QF + + ++ +NL +
Sbjct: 251 GRSNNQDEEMPISEDIEINDNGNDINDENA-GTSDQFTDGVVGGGEKNELIYCSNLPFST 309
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+ L ++F GK++N E+ D+ G G VE+++ +A + LNN N
Sbjct: 310 AKSDLFDLFETIGKLKNAELKFDQKGNPTGVAIVEYENVDDAQVCVDRLNNYNY 363
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
V + NLP +I WQ L+D F+ CG + A+++ +G G V S+ +RAI M
Sbjct: 178 VFIANLPYSINWQALKDMFKECGSVIRADVELDRNGYSRG-FGTVILGSQEDMERAISMY 236
Query: 573 DRTRIDGKIIDV 584
+ ++G++++V
Sbjct: 237 NGYELEGRVLEV 248
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 209
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 210 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 245
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 246 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 290
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 55 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 106
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 107 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 138
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 139 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 198
Query: 232 V 232
V
Sbjct: 199 V 199
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 34 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 92
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 93 KMNGMLLNDRKVFVGRFKSRKEREAE 118
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D +G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 211 FSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLTRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N +
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + + A++ M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQNAISTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREVELGARAMEFTNIY---------------------VKNLHVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE++L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + + R +
Sbjct: 203 DEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGQPIRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NL+ +D K L + F G + + ++ D+ G SRGFG
Sbjct: 101 -----------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A +IS +N L +R++ V
Sbjct: 143 VHFETHEAAQNAISTMNGMLLNDRKVFV 170
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V ++ D+ G+ RG V + + +KAV++M+ E G+ + + A
Sbjct: 211 FSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + G + R L Q+ ++ G+N ++V NLD +
Sbjct: 267 --QKRLERQGELKRKFDQLKQDRIQRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ + + G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPYGTITSAKV-MTEAGQSKGFGFVCFSSPEEATKAVTEMN 354
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 111/272 (40%), Gaps = 64/272 (23%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDL 84
G PL V DL +A LYQ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYQ--KFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG 139
A++ M+ KGR + I + D R++ G G +++ + N + S FG
Sbjct: 65 AECALDTMNYDVIKGRPIRIMWSQRDPALRKS-GVGNIFIKNIDDSIDNKALYDTFSAFG 123
Query: 140 NT--------------YGL--------SPQFLESLGINCPLIN--KVFVANLDYK----- 170
N YG + + +E++ N L+N KVFV + +
Sbjct: 124 NILSCKVVCDERGSKGYGFVHFETQEAANRAIETM--NGMLLNDRKVFVGHFKSRKEREV 181
Query: 171 --------------------VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
+ ++KL+E F GK +V + D+ G+SRGFG V + H
Sbjct: 182 EFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHH 241
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
+A +++ +N + + + I V R RL+
Sbjct: 242 EDAQKAVDEMNGKEMNGKIIYV--GRAQKRLE 271
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 183 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 242
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L S++ G+N ++V NLD +
Sbjct: 243 AERQQ-----ELKRKFEQLKLERLSRYQ-------------GVN------LYVKNLDDSI 278
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++++LR F G + + ++ ++ DG+S+GFG V F P EA ++++ +N + + + +
Sbjct: 279 NDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 337
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 338 VALAQRKEDR 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 34/239 (14%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------- 141
+ I + D R++ G G ++L + N + S FGN
Sbjct: 82 IRIMWSQRDPSLRKS-GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKG 140
Query: 142 YGLSPQFLESLG------INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK 195
YG E +N L+N N + + KL+E+F G + + ++ +
Sbjct: 141 YGFVHFETEEAANKSIDKVNGMLLNGK--KNFGEDMTDDKLKEMFEKYGTITSHKVMIKD 198
Query: 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV--RMDRVADRLDGPVRLPEGLK 252
DGKSRGFG V F+ P A Q++ LN + + E + R + A+R R E LK
Sbjct: 199 DGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|301757276|ref|XP_002914487.1| PREDICTED: putative RNA-binding protein 11-like [Ailuropoda
melanoleuca]
gi|281347610|gb|EFB23194.1| hypothetical protein PANDA_002377 [Ailuropoda melanoleuca]
Length = 238
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKTFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 89 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 147
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 148 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 183
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 184 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 228
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + LG V++ N +D+++L+++F G
Sbjct: 32 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 91
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V
Sbjct: 92 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 137
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 106 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 164
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 165 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 200
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 201 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 245
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 10 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 61
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 62 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 93
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 94 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 153
Query: 232 V 232
V
Sbjct: 154 V 154
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 230 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 288
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 289 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 324
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 325 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 369
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 134 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 185
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 186 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 217
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 218 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 277
Query: 232 V 232
V
Sbjct: 278 V 278
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 113 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 171
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 172 KMNGMLLNDRKVFVGRFKSRKEREAE 197
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 235 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 293
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 294 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 329
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 330 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 374
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 139 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 190
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 191 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 222
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 223 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 282
Query: 232 V 232
V
Sbjct: 283 V 283
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 118 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 176
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 177 KMNGMLLNDRKVFVGRFKSRKEREAE 202
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 156 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 214
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 215 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 250
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 251 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 295
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 60 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 111
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 112 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 143
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 144 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 203
Query: 232 V 232
V
Sbjct: 204 V 204
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 39 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 97
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 98 KMNGMLLNDRKVFVGRFKSRKEREAE 123
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 251 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 309
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 310 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 345
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 346 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 390
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 155 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 206
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 207 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 238
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 239 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 298
Query: 232 V 232
V
Sbjct: 299 V 299
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 134 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 192
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 193 KMNGMLLNDRKVFVGRFKSRKEREAE 218
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 150 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 208
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 209 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 244
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 245 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 289
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 54 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 105
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 106 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 137
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 138 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 197
Query: 232 V 232
V
Sbjct: 198 V 198
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 33 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 91
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 92 KMNGMLLNDRKVFVGRFKSRKEREAE 117
>gi|320031479|gb|EFW13442.1| hypothetical protein CPSG_09988 [Coccidioides posadasii str.
Silveira]
Length = 382
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 14 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 73
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R GP
Sbjct: 74 SNQNLMGRLVYVREDREAEPRFTGP 98
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L E+F GKVE EI + +G+SRG G V+FD A +IS
Sbjct: 282 IYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEANGRSRGTGVVQFDTVENAETAISKF 340
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 VSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD ++ K L + G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 202
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 203 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 238
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 239 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 283
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 48 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 99
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 100 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 131
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 132 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 191
Query: 232 V 232
V
Sbjct: 192 V 192
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 27 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 85
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 86 KMNGMLLNDRKVFVGRFKSRKEREAE 111
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 202
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 203 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 238
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 239 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 283
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 48 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 99
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 100 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 131
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 132 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 191
Query: 232 V 232
V
Sbjct: 192 V 192
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 27 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 85
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 86 KMNGMLLNDRKVFVGRFKSRKEREAE 111
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 202
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 203 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 238
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 239 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 283
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 48 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 99
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 100 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 131
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 132 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 191
Query: 232 V 232
V
Sbjct: 192 V 192
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 27 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 85
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 86 KMNGMLLNDRKVFVGRFKSRKEREAE 111
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ + D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ DGKSRGFG V F+ P A ++++ LN + + E +I
Sbjct: 204 TDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 25/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T ++++ D GK RG V F+ P+ +AV ++ E K++ + K
Sbjct: 212 FEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ ++L + + N Y G+N ++V NLD +
Sbjct: 272 AERQ---------QELKRKFEQLKIERLNRYQ---------GVN------LYVKNLDDTI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + +V++ ++ DG+S+GFG V F EA ++++ +N
Sbjct: 308 DDERLRKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMN 356
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDTMNFDIIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D RR S GN
Sbjct: 82 IRIMWSQRDPSLRR--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + +A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|340518827|gb|EGR49067.1| predicted protein [Trichoderma reesei QM6a]
Length = 493
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A Q+++ L
Sbjct: 101 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVAQL 160
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 161 SNQNLMGRLVYVREDREAE 179
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + ++AV ++ GR + ++ ED+
Sbjct: 120 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVAQLSNQNLMGRLVYVR---EDR 176
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G G + F Y G +++VANL Y V
Sbjct: 177 EAEPRFIGATGTNARGGYGGGGMHGGFNPGYAGG---PPGGGGGGGAGRQIYVANLPYNV 233
Query: 172 DEKKLREVFRLAGKVENV---EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ L+++FR A ++ V ++ DG+ +G G V F+ P +A +I N + R
Sbjct: 234 GWQDLKDLFRQAARIGGVLRADVHTGPDGRPKGSGIVVFESPDDARSAIQQFNGYDWQGR 293
Query: 229 RITVRMD 235
+ VR D
Sbjct: 294 LLEVRED 300
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + L E+F GKVE EI + G+SRG G V FD P A +I+
Sbjct: 395 IYVRNLPWSTSNDDLVELFTTIGKVEQAEIQYEPSGRSRGTGVVRFDSPETAETAIAKF 453
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ +T+G V EI + +G+ RG+ +V F SP+ A+ K ++ GR L
Sbjct: 410 VELFTTIGKVEQAEIQYEPSGRSRGTGVVRFDSPETAETAIAKFQGYQYGGRPL 463
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ V+++ D G+ RG V F+ + +KAV+ M+ E G+ L + A + +
Sbjct: 211 FSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ + R + Q +++ G+N ++V NLD +
Sbjct: 270 AERQSE-----LKRRFEQMKQERQNRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++++L+EVF G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 306 NDERLKEVFSTYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 37/202 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G + +++ ++ G RG V F++ + +KA+N M
Sbjct: 119 FSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTM------------------- 158
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ +L N+ F + + LG ++V NL V
Sbjct: 159 ----------------NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE++L+++F G +++V++ D +G+SRGFG V F+ EA +++ +N + + + +
Sbjct: 203 DEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLY 262
Query: 232 V-RMDRVADRLDGPVRLPEGLK 252
V R + A+R R E +K
Sbjct: 263 VGRAQKRAERQSELKRRFEQMK 284
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
++ LY++ S +G++ + + D T + G A + FQ P +A++ M+ KG+
Sbjct: 24 ESMLYEM--FSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSHRDPGLRK--------------------SGMGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F G + + ++ ++ G SRGFG V F+ A ++I+ +N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ +G K+ +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +D A L++ +S+F N Y +
Sbjct: 170 --------------GRFKSRKDREAELRSKASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARA---- 265
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + Q + C ++ K++V NLD +
Sbjct: 266 --------------------QKKVERQAELKQMFEQLKKERIRGCQVV-KLYVKNLDDTI 304
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR F G + V++ + ++G+S+GFG + F P +A+++++ +N + L
Sbjct: 305 DDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDALKAMTEMNGRIL 357
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKLLQGCKVFVGRFKSRKDREAE 181
>gi|401406638|ref|XP_003882768.1| putative Gbp1p protein [Neospora caninum Liverpool]
gi|325117184|emb|CBZ52736.1| putative Gbp1p protein [Neospora caninum Liverpool]
Length = 294
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+VFV+NL ++ + L+++FR G V ++ DG+S+G GTV F P A +++ +
Sbjct: 217 QVFVSNLPWRTSWQDLKDLFRECGDVVRADVMTMPDGRSKGVGTVLFSTPEGAQRAVELF 276
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I+VR+DRVA
Sbjct: 277 NEYMLDGRPISVRIDRVA 294
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV + L++ + AG+V ++ D G+S+G G VE+ + +A ++I L
Sbjct: 24 RVYVGNLSWKVRWQHLKDHMKQAGEVLRADVFEDFQGRSKGCGIVEYTNVEDAQKAIKEL 83
Query: 221 NNQNLFERRITVRMDR 236
+ LF+R I VR DR
Sbjct: 84 TDTELFDRLIFVREDR 99
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP +WQ+L+D FR CGD+ A++ + KG +G V F + A+RA+++
Sbjct: 218 VFVSNLPWRTSWQDLKDLFRECGDVVRADVMTMPDGRSKG-VGTVLFSTPEGAQRAVELF 276
Query: 573 DRTRIDGKIIDV 584
+ +DG+ I V
Sbjct: 277 NEYMLDGRPISV 288
>gi|156367274|ref|XP_001627343.1| predicted protein [Nematostella vectensis]
gi|156214250|gb|EDO35243.1| predicted protein [Nematostella vectensis]
Length = 83
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
VFV NLD +V E+ L E+F AG +ENV I DK+ G+ R FG VEF PV + +L
Sbjct: 5 VFVGNLDSRVTEEILWELFLQAGPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELL 64
Query: 221 NNQNLFERRITVR 233
+ L++R I V+
Sbjct: 65 DGIRLYDRAINVK 77
>gi|392862747|gb|EAS36587.2| RNP domain-containing protein [Coccidioides immitis RS]
Length = 473
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 105 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 164
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R GP
Sbjct: 165 SNQNLMGRLVYVREDREAEPRFTGP 189
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L E+F GKVE EI + +G+SRG G V+FD A +IS
Sbjct: 373 IYVRNLPWSTCNEDLVELFSTIGKVERAEIQYEANGRSRGTGVVQFDTVENAETAISKF 431
>gi|406605793|emb|CCH42784.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 436
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++T+ ++ D+ G+ RG IV F++ + V A+ + + +E +GR+L + E
Sbjct: 263 FREAGEITHADVRLDEGGRSRGFGIVSFKNKEDVDNAIKQFNGYEIEGRQLDVHE----- 317
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G+ N R+ + + N K + F E + N + ++V NL +
Sbjct: 318 -GKNNSRFESEQKREPESSYKPNVQK-------NSDFTEGVEANGEKNSTIYVDNLPFAT 369
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L E+F AG+V EI D G+ G V+F+ A +I+ LN
Sbjct: 370 SNDDLFELFETAGRVSAAEIKYDPTGRPAGSAVVKFESEESAEAAINELN 419
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
N P +VFVANL + ++ + L+++FR AG++ + ++ LD+ G+SRGFG V F + +
Sbjct: 238 NGPKGFEVFVANLPFSINWQALKDIFREAGEITHADVRLDEGGRSRGFGIVSFKNKEDVD 297
Query: 215 QSISMLNNQNLFERRITV 232
+I N + R++ V
Sbjct: 298 NAIKQFNGYEIEGRQLDV 315
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N +FV NL + D +L++ F+ G V +I + ++G+ RG GTVEF E ++I
Sbjct: 70 NSIFVGNLPFDCDWTQLKDHFQSIGNVVRADI-VTQNGRPRGMGTVEFGSKSEVDRAIRE 128
Query: 220 LNNQNLFERRITVRMD 235
N+ +R I VR D
Sbjct: 129 FNHTPFLDRDIFVRQD 144
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
V V NLP +I WQ L+D FR G+I A++ + +G G+V F ++ AI
Sbjct: 245 VFVANLPFSINWQALKDIFREAGEITHADVRLDEGGRSRG-FGIVSFKNKEDVDNAIKQF 303
Query: 573 DRTRIDGKIIDV 584
+ I+G+ +DV
Sbjct: 304 NGYEIEGRQLDV 315
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
T G V+ EI D TG+P GSA+V+F+S + A+N+++ + GR L I
Sbjct: 378 FETAGRVSAAEIKYDPTGRPAGSAVVKFESEESAEAAINELNEYSYGGRPLNI 430
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A ++
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------QK 268
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 269 RVERQTELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 30/177 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S+ G + + I D+ G+ +G V + SPD R+A+ M + + L + A +
Sbjct: 214 FSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK- 272
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
V+R+ +L + + G L+ +G N ++V N+D V
Sbjct: 273 -----------VERE--QILHHLFVEKG---------LKHMGSN------IYVKNIDTSV 304
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ-NLFE 227
+++LR+ F G+V + ++ D G S+GFG V F VEA +S+S N + + FE
Sbjct: 305 GDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGELSCFE 361
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 44/205 (21%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G++ +I + GK +G ++F S + A+ KM+ + +++ + + +
Sbjct: 127 GNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKS---- 182
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+R L L +KF N Y V NLD V EK
Sbjct: 183 --------ERSLPDL----DAKFTNLY---------------------VKNLDPVVTEKH 209
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI-----SMLNNQNLFERRI 230
L E F GK+ ++ I D++G+S+GFG V +D P +A +++ S ++ L+ R
Sbjct: 210 LGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARA 269
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIG 255
+++R +++ + + +GLK +G
Sbjct: 270 QKKVER--EQILHHLFVEKGLKHMG 292
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL +D L ++F+ G + + +IA +DGKS+GFG ++FD A +I +N
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMN 164
Query: 222 NQNLFERRITV-RMDRVADR 240
+ +++I V + R ++R
Sbjct: 165 GSTVRDKQIYVGKFIRKSER 184
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK------GKGDIGLVRFDSEWTAKRAIDMM 572
+ VKNL P +T + L +KF + G I IK KG G V +DS A+RA++ M
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKG-FGFVNYDSPDDARRAMEAM 254
Query: 573 DRTRIDGKIIDV 584
D ++ KI+ V
Sbjct: 255 DGSQFGSKILYV 266
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D TG+ +G V F+ + +KAV M+ E GR + + A
Sbjct: 211 FSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R + Q S++ G+N ++V NLD +
Sbjct: 267 --QKRLERQSELKRKFEQMKQERVSRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 38/191 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-RGHGFVHFETQEAATRAIQTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A + +F N V++ N +
Sbjct: 171 -------GHFKSRKEREAEFGARAMEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+ +LRE+F GK +V++ +D G+S+GFG V F+ EA ++++ +N + + R +
Sbjct: 203 DDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVY 262
Query: 232 VRMDRVADRLD 242
V R RL+
Sbjct: 263 V--GRAQKRLE 271
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D + + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVASRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KGR + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGRPVRIMWSQRDPGLRK--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NLD +D K L + F G + + ++ D++G SRG G
Sbjct: 101 -----------------VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A ++I +N L +R++ V
Sbjct: 143 VHFETQEAATRAIQTMNGMLLNDRKVFV 170
>gi|189347593|ref|YP_001944122.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189341740|gb|ACD91143.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
+++ NLDY V E LRE F G+V N + DK G+S+GFG VE + EA ++IS L
Sbjct: 3 IYIGNLDYNVTESDLRETFGEFGEVSNASVITDKFTGRSKGFGFVEMPNNAEASEAISSL 62
Query: 221 NNQNLFERRITVRMDRVADRLDGPVRLP 248
N+ +L R T++++ R P+ P
Sbjct: 63 NDSDLNGR--TIKVNEAKPREQRPISRP 88
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D G+ RG + F+ + +KAV+ M+ E G+ L + A + +
Sbjct: 211 FSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q +++ G+N ++V NLD +
Sbjct: 270 AERQN-----ELKRRFEQMKQERQNRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ +L+EVF G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 306 NDDRLKEVFSTYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 47/207 (22%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI-----KE 106
ST G + +++ ++ G RG V F++ + +KA+N M+ RK+ + ++
Sbjct: 119 FSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ 177
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
E + G R +G F N ++V N
Sbjct: 178 KREAELGARALG-------------------FTN---------------------IYVKN 197
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L +DE+ L+++F GK ++V++ D +G+SRGFG + F+ EA +++ +N + +
Sbjct: 198 LRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVS 257
Query: 227 ERRITV-RMDRVADRLDGPVRLPEGLK 252
+ + V R + A+R + R E +K
Sbjct: 258 GQLLYVGRAQKRAERQNELKRRFEQMK 284
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY++ S +G + + + D T + G A + FQ P +A++ M+ KG+
Sbjct: 24 EAMLYEM--FSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G RR S GN
Sbjct: 82 IRIMWSHRDPGLRR--------------------SGMGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F G + + ++ ++ G SRGFG V F+ A ++I+ +N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV L Y DE L+E F G+V + LD++ G+SRGFG + F EA ++
Sbjct: 41 KLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQA 100
Query: 220 LNNQNLFERRITV 232
++ Q+L RRI V
Sbjct: 101 MDGQDLHGRRIKV 113
>gi|336467389|gb|EGO55553.1| hypothetical protein NEUTE1DRAFT_95731 [Neurospora tetrasperma FGSC
2508]
gi|350287968|gb|EGZ69204.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 434
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 46 RVYVGNLSYDVKWHHLKDFMRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQNAVATL 105
Query: 221 NNQNLFERRITVRMDRVADRLDGP 244
+NQNL R + VR DR A+ GP
Sbjct: 106 SNQNLMGRLVYVREDREAEPRFGP 129
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
++V NL + + L E+F GKVE EI + G+SRG G V FD
Sbjct: 335 IYVRNLPWSTSNEDLVELFSTIGKVEQAEIQYEPSGRSRGSGVVRFD 381
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 69 GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
G+P+GS IV F++PD R A+ + + ++ +GR L ++E
Sbjct: 211 GRPKGSGIVVFETPDDARNAIQQFNGYDWQGRMLEVRE 248
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 49 ISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ ST+G V EI + +G+ RGS +V F + D A+ K ++ GR L
Sbjct: 350 VELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDNADTADTAIQKFQGYQYGGRPL 403
>gi|145231104|ref|XP_001389816.1| RNA-binding protein rsd1 [Aspergillus niger CBS 513.88]
gi|134055944|emb|CAK37421.1| unnamed protein product [Aspergillus niger]
gi|350638781|gb|EHA27137.1| hypothetical protein ASPNIDRAFT_46267 [Aspergillus niger ATCC 1015]
Length = 570
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 39/189 (20%)
Query: 49 ISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL----V 103
I+ VG V +I+ D +G+ +G VEF+S D V A+ + G+KL +
Sbjct: 197 IAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKSEDSVAPAI------QLTGQKLLGIPI 250
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
I + E + R+ +N + GN + ++++
Sbjct: 251 IAQLTEAEKNRQ---------------ARNPEASSGNNHAAP-------------FHRLY 282
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V N+ + + E L+ VF G++E V++ D+ G+SRG+G V+F P +A +++ +N
Sbjct: 283 VGNIHFSITESDLQNVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGF 342
Query: 224 NLFERRITV 232
+L R I V
Sbjct: 343 DLAGRAIRV 351
>gi|307105079|gb|EFN53330.1| hypothetical protein CHLNCDRAFT_137048 [Chlorella variabilis]
Length = 382
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
H G VT I+ DTG+ +G VEF+S + A+ ++H + GR+L ++ E
Sbjct: 145 HFGQAGSVTSARIVRKRDTGQSQGFGFVEFESAEEASAAIERLHTSQLDGRELQVR---E 201
Query: 110 DKGGRRNMGGGG--------GVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
D+G +R + G G RD S QN + + G Y +P +++
Sbjct: 202 DRGDKRQVRGPGRDGPREFRDGPRDFSQGYQNRAPRQGG-YQSAPD-------TRVVVHG 253
Query: 162 VFVANLDYKVDEKKL--REVFRLAGKVENV---EIALDKDGKSRGFGTVEFDHPVEAVQS 216
+ + + ++ D K L R + G E V ++ DG SRG+G + P +A
Sbjct: 254 LPITDFQWQ-DFKDLAKRALEEGGGNTEGVMRADVRTHPDGTSRGWGILTMGTPADAQTV 312
Query: 217 ISMLNNQNLFERRITVRMDRVA-DRLDGP 244
I +L+ ++ R ++ +MD A R GP
Sbjct: 313 IEVLHGSSIDGRVVSAKMDEFARGREQGP 341
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D+ G+ +G V + + + ++AV++M+ E GR++ + A + KG R+
Sbjct: 206 GRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRA-QKKGERQ 264
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 265 T-----ELKRHFEQIKQDRVTRYQ-------------GVN------LYVKNLDDTIDDER 300
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
LR F G + + ++ ++ G SRGFG V F P EA ++++ +N +
Sbjct: 301 LRTEFSPFGTITSAKVMME-GGHSRGFGFVCFSAPDEAAKAVTEMNGK 347
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++++D+ G +G V F++ + KA+ KM+ K K+ + K
Sbjct: 110 FSGFGNILSCKVVSDENGS-KGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRK 168
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+L LG V++ N +
Sbjct: 169 ------------ERELE-----------------------LGARAREFTNVYIKNFGEDM 193
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +L E+F G+ +V++ D+ G+S+GFG V + +A +++ +N + L RRI
Sbjct: 194 DNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIY 253
Query: 232 V 232
V
Sbjct: 254 V 254
>gi|440640342|gb|ELR10261.1| hypothetical protein GMDG_04647 [Geomyces destructans 20631-21]
Length = 584
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A Q+++ L
Sbjct: 198 RVYVGNLAYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVNTL 257
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R P
Sbjct: 258 SNQNLMGRLVYVREDREAEPRFTAP 282
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 4/190 (2%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + ++AVN + GR + ++E E +
Sbjct: 217 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVNTLSNQNLMGRLVYVREDREAE 276
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R GG FG + + G +++V NL Y V
Sbjct: 277 -PRFTAPPTGGRGGFDGGPRGGFGGNFGPPPTGAGGAGGAGGAGGAGGRQIYVNNLPYTV 335
Query: 172 DEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ L+++FR A G V ++ + DG+ +G G V F+ P +A +I N + R
Sbjct: 336 GWQDLKDLFRQAAREGAVIRADVHIGPDGRPKGSGIVAFESPNDARNAIQQFNGYDWQGR 395
Query: 229 RITVRMDRVA 238
+ VR DR A
Sbjct: 396 PLEVREDRFA 405
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NL + + L E+F GKVE EI + +G+SRG G V FD A +IS +
Sbjct: 485 IYVRNLPWSTSNEDLVELFTTIGKVEQAEIQYEPNGRSRGTGVVRFDTVENADTAISKFS 544
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T + D GK +G V +++ ++ +KAV+ ++ + G+KL + A
Sbjct: 314 FEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRA---- 369
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RN +RD +++K L G+N +++ N+D +
Sbjct: 370 -QKRN-------ERDEELRRTFDAAKMERLAKLQ-------GVN------LYIKNIDDDM 408
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KLR F G + + +I D G S+GFG V F P EA ++I+ +NN+ + + +
Sbjct: 409 DDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLY 468
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 469 VSLAQRRD 476
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD ++DE + R++F G + + + LD DGKS+GFG V ++ A +++ LN
Sbjct: 296 IYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALN 355
Query: 222 NQNLFERRITV 232
+++ +++ V
Sbjct: 356 EKDINGKKLFV 366
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
+F+ NLD +D K L + F G V + ++A+D+ G S+G+G V ++
Sbjct: 203 IFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYE 249
>gi|390598926|gb|EIN08323.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 299
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N+++V NL Y+ + L+++FR AG + +I + DG+ +G GTV F+ +A +I+M
Sbjct: 29 NQLYVGNLPYQAGWQDLKDLFRSAGNIIRADINIAPDGRPKGSGTVIFETAKDAQNAINM 88
Query: 220 LNNQNLFERRITVRMDRVADRLDGP 244
N + + R + VR DR A L GP
Sbjct: 89 YNGFDWYGRILEVREDRYAG-LSGP 112
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++ V NL + + L E+F G+VE EI D +S+G G V+F EA +I+
Sbjct: 202 QIMVRNLPWSTANEDLVELFETTGQVELAEILFDGT-RSKGMGVVQFAQVAEAETAIAKF 260
Query: 221 NNQNLFERRITVRMD 235
+ R + VR +
Sbjct: 261 QSYVYGGRPLDVRFN 275
>gi|378732142|gb|EHY58601.1| hypothetical protein HMPREF1120_06609 [Exophiala dermatitidis
NIH/UT8656]
Length = 451
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
Q ++S+ + +V+V NL Y V L++ R AG+V ++ L +G S+G G VE
Sbjct: 35 QMMQSVRESSQQDRRVYVGNLAYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVE 94
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVAD-RLDGP 244
+ +A Q+I L+NQ+L R + VR DR + R GP
Sbjct: 95 YATREQAQQAIQTLSNQSLMGRLVYVREDRETEPRFTGP 133
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 31/201 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + ++A+ + GR + ++E
Sbjct: 68 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAIQTLSNQSLMGRLVYVRE----- 122
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSK-----------FGNTYGLSPQFLESLGINCPLIN 160
DR+ SS+ G G+
Sbjct: 123 ------------DRETEPRFTGPSSRGDFGGGPRGGYGGGYGAGGMGGGMGGGMAGGGAR 170
Query: 161 KVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++V+NL + V + L+++FR A G V ++ +D G+ +G G V F+ P +A +I
Sbjct: 171 QLYVSNLPFNVGWQDLKDLFRQAATEGGVIRADVHVDATGRPKGTGIVAFESPNDARNAI 230
Query: 218 SMLNNQNLFERRITVRMDRVA 238
N + R + VR DR A
Sbjct: 231 QQFNGYDWHGRALEVREDRYA 251
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 148 FLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF 207
F S G P+I +V NL + + L E+F GKVE EI + +G+SRG G VEF
Sbjct: 341 FATSGGEKNPII---YVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEF 397
Query: 208 DHPVEAVQSISML 220
+A +IS
Sbjct: 398 GSADDAETAISKF 410
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRF 559
+S+ +SS +R V V NL + W L+D R G++ FA++ KG G+V +
Sbjct: 38 QSVRESSQQDR-RVYVGNLAYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKG-CGIVEY 95
Query: 560 DSEWTAKRAIDMMDRTRIDGKIIDV 584
+ A++AI + + G+++ V
Sbjct: 96 ATREQAQQAIQTLSNQSLMGRLVYV 120
>gi|331214488|ref|XP_003319925.1| hypothetical protein PGTG_00837 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309298915|gb|EFP75506.1| hypothetical protein PGTG_00837 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 331
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++V+V NL Y V ++L++ R AG+V E+ + DG+S+G G VEF A ++I+
Sbjct: 34 HRVYVGNLPYAVGWRELKDFMREAGEVSFAEVLMGNDGRSKGCGVVEFSTGEAAQKAITE 93
Query: 220 LNNQNLFERRITVRMDRVAD 239
L+++ L R + +R DR A
Sbjct: 94 LSDRPLLGRPVFIREDREAH 113
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 479 MDYGGGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR 538
M YG G+ G+G G++ + +++ V V NLP + W+EL+D R
Sbjct: 5 MGYGQGAS-------GFGG--QGINRAALAAAAHSVKAHRVYVGNLPYAVGWRELKDFMR 55
Query: 539 NCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAI-DMMDR 574
G++ FAE+ + KG G+V F + A++AI ++ DR
Sbjct: 56 EAGEVSFAEVLMGNDGRSKG-CGVVEFSTGEAAQKAITELSDR 97
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V++ E+L + G+ +G +VEF + + +KA+ ++ GR + I+E
Sbjct: 54 MREAGEVSFAEVLMGNDGRSKGCGVVEFSTGEAAQKAITELSDRPLLGRPVFIRE----- 108
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQ----FLESLGINCPLINKVFVANL 167
DR+ YG PQ + G ++F+ L
Sbjct: 109 ------------DREAHP-----------RYGHQPQRPVYPGAAPGGGGGPGRQLFITGL 145
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
V + L+++FR AG V ++ + K GTV EA +I+ N +
Sbjct: 146 APSVTWQTLKDMFRTAGTVVRADVNVAKCT-----GTVVMSSEAEATAAIATFNGSTIEG 200
Query: 228 RRITVRMDR 236
RI VR DR
Sbjct: 201 SRIVVREDR 209
>gi|402080147|gb|EJT75292.1| RNP domain-containing protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 509
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
Q + +L N +V+V NL Y V L++ R AG+V ++ L +G S+G G VE
Sbjct: 116 QMMSNLRENSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVIFADVLLLPNGMSKGCGIVE 175
Query: 207 FDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239
+ +A +++ L+NQNL R + VR DR A+
Sbjct: 176 YATREQAQNAVATLSNQNLMGRLVYVREDREAE 208
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV + GR + ++E E +
Sbjct: 149 MRQAGEVIFADVLLLPNGMSKGCGIVEYATREQAQNAVATLSNQNLMGRLVYVREDREAE 208
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R N R FG G +P + G +VFV NL + V
Sbjct: 209 P-RFN---SNAGGRGGGFAGTGGPGNFGGPSGFNPMGGSTAG------RQVFVNNLPFNV 258
Query: 172 DEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
D ++ +++FR A G V ++ + D + +G G V FD P +A +I+ N + R
Sbjct: 259 DWREFKDLFRQAARVGGVHRADVHMTPDQRPKGSGIVIFDSPDDANNAINQFNGYEWYGR 318
Query: 229 RITVRMD 235
+ VR+D
Sbjct: 319 TLEVRLD 325
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + L E+F G+VE EI + G+SRG G V FD A +I+
Sbjct: 409 IYVRNLPWSTSNDDLVELFTTIGRVEQAEIQYEPSGRSRGSGVVRFDSAETAETAIAKF 467
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 509 NQSSNIER-DTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDS 561
N +S ER +T+ V+NLP + + +L + F G ++ AEI + +G G+VRFDS
Sbjct: 398 NATSGTERSETIYVRNLPWSTSNDDLVELFTTIGRVEQAEIQYEPSGRSRGS-GVVRFDS 456
Query: 562 EWTAKRAIDMMDRTRIDGKIIDVTF 586
TA+ AI + G+ ++++F
Sbjct: 457 AETAETAIAKFQGYQYGGRPLNLSF 481
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 261 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 319
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 320 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 355
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 356 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 400
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 165 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 216
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 217 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 248
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 249 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 308
Query: 232 V 232
V
Sbjct: 309 V 309
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 144 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 202
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 203 KMNGMLLNDRKVFVGRFKSRKEREAE 228
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 27 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 85
Query: 219 MLN 221
+N
Sbjct: 86 KMN 88
>gi|296414687|ref|XP_002837029.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632878|emb|CAZ81220.1| unnamed protein product [Tuber melanosporum]
Length = 520
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+++V+NL Y + L+++FR AG V ++ + DG+ +G G V F+ P +A +I+
Sbjct: 328 QIYVSNLPYTAGWQDLKDLFRQAGAVVRADVHIGPDGRPKGSGVVAFESPEDARNAIAQF 387
Query: 221 NNQNLFERRITVRMDRVADRLDGPV 245
NN + R++ VR DR A + P+
Sbjct: 388 NNYDWQGRQLEVREDRFAGSMTIPL 412
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+ ++ +++ L
Sbjct: 214 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKQLQ--------DSQTAVNTL 265
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 266 SNQNLMGRLVYVREDREAE 284
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ V NLP T WQ+L+D FR G + A++ + KG G+V F+S A+ AI
Sbjct: 329 IYVSNLPYTAGWQDLKDLFRQAGAVVRADVHIGPDGRPKGS-GVVAFESPEDARNAIAQF 387
Query: 573 DRTRIDGKIIDV 584
+ G+ ++V
Sbjct: 388 NNYDWQGRQLEV 399
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
G V ++ G+P+GS +V F+SP+ R A+ + + ++ +GR+L ++E
Sbjct: 350 AGAVVRADVHIGPDGRPKGSGVVAFESPEDARNAIAQFNNYDWQGRQLEVRE 401
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD +D K L + F L G + + ++AL DGKSRGFG V F+ A +I+ LN
Sbjct: 17 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 76
Query: 222 NQNLFERRITVR-MDRVADRLDG 243
+ E+ + V + A+R DG
Sbjct: 77 GMQIGEKTVYVAPFKKTAERNDG 99
>gi|159479638|ref|XP_001697897.1| U1 small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158273995|gb|EDO99780.1| U1 small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 394
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ VA L + V EKKLR F G V+ V + +DK+GKSRG+ VE++H + ++ +
Sbjct: 153 ILVARLSFDVTEKKLRREFEEYGPVKRVRLVMDKNGKSRGYAFVEYEHKADMKEAYKAAD 212
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKS--IGMGLGANG 262
+ + RR+ V ++R R E K +G GLGA G
Sbjct: 213 GKKIEGRRVLVDVER--------GRTVENWKPRRLGGGLGAPG 247
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
G++ I+ D +TG+ +G VEF + KA +MH++E GR L + +
Sbjct: 253 EFEGFGEIVGCRIITDRETGRGKGFGYVEFATSADAAKAQAEMHQYELDGRPLNVDFSTP 312
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R+ G DR ++K+G+ +P N +F+ NL +
Sbjct: 313 ----RQKPDAGKTNDR---------ANKYGDKRS-APS------------NTLFLGNLSF 346
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
++E+F G + V + D+D G +GFG V+F EA ++ LN Q++ R
Sbjct: 347 DCTNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGR 406
Query: 229 RITVRMDRVADRLD 242
I R+D A R D
Sbjct: 407 NI--RIDYAAPRED 418
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
I +FV NL + +DE LR F G++ I D++ G+ +GFG VEF +A ++
Sbjct: 233 IKNLFVGNLSWNIDEDWLRREFEGFGEIVGCRIITDRETGRGKGFGYVEFATSADAAKAQ 292
Query: 218 SMLNNQNLFERRITV 232
+ ++ L R + V
Sbjct: 293 AEMHQYELDGRPLNV 307
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V I D+ G RG V F++PD R A+ +M+ E + L + A + +
Sbjct: 212 FSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRA-QKR 270
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + + R + +KF + V+V N+D V
Sbjct: 271 AEREQI-----LRRQFEEKRKEQITKFKGS-------------------NVYVKNIDDDV 306
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+++LRE F G + + ++ D G+S+GFG V F EA ++++ + +F R+
Sbjct: 307 TDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGY-MFHRK 363
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 38/186 (20%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V ++ + GK +G V+F+S D A+ K++ +++ + + V+
Sbjct: 125 GTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKS---- 180
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
DR +L + +K+ N Y V NLD + E+
Sbjct: 181 --------DR----VLPSPDAKYTNLY---------------------VKNLDPGITEEL 207
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RM 234
L+E F GK+ +V IA D+ G SRGFG V F++P +A ++ +N L + + V R
Sbjct: 208 LQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRA 267
Query: 235 DRVADR 240
+ A+R
Sbjct: 268 QKRAER 273
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I V+V NL +D L+E+F G V + ++A +DGKS+G G V+F+ A +I
Sbjct: 100 IGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIE 159
Query: 219 MLNNQNLFERRITV-RMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKV 277
LN + +++I V + + +DR+ LP N P + LLQEK
Sbjct: 160 KLNGSIVGDKQIYVGKFVKKSDRV-----LPSPDAKYTNLYVKNLDP--GITEELLQEKF 212
Query: 278 QKLSLIIS 285
+ I+S
Sbjct: 213 SEFGKIVS 220
>gi|67517282|ref|XP_658521.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|40746790|gb|EAA65946.1| hypothetical protein AN0917.2 [Aspergillus nidulans FGSC A4]
gi|259488796|tpe|CBF88530.1| TPA: RNA splicing factor (Pad-1), putative (AFU_orthologue;
AFUA_1G15810) [Aspergillus nidulans FGSC A4]
Length = 552
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 39/189 (20%)
Query: 49 ISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL----V 103
I+ VG V +I+ D +G+ +G VEF+ V A+ + G+KL +
Sbjct: 191 IAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAI------QLTGQKLLGIPI 244
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
I + E + R+ +N+ + GN + + P ++++
Sbjct: 245 IAQLTEAEKNRQ---------------ARNSEASSGNKH------------SAPF-HRLY 276
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V N+ + +DE L+ VF G++E V++ D+ G+SRG+G V+F P +A +++ +N
Sbjct: 277 VGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGY 336
Query: 224 NLFERRITV 232
+L R I V
Sbjct: 337 DLGGRAIRV 345
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 37/186 (19%)
Query: 52 LSTVGDVTYVE--ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
L G + +VE + + +TG+ RG V S D + AV K+ +GR L K +
Sbjct: 21 LQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQKLDGHIVQGRAL--KASFS 78
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ G G V+ S KVF+ NL +
Sbjct: 79 QP--YKKAGKEGPVEVAASH------------------------------TKVFIGNLPW 106
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
VD+ L E FR GKV +I D+D G+SRGFG V P EA +++ L+ + R
Sbjct: 107 GVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGR 166
Query: 229 RITVRM 234
R+ V++
Sbjct: 167 RLRVKL 172
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G+V VE+ D TG+ RG V + + V A + + +E GR L
Sbjct: 111 FKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPL-------- 162
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R N G + S L Q N++ P G N+V+V NL +
Sbjct: 163 ---RVNSGPPPQRETSFSRLPQRE-----NSFSRGPG--ARGGETFDSSNRVYVGNLSWN 212
Query: 171 VDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
VD+ L +FR GKV + ++ D+D G+S+GFG V + E ++ LN L R
Sbjct: 213 VDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGRA 272
Query: 230 ITVRMDRVADR 240
I V + R
Sbjct: 273 IRVSVAEAKPR 283
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
++FV NL + V+ +L ++F+ AG VE VE+ DK G+SRGFG V E +
Sbjct: 92 QLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQ 151
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQK 279
N L R + V R RLP+ S G GA G D +N + V
Sbjct: 152 FNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNRVY---VGN 208
Query: 280 LSLIISNRNTKEVLER----WDFKLQYDKSS 306
LS + + + + D K+ YD+ S
Sbjct: 209 LSWNVDDSALESLFREKGKVMDAKVVYDRDS 239
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|21928059|gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|225879144|dbj|BAH30642.1| hypothetical protein [Arabidopsis thaliana]
gi|332010031|gb|AED97414.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
Length = 309
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
SP ++ I C +K+F+ + Y +DE LRE F G+V + + LD++ G+SRGFG
Sbjct: 27 SPSLFQA--IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFG 84
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F A +I L+ ++L R + V
Sbjct: 85 FVTFTSSEAASSAIQALDGRDLHGRVVKV 113
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 83/166 (50%), Gaps = 24/166 (14%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G++T +++ D+ GK +G V F+ + AV ++ K R+L + A + K R
Sbjct: 18 GEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA-QKKNERL 76
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ +L + + ++ + Y + G+N ++V NLD +D+ +
Sbjct: 77 D---------ELRSHFEKQRAERSSRY--------TQGVN------LYVKNLDDSIDDTR 113
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L++ F + G + + ++ D + +S+GFG V F +P EA ++++ +N
Sbjct: 114 LKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMN 159
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-R 233
KLRE+F G++ + ++ +D++GKS+GFG V F A ++ LN + +R++ V R
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 234 MDRVADRLD 242
+ +RLD
Sbjct: 69 AQKKNERLD 77
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 28/181 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G + ++ D++GK +G V F+ + ++AV++M+ E G+++
Sbjct: 131 DEKLKEI--FSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQV 188
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A + KG R+ + R + Q+ +++ G+N +
Sbjct: 189 YVGRA-QKKGERQTE-----LKRKFEQMKQDRMTRY-------------QGVN------L 223
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
+V NLD +D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 224 YVKNLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNG 282
Query: 223 Q 223
+
Sbjct: 283 R 283
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+
Sbjct: 46 FSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN------------------ 86
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + +G V++ N +
Sbjct: 87 -----------------GMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDM 129
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++KL+E+F G ++ + D+ GKS+GFG V F+ +A +++ +N + + +++
Sbjct: 130 DDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVY 189
Query: 232 V 232
V
Sbjct: 190 V 190
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 25 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIE 83
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 84 KMNGMLLNDRKVFVGRFKSRKERGAE 109
>gi|340719729|ref|XP_003398300.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2A-like
[Bombus terrestris]
Length = 211
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYD----KSSDENDAASVNTASKT 320
L + WL+Q KVQK++L+I+N NTKEVLE+WDFK+ Y+ S+++N S+
Sbjct: 69 LSQIQEWLIQRKVQKITLVITNVNTKEVLEKWDFKVDYEGQSSNSANDNTKNSLPEVGTK 128
Query: 321 DSTNAEKD 328
D + +K+
Sbjct: 129 DVKSIQKE 136
>gi|156101519|ref|XP_001616453.1| U1 small nuclear ribonucleoprotein 70 kDa [Plasmodium vivax Sal-1]
gi|148805327|gb|EDL46726.1| U1 small nuclear ribonucleoprotein 70 kDa, putative [Plasmodium
vivax]
Length = 452
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 48/75 (64%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ L Y V+EKKL++ F + GK++ V+I DK+ K +G+G +EF+H + ++ +
Sbjct: 100 IFIGRLSYDVNEKKLKKEFEVYGKIKKVKIIYDKNFKPKGYGFIEFEHTKSFNDAYNLAD 159
Query: 222 NQNLFERRITVRMDR 236
+ + RRI V ++R
Sbjct: 160 GKKIDNRRILVDVER 174
>gi|84996059|ref|XP_952751.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303748|emb|CAI76125.1| hypothetical protein, conserved [Theileria annulata]
Length = 320
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ VG+V +I+ D GK +G IVEF + +A+ +++ +V+ +
Sbjct: 29 HMKQVGEVIRADIIEDYEGKSKGCGIVEFADEESASRAIAELNDTLILVLMVVLDRQIFV 88
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK----VFVAN 166
+ R N N + +G L P+ G + + V V N
Sbjct: 89 REDRENY---------------NTTRGYGRFLRLRPRMDSHSGYSARSSGRGGTSVIVTN 133
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
L ++ K+L+++F+ G V ++ +DG+S+G G V F + A ++I+M N+ L
Sbjct: 134 LQWRTSWKELKDLFKNCGLVIRADVLTHEDGRSKGVGKVVFANEYSARKAITMYNDYVLD 193
Query: 227 ERRITV 232
R+I +
Sbjct: 194 GRKIGI 199
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
+V+V NL +W+EL+D F+NCG + A++ D +G V F +E++A++AI M
Sbjct: 128 SVIVTNLQWRTSWKELKDLFKNCGLVIRADVLTHEDGRSKGVGKVVFANEYSARKAITMY 187
Query: 573 DRTRIDGKIIDV 584
+ +DG+ I +
Sbjct: 188 NDYVLDGRKIGI 199
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV + L++ + G+V +I D +GKS+G G VEF A ++I+ L
Sbjct: 11 RVYVGNLSWKVRWQDLKDHMKQVGEVIRADIIEDYEGKSKGCGIVEFADEESASRAIAEL 70
Query: 221 NN------QNLFERRITVRMDR 236
N+ + +R+I VR DR
Sbjct: 71 NDTLILVLMVVLDRQIFVREDR 92
>gi|409049565|gb|EKM59042.1| hypothetical protein PHACADRAFT_169505 [Phanerochaete carnosa
HHB-10118-sp]
Length = 578
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 50 SHLSTVGDVTYVEI-LNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
S + G+V + ++ +TGK RG V F SP+ V KA+ ++ E GR + I ++V
Sbjct: 327 SEFAECGEVVSARVQMDRNTGKSRGFGFVTFASPEAVDKALE-LNGKEIDGRPINIDKSV 385
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E +D + + + + FG+ L FV NL
Sbjct: 386 E---------------KDQNQVRERRAKAFGDATSAPSSVL-------------FVGNLS 417
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
+ E +L EVF G V++V + D++ G+ +GFG VEF+ A ++ L Q +
Sbjct: 418 FDATEDQLWEVFSDYGSVKSVRMPTDRESGRPKGFGYVEFEDVESAKKAHEGLAGQEIAG 477
Query: 228 RRITVRMD 235
R VR+D
Sbjct: 478 R--AVRLD 483
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
+FV L + VD L F G+V + + +D++ GKSRGFG V F P EAV L
Sbjct: 311 IFVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGFVTFASP-EAVDKALEL 369
Query: 221 NNQNLFERRITV 232
N + + R I +
Sbjct: 370 NGKEIDGRPINI 381
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DD+G+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQSELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF---- 173
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR +R+L YG + +E V++ N +
Sbjct: 174 KSRR--------ERELE-------------YGA--KVME--------FTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+K+LRE+F G +V++ +D G+SRGFG V + + EA +++S +N + + R I
Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + A + FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I +N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|124802073|ref|XP_001347353.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23494932|gb|AAN35266.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 246
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
T++V NLPP +TW+EL+D FR G + A++K + + IG+V ++E+ AK AID +
Sbjct: 169 TLIVYNLPPQVTWKELKDLFRKHGRVVRADLKNEDNSSKELIGVVIMENEYEAKNAIDAL 228
Query: 573 DRTRIDGKIIDVTF 586
+ DG I+ V +
Sbjct: 229 NFCNFDGYILKVNY 242
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL +KV L+ + AG V V+I D G+S+G G VE+ EA ++IS L
Sbjct: 13 RVYVGNLPWKVTWPILKNHMKKAGDVVRVDIFEDTQGRSKGCGIVEYATYEEAQEAISSL 72
Query: 221 NNQNLFERRITVRMDR 236
N+ L +R I VR DR
Sbjct: 73 NDSKLEDRLIFVREDR 88
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 54/217 (24%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
+H+ GDV V+I D G+ +G IVE+ + + ++A++ ++ + + R + ++E E
Sbjct: 30 NHMKKAGDVVRVDIFEDTQGRSKGCGIVEYATYEEAQEAISSLNDSKLEDRLIFVREDRE 89
Query: 110 DKGG---RRNMG--------------------------------------GGGGVDRDLS 128
+ G +R GGG RD
Sbjct: 90 ENSGNFEKRKFNNVRKDKFYESRRRRDYDYRKEYRRDDYRRDFRRDEFRRGGGEFRRDYR 149
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188
+F G +F S NC LI V NL +V K+L+++FR G+V
Sbjct: 150 ------RDEFRRGGG---EFRRSSKRNCTLI----VYNLPPQVTWKELKDLFRKHGRVVR 196
Query: 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
++ + + G V ++ EA +I LN N
Sbjct: 197 ADLKNEDNSSKELIGVVIMENEYEAKNAIDALNFCNF 233
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + D GK RG + F+ +AV++++ + +G+ L + A +
Sbjct: 239 FSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKH 298
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R Q +++ + + G+N +F+ NLD +
Sbjct: 299 ------------ERQQELKKQYETARL-------EKLAKYQGVN------LFIKNLDDSI 333
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KL++ F G + +V++ D+ G SRGFG V F P EA ++I+ N Q
Sbjct: 334 DDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQ 385
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ DD G RG V F++ R A+ ++ +++ + V K
Sbjct: 146 FSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKK 205
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L+ +KF N Y V N+D +
Sbjct: 206 --------------DRQSKLEEVKAKFTNIY---------------------VKNIDLET 230
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
+++ ++F GK+ + + D +GK RGFG + F+ A +++ LN Q L+
Sbjct: 231 SQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLY 290
Query: 227 ERRITVRMDR 236
R + +R
Sbjct: 291 VGRAQKKHER 300
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 51/220 (23%)
Query: 24 RIET-GAPLEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQS 81
++ET GA L V +D +A LY I S +G V+ + + D T G A V F
Sbjct: 32 KVETSGASLYVGE-LDPSVSEALLYDI--FSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 82 PDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNT 141
+ RKA+ +++ KG+ I + D R+ G
Sbjct: 89 HEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGN--------------------- 127
Query: 142 YGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
+++ NL +D K L E F G + + ++A D +G SRG
Sbjct: 128 --------------------IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRG 167
Query: 202 FGTVEFDHPVEAVQSIS-----MLNNQNLFERRITVRMDR 236
FG V F++ +A +I ++N+Q ++ + DR
Sbjct: 168 FGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDR 207
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 36/173 (20%)
Query: 63 ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGG 122
I N +T + RG V + + V KA+ R++ GR L + +A +G R
Sbjct: 168 IYNRETDQSRGFGFVSMSTVEEVVKAIEMFDRYDINGRTLTVNKAAP-RGSRAERP---- 222
Query: 123 VDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182
RD P F +V+V N+ ++VD +L ++F
Sbjct: 223 -PRDFE-----------------PAF------------RVYVGNIPWQVDNLRLEQLFSE 252
Query: 183 AGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
GKVE I D++ G+SRGFG V +E +I+ L+ +L R I V M
Sbjct: 253 YGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIAALDGSDLDGRAIKVSM 305
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL + ++ L ++F AG VE+ E+ +++ +SRGFG V E V++I M
Sbjct: 137 KIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGFVSMSTVEEVVKAIEM 196
Query: 220 LNNQNLFERRITV 232
+ ++ R +TV
Sbjct: 197 FDRYDINGRTLTV 209
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 38/191 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ D ++A++ M+ RK+ +
Sbjct: 94 FSTFGNILSCKVVCDEHGS-RGFGFVHFETHDAAQRAISTMNGMLLNDRKVFV------- 145
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L +F N Y V NL V
Sbjct: 146 -------GHFKSRREREAELGARVMEFTNIY---------------------VKNLQVDV 177
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
DE+ L+++F GK+ +V++ D G SRGFG V F+ EA +++ +N + + R +
Sbjct: 178 DERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 237
Query: 232 VRMDRVADRLD 242
V R RL+
Sbjct: 238 V--GRAQKRLE 246
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D +G RG V F+ + +KAV M+ E GR L + A + +
Sbjct: 186 FSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRA-QKR 244
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ +++ G+N ++V NLD +
Sbjct: 245 LERQN-----ELKRRFEQMKQDRLNRYQ-------------GVN------LYVKNLDDSI 280
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 281 NDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 329
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NL+ +D K L + F G + + ++ D+ G SRGFG V F+ A ++IS
Sbjct: 73 VGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHDAAQRAIS 131
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 132 TMNGMLLNDRKVFV 145
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 85/170 (50%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R + Q+ +++ G+N ++V NLD +
Sbjct: 267 --QKKVERQTELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 228
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 229 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 264
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 265 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTGMN 309
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 74 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVSV------- 125
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 126 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 157
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 158 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 217
Query: 232 V 232
V
Sbjct: 218 V 218
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 53 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 111
Query: 219 MLNNQNLFERRITV 232
+N L +R+++V
Sbjct: 112 KMNGMLLNDRKVSV 125
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 49/202 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+I +T+G V + + D T K G A V + + + R+A+ + E G++
Sbjct: 54 EAILYEI--FNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRALEALKYNEICGKQ 111
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R++ G
Sbjct: 112 VRIMWSHRDPSLRKSGAG-----------------------------------------N 130
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ N+D +D K L + F G++ + ++A D+ G+SRG+G V FD A ++IS
Sbjct: 131 VFIKNIDESIDTKALYDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDAN 190
Query: 219 --MLNNQNLFERRITVRMDRVA 238
L N+ +F R +RV+
Sbjct: 191 GMQLGNKKIFVAPFVRRSERVS 212
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+++ NLD +++ +LRE+F G + + ++ +D+ G S GFG V F P +A ++S
Sbjct: 345 LYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMH 404
Query: 219 --MLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLG 259
+++N+ L+ R R+ +RL +R G GM +G
Sbjct: 405 LKLVHNKPLYVGLAEKREQRL-NRLQ--MRYKVGHNRDGMPMG 444
>gi|344293100|ref|XP_003418262.1| PREDICTED: RNA-binding protein 7-like [Loxodonta africana]
Length = 268
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLEAKVTEEILFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 85/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A ++
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------QK 268
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 269 KVERQTELKRKFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 36/180 (20%)
Query: 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 120 SAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV-------- 170
Query: 113 GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
G ++ A L + +F N V++ N +D
Sbjct: 171 ------GRFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDMD 203
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I V
Sbjct: 204 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD ++ K L + G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFVKNLDKSINNKVLYDTASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + D GK +G V F + + KAV++++ E G+ + + A + +
Sbjct: 252 FSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQKKR 311
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ R A SK+ G+N +F+ NLD +
Sbjct: 312 ERMEEL------RRQYEATKLEKLSKY-------------QGVN------LFIKNLDDTI 346
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + + + +
Sbjct: 347 DSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLY 406
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 407 VALAQRKD 414
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL + +++L+E+F G + + + D +GKS+GFG V FD+ +AV+++ LN
Sbjct: 234 VFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELN 293
Query: 222 NQNLFERRITV-RMDRVADRLD 242
N+ + + I V R + +R++
Sbjct: 294 NKEIAGQPIYVGRAQKKRERME 315
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDI------KFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572
V VKNL P T QEL++ F G I K E K KG G V FD+ A +A+D +
Sbjct: 234 VFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKG-FGFVNFDNHNDAVKAVDEL 292
Query: 573 DRTRIDGKIIDV 584
+ I G+ I V
Sbjct: 293 NNKEIAGQPIYV 304
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++I S +G V+ + + D T K G A V F D +A+ ++ +GR
Sbjct: 64 EALLFEI--FSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDLNYSLIEGRP 121
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D RRN G
Sbjct: 122 CRIMWSQRDPSLRRNGEGN----------------------------------------- 140
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F G++ + ++A D+ G S+ FG V ++ A +I +N
Sbjct: 141 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVN 200
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 201 GMLLNDREVFV 211
>gi|297793663|ref|XP_002864716.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
gi|297310551|gb|EFH40975.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
SP ++ I C +K+F+ + Y +DE LRE F G+V + LD++ G+SRGFG
Sbjct: 27 SPSLFQA--IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVETRVILDRETGRSRGFG 84
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F A +I L+ ++L R + V
Sbjct: 85 FVTFTSSEAASSAIQALDGRDLHGRVVKV 113
>gi|148693757|gb|EDL25704.1| mCG9666, isoform CRA_a [Mus musculus]
Length = 116
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 VSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +FV NLD ++ K L + G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 34/188 (18%)
Query: 47 YQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
Y+ ++ VT + + +TG+PRG V F + D + KA+ + GR++ ++
Sbjct: 19 YRYEGFRSISLVTLQIVYDRNTGRPRGFGFVSFSTEDGLNKAMEQNGSL-INGREIRVEV 77
Query: 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN 166
A G + ++ + QN N NKVFV++
Sbjct: 78 A------------KGSLGKNSENVRQNR--------------------NYNDENKVFVSS 105
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
L + ++ LR+ F GK+E+ +I D+ G+SRG G V+F E +IS +N L
Sbjct: 106 LSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREEMNNAISTMNGSTL 165
Query: 226 FERRITVR 233
R+I VR
Sbjct: 166 DGRQIAVR 173
>gi|426370525|ref|XP_004052213.1| PREDICTED: RNA-binding protein 7 isoform 2 [Gorilla gorilla
gorilla]
Length = 220
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DD+G+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQSELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF---- 173
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR +R+L G V++ N +
Sbjct: 174 KSRR--------ERELE-----------------------YGAKVMEFTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+K+LRE+F G +V++ +D G+SRGFG V + + EA +++S +N + + R I
Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + A + FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I +N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D+TG +G V F++ + K++ K++ G+K+ + + K
Sbjct: 119 FTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDF 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ LRE+F G++ + ++ +DG SRGFG V F+ P A ++ LN + L E +
Sbjct: 204 SDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPL 263
Query: 232 V--RMDRVADRLDGPVRLPEGLKS 253
R + A+R R E LKS
Sbjct: 264 YVGRAQKKAERQKELKRKFEQLKS 287
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
G +T +++ + G RG V F+ PD +A +++ E +G+ L + A +
Sbjct: 212 FEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRA-QK 270
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ + R L +++ G+N ++V NLD
Sbjct: 271 KAERQK-----ELKRKFEQLKSERLTRYQ-------------GVN------LYVKNLDDT 306
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
+D+++LR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N +
Sbjct: 307 IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 358
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + V+++ D+ GK +G V F+ + +KAV++M+ E G+ + + A + K R
Sbjct: 215 GQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA-QKKDDRH 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + Q+ S ++ GIN ++V NLD +D+++
Sbjct: 274 TE-----LKHKFEQVTQDKSIRYQ-------------GIN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L++ F G + + ++ + + G+S+GFG V F P EA +++S +N
Sbjct: 310 LQKEFSPFGTITSTKV-MTEGGRSKGFGFVCFSSPEEATKAVSEMN 354
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 37/190 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++++D+ G +G V F++ + +A+ KM+ RK+ + K
Sbjct: 119 FSAFGNILSCKVVSDENGS-KGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQK 177
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+G G + +F N V++ N ++
Sbjct: 178 EREAELGTG--------------TKEFTN---------------------VYIKNFGDRM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L +F G++ +V++ D+ GKS+GFG V F+ +A +++ +N + L + I
Sbjct: 203 DDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIY 262
Query: 232 V-RMDRVADR 240
V R + DR
Sbjct: 263 VGRAQKKDDR 272
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G P+ V DL +A LY+ S+ G + + + D T + G A V F+ P
Sbjct: 7 GCPMASLYVGDLHPDVTEAMLYE--KFSSAGPILSIRVYRDVITRRSLGYASVNFEQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KG+ + I + D RR S GN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRR--------------------SGVGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
VF+ NL+ +D K L + F G + + ++ D++G S+G G
Sbjct: 101 -----------------VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A ++I +N L +R++ V
Sbjct: 143 VHFETEEAAERAIEKMNGMLLNDRKVFV 170
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ D++G+ RG V + + + +KAV +M+ E GR +
Sbjct: 204 DKRLKEI--FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + G + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQGELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSTKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S GD+ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF---- 173
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR +R+L YG + +E V++ N +
Sbjct: 174 KSRR--------ERELE-------------YGA--KVME--------FTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+K+L+E+F G +V++ +D G+SRGFG V + + EA ++++ +N + + R +
Sbjct: 203 DDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A + FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I +N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 183 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 242
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 243 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 278
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 279 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 337
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 338 VALAQRKEDR 347
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 34/239 (14%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------- 141
+ I + D R++ G G ++L + N + S FGN
Sbjct: 82 IRIMWSQRDPSLRKS-GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKG 140
Query: 142 YGLSPQFLESLG------INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK 195
YG E +N L+N N + + KL+++F G + + ++ +
Sbjct: 141 YGFVHFETEEAANKSIDRVNGMLLNGK--KNFGEDMTDDKLKDMFEKYGTITSHKVMIKD 198
Query: 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV--RMDRVADRLDGPVRLPEGLK 252
DGKSRGFG V F+ P A Q++ LN + + E + R + A+R R E LK
Sbjct: 199 DGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|392589109|gb|EIW78440.1| hypothetical protein CONPUDRAFT_60298, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 213
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I M
Sbjct: 11 QLFVGNLPYRVRWQDLKDLFRRAGTVLRADVSLGPDNRSRGYGTVLLATAEDAGRAIDMF 70
Query: 221 NNQNLFERRITVRMDRVADRLD 242
N R + VR DR+ + LD
Sbjct: 71 NGYTWQTRVLEVRPDRLGNLLD 92
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 167 LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L + V + L+++FR AG V ++AL DG+SRGFGTV + + A ++ M +
Sbjct: 158 LPFHVQWQDLKDLFRTAGAVVRADVALGPDGRSRGFGTVSYANEESAERARRMFD 212
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G + V+++ D+ GK +G V F+ + +KAV++M+ E G+ + + A + K R
Sbjct: 190 GQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA-QKKDDRH 248
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + Q+ S ++ GIN ++V NLD +D+++
Sbjct: 249 TE-----LKHKFEQVTQDKSIRYQ-------------GIN------LYVKNLDDGIDDER 284
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L++ F G + + ++ + + G+S+GFG V F P EA +++S +N
Sbjct: 285 LQKEFSPFGTITSTKV-MTEGGRSKGFGFVCFSSPEEATKAVSEMN 329
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 37/190 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++++D+ G +G V F++ + +A+ KM+ RK+ + K
Sbjct: 94 FSAFGNILSCKVVSDENGS-KGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQK 152
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+G G + +F N V++ N ++
Sbjct: 153 EREAELGTG--------------TKEFTN---------------------VYIKNFGDRM 177
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L +F G++ +V++ D+ GKS+GFG V F+ +A +++ +N + L + I
Sbjct: 178 DDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIY 237
Query: 232 V-RMDRVADR 240
V R + DR
Sbjct: 238 VGRAQKKDDR 247
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NL+ +D K L + F G + + ++ D++G S+G G V F+ A ++I
Sbjct: 73 VGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIE 131
Query: 219 MLNNQNLFERRITV 232
+N L +R++ V
Sbjct: 132 KMNGMLLNDRKVFV 145
>gi|388582374|gb|EIM22679.1| RNA-binding domain-containing protein, partial [Wallemia sebi CBS
633.66]
Length = 202
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+FV NL Y+V + L+++FR AG V ++AL D +S+G+G V ++A ++I +
Sbjct: 18 HLFVGNLPYRVRWQDLKDLFRKAGTVLRADVALGLDNRSKGYGNVLMGSEIDAAKAIELY 77
Query: 221 NNQNLFERRITVRMDRVADRLDGP 244
N R + VR DR+ D P
Sbjct: 78 NGYVWQTRTLEVRPDRLPPEYDLP 101
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL Y + ++L++ FR AG V E+A + DG S+G+G + F EA+Q + M +
Sbjct: 142 IFVGNLPYNMQWQELKDTFRAAGNVIRAEVATNHDGTSKGYGIITFADESEAIQGVQMFD 201
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 504 SNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVR 558
+N + + ++ + V NLP + WQEL+D FR G++ AE+ D G++
Sbjct: 127 ANLATASTPSLTNRNIFVGNLPYNMQWQELKDTFRAAGNVIRAEVATNHDGTSKGYGIIT 186
Query: 559 FDSEWTAKRAIDMMD 573
F E A + + M D
Sbjct: 187 FADESEAIQGVQMFD 201
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------- 141
+ I + D R++ G G ++L + N + S FGN
Sbjct: 82 IRIMWSQRDPSLRKS-GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKG 140
Query: 142 YGLSPQFLESLG------INCPLIN------KVFVANLDYKVDEKKLREVFRLAGKVENV 189
YG E +N L+N V+V N + + KL+E+F G + +
Sbjct: 141 YGFVHFETEEAANKSIDRVNGMLLNGKKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 200
Query: 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV--RMDRVADRLDGPVRL 247
++ + DGKSRGFG V F+ P A Q++ LN + + E + R + A+R R
Sbjct: 201 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 260
Query: 248 PEGLK 252
E LK
Sbjct: 261 FEQLK 265
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 191 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 250
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 251 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 286
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 287 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 345
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 346 VALAQRKEDR 355
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 183 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 242
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 243 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 278
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 279 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 337
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 338 VALAQRKEDR 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 34/239 (14%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------- 141
+ I + D R++ G G ++L + N + S FGN
Sbjct: 82 IRIMWSQRDPSLRKS-GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKG 140
Query: 142 YGLSPQFLESLG------INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK 195
YG E +N L+N N + + KL+E+F G + + ++ +
Sbjct: 141 YGFVHFETEEAANKSIDRVNGMLLNGK--KNFGEDMTDDKLKEMFEKYGTITSHKVMIKD 198
Query: 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV--RMDRVADRLDGPVRLPEGLK 252
DGKSRGFG V F+ P A Q++ LN + + E + R + A+R R E LK
Sbjct: 199 DGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D++G +G V F++ + K+++K++ G+++ + + + K
Sbjct: 119 FSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ +G + +F N V+V N
Sbjct: 179 EREKELG--------------EKAKRFTN---------------------VYVKNFGEDF 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
+ LRE+F G++ + ++ DGKS+GFG V F+ P A ++++ LN + + E
Sbjct: 204 SDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVE 259
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
G +T ++++ D GK +G V F+ P+ KAV ++ E +G+ L + A +
Sbjct: 212 FEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRA-QK 270
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ + R L S++ G+N ++V N+D
Sbjct: 271 KAERQQ-----ELKRKFEQLKMERLSRYQ-------------GVN------LYVKNIDDN 306
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D+++LR+ F G + + ++ L+ DG+S+GFG V F EA ++++ +N + + + +
Sbjct: 307 IDDERLRKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPL 365
Query: 231 TVRM-DRVADR 240
V + R DR
Sbjct: 366 YVALAQRKEDR 376
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 48/246 (19%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDTMNYDPLKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVN 160
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLS 281
L +R+ V + R + L E K N +D ++ LL+E +K
Sbjct: 161 GMLLNGKRVFV--GKFIPRKEREKELGEKAKRFTNVYVKNFG--EDFSDDLLREMFEKYG 216
Query: 282 LIISNR 287
I S++
Sbjct: 217 RITSHK 222
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NLD +D K L + F L G + + ++A D DGKSRG+G V F++ A ++I+ LN
Sbjct: 124 VFVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLN 183
Query: 222 NQNLFERRITV 232
+ E+ + V
Sbjct: 184 GMMIGEKAVYV 194
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
++V NL VD++KLR++F G++ + ++ +D++ G SRGFG V F + + ++I +
Sbjct: 341 LYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAM 400
Query: 221 N 221
+
Sbjct: 401 H 401
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G+V VE++ D TG+ RG V S D V A + + +E +GR L +
Sbjct: 112 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVN----- 166
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI-NKVFVANLDY 169
G R+ +++ SP+F G L N+++V NL +
Sbjct: 167 --------SGPPPQRE-------------SSFSRSPRFGGGGGGGESLEGNRLYVGNLSW 205
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
VD L F GKV + ++ D++ G+SRGFG V + E +I LN L R
Sbjct: 206 SVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGR 265
Query: 229 RITVRMDRVADR 240
I V + R
Sbjct: 266 AIRVSVAEARPR 277
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL + VD +L +F AG VE VE+ DK G+SRGFG V E +
Sbjct: 93 KLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQ 152
Query: 220 LNNQNLFERRITV 232
N L R + V
Sbjct: 153 FNGYELEGRALRV 165
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + K++ K++ G+K+ + + K
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDL 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E++LR +F GK+ + +I DGKS+GFG V F+ P A ++ LN + + + +
Sbjct: 204 TEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPL 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRRFEALK 286
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVED 110
G +T +I++ D GK +G V F+SP+ AV ++ E G+ L + A +
Sbjct: 212 FEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRA-QK 270
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R+ + R AL +++ G+N ++V NLD
Sbjct: 271 KAERQQ-----ELKRRFEALKMERLNRYQ-------------GVN------LYVKNLDDT 306
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D+++LR+ F G + + ++ ++ D +S+GFG V F P EA ++++ +N + + + +
Sbjct: 307 IDDERLRKEFSPFGTITSAKVMME-DNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 365
Query: 231 TVRM-DRVADR 240
V + R DR
Sbjct: 366 YVALAQRKEDR 376
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 28/171 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
G +T ++ D GK RG V F++PD +AV +++ E + G+ L + A
Sbjct: 212 FEKYGSITSHRVMMKD-GKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRA--Q 268
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R M + R L +++ G+N ++V NLD
Sbjct: 269 KKNERQME----LKRRFEQLKMERLTRYH-------------GVN------LYVKNLDDT 305
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+D+++LR+ F G + + ++ LD +G+S+GFG V F P EA ++++ +N
Sbjct: 306 IDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMN 355
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 48/246 (19%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A+L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EATLFE--KFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDTIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD K+D K + + F G + + ++A D+ G+S+G+G V F+ A SI +N
Sbjct: 101 VFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVN 160
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLS 281
L E+++ V R R + L E K N +D+ L E +K
Sbjct: 161 GMLLNEKKVFV--GRFISRKEREKELGEKAKLFTNVYVKNFG--EDLTEEALHEMFEKYG 216
Query: 282 LIISNR 287
I S+R
Sbjct: 217 SITSHR 222
>gi|396499673|ref|XP_003845532.1| hypothetical protein LEMA_P008400.1 [Leptosphaeria maculans JN3]
gi|312222113|emb|CBY02053.1| hypothetical protein LEMA_P008400.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A ++S L
Sbjct: 93 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVSTL 152
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 153 SNQNLMGRLVYVREDREAE 171
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
Query: 21 MFQRIETGAPLEVPVVMDLIQGDASLYQIS-HLSTVGDVTYVEILNDDTGKPRGSAIVEF 79
M Q I + + V + + D + + + G+V + ++L G +G IVE+
Sbjct: 80 MMQSIRDSSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEY 139
Query: 80 QSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFG 139
+ + + AV+ + GR + ++E E + R + G +
Sbjct: 140 ATREQAQNAVSTLSNQNLMGRLVYVREDREAE-PRFSTPGNARGGYEGGMGGGPRGGGHF 198
Query: 140 NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKD 196
G + +V+VANL Y V + L+++FR A G V ++ + D
Sbjct: 199 GGGGGFGGSPGAGAGAGAGGRQVYVANLPYNVGWQDLKDLFRQAAHTGSVIRADVHIAPD 258
Query: 197 GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
G+ +G G V F+ P +A +I+ N + R + VR DR
Sbjct: 259 GRPKGSGIVAFETPEDARNAINQFNGYDWQGRNLEVREDR 298
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N ++V NL + + L E+F GKVE EI + +G+SRG G VEF+ +A +IS
Sbjct: 388 NTIYVRNLPWSTSNEDLIELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKEADAETAISK 447
Query: 220 L 220
Sbjct: 448 F 448
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 483 GGSGQASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGD 542
GG GG P D +S+ SS +R V V NL + W L+D R G+
Sbjct: 59 GGYQSYGAARGGSSRPAESKDMMQSIRDSSQQDR-RVYVGNLSYDVKWHHLKDFMRQAGE 117
Query: 543 IKFAEI------KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+ FA++ KG G+V + + A+ A+ + + G+++ V
Sbjct: 118 VLFADVLLLPNGMSKG-CGIVEYATREQAQNAVSTLSNQNLMGRLVYV 164
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 85/167 (50%), Gaps = 26/167 (15%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A +
Sbjct: 211 FGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------Q 264
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + + R + Q+ +++ G+N ++V NLD +D++
Sbjct: 265 KKVERQTELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDE 305
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 306 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 351
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 259
Query: 232 V 232
V
Sbjct: 260 V 260
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD GK RG V F+ + +KAV+ M+ + G+ + + A + K R+
Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E F G +V++ D GKSRGFG V F+ +A +++ +N ++L + I
Sbjct: 203 DDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 87/172 (50%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKK 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R + Q+ +++ G+N ++V NLD +
Sbjct: 270 VERQT-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 306 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMN------------------ 159
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +
Sbjct: 160 -----------------GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|311270146|ref|XP_003132786.1| PREDICTED: putative RNA-binding protein 11-like [Sus scrofa]
Length = 237
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D+DG + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I V+
Sbjct: 72 GIRLYGRPINVQY 84
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A ++
Sbjct: 190 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------QK 243
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 244 KVERQTELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 284
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 285 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 329
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+
Sbjct: 94 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMN------------------ 134
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +
Sbjct: 135 -----------------GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 177
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 178 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 237
Query: 232 V 232
V
Sbjct: 238 V 238
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 73 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 131
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 132 KMNGMLLNDRKVFVGRFKSRKEREAE 157
>gi|398396806|ref|XP_003851861.1| hypothetical protein MYCGRDRAFT_104845 [Zymoseptoria tritici
IPO323]
gi|339471741|gb|EGP86837.1| hypothetical protein MYCGRDRAFT_104845 [Zymoseptoria tritici
IPO323]
Length = 498
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 2/183 (1%)
Query: 57 DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
DV + ++L G +G IVE+ + D + A+N + GR + ++E E + R
Sbjct: 118 DVLFADVLLLPNGMSKGCGIVEYATRDQAQTAINTLSNSPLMGRLIYVREDRETEP--RF 175
Query: 117 MGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKL 176
G G G VFV N+ Y V + L
Sbjct: 176 PGAQPARGGFGGGFAPRGGYGGGMGMQGGGMGGGMGGGMGGGGRSVFVNNIPYTVGWQDL 235
Query: 177 REVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
+++FR G V ++ + DG ++G G V FD P +A +I N + R + VR DR
Sbjct: 236 KDLFRQGGNVVRADVHMAPDGSAKGSGVVTFDTPDDAQNAIQHFNGYDWQGRMLEVREDR 295
Query: 237 VAD 239
A+
Sbjct: 296 YAN 298
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENV--EIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+V+V NL Y V L++ R G+++ + ++ L +G S+G G VE+ +A +I+
Sbjct: 92 RVYVGNLSYDVKWHHLKDHMRQDGQLDVLFADVLLLPNGMSKGCGIVEYATRDQAQTAIN 151
Query: 219 MLNNQNLFERRITVRMDR 236
L+N L R I VR DR
Sbjct: 152 TLSNSPLMGRLIYVREDR 169
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
+V V N+P T+ WQ+L+D FR G++ A++ D G+V FD+ A+ AI
Sbjct: 220 SVFVNNIPYTVGWQDLKDLFRQGGNVVRADVHMAPDGSAKGSGVVTFDTPDDAQNAIQHF 279
Query: 573 DRTRIDGKIIDV 584
+ G++++V
Sbjct: 280 NGYDWQGRMLEV 291
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ V NL + L E+F+ G V+ EI + +G+SRG G V+F +A +I
Sbjct: 403 IHVKNLPWSTSNDDLVELFQTIGTVDRAEIQYEANGRSRGAGVVQFGSQGDAATAIEKFQ 462
Query: 222 NQNLFERRITVRMDRVAD 239
+ R + + R D
Sbjct: 463 GYSYGGRPLGLDYARYPD 480
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+ + + A ++
Sbjct: 183 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA------QK 236
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 237 KVERQTELKRKFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 277
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 278 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 322
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 22/210 (10%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRR-------NMGGGGG---------VDRDLSAL---LQNNSSKFGNTY 142
+ I + D RR N G G +R + + L N+ F +
Sbjct: 82 VRIMWSQRDPSLRRSGVVCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRF 141
Query: 143 GLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGF 202
+ LG V++ N +D+++L+++F G +V++ D+ GKS+GF
Sbjct: 142 KSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGF 201
Query: 203 GTVEFDHPVEAVQSISMLNNQNLFERRITV 232
G V F+ +A +++ +N + L + I V
Sbjct: 202 GFVSFERHEDAQKAVDEMNGKELNGKHIYV 231
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+++F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|157787052|ref|NP_001099368.1| RNA binding motif protein 11 [Rattus norvegicus]
gi|149059696|gb|EDM10579.1| RNA binding motif protein 11 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 144
Score = 58.9 bits (141), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|428176376|gb|EKX45261.1| hypothetical protein GUITHDRAFT_87179 [Guillardia theta CCMP2712]
Length = 137
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
KVFV NL + + ++L+ F + G+V ++ ++ G+SRG G VEF P A ++ M+
Sbjct: 61 KVFVGNLSWSTNSEQLKNHFDVCGEVVRADVFTERSGRSRGCGIVEFTSPDGAHNAMMMM 120
Query: 221 NNQNLFERRITVRMDR 236
NN L R I VR DR
Sbjct: 121 NNSELDGRSIFVREDR 136
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
+H G+V ++ + +G+ RG IVEF SPD A+ M+ E GR + ++E
Sbjct: 78 NHFDVCGEVVRADVFTERSGRSRGCGIVEFTSPDGAHNAMMMMNNSELDGRSIFVRE 134
>gi|331246414|ref|XP_003335840.1| RNP domain-containing protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 510
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 6/170 (3%)
Query: 72 RGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK---GGRRNMGGGGGVDRDLS 128
+G +VEF + +AV +++ GR++ ++E E++ G GG GG S
Sbjct: 183 KGCGVVEFSTRQEAERAVKELNDTPLFGRQVFVREDREEEARYGSLAVSGGNGGRGPLPS 242
Query: 129 ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188
+ G + G +C ++ ++ L + V + L+++FR AG +
Sbjct: 243 GFSSRGTGSVGRGFSGGRSSFSEGGQSCKQLS---ISGLPFNVGWQDLKDMFRSAGSIIR 299
Query: 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238
++ D DG G GTV F+ +A +ISM N R + VR DR A
Sbjct: 300 ADVYFDADGSPTGNGTVIFETSRDAQNAISMFNGFEYEGRTMEVREDRSA 349
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 32/130 (24%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG---------------------- 197
N+V+V NL + V L++ R G V E+ + +G
Sbjct: 121 NRVYVGNLAFSVKWSDLKDFMREVGNVVFAEVMVLANGMSKVRLLLQFTVSTKEIQITNV 180
Query: 198 KSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVR----------L 247
S+G G VEF EA +++ LN+ LF R++ VR DR + G + L
Sbjct: 181 SSKGCGVVEFSTRQEAERAVKELNDTPLFGRQVFVREDREEEARYGSLAVSGGNGGRGPL 240
Query: 248 PEGLKSIGMG 257
P G S G G
Sbjct: 241 PSGFSSRGTG 250
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 470 SRYGS----GGNEMDYGGGSGQ--ASIQSGGYGNPRAGLDSNRSMNQSSNIERDTVVVKN 523
+RYGS GGN GG G + S G G+ G RS + +
Sbjct: 223 ARYGSLAVSGGN-----GGRGPLPSGFSSRGTGSVGRGFSGGRSSFSEGGQSCKQLSISG 277
Query: 524 LPPTITWQELRDKFRNCGDIKFAEIKGKGDI-----GLVRFDSEWTAKRAIDMMDRTRID 578
LP + WQ+L+D FR+ G I A++ D G V F++ A+ AI M + +
Sbjct: 278 LPFNVGWQDLKDMFRSAGSIIRADVYFDADGSPTGNGTVIFETSRDAQNAISMFNGFEYE 337
Query: 579 GKIIDV 584
G+ ++V
Sbjct: 338 GRTMEV 343
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 42/194 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G+++ +I+ D+ G RG V F++ + R A+ K
Sbjct: 118 FSAFGNISSCKIVCDEHGS-RGYGFVHFETDEAARIAIEK-------------------- 156
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ +L N F + + LE L + N V+V NL +
Sbjct: 157 ---------------VNGMLLNGKKVFVGRFMSRRERLEVLDLGMRKFNNVYVKNLSEET 201
Query: 172 DEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISMLN-NQN----L 225
D++KLRE+F L GK+ + ++ +D KS+ FG V F++P A +++ LN N N L
Sbjct: 202 DDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKIL 261
Query: 226 FERRITVRMDRVAD 239
+ R +++R A+
Sbjct: 262 YVGRAQTKIERQAE 275
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 30/200 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTG-KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
D L +I L G + +++ DD+ K + V F++P+ +KAV ++ + G+
Sbjct: 203 DEKLREIFEL--YGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKI 260
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
L + A + K R+ +L + + N Y G+N
Sbjct: 261 LYVGRA-QTKIERQA---------ELKEKFERIRKERINRYQ---------GVN------ 295
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD +D+K+LR+ F G + + ++ + ++G+S+GFG V F P EA ++I +N
Sbjct: 296 LFVKNLDDNIDDKRLRKEFAQFGTITSAKV-MTENGRSKGFGFVYFSSPEEATKAIVEMN 354
Query: 222 NQNLFERRITVRM-DRVADR 240
+ + R + V + R DR
Sbjct: 355 EKIIEARPLYVALAQRKEDR 374
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 72/195 (36%), Gaps = 48/195 (24%)
Query: 49 ISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107
ST G V V + D T + G A V F P +A++ M+ KGR + I
Sbjct: 27 FKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDTMNFDIIKGRPIRITWY 86
Query: 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
D R+ S GN VF+ L
Sbjct: 87 QRDPSLRK--------------------SGVGN---------------------VFIKKL 105
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-----MLNN 222
D +D K L + F G + + +I D+ G SRG+G V F+ A +I +LN
Sbjct: 106 DKSIDNKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNG 164
Query: 223 QNLFERRITVRMDRV 237
+ +F R R +R+
Sbjct: 165 KKVFVGRFMSRRERL 179
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D++G +G V F++ + K++++++ G+K+ + + + K
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRK 178
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 179 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDM 203
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+++F G + + ++ + DGKSRGFG V F+ P A Q++ LN + + E +
Sbjct: 204 TDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCM 263
Query: 232 V--RMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 264 YVGRAQKKAERQQELKRKFEQLK 286
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D GK RG V F+ PD +AV +++ E K + + K
Sbjct: 212 FEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKK 271
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+ + R L +++ G+N ++V NLD +
Sbjct: 272 AERQQ-----ELKRKFEQLKLERLNRYQ-------------GVN------LYVKNLDDSI 307
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LR+ F G + + ++ ++ +G+S+GFG V F P EA ++++ +N + + + +
Sbjct: 308 DDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLY 366
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 367 VALAQRKEDR 376
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 24 EAMLFE--KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDMIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A +SI +N
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVN 160
Query: 222 NQNLFERRITV 232
L +++ V
Sbjct: 161 GMLLNGKKVYV 171
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV+ M+ E G+++ + A + K R+
Sbjct: 183 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRA-QKKVERQ 241
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 242 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 277
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 278 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 322
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 22/210 (10%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLFE--KFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRN--------MGGGGGVDRD-----------LSALLQNNSSKFGNTY 142
+ I + D R++ G G V + ++ +L N+ F +
Sbjct: 82 VRIMWSQRDPSLRKSGVVCDENGPKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPF 141
Query: 143 GLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGF 202
+ LG V++ N +D++ L+++F G +V++ D+ GKS+GF
Sbjct: 142 KSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGF 201
Query: 203 GTVEFDHPVEAVQSISMLNNQNLFERRITV 232
G V F+ +A +++ ++N + L ++I V
Sbjct: 202 GFVSFERHEDAQKAVDVMNGKELNGKQIYV 231
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+K+FV L + DE L+E F G+V + +D+D G+SRGFG V F EA +++
Sbjct: 40 SKLFVGGLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALT 99
Query: 219 MLNNQNLFERRITV 232
L+ Q+L R+I V
Sbjct: 100 ALDGQDLHGRQIRV 113
>gi|294945914|ref|XP_002784883.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239898138|gb|EER16679.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 174
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD+ E +L + + G V +V+I DGKS+G G VEF ++I LN
Sbjct: 8 VYVGNLDWTTTEDELGDHMKKVGPVVSVDIMTRNDGKSKGCGIVEFKEASSVAKAIDTLN 67
Query: 222 NQNLFERRITVRMDR 236
L ER+I VR DR
Sbjct: 68 ETQLGERKIFVREDR 82
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
H+ VG V V+I+ + GK +G IVEF+ V KA++ ++ + RK+ ++E
Sbjct: 25 HMKKVGPVVSVDIMTRNDGKSKGCGIVEFKEASSVAKAIDTLNETQLGERKIFVRE 80
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD GK +G V F+ + +KAV++M+ + G+ + + A + K R+
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KGR + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G S+G+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
++++L+E+F G +V++ D +GKS+GFG V F+ +A +++ +N +++
Sbjct: 203 NDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
>gi|355715837|gb|AES05418.1| RNA binding motif protein 7 [Mustela putorius furo]
Length = 262
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 40/190 (21%)
Query: 44 ASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
A L++ + + + +V Y N +T + RG V + + KAV+ HR+E GR L
Sbjct: 960 ARLFEQAGVVEIAEVIY----NRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLT 1015
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+ N ++ G+ P+ E P +++
Sbjct: 1016 V----------------------------NKAAPRGSQPERPPRVFE------PAF-RMY 1040
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNN 222
V NL + VD +L +VF GKV + D++ G+SRGFG V E +I+ +
Sbjct: 1041 VGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDG 1100
Query: 223 QNLFERRITV 232
Q L R I V
Sbjct: 1101 QTLDGRTIRV 1110
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
KVFV NL Y VD ++L +F AG VE E+ +++ +SRGFG V EA +++ M
Sbjct: 944 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 1003
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
+ L R +TV ++ A R P R P
Sbjct: 1004 FHRYELDGRLLTV--NKAAPRGSQPERPP 1030
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 87/184 (47%), Gaps = 32/184 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F+S + ++AV +M+ + G+ + + A V
Sbjct: 210 FSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKV 269
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + ++M Q + G+ K++V NLD
Sbjct: 270 ERQAELKHM------------FEQMKKERIRRCQGV----------------KLYVKNLD 301
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
VD+++LR+ F G + V++ + ++G SRGFG + F P EA ++++ +N + L +
Sbjct: 302 DTVDDEQLRKEFSSFGSITRVKV-MKEEGYSRGFGLICFSSPEEAAKALTEMNGRVLGSK 360
Query: 229 RITV 232
+++
Sbjct: 361 ALSI 364
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQS A+ +M+ R + +
Sbjct: 113 TLYE--HFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
K D A L++ +S+F N Y +
Sbjct: 170 APFKPRK--------------DREAELRSRASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L+ VF GK +V++ D GKS+GFG V F+ A +++ +N ++
Sbjct: 195 KNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKD 254
Query: 225 L 225
+
Sbjct: 255 M 255
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VFV NLD VD K L E F GK+ + ++ D G S+G+ V F A +I
Sbjct: 97 IGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIE 155
Query: 219 MLNNQNLFERRITV-----RMDRVAD 239
+N + + +R + V R DR A+
Sbjct: 156 QMNGKVINDRPVFVAPFKPRKDREAE 181
>gi|149059695|gb|EDM10578.1| RNA binding motif protein 11 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 176
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGP 244
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEP 94
>gi|452004844|gb|EMD97300.1| hypothetical protein COCHEDRAFT_1164036 [Cochliobolus
heterostrophus C5]
Length = 475
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 97 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 156
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R P
Sbjct: 157 SNQNLMGRLVYVREDREAEPRFSAP 181
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Query: 21 MFQRIETGAPLEVPVVMDLIQGDASLYQIS-HLSTVGDVTYVEILNDDTGKPRGSAIVEF 79
M Q I + + V + + D + + + G+V + ++L G +G IVE+
Sbjct: 84 MMQNIRDSSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEY 143
Query: 80 QSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFG 139
+ + + AV + GR + ++E E + R + + +
Sbjct: 144 ATREQAQNAVATLSNQNLMGRLVYVREDREAE------------PRFSAPGGRGDFGGGM 191
Query: 140 NTYGLSPQFLESLGINCPL-INKVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDK 195
G + P +V+V+NL Y V + L+++FR A G+V ++ +
Sbjct: 192 GRGGYGGFGGNNAAAGGPTGARQVYVSNLPYNVGWQDLKDLFRQAANNGQVLRADVHIAP 251
Query: 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
DG+ +G G V F+ P +A +I+ N + R + VR DR
Sbjct: 252 DGRPKGSGVVAFETPEDARNAITQFNGYDWQGRNLEVREDR 292
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N ++V NL + + L E+F GKVE EI + +G+SRG G VEF+ +A SI+
Sbjct: 374 NIIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSIAK 433
Query: 220 L 220
Sbjct: 434 F 434
>gi|345799921|ref|XP_853905.2| PREDICTED: RNA-binding protein 7 [Canis lupus familiaris]
Length = 262
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|451853414|gb|EMD66708.1| hypothetical protein COCSADRAFT_158789 [Cochliobolus sativus
ND90Pr]
Length = 477
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 94 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 153
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R P
Sbjct: 154 SNQNLMGRLVYVREDREAEPRFSAP 178
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 26/226 (11%)
Query: 21 MFQRIETGAPLEVPVVMDLIQGDASLYQIS-HLSTVGDVTYVEILNDDTGKPRGSAIVEF 79
M Q I + + V + + D + + + G+V + ++L G +G IVE+
Sbjct: 81 MMQNIRDSSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEY 140
Query: 80 QSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK------GGRRNMGGGGGVDRDLSALLQN 133
+ + + AV + GR + ++E E + GGR + GGG G N
Sbjct: 141 ATREQAQNAVATLSNQNLMGRLVYVREDREAEPRFSAPGGRGDFGGGMGRGGGYGGFSGN 200
Query: 134 NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLA---GKVENVE 190
N++ G T +V+V+NL Y V + L+++FR A G+V +
Sbjct: 201 NAAAGGPT----------------GARQVYVSNLPYNVGWQDLKDLFRQAANNGQVLRAD 244
Query: 191 IALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236
+ + DG+ +G G V F+ P +A +I+ N + R + VR DR
Sbjct: 245 VHIAPDGRPKGSGVVAFETPEDARNAITQFNGYDWQGRNLEVREDR 290
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N ++V NL + + L E+F GKVE EI + +G+SRG G VEF+ +A SI+
Sbjct: 376 NIIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSIAK 435
Query: 220 L 220
Sbjct: 436 F 436
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 85/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D+ GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD GK +G V F+ + +KAV++M+ + G+ + + A + K R+
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KGR + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G S+G+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
++++L+E+F G +V++ D +GKS+GFG V F+ +A +++ +N +++
Sbjct: 203 NDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ K K+ +
Sbjct: 239 TLYE--HFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFV 295
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 296 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 320
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 321 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRD 380
Query: 225 L 225
+
Sbjct: 381 I 381
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D GK +G V F S + +KAV +M+ + G+ + + A V
Sbjct: 336 FSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 395
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K++V NLD
Sbjct: 396 ERQAELKQM------------FEQLKRERIRGYQGV----------------KLYVKNLD 427
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+D++KLR F G + V++ + ++G+S+GFG + F +A +++ +N + L +
Sbjct: 428 DTIDDEKLRNEFSSFGSIIRVKV-MQQEGQSKGFGFICFSSLEDATKAMIEMNGRFLGSK 486
Query: 229 RITV 232
I++
Sbjct: 487 PISI 490
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 223 IGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 281
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 282 EMNGRLLKSCKVFVGRFKNRKDREAE 307
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD G+ +G V FQ + + A++ M+ E GR++ A ++
Sbjct: 314 GPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRA------QK 367
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ + R L QN ++ G+N +++ NLD +D++
Sbjct: 368 KLERQTQLQRHFEQLKQNRIVRYQ-------------GVN------LYIKNLDDDIDDEN 408
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ +G+S+GFG V F P EA +++ +N
Sbjct: 409 LRKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSAPEEATTAVTEMN 453
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
+ SLY S+ G++ +++ DD G +G V F+ + +A+ KM+ K+
Sbjct: 211 NKSLYDA--FSSFGNILSCKVITDDNGS-KGYGFVHFEHRESAERAIQKMNGILLNDLKI 267
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ G +D + L + +F N V
Sbjct: 268 FV--------------GHFKSRKDRESELGAQTREFTN---------------------V 292
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222
++ N +DE +L ++F G +V++ D G+S+GFG V F +A +I +N
Sbjct: 293 YIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNG 352
Query: 223 QNLFERRI 230
+ L R+I
Sbjct: 353 KELNGRQI 360
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VFV NL+ ++ K L + F G + + ++ D +G S+G+G V F+H A ++I
Sbjct: 197 IGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQ 255
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN+ +F R DR ++
Sbjct: 256 KMNGILLNDLKIFVGHFKSRKDRESE 281
>gi|149041583|gb|EDL95424.1| RNA binding motif protein 7 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 265
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|58261060|ref|XP_567940.1| telomere maintenance protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|58270766|ref|XP_572539.1| telomere maintenance protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134115941|ref|XP_773358.1| hypothetical protein CNBI2970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255982|gb|EAL18711.1| hypothetical protein CNBI2970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228797|gb|AAW45232.1| telomere maintenance protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
gi|57230022|gb|AAW46423.1| telomere maintenance protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 951
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I N
Sbjct: 173 LFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDNRSRGYGTVLMGSREDAARAIDRYN 232
Query: 222 NQNLFERRITVRMDRVADRLD 242
R + VR DR+ +
Sbjct: 233 GYTWQTRTLEVRPDRLPPEYE 253
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV+NL + + L+++ R AG + ++A D GK RGFGT F +A +++ + N
Sbjct: 516 IFVSNLPLSMQWQDLKDMLRPAGTIIRADVATDAHGKPRGFGTALFATEADATRAVLLFN 575
Query: 222 NQNLFERRITVRMDR 236
++ + RI ++R
Sbjct: 576 DREIGGFRIRAHLER 590
>gi|400593014|gb|EJP61025.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 481
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG V ++ L +G S+G G VE+ +A Q+++ L
Sbjct: 98 RVYVGNLSYDVKWHHLKDFMRQAGDVLFADVLLLPNGMSKGCGIVEYATREQAQQAVTQL 157
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 158 SNQNLMGRLVYVREDREAE 176
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 31/201 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ GDV + ++L G +G IVE+ + + ++AV ++ GR + ++E
Sbjct: 117 MRQAGDVLFADVLLLPNGMSKGCGIVEYATREQAQQAVTQLSNQNLMGRLVYVRE----- 171
Query: 112 GGRRNMGGGGGVDRDLSALL------QNNSSKFGNTYGLSPQF-----LESLGINCPLIN 160
DR+ G +P F
Sbjct: 172 ------------DREAEPRFIGSGGSNRGGFGGNIHGGFNPAFNGHHGGPGGPGAPGGGR 219
Query: 161 KVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+++VANL + V + L+++FR A G V ++ DG+ +G G V F+ P +A +I
Sbjct: 220 QIYVANLPFNVGWQDLKDLFRQAARNGGVIRADVHSGPDGRPKGSGIVVFESPDDARSAI 279
Query: 218 SMLNNQNLFERRITVRMDRVA 238
N + R I VR DR A
Sbjct: 280 QQFNGYDWQGRTIEVREDRFA 300
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + L E+F GKVE EI + G+SRG G V+FD A +IS
Sbjct: 383 IYVRNLPWSTSNDDLIELFTTIGKVEQAEIQYEPSGRSRGSGVVKFDTAETAETAISKF 441
>gi|58261062|ref|XP_567941.1| telomere maintenance protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|58270768|ref|XP_572540.1| telomere maintenance protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134115943|ref|XP_773357.1| hypothetical protein CNBI2970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255981|gb|EAL18710.1| hypothetical protein CNBI2970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228798|gb|AAW45233.1| telomere maintenance protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
gi|57230023|gb|AAW46424.1| telomere maintenance protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 931
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I N
Sbjct: 153 LFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDNRSRGYGTVLMGSREDAARAIDRYN 212
Query: 222 NQNLFERRITVRMDRVADRLD 242
R + VR DR+ +
Sbjct: 213 GYTWQTRTLEVRPDRLPPEYE 233
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV+NL + + L+++ R AG + ++A D GK RGFGT F +A +++ + N
Sbjct: 496 IFVSNLPLSMQWQDLKDMLRPAGTIIRADVATDAHGKPRGFGTALFATEADATRAVLLFN 555
Query: 222 NQNLFERRITVRMDR 236
++ + RI ++R
Sbjct: 556 DREIGGFRIRAHLER 570
>gi|410971965|ref|XP_003992431.1| PREDICTED: RNA-binding protein 7 [Felis catus]
Length = 266
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 28/209 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G++T ++ DD G +G + F+ + K V ++ E G+ L
Sbjct: 225 GEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLY------------ 272
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
G + A+L+ + + ++L+ G+N ++V NL +VD+
Sbjct: 273 --AGRAQKKTEREAMLRQKAEESKQE-----RYLKYQGMN------LYVKNLSDEVDDDA 319
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235
LRE+F +G + + ++ D GKS+GFG V F EA ++++ +N + + + + V +
Sbjct: 320 LRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVAL- 378
Query: 236 RVADRLDGPVRLPEGLKSIGMGLGANGAP 264
A R D E MG+GA P
Sbjct: 379 --AQRKDVRRAQLEANMQARMGMGAMSRP 405
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F GK+ + ++A D +G S+G+G V F+ A ++I
Sbjct: 113 VGNIFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQ 172
Query: 219 MLNNQNLFERRITV-----RMDRVAD 239
+N + + + + V R DR D
Sbjct: 173 TVNQKEIEGKIVYVGPFQKRADRPQD 198
>gi|354494485|ref|XP_003509367.1| PREDICTED: RNA-binding protein 7-like [Cricetulus griseus]
gi|344237164|gb|EGV93267.1| RNA-binding protein 7 [Cricetulus griseus]
Length = 265
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|27753952|ref|NP_659197.2| RNA-binding protein 7 [Mus musculus]
gi|55976586|sp|Q9CQT2.1|RBM7_MOUSE RecName: Full=RNA-binding protein 7; AltName: Full=RNA-binding
motif protein 7
gi|18141295|gb|AAL60585.1|AF458961_1 RNA binding motif protein 7 [Mus musculus]
gi|12837596|dbj|BAB23878.1| unnamed protein product [Mus musculus]
gi|12839998|dbj|BAB24729.1| unnamed protein product [Mus musculus]
gi|12842963|dbj|BAB25804.1| unnamed protein product [Mus musculus]
gi|74181616|dbj|BAE30073.1| unnamed protein product [Mus musculus]
gi|109733079|gb|AAI16932.1| RNA binding motif protein 7 [Mus musculus]
gi|111600453|gb|AAI19039.1| RNA binding motif protein 7 [Mus musculus]
gi|148693760|gb|EDL25707.1| mCG9666, isoform CRA_d [Mus musculus]
Length = 265
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|121705054|ref|XP_001270790.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
gi|119398936|gb|EAW09364.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
Length = 514
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 28/189 (14%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
T G+++ V I+ D D+G+ RG VE+ S KA E GRK+ + A
Sbjct: 279 EFETFGELSGVRIVTDRDSGRSRGFGYVEYVSAADAAKAYKAKKDTELDGRKINLDYAT- 337
Query: 110 DKGGR--RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANL 167
GR N GGG DR Q + FG+ + P + +FV NL
Sbjct: 338 ---GRPANNQQGGGFQDR-----AQARARSFGDQ-------------SSPESDTLFVGNL 376
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
+ +E ++E+F G + + + D D G+ +GFG V+F EA ++ + LN L
Sbjct: 377 PFSANEDSVQELFGEKGSIVGIRLPTDPDSGRPKGFGYVQFASVDEAREAFNSLNGAELD 436
Query: 227 ERRITVRMD 235
R VR+D
Sbjct: 437 GR--PVRLD 443
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEF 207
+F+ NL + VDE LR+ F G++ V I D+D G+SRGFG VE+
Sbjct: 262 LFIGNLSWNVDEDWLRQEFETFGELSGVRIVTDRDSGRSRGFGYVEY 308
>gi|32493337|gb|AAH54774.1| RNA binding motif protein 7 [Mus musculus]
Length = 265
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|294871774|ref|XP_002766035.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239866600|gb|EEQ98752.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 224
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NLD+ + E +L + + G V +VEI DGKS+G G VEF ++I LN
Sbjct: 8 VYVGNLDWTITEDELGDHMKAVGPVVSVEIMTRHDGKSKGCGIVEFKEASSVDKAIDTLN 67
Query: 222 NQNLFERRITVRMDR 236
L ER+I VR DR
Sbjct: 68 ETQLGERKIFVREDR 82
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL ++ + L+++FR G+V V+IA DG+S+GF TV F+ ++I N
Sbjct: 147 VYVGNLPWRTAWQDLKDLFRECGEVIRVDIAEGWDGRSKGFATVLFEDEEGTAKAIEKFN 206
Query: 222 NQNLFERRITVRMDR 236
+ R++ VR D+
Sbjct: 207 EYDFQGRKLLVREDK 221
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
H+ VG V VEI+ GK +G IVEF+ V KA++ ++ + RK+ ++E
Sbjct: 25 HMKAVGPVVSVEIMTRHDGKSKGCGIVEFKEASSVDKAIDTLNETQLGERKIFVRE 80
>gi|380027194|ref|XP_003697314.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2A-like
[Apis florea]
Length = 211
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYD 303
L + WL+Q KVQK++L+I+N NTKEVLE+WDFK+ Y+
Sbjct: 69 LGQIQEWLIQRKVQKITLVITNVNTKEVLEKWDFKVDYE 107
>gi|350421101|ref|XP_003492733.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2A-like
[Bombus impatiens]
Length = 211
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSS 306
L + WL+Q KVQK++L+I+N NTKEVLE+WDF++ Y+ S
Sbjct: 69 LSQIQEWLIQRKVQKITLVITNVNTKEVLEKWDFRVDYEGQS 110
>gi|302409198|ref|XP_003002433.1| nucleolysin TIA-1 [Verticillium albo-atrum VaMs.102]
gi|261358466|gb|EEY20894.1| nucleolysin TIA-1 [Verticillium albo-atrum VaMs.102]
Length = 443
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK +++ LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 46 APEPNKRALYIGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNQKGYNYGFVEYDDPGAA 105
Query: 214 VQSISMLNNQNLFERRI 230
+++ LN + + E R+
Sbjct: 106 ARAMQTLNGRRVHEIRV 122
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F +A +++S
Sbjct: 141 HIFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 200
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
++ + L R I R + + + + ++++GM
Sbjct: 201 MDGEWLGSRAI--RCNWANQKGQPSIAQQQAMQAMGM 235
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+K+F+ L + DE LR+ F G V +V+I LD+D G+SRGFG V F P EA ++
Sbjct: 45 SKLFIGGLAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVALQ 104
Query: 219 MLNNQNLFERRITVRMDRVADRLD 242
++ + L R+I R+D D+ D
Sbjct: 105 EMDGRELAGRQI--RVDYATDKSD 126
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D+ G+ RG V F+ + +KAV+ M+ E GR L + A + +
Sbjct: 211 FSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R++ + R + Q +++ G+N ++V NLD +
Sbjct: 270 SERQS-----ELKRRFEQMKQERVNRYQ-------------GVN------LYVKNLDDII 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDEKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + +A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDENGS-RGFGFVHFETHEAANQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N Y V N + +
Sbjct: 171 -------GHFKSRQEREAELGARALEFTNIY---------------------VKNFEGDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D++ L+E+F GK +V++ +D++G+SRGFG V F+ EA +++S +N + L R +
Sbjct: 203 DDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 52/220 (23%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGL 144
+A++ M+ KGR + I + D G R+ S GN
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRK--------------------SGIGN---- 100
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGT 204
+F+ NLD +D K L + F G + + ++ D++G SRGFG
Sbjct: 101 -----------------IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENG-SRGFGF 142
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITV-----RMDRVAD 239
V F+ A Q+I+ +N L +R++ V R +R A+
Sbjct: 143 VHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAE 182
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 45/242 (18%)
Query: 11 VEQIAHQDFPMFQRIETGAPLEVPVVMDLIQGDASL-----YQISHLSTVGDVTYVEILN 65
E++A P+ ++ + P V +L G+ S + G++ ++
Sbjct: 198 AEEVAE---PIVKKSKVEEPAAEEGVKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVIT 254
Query: 66 D-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVD 124
D +TG+ +G VEF + KA +MH +E GR+L +
Sbjct: 255 DRETGRAKGFGYVEFANAADAAKAQKEMHEYELDGRQLNV-------------------- 294
Query: 125 RDLS---ALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFR 181
D S A N N YG P N +F+ N+ ++ + ++EVF
Sbjct: 295 -DFSTPRAKPDANGGARANKYGDK---------RSPPSNTLFLGNVSFECSNESIQEVFA 344
Query: 182 LAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240
G + V + D+D G +GFG V+F EA ++ LN Q++ R +R+D R
Sbjct: 345 EYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDIGGR--AIRIDYATPR 402
Query: 241 LD 242
D
Sbjct: 403 ED 404
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQS A+ +M+ + R++++
Sbjct: 225 TLYE--HFSGFGRILSSKVMSDDQGS-KGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLV 281
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
RD A L+ +S+F N Y V
Sbjct: 282 APFRSR--------------RDREAELRTRTSEFTNVY---------------------V 306
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L+ VF G+ +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 307 KNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKD 366
Query: 225 L 225
+
Sbjct: 367 I 367
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 322 FSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRA---- 377
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + + C + K+++ NLD V
Sbjct: 378 --------------------QKKEERQAELKQVFEELKRDGARRCQGV-KLYIKNLDDTV 416
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D+ +LR F G + V++ ++++G+ +GFG V F P EA ++++ +N + L
Sbjct: 417 DDDRLRRAFSSFGSISRVKV-MEEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVL 469
>gi|311263944|ref|XP_003129925.1| PREDICTED: RNA-binding protein 7-like [Sus scrofa]
Length = 265
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 57/251 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY++ ST+G V + + D T + G A V FQ +A++ ++ G+
Sbjct: 33 EAQLYEL--FSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDVLNFNVVNGKP 90
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------- 141
+ I + D R++ G G ++L + N + S+FGN
Sbjct: 91 IRIMYSQRDPALRKS-GVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKG 149
Query: 142 YGLSPQFLESLG-------INCPLIN-----------------------KVFVANLDYKV 171
YG QF E +N L+N V+V NL V
Sbjct: 150 YGFV-QFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGERGGGPTTFNNVYVKNLHESV 208
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
DE KL+EVF GK+ +V I D +GKS+GFG V F+ A +++ L+ + E +
Sbjct: 209 DEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAW 268
Query: 230 ITVRMDRVADR 240
+ R + A+R
Sbjct: 269 VVCRAQKKAER 279
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
VG +T V I+ D GK +G V F+ + +AV K+ ++ K + + K
Sbjct: 217 FGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCRAQKK 276
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL-GINCPLINKVFVANLDYK 170
R + +L A + LE + G N +++ NL+
Sbjct: 277 AER---------EAELKAKFDAERR----------ERLEKMAGAN------LYIKNLEDT 311
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VD+ KLRE+F G + + + D G SRG V F EA ++++ +N +
Sbjct: 312 VDDAKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGK 364
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD ++D K L + F G + + ++A D G S+G+G V+F A Q+I
Sbjct: 107 VGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAID 166
Query: 219 MLNNQNLFERRITV-RMDRVADRLDGP 244
+N L ++++ V R +R GP
Sbjct: 167 KVNGMLLNDKQVYVGPFQRRGERGGGP 193
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D+ G+ +G V F+ + +KAV M+ E GR L + A
Sbjct: 211 FSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + + R + Q +++ G+N ++V NLD +
Sbjct: 267 --QKRLERQSELKRKFEQMKQERVNRYQ-------------GVN------LYVKNLDDGI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ + + G+S+GFG V F P EA ++++ +N +
Sbjct: 306 DDERLRKEFSPYGTITSAKV-MTEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 117/272 (43%), Gaps = 64/272 (23%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG 139
+A++ M+ KGR + I + D G R++ G G ++L + N + S FG
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKS-GVGNVFIKNLDDSIDNKALYDTFSAFG 123
Query: 140 N----------------------TYGLSPQFLESLGINCPLIN--KVFVANLDYK----- 170
N T+ + + +E++ N L+N KVFV + +
Sbjct: 124 NILSCKVVCDENGSRGYGFVHFETHEAATRAIETM--NGMLLNDRKVFVGHFKSRKEREA 181
Query: 171 --------------------VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP 210
+D+ +LRE+F GK +V++ +D +G+S+GFG V F+
Sbjct: 182 EVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKH 241
Query: 211 VEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
EA ++++ +N + + R + V R RL+
Sbjct: 242 EEAQKAVADMNGKEINGRLLYV--GRAQKRLE 271
>gi|307107761|gb|EFN56003.1| hypothetical protein CHLNCDRAFT_145396 [Chlorella variabilis]
Length = 301
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI----KGKG-DIGLVRFDSEWTAKRAIDMMD 573
VVV NLP TWQ+L+D F CGDI+ A++ +G+ G+VRF ++ A+ A++ M+
Sbjct: 225 VVVHNLPWDCTWQQLKDAFTPCGDIERADVVFDSRGRSRGFGIVRFPTKEMAETAVNTMN 284
Query: 574 RTRIDGKIIDV 584
T I G+++ V
Sbjct: 285 NTTIGGRVVSV 295
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V V NL + ++L++ F G +E ++ D G+SRGFG V F A +++ +
Sbjct: 224 QVVVHNLPWDCTWQQLKDAFTPCGDIERADVVFDSRGRSRGFGIVRFPTKEMAETAVNTM 283
Query: 221 NNQNLFERRITVRMDRVA 238
NN + R ++VR+DR A
Sbjct: 284 NNTTIGGRVVSVRIDRFA 301
>gi|405119735|gb|AFR94507.1| telomere maintenance protein [Cryptococcus neoformans var. grubii
H99]
Length = 888
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I N
Sbjct: 107 LFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDNRSRGYGTVLMGSREDAARAIDRYN 166
Query: 222 NQNLFERRITVRMDRVADRLD 242
R + VR DR+ +
Sbjct: 167 GYTWQTRTLEVRPDRLPPEYE 187
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKV--ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+FV+NL + + L+++ R AG + + +A D GK RGFGT F +A +++ +
Sbjct: 450 IFVSNLPLSMQWQDLKDMLRPAGTIIRADKSVATDAHGKPRGFGTALFATEADATRAVLL 509
Query: 220 LNNQNLFERRITVRMDR 236
N++ + RI ++R
Sbjct: 510 FNDREIGGFRIRAHLER 526
>gi|77735925|ref|NP_001029659.1| RNA-binding protein 7 [Bos taurus]
gi|91207337|sp|Q3MHY8.1|RBM7_BOVIN RecName: Full=RNA-binding protein 7; AltName: Full=RNA-binding
motif protein 7
gi|75775082|gb|AAI04519.1| RNA binding motif protein 7 [Bos taurus]
gi|296480264|tpg|DAA22379.1| TPA: RNA-binding protein 7 [Bos taurus]
gi|440909197|gb|ELR59131.1| RNA-binding protein 7 [Bos grunniens mutus]
Length = 262
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V ++ D+ G+ RG V F + +KAV++M+ E G+ + + A
Sbjct: 211 FAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRA---- 266
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + G + R + Q+ ++ G+N ++V NLD +
Sbjct: 267 --QKRLERQGELKRKFELIKQDRIQRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ D +SRGFG V F P EA ++++ +N +
Sbjct: 306 DDERLRKEFAPYGTITSAKVMTDGP-QSRGFGFVCFSSPEEATKAVTEMNGR 356
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 58/253 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LYQ S G + + + D T + G A + FQ P A++ M+ KGR
Sbjct: 24 EAMLYQ--KFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTMNYDVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFGNT--------------Y 142
+ I + D G R++ G G +++ + N + S FGN Y
Sbjct: 82 IRIMWSQRDPGLRKS-GVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDERGSKGY 140
Query: 143 GL---------------------------------SPQFLESLGINCPLINKVFVANLDY 169
G + E LG +++ N
Sbjct: 141 GFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGE 200
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+++KL+EVF G+ +V + D+ G+SRGFG V F H +A +++ +N + L +
Sbjct: 201 DYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKV 260
Query: 230 ITVRMDRVADRLD 242
I V R RL+
Sbjct: 261 IYV--GRAQKRLE 271
>gi|330913095|ref|XP_003296184.1| hypothetical protein PTT_05285 [Pyrenophora teres f. teres 0-1]
gi|311331880|gb|EFQ95720.1| hypothetical protein PTT_05285 [Pyrenophora teres f. teres 0-1]
Length = 481
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 95 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVASL 154
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQNL R + VR DR A+ R P
Sbjct: 155 SNQNLMGRLVYVREDREAEPRFSAP 179
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+V+VANL Y V + L+++FR A G+V ++ DG+ +G G V F+ P +A +I
Sbjct: 214 QVYVANLPYTVGWQDLKDLFRQAANNGQVLRADVHTAPDGRPKGSGIVAFETPEDARNAI 273
Query: 218 SMLNNQNLFERRITVRMDR 236
+ N R + VR DR
Sbjct: 274 TQFNGYEWQGRNLEVREDR 292
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N ++V NL + + L E+F GKVE EI + +G+SRG G VEF+ +A SI+
Sbjct: 380 NTIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSIAK 439
Query: 220 L 220
Sbjct: 440 F 440
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
G V ++ G+P+GS IV F++P+ R A+ + + +E +GR L ++E
Sbjct: 240 GQVLRADVHTAPDGRPKGSGIVAFETPEDARNAITQFNGYEWQGRNLEVRE 290
>gi|195401044|ref|XP_002059124.1| GJ16219 [Drosophila virilis]
gi|194155998|gb|EDW71182.1| GJ16219 [Drosophila virilis]
Length = 249
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F NLD +V E+ L EVF AG +E+ I LD G+ R FG V + H ++ +
Sbjct: 76 LFCNNLDERVTEEILYEVFLQAGPIESARIPLDNTGRQRNFGFVTYQHKCAVPFAMELYQ 135
Query: 222 NQNLFERRITVRMDRVADRLDGP-VRLPEGLKSIGMGLGANGAPLQDVA 269
LF++++ +R + D+ P +R G + P+ D A
Sbjct: 136 GLELFQKKVLIR-QQCPDKPKVPFIRQERTRNPFSQGFASPAPPINDHA 183
>gi|17543644|ref|NP_500025.1| Protein Y55F3AM.3, isoform a [Caenorhabditis elegans]
gi|373220572|emb|CCD74059.1| Protein Y55F3AM.3, isoform a [Caenorhabditis elegans]
Length = 580
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S VG V V I+ D TG+ +G VEF + V G L
Sbjct: 190 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV-----------PLGLAL-------- 230
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G+R MG + R + + +S +T G + G P V V NL K
Sbjct: 231 -NGQRLMGAPLQIQRTCAERNRAANSSVASTLGFV-----APGNKGP--THVLVENLHPK 282
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+DEK +R++F G++E +++ +D + ++RGF T+ F + +A +S LNN L R I
Sbjct: 283 IDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCI 342
Query: 231 TV 232
+
Sbjct: 343 RL 344
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 40/193 (20%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
Q A L++ + + +V Y N DT + RG V + + KAV K + FE GR
Sbjct: 127 QALAMLFEQAGTVEISEVIY----NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGR 182
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
+L + N ++ G+ P+ ++
Sbjct: 183 RLTV----------------------------NRAAPRGSRPERQPRVYDAAF------- 207
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V NL + VD +L +F GKV + + D++ G+SRGFG V+ + E +I+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 220 LNNQNLFERRITV 232
L+ QNL R I V
Sbjct: 268 LDGQNLEGRAIKV 280
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y VD + L +F AG VE E+ ++D +SRGFG V EA +++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
N+ + RR+TV +R A R P R P
Sbjct: 174 FNSFEVNGRRLTV--NRAAPRGSRPERQP 200
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 130 LLQNNSSKFGNTYGLSPQFLESL-GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188
L Q S + + SP F +++ ++ K+F+ + Y DE+ LRE F G+V +
Sbjct: 11 LRQTASRQVSSELRSSPSFFQAIRSMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVD 70
Query: 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
I +D++ G+SRGFG + + EA +I L+ Q+L R I V
Sbjct: 71 ARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRPIRV 115
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
+ C +K+FV + ++ D+ L+E F G V I +D++ G+SRGFG V + E
Sbjct: 34 MRCMSSSKLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEE 93
Query: 213 AVQSISMLNNQNLFERRITV 232
A +I L+ Q+L RR+ V
Sbjct: 94 ASSAIQALDGQDLHGRRVRV 113
>gi|221057416|ref|XP_002261216.1| U1 small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|194247221|emb|CAQ40621.1| U1 small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 412
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ L Y V+EKKL++ F + GK++ V+I DK+ K +G+G +EF+H + ++ +
Sbjct: 100 IFIGRLSYDVNEKKLKKEFEVYGKIKKVKIIYDKNFKPKGYGFIEFEHTKSFNDAYNLAD 159
Query: 222 NQNLFERRITVRMDRV 237
+ + RRI V ++R
Sbjct: 160 GKKIDNRRILVDVERA 175
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ +++ D+ G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVVCDEHGS-RGFGFVHFETYEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ +A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRRERAAELGARALEFTNIY---------------------VKNLPADV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+++F GK+ +V++ D G+SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 ASRAQKRVER 272
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D +G+ R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ S++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLSRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 306 DDGKLRKEFSPYGVITSAKV-MTEGSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 52/221 (23%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGSILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++ D+ G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV-----RMDRVAD 239
V F+ A Q+I+ +N L +R++ V R +R A+
Sbjct: 142 FVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAE 182
>gi|395844114|ref|XP_003794810.1| PREDICTED: RNA-binding protein 7 [Otolemur garnettii]
Length = 264
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|291383856|ref|XP_002708466.1| PREDICTED: RNA binding motif protein 7 [Oryctolagus cuniculus]
Length = 266
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+K+F+ L + DE LR+ F G V V+I LD+D G+SRGFG V F P EA ++
Sbjct: 45 SKLFIGGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQ 104
Query: 219 MLNNQNLFERRITVRMDRVADR 240
++ + L R+I R+D D+
Sbjct: 105 EMDGRELAGRQI--RVDYATDK 124
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 52 LSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S+ G VT V+I+ D DTG+ RG V F SP+ A+ +M E GR++ + A +
Sbjct: 65 FSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVDYATDK 124
Query: 111 KGGRRNMGGGG 121
R GGGG
Sbjct: 125 A--RETRGGGG 133
>gi|25148310|ref|NP_741301.1| Protein Y55F3AM.3, isoform c [Caenorhabditis elegans]
gi|373220574|emb|CCD74061.1| Protein Y55F3AM.3, isoform c [Caenorhabditis elegans]
Length = 435
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S VG V V I+ D TG+ +G VEF + V G L
Sbjct: 45 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV-----------PLGLAL-------- 85
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G+R MG + R + + +S +T G + G P V V NL K
Sbjct: 86 -NGQRLMGAPLQIQRTCAERNRAANSSVASTLGFV-----APGNKGP--THVLVENLHPK 137
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+DEK +R++F G++E +++ +D + ++RGF T+ F + +A +S LNN L R I
Sbjct: 138 IDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCI 197
Query: 231 TV 232
+
Sbjct: 198 RL 199
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAV 214
N P N +++ NL Y+V ++L++VF G+V +V+I D G SRGFG VEF +A
Sbjct: 124 NTPPHNTLYIGNLYYEVTTEQLQKVFSRFGEVASVKIVYDNRGMSRGFGYVEFKSIDDAQ 183
Query: 215 QSISMLNNQNLFERRITVRMDRVADRLDGPVR--LPEGLKSIGMGLG 259
+I L+ Q R + V+ R D P R P L S + +G
Sbjct: 184 TAIDNLDMQVFEGRNLVVQYHRAKSDSDRPKREFPPANLPSKTLFIG 230
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 33/189 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G+V V+I+ D+ G RG VEF+S D + A++ + +GR LV++
Sbjct: 149 FSRFGEVASVKIVYDNRGMSRGFGYVEFKSIDDAQTAIDNLDMQVFEGRNLVVQ------ 202
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR P+ E N P +F+ N+ +++
Sbjct: 203 ----YHRAKSDSDR--------------------PK-REFPPANLP-SKTLFIGNMSFEM 236
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+K L ++FR V +V +A+D + G+ RGF +F A ++ +L+ + ++ R +
Sbjct: 237 SDKDLNDLFRDIRNVNDVRVAIDRRTGQPRGFAHADFLDVASATKAKEILSAKTIYGREL 296
Query: 231 TVRMDRVAD 239
V R A+
Sbjct: 297 RVDFSRSAN 305
>gi|356576454|ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max]
Length = 476
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
H GDV ++ + +TGKPRG V F P+++ + + H + GR + K+A
Sbjct: 25 HFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDKHVID--GRTVDAKKAFS 82
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ D+ +S + +S G + S K+FV L
Sbjct: 83 RE------------DQQISVTSRGGNSNSG---------MNSENGGNIRTKKIFVGGLPP 121
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ E+K R F G V +V + D++ G+ RGFG + FD EAV + + +L +
Sbjct: 122 TLTEEKFRLYFESYGHVTDVVVMYDQNTGRPRGFGFISFDT-EEAVDRVLHKSFHDLNGK 180
Query: 229 RITVR 233
++ V+
Sbjct: 181 QVEVK 185
>gi|319411674|emb|CBQ73718.1| related to polyadenylate-binding protein 3 [Sporisorium reilianum
SRZ2]
Length = 774
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD ++ K L + F+ G + + + D DGKSR FG V F +A Q++ ++
Sbjct: 307 LFIKNLDADIESKDLYDTFKAFGHIVSARVMRDNDGKSREFGFVSFKVAEDATQALHAMD 366
Query: 222 NQNLFERRITVRM 234
N L ++ITVR+
Sbjct: 367 NAKLGSKKITVRL 379
>gi|15231912|ref|NP_187457.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|6648212|gb|AAF21210.1|AC013483_34 putative RNA-binding protein [Arabidopsis thaliana]
gi|45752630|gb|AAS76213.1| At3g08000 [Arabidopsis thaliana]
gi|46359799|gb|AAS88763.1| At3g08000 [Arabidopsis thaliana]
gi|332641108|gb|AEE74629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 143
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 125 RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184
R +SA+ Q++ S +++ PQF S + +K+F+ L + VDE+ L++ F G
Sbjct: 11 RRVSAIPQHSIS---SSFHFLPQFCTSSSAS--PSSKLFIGGLSWSVDEQSLKDAFSSFG 65
Query: 185 KVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER--RITVRMDRVADRL 241
+V V IA DK G+SRGFG V+F +A+ + ++ + L R RI+ ++RV
Sbjct: 66 EVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVR--- 122
Query: 242 DGPVRLPEGLKS 253
GPV +P KS
Sbjct: 123 GGPVVVPRLGKS 134
>gi|380478106|emb|CCF43782.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 482
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 81 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 140
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 141 ERAMQTLNGRRVHQSEIRV 159
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 48/243 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 107 FETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLN-----GRRVHQSEI---- 157
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R N A N SSK + +FV +L +V
Sbjct: 158 --RVNW-----------AYQSNTSSKEDTSNHF----------------HIFVGDLSNEV 188
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+++ L + F G V + D K G+SRG+G V F +A +++S ++ + L R I
Sbjct: 189 NDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAI 248
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIGM----GLGANGAPLQDVANW---LLQEKVQKLSLI 283
R + + + + ++++G+ G + P VA++ L Q + +
Sbjct: 249 --RCNWANQKGQPSIAQQQAMQAMGLTPTTPFGHHQFPAHGVASYEVVLAQTPSWQTTCY 306
Query: 284 ISN 286
+ N
Sbjct: 307 VGN 309
>gi|326913169|ref|XP_003202913.1| PREDICTED: putative RNA-binding protein 11-like [Meleagris
gallopavo]
Length = 221
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ +V E+ L E+F AG + V I DK+GK + FG V F H +I++LN
Sbjct: 14 LFVGNLESRVREEILYELFLQAGPLTKVTICKDKEGKPKSFGFVCFKHKESVPYAIALLN 73
Query: 222 NQNLFERRITVR 233
L+ R I VR
Sbjct: 74 GIRLYGRPIKVR 85
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D++G+ R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ S++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRKFEQMKQDRLSRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + S+GFG V F P EA ++++ +N
Sbjct: 306 DDDKLRKEFSPYGVITSAKV-MTEGSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDKHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ +A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRRERAAELGARALEFTNIY---------------------VKNLPADV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+++F GK+ +V++ D G+SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 ASRAQKRVER 272
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGSILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++A DK G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV-----RMDRVAD 239
V F+ A Q+I+ +N L +R++ V R +R A+
Sbjct: 142 FVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAE 182
>gi|126326634|ref|XP_001371053.1| PREDICTED: RNA-binding protein 7-like isoform 1 [Monodelphis
domestica]
Length = 276
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD KV E+ L E+F AG V V+I DKDGK + F V F H +++LN
Sbjct: 12 LFVGNLDCKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEESVPYGMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|310798412|gb|EFQ33305.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 482
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 81 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 140
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 141 ERAMQTLNGRRVHQSEIRV 159
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 48/243 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 107 FETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLN-----GRRVHQSEI---- 157
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ Q+N+S +T S F +FV +L +V
Sbjct: 158 --------------RVNWAYQSNTSSKEDT---SNHF------------HIFVGDLSNEV 188
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+++ L + F G V + D K G+SRG+G V F +A +++S ++ + L R I
Sbjct: 189 NDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAI 248
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIGM----GLGANGAPLQDVANW---LLQEKVQKLSLI 283
R + + + + ++++G+ G + P VA++ L Q + +
Sbjct: 249 --RCNWANQKGQPSIAQQQAMQAMGLTPTTPFGHHQFPAHGVASYEVVLAQTPSWQTTCY 306
Query: 284 ISN 286
+ N
Sbjct: 307 VGN 309
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL DA + + G V + D+ G +G V +++ + RKAV++++ E
Sbjct: 234 VDLEVTDAEFEDL--VKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKE 291
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
G+KL A +R+ + + N +S G+N
Sbjct: 292 VNGKKLYAGRAQTKS------------EREAELKKSHEEKRLENE-------AKSAGVN- 331
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
++V NLD + D+ +LR F G + + ++ D G SRGFG V + P EA ++
Sbjct: 332 -----LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKA 386
Query: 217 ISMLNNQNLFERRITVRMDRVAD 239
+S +N + + + + V + + D
Sbjct: 387 VSEMNGKMIGTKPLYVALAQRKD 409
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ D++GKSRGF V + A +I +N
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 196 GMLLNDKKVYV 206
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 46/196 (23%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEF---QSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ GD+ ++ D+ GK RG A V + ++ D KAVN M
Sbjct: 154 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGM---------------- 197
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
LL + G+ G + + + N V++ N+D
Sbjct: 198 ---------------------LLNDKKVYVGHHVGKKERLSKVEELRAQFTN-VYIKNVD 235
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----Q 223
+V + + ++ + G +V ++ D+ G S+GFG V +++ A +++ LN +
Sbjct: 236 LEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGK 295
Query: 224 NLFERRITVRMDRVAD 239
L+ R + +R A+
Sbjct: 296 KLYAGRAQTKSEREAE 311
>gi|452986581|gb|EME86337.1| hypothetical protein MYCFIDRAFT_97432, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 540
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 31/182 (17%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
VGDV +I+ D +G+ +G VEF+ + V+KA+ + G+KL+
Sbjct: 178 FQQVGDVVDAQIVKDRVSGRSKGVGYVEFKEEESVQKAI------QLTGQKLL------- 224
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G + L+ +N ++ NT G + Q S GI P ++++V N+ +
Sbjct: 225 ---------GIPIIAQLTEAEKNRQAR--NTEGTATQ---SNGI--PF-HRLYVGNIHFS 267
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ E L+ VF G++E V++ ++ G+S+G+G V+F P +A +++ +N L R I
Sbjct: 268 ITEDDLKNVFEPFGELEFVQLQKEEAGRSKGYGFVQFIDPAQAKEALEKMNGFELAGRPI 327
Query: 231 TV 232
V
Sbjct: 328 RV 329
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
VFV L ++ ++L+E F+ G V + +I D+ G+S+G G VEF E+VQ L
Sbjct: 160 VFVQQLAARLRSRELKEFFQQVGDVVDAQIVKDRVSGRSKGVGYVEFKEE-ESVQKAIQL 218
Query: 221 NNQNLF 226
Q L
Sbjct: 219 TGQKLL 224
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 46/198 (23%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI------ 104
T G+V VE++ D TG+ RG V + + V A + + +E GR L +
Sbjct: 110 FETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPP 169
Query: 105 -KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
KE+ +G R GG D N+V+
Sbjct: 170 QKESSFSRGPR----GGETFDSG---------------------------------NRVY 192
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNN 222
V NL + VD L +FR G+V + ++ D+D G+SRGFG V + E +I LN
Sbjct: 193 VGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNG 252
Query: 223 QNLFERRITVRMDRVADR 240
L R I V + R
Sbjct: 253 AELDGRAIRVSVAEAKPR 270
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTV 205
K+FV NL + VD +L +F AG VE VE+ DK G+SRGFG V
Sbjct: 91 KLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFV 136
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+G A L++ + + + +V Y N DT + RG V + + KAV +R++ GR
Sbjct: 150 EGLARLFEQAGVVEIAEVIY----NRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGR 205
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + +A + G R + F +Y
Sbjct: 206 LLTVNKAA--RRGERP---------------ERPPRTFEQSY------------------ 230
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V N+ + +D+ +L ++F GKV + + D++ G+SRGFG V E +I+
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 220 LNNQNLFERRITVRMDRVADR 240
L+ Q+L R T+R++ DR
Sbjct: 291 LDGQSLDGR--TIRVNVAEDR 309
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y VD + L +F AG VE E+ ++D +SRGFG V EA +++ M
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
N ++ R +TV ++ A R + P R P +
Sbjct: 197 YNRYDVNGRLLTV--NKAARRGERPERPPRTFE 227
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + + K
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYVKNFTEDF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ +DGKS+GFG V F+ A ++ LN +++ E +
Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 254
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ + GK +G V F++ + AV ++ + +G+ L + A + K R
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA-QKKAER 265
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + R L Q G+N ++V NLD +D+
Sbjct: 266 QQ-----ELKRKFEELKQKRHESV-------------FGVN------LYVKNLDDTIDDD 301
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+LR F G + + ++ D++G+S+GFG V F+ EA +++ LN
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A SI
Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSID 148
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 149 KVNGMLLNGKKVYV 162
>gi|431908299|gb|ELK11897.1| RNA-binding protein 7 [Pteropus alecto]
Length = 264
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|342319977|gb|EGU11922.1| Telomere maintenance protein, putative [Rhodotorula glutinis ATCC
204091]
Length = 1050
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+FV NL + ++L+++ R AG V +IA DG+SRGFG+V F +A +++ M
Sbjct: 425 HLFVGNLPFNCQWQELKDLMRGAGNVLRADIAQGPDGRSRGFGSVLFASQGDAERAVGMF 484
Query: 221 NNQNLFERRITVRMDRVA 238
N R + V D+ A
Sbjct: 485 NGYEFNGRALKVHFDKFA 502
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
++FV+NL ++V + L+++ R G V ++AL+ DG+SRGFG V F +A ++I+
Sbjct: 61 QLFVSNLPFRVRWQDLKDLMRKCGTVLRADVALNPTDGRSRGFGVVLFAKAEDAAKAIAT 120
Query: 220 LNNQNLFERRITVRMD 235
+ R + VR+D
Sbjct: 121 YHGYTWQTRVLDVRID 136
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 24/122 (19%)
Query: 489 SIQSGGYGNPRAGLDSNRSMNQSSN-IERD------------------TVVVKNLPPTIT 529
SI GY P AGL SSN I R + V NLP
Sbjct: 377 SIHPMGYAVPAAGLLGYYPSPSSSNGIGRPGSAPPGAGPHGSGQYTNRHLFVGNLPFNCQ 436
Query: 530 WQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
WQEL+D R G++ A+I D G V F S+ A+RA+ M + +G+ + V
Sbjct: 437 WQELKDLMRGAGNVLRADIAQGPDGRSRGFGSVLFASQGDAERAVGMFNGYEFNGRALKV 496
Query: 585 TF 586
F
Sbjct: 497 HF 498
>gi|332019346|gb|EGI59852.1| Mitotic spindle assembly checkpoint protein MAD2A [Acromyrmex
echinatior]
Length = 211
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYD 303
L+ + WL+Q KV K++L+I+N NTKEVLE+WDFK+ Y+
Sbjct: 69 LRQIEEWLVQRKVHKITLVITNVNTKEVLEKWDFKVDYE 107
>gi|326509231|dbj|BAJ91532.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510271|dbj|BAJ87352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
I C +K+FV L Y DE LR+ F G++ + +I +D+D G+SRGFG + + +
Sbjct: 25 IRCMSSSKLFVGGLSYTTDEGSLRDAFSHYGEIIDAKIIVDRDTGRSRGFGFITYAAEEQ 84
Query: 213 AVQSISMLNNQNLFER--RITVRMDRVA 238
A +I L+ ++L R R++ +R +
Sbjct: 85 ASSAIMALDGKDLHGRNLRVSAATERTS 112
>gi|169767236|ref|XP_001818089.1| RNA-binding protein rsd1 [Aspergillus oryzae RIB40]
gi|238484073|ref|XP_002373275.1| RNA splicing factor (Pad-1), putative [Aspergillus flavus NRRL3357]
gi|83765944|dbj|BAE56087.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701325|gb|EED57663.1| RNA splicing factor (Pad-1), putative [Aspergillus flavus NRRL3357]
gi|391870727|gb|EIT79903.1| transcriptional coactivator CAPER [Aspergillus oryzae 3.042]
Length = 568
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 39/189 (20%)
Query: 49 ISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL----V 103
I+ VG V +I+ D +G+ +G VEF++ D V A+ + G+KL +
Sbjct: 195 IAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEDSVAPAI------QLTGQKLLGIPI 248
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
I + E + R+ +N + GN + P ++++
Sbjct: 249 IAQLTEAEKNRQ---------------ARNPDASSGNNHA------------APF-HRLY 280
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
V N+ + + E L+ VF G++E V++ D+ G+SRG+G V+F P +A +++ +N
Sbjct: 281 VGNIHFSITENDLQNVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGF 340
Query: 224 NLFERRITV 232
+L R I V
Sbjct: 341 DLAGRAIRV 349
>gi|194758661|ref|XP_001961580.1| GF14865 [Drosophila ananassae]
gi|190615277|gb|EDV30801.1| GF14865 [Drosophila ananassae]
Length = 241
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISML 220
+F NLD +V E+ L EVF AG +E V I +DK G+ R FG V + H ++ +
Sbjct: 67 LFCGNLDERVTEEILYEVFLQAGPIEQVRIPVDKMGGRHRNFGFVTYQHLCAVPFALELY 126
Query: 221 NNQNLFERRITVR 233
LFE+++T+R
Sbjct: 127 QGLELFEKKVTIR 139
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 40/190 (21%)
Query: 44 ASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
A L++ + + + +V Y N +T + RG V + + KAV+ HR+E GR L
Sbjct: 165 ARLFEQAGVVEIAEVIY----NRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLT 220
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+ N ++ G+ P+ E P +++
Sbjct: 221 V----------------------------NKAAPRGSQPERPPRVFE------PAF-RMY 245
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNN 222
V NL + VD +L +VF GKV + D++ G+SRGFG V E +I+ +
Sbjct: 246 VGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDG 305
Query: 223 QNLFERRITV 232
Q L R I V
Sbjct: 306 QTLDGRTIRV 315
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQ 215
P KVFV NL Y VD ++L +F AG VE E+ +++ +SRGFG V EA +
Sbjct: 145 PEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEK 204
Query: 216 SISMLNNQNLFERRITVRMDRVADRLDGPVRLP 248
++ M + L R +TV ++ A R P R P
Sbjct: 205 AVDMFHRYELDGRLLTV--NKAAPRGSQPERPP 235
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G+ + + D+ GK +G V + S + KAV++++ E G+KL A +
Sbjct: 241 VSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKR- 299
Query: 112 GGRRNMGGGGGVDRD--LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
V+RD L ++ +F +S G+N ++V NLD
Sbjct: 300 -----------VERDTELRKTIEEKRQEFD---------AKSAGVN------LYVKNLDD 333
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
+ D+ +LR F G + + ++ D+ G SR FG V + P EA +++S +N + + +
Sbjct: 334 EWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKP 393
Query: 230 ITVRM 234
+ V +
Sbjct: 394 LYVAL 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEF------DHPVEAVQ 215
+F+ NLD +D K L + F G++ + ++ +D+DGKSRGF V + D ++ V
Sbjct: 130 IFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVD 189
Query: 216 SISMLNNQNLF 226
+ MLN++ +F
Sbjct: 190 GM-MLNDKKVF 199
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 40/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D+ GK RG A V +Q+ + A+ + +K+ + +
Sbjct: 148 FAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHI--- 204
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G +R A + + F N VFV N+D V
Sbjct: 205 ---------GKKERQSKA--EEQRAHFTN---------------------VFVKNVDLSV 232
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
EK+ ++ G+ ++ ++LD++GKS+GFG V + A +++ LN+ Q L+
Sbjct: 233 TEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLW 292
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 293 AGRAQKRVER 302
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T +++ D G RG V F+ PD +A E G++LV + +
Sbjct: 203 FEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERAC-----IELNGKELVEGKPLYVG 257
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + R L +++ G+N ++V NLD +
Sbjct: 258 RAQKKAERQKELKRKFEQLKSERLTRYQ-------------GVN------LYVKNLDDTI 298
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+++LR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 299 DDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 347
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 37/204 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+TG +G V F++ + K++ K++ G+ + + + K
Sbjct: 110 FSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYVKNFGEDF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
++ L+++F G++ + ++ DG SRGFG V F+ P A ++ LN + L E +
Sbjct: 195 SDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 254
Query: 232 V--RMDRVADRLDGPVRLPEGLKS 253
R + A+R R E LKS
Sbjct: 255 YVGRAQKKAERQKELKRKFEQLKS 278
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 49/200 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++ ST G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 15 EAMLFE--KFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMNFDIIKGRP 72
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 73 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 91
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++A D+ G S+G+G V F+ A +SI
Sbjct: 92 VFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVN 151
Query: 219 --MLNNQNLFERRITVRMDR 236
+LN + ++ R R +R
Sbjct: 152 GMLLNGKMVYVGRFIPRKER 171
>gi|224131664|ref|XP_002321147.1| predicted protein [Populus trichocarpa]
gi|222861920|gb|EEE99462.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
NK+FVA L + VDEK L++ F G V V I D++ G+SRGFG V F EAV +
Sbjct: 18 NKLFVAGLSWSVDEKSLKDAFSSFGDVTEVNILYDRNSGRSRGFGFVSFCKEDEAVSAKD 77
Query: 219 MLNNQNLFER--RITVRMDRVADRLDGPVRLP 248
++ + L R RI+ ++RV GPV +P
Sbjct: 78 AMDGKALLGRPLRISYALERVR---GGPVVVP 106
>gi|169634460|ref|YP_001708196.1| RNA-binding protein [Acinetobacter baumannii SDF]
gi|169153252|emb|CAP02353.1| putative RNA-binding protein [Acinetobacter baumannii]
Length = 79
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 2 KILVRNLDRSVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPHEAIKAIKG 61
Query: 220 LN 221
LN
Sbjct: 62 LN 63
>gi|157131009|ref|XP_001655775.1| hypothetical protein AaeL_AAEL011963 [Aedes aegypti]
gi|108871684|gb|EAT35909.1| AAEL011963-PA [Aedes aegypti]
Length = 891
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 61 VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
+E+++ +GK RG EF+S V+KA++ R GR + I DK R+N
Sbjct: 668 IELVHGSSGKSRGFGYAEFESEQDVQKALS-FDRRPLDGRPVFISSLARDKSSRQN---- 722
Query: 121 GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVF 180
KF + P NK+FV L ++ +R++F
Sbjct: 723 ----------------KFKYSEKFEP-------------NKLFVKGLPFEATNDDVRKLF 753
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
GK+++V + + GKS+G VE++ V A ++ L+ N+ ITV
Sbjct: 754 EPYGKLKDVRVVYYRSGKSKGLAYVEYESEVAAKNAVLHLDQHNMNGFTITV 805
>gi|395520256|ref|XP_003764251.1| PREDICTED: RNA-binding protein 7 isoform 1 [Sarcophilus harrisii]
Length = 276
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD KV E+ L E+F AG V V+I DKDGK + F V F H +++LN
Sbjct: 12 LFVGNLDIKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEESVPYGMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 82 APEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGSA 141
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 142 ERAMQTLNGRRVHQAEIRV 160
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F EA +++S
Sbjct: 179 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSS 238
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 239 MDGEWLGSRAI 249
>gi|301782499|ref|XP_002926663.1| PREDICTED: RNA-binding protein 7-like [Ailuropoda melanoleuca]
gi|281353931|gb|EFB29515.1| hypothetical protein PANDA_016352 [Ailuropoda melanoleuca]
Length = 263
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF + I ++
Sbjct: 72 GIKLFGKPIKIQF 84
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 85/163 (52%), Gaps = 26/163 (15%)
Query: 61 VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGG 120
V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A ++ +
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------QKKVERQ 273
Query: 121 GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVF 180
+ R + Q+ +++ G+N ++V NLD +D+++LR+ F
Sbjct: 274 TELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDERLRKEF 314
Query: 181 RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
G + + ++ ++ G+S+GFG V F P EA ++++ +N +
Sbjct: 315 SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMN------------------ 159
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+L N+ F + + LG V++ N +
Sbjct: 160 -----------------GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ +F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 156
Query: 219 -----MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKEREAE 182
>gi|406952399|gb|EKD82023.1| hypothetical protein ACD_39C01519G0004 [uncultured bacterium]
Length = 83
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSIS 218
+K+FV NL + VD +KL E F G+V + ++ +D++ G+SRG+G VEF P A ++
Sbjct: 3 SKIFVGNLPFSVDNRKLEEEFAKFGQVVSAKVIMDRNSGRSRGYGFVEFTDPGSAQAAVD 62
Query: 219 MLNNQNLFERRITVRMDR 236
+N+Q + R++TV + +
Sbjct: 63 GMNDQPIEGRKLTVSLAK 80
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 80 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 139
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 140 ERAMQTLNGRRVHQSEIRV 158
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 94/243 (38%), Gaps = 48/243 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 106 FETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLN-----GRRVHQSEI---- 156
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R N A N SSK + +FV +L +V
Sbjct: 157 --RVNW-----------AYQSNTSSKEDTSNHF----------------HIFVGDLSNEV 187
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+++ L + F G V + D K G+SRG+G V F +A +++S ++ + L R I
Sbjct: 188 NDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAI 247
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIGM----GLGANGAPLQDVANW---LLQEKVQKLSLI 283
R + + + + ++++G+ G + P VA++ L Q + +
Sbjct: 248 --RCNWANQKGQPSIAQQQAMQAMGLTPTTPFGHHQFPAHGVASYEVVLAQTPSWQTTCY 305
Query: 284 ISN 286
+ N
Sbjct: 306 VGN 308
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 83 APEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPAAA 142
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 143 ERAMQTLNGRRVHQAEIRV 161
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F +A +++S
Sbjct: 180 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSS 239
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
++ + L R I R + + + + + ++GM
Sbjct: 240 MDGEWLGSRAI--RCNWANQKGQPSISQQQAMSAMGM 274
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
+ C +K+F+ + ++ D+ L+E F G V I +D+D G+SRGFG V + E
Sbjct: 34 LRCMSSSKIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEE 93
Query: 213 AVQSISMLNNQNLFERRITV 232
A +I ++ Q+L RR+ V
Sbjct: 94 ASSAIQAMDGQDLHGRRVRV 113
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 39/203 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + +
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFI--- 166
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
P+ + LG L V+V N
Sbjct: 167 ----------------------------------PRKEQELGEKAKLFTNVYVKNFTEDF 192
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ +DGKS+GFG V F+ A ++ LN +++ E +
Sbjct: 193 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 252
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 253 YVARAQKKAERQQELKRKFEELK 275
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ + GK +G V F++ + AV ++ + +G+ L + A + K R
Sbjct: 205 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA-QKKAER 263
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + R L Q G+N ++V NLD +D+
Sbjct: 264 QQ-----ELKRKFEELKQKRHESV-------------FGVN------LYVKNLDDTIDDD 299
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
+LR F G + + ++ D++G+S+GFG V F+ EA +++ LN + + + + V +
Sbjct: 300 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVAL 359
Query: 235 -----DRVADRLDGPVRLPEGLKSIGMG 257
+R AD +R G++ +G
Sbjct: 360 AQRKEERKADLASQYMRHMTGMRMQQLG 387
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A SI
Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSID 148
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 149 KVNGMLLNGKKVYV 162
>gi|395520258|ref|XP_003764252.1| PREDICTED: RNA-binding protein 7 isoform 2 [Sarcophilus harrisii]
Length = 270
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NLD KV E+ L E+F AG V V+I DKDGK + F V F H +++LN
Sbjct: 12 LFVGNLDIKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEESVPYGMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|358383610|gb|EHK21274.1| hypothetical protein TRIVIDRAFT_116557, partial [Trichoderma virens
Gv29-8]
Length = 466
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 71 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 130
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 131 ERAMQTLNGRRVHQSEIRV 149
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +++++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGINDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|426370523|ref|XP_004052212.1| PREDICTED: RNA-binding protein 7 isoform 1 [Gorilla gorilla
gorilla]
Length = 149
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>gi|156058654|ref|XP_001595250.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980]
gi|154701126|gb|EDO00865.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E+ LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 83 APEPNKRALYVGGLDPRVTEEVLRQIFETTGHVQNVKIIPDKNSKGFNYGFVEYDDPGAA 142
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 143 ERAMQTLNGRRVHQAEIRV 161
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 52 LSTVGDVTYVEILNDDT-GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
+ G V VE++ D T G+ RG V + V A + + +E GR L
Sbjct: 113 FESAGQVERVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLL-------- 164
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R N G D S N+S+F N N+V V+NL +
Sbjct: 165 ---RVNYGPPPPKRDDSSFRGSRNASRFDNR------------------NRVHVSNLAWG 203
Query: 171 VDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
VD+ L +FR G V ++ D+D GKSRGFG V ++ E ++I L+ +L R
Sbjct: 204 VDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNEAIQSLDGVDLDGRP 263
Query: 230 ITV 232
I V
Sbjct: 264 IRV 266
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTV 205
K+FV NL + VD +L +F AG+VE VE+ DK G+SRGFG V
Sbjct: 94 KLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSRGFGFV 139
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D++G R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLRRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARALEFTNIY---------------------VKNLPVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+++F GK+ +V++ D G SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 AGRAQKRVER 272
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 47/209 (22%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 142 FVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>gi|408390063|gb|EKJ69476.1| hypothetical protein FPSE_10356 [Fusarium pseudograminearum CS3096]
Length = 564
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 179 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQAAVAQL 238
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 239 SNQNLMGRLVYVREDREAE 257
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 9/190 (4%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV ++ GR + ++ ED+
Sbjct: 198 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQAAVAQLSNQNLMGRLVYVR---EDR 254
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G G +R F YG G +++VANL + V
Sbjct: 255 EAEPRFIGATGGNRGGFGGGGGMPGHFNPAYGGG---APGGGAPGGGGRQIYVANLPFNV 311
Query: 172 DEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ L+++FR A G V ++ + DG+ +G G V F+ P +A +I N + R
Sbjct: 312 GWQDLKDLFRQAARTGAVIRADVHIGPDGRPKGSGIVVFESPDDARNAIGQFNGYDWQGR 371
Query: 229 RITVRMDRVA 238
I VR DR A
Sbjct: 372 VIEVREDRYA 381
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + L E+F GKVE EI + G+SRG G V FD A +I+
Sbjct: 466 IYVRNLPWSTSNDDLVELFTTIGKVEQAEIQYEPSGRSRGTGVVRFDSAETAETAITKF 524
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ALD G+S+G+G V+FD+ A+++I LN
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLN 178
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 179 GMLLNDKQVYV 189
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 37/172 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D +G+ +G V+F + + KA+ K++ +++ + +
Sbjct: 137 FSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFL--- 193
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R G VD+ SKF N VFV NL
Sbjct: 194 ---RKQERDGVVDK----------SKF---------------------NNVFVKNLSETT 219
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
E+ L + F G + ++ + D DGKSR FG V F++ +A +++ LN +
Sbjct: 220 TEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGK 271
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + ++ D GK R V F++ D +AV+ ++ G+ + KE K
Sbjct: 228 FSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLN-----GKLVDDKEWYVGK 282
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+++ + +L + + + Y G N +++ NLD +
Sbjct: 283 AQKKSER-----EVELKHRFEQTMKEAADKYQ---------GAN------LYIKNLDDSI 322
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ D +G SRG G V F P EA +++ +N + + + +
Sbjct: 323 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 382
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 383 VALAQRKEDR 392
>gi|445400075|ref|ZP_21429725.1| hypothetical protein ACINNAV57_0470 [Acinetobacter baumannii
Naval-57]
gi|444783457|gb|ELX07316.1| hypothetical protein ACINNAV57_0470 [Acinetobacter baumannii
Naval-57]
Length = 79
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 2 KILVRNLDRSVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPREAIKAIKG 61
Query: 220 LN 221
LN
Sbjct: 62 LN 63
>gi|388854443|emb|CCF52027.1| related to polyadenylate-binding protein 3 [Ustilago hordei]
Length = 798
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +++ L + F+ G + + + D DGKSR FG V F P EA Q+++ ++
Sbjct: 328 LFIKNLDSEIESNGLFDTFKAFGHIVSARVMRDNDGKSREFGFVSFTTPEEARQALTAMD 387
Query: 222 NQNLFERRITVRM 234
L ++ITVR+
Sbjct: 388 GAKLGSKKITVRL 400
>gi|363728611|ref|XP_416676.3| PREDICTED: putative RNA-binding protein 11 [Gallus gallus]
Length = 256
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ +V E+ L E+F AG + V I DK+GK + FG V F H +I++LN
Sbjct: 14 LFVGNLESRVREEILYELFLQAGPLTKVTICKDKEGKPKSFGFVCFKHKESVPYAIALLN 73
Query: 222 NQNLFERRITVR 233
L+ R I VR
Sbjct: 74 GIRLYGRPIKVR 85
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + + K
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N +
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYVKNFTEEF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ +DGKS+GFG V ++ A ++ LN +++ E +
Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSL 254
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ + GK +G V +++ + AV ++ + +G+ L + A + K R
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARA-QKKAER 265
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLES-LGINCPLINKVFVANLDYKVDE 173
+ Q KF L + ES G+N ++V NLD +D+
Sbjct: 266 Q----------------QELKRKFEE---LKKKRHESVFGVN------LYVKNLDDSIDD 300
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++LR+ F L G + + ++ D +G+S+GFG V F P EA +++ LN
Sbjct: 301 ERLRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELN 348
>gi|126640516|ref|YP_001083500.1| RNA-binding protein [Acinetobacter baumannii ATCC 17978]
gi|184156772|ref|YP_001845111.1| RNA-binding protein [Acinetobacter baumannii ACICU]
gi|260556194|ref|ZP_05828413.1| RNA-binding protein [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|332852995|ref|ZP_08434505.1| hypothetical protein HMPREF0021_02087 [Acinetobacter baumannii
6013150]
gi|332866445|ref|ZP_08437014.1| hypothetical protein HMPREF0020_00620 [Acinetobacter baumannii
6013113]
gi|332873184|ref|ZP_08441141.1| hypothetical protein HMPREF0022_00746 [Acinetobacter baumannii
6014059]
gi|384130444|ref|YP_005513056.1| RNA-binding protein [Acinetobacter baumannii 1656-2]
gi|384141729|ref|YP_005524439.1| putative RNA-binding protein [Acinetobacter baumannii MDR-ZJ06]
gi|385236042|ref|YP_005797381.1| RNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
gi|416150846|ref|ZP_11603493.1| RNA-binding protein [Acinetobacter baumannii AB210]
gi|417575282|ref|ZP_12226135.1| hypothetical protein ACINBC5_A0717 [Acinetobacter baumannii Canada
BC-5]
gi|421651040|ref|ZP_16091412.1| hypothetical protein ACIN5162_0430 [Acinetobacter baumannii
OIFC0162]
gi|445446735|ref|ZP_21443366.1| hypothetical protein ACINWCA92_0516 [Acinetobacter baumannii
WC-A-92]
gi|183208366|gb|ACC55764.1| RNA-binding protein (RRM domain) [Acinetobacter baumannii ACICU]
gi|260410249|gb|EEX03548.1| RNA-binding protein [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506664|gb|ADX02118.1| RNA-binding protein [Acinetobacter baumannii 1656-2]
gi|323516539|gb|ADX90920.1| RNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
gi|332728931|gb|EGJ60286.1| hypothetical protein HMPREF0021_02087 [Acinetobacter baumannii
6013150]
gi|332734602|gb|EGJ65709.1| hypothetical protein HMPREF0020_00620 [Acinetobacter baumannii
6013113]
gi|332738696|gb|EGJ69566.1| hypothetical protein HMPREF0022_00746 [Acinetobacter baumannii
6014059]
gi|333363821|gb|EGK45835.1| RNA-binding protein [Acinetobacter baumannii AB210]
gi|347592222|gb|AEP04943.1| putative RNA-binding protein [Acinetobacter baumannii MDR-ZJ06]
gi|400206015|gb|EJO36995.1| hypothetical protein ACINBC5_A0717 [Acinetobacter baumannii Canada
BC-5]
gi|408509052|gb|EKK10728.1| hypothetical protein ACIN5162_0430 [Acinetobacter baumannii
OIFC0162]
gi|444759677|gb|ELW84139.1| hypothetical protein ACINWCA92_0516 [Acinetobacter baumannii
WC-A-92]
Length = 86
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 9 KILVRNLDRSVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPREAIKAIKG 68
Query: 220 LN 221
LN
Sbjct: 69 LN 70
>gi|367010890|ref|XP_003679946.1| hypothetical protein TDEL_0B06060 [Torulaspora delbrueckii]
gi|359747604|emb|CCE90735.1| hypothetical protein TDEL_0B06060 [Torulaspora delbrueckii]
Length = 345
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H S VG+V +I+ G RG VEF + D V +A+ + R++ +++
Sbjct: 65 HFSEVGEVVRADIITS-RGHHRGMGTVEFTNSDDVDEAIRRYDSSYFMDRQVFVRQDNPP 123
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
R +R + A Q ++ P + +VFVANL Y
Sbjct: 124 PESARERPPREARER-VKARDQYPQHQY-------PAY------------EVFVANLPYS 163
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
++ + L+++F+ G V ++ LD++G SRGFGT F E +I N L R +
Sbjct: 164 INWQALKDMFKEVGNVIRADVELDRNGYSRGFGTAIFGTSEEMQAAIERYNGYELEGRVL 223
Query: 231 TVRMDRVA 238
VR R A
Sbjct: 224 DVREGRNA 231
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
+N N +F+ NL Y + L++ F G+V +I + G RG GTVEF + +
Sbjct: 40 VNRNYANSIFIGNLTYDCTPEDLKDHFSEVGEVVRADIITSR-GHHRGMGTVEFTNSDDV 98
Query: 214 VQSISMLNNQNLFERRITVRMD 235
++I ++ +R++ VR D
Sbjct: 99 DEAIRRYDSSYFMDRQVFVRQD 120
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
VG+V ++ D G RG F + + ++ A+ + + +E +GR L ++E
Sbjct: 173 FKEVGNVIRADVELDRNGYSRGFGTAIFGTSEEMQAAIERYNGYELEGRVLDVREG---- 228
Query: 112 GGRRNMGG--GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
RN G V ++A + +F E + N ++ NL
Sbjct: 229 ---RNAPGPETAPVAPPVAAEAEVPQKS---------EFTEGVLGGGERNNLIYCTNLPL 276
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
L ++F GKV N E+ D DG+ G VE+ + +A + LNN N
Sbjct: 277 STATSDLYDLFETIGKVNNAELKYDADGQPLGIAVVEYANIEDADVCMERLNNYNY 332
>gi|169797306|ref|YP_001715099.1| RNA-binding protein [Acinetobacter baumannii AYE]
gi|213155884|ref|YP_002317929.1| hypothetical protein AB57_0525 [Acinetobacter baumannii AB0057]
gi|215484743|ref|YP_002326978.1| RNA recognition motif protein [Acinetobacter baumannii AB307-0294]
gi|239500825|ref|ZP_04660135.1| RNA-binding protein [Acinetobacter baumannii AB900]
gi|301346573|ref|ZP_07227314.1| RNA-binding protein [Acinetobacter baumannii AB056]
gi|301511052|ref|ZP_07236289.1| RNA-binding protein [Acinetobacter baumannii AB058]
gi|301594475|ref|ZP_07239483.1| RNA-binding protein [Acinetobacter baumannii AB059]
gi|387125313|ref|YP_006291195.1| RRM domain-containing RNA-binding protein [Acinetobacter baumannii
MDR-TJ]
gi|403673813|ref|ZP_10936097.1| RNA-binding protein [Acinetobacter sp. NCTC 10304]
gi|407931377|ref|YP_006847020.1| RNA-binding protein [Acinetobacter baumannii TYTH-1]
gi|417546788|ref|ZP_12197874.1| hypothetical protein ACIN5032_0361 [Acinetobacter baumannii
OIFC032]
gi|417548224|ref|ZP_12199305.1| hypothetical protein ACINNAV18_0636 [Acinetobacter baumannii
Naval-18]
gi|417554066|ref|ZP_12205135.1| hypothetical protein ACINNAV81_3287 [Acinetobacter baumannii
Naval-81]
gi|417559917|ref|ZP_12210796.1| hypothetical protein ACIN3137_A3224 [Acinetobacter baumannii
OIFC137]
gi|417566986|ref|ZP_12217858.1| hypothetical protein ACIN5143_A1114 [Acinetobacter baumannii
OIFC143]
gi|417571555|ref|ZP_12222412.1| hypothetical protein ACIN5189_A3243 [Acinetobacter baumannii
OIFC189]
gi|417576442|ref|ZP_12227287.1| hypothetical protein ACINNAV7_A2323 [Acinetobacter baumannii
Naval-17]
gi|417871084|ref|ZP_12516028.1| RNA-binding protein [Acinetobacter baumannii ABNIH1]
gi|417875746|ref|ZP_12520551.1| RNA-binding protein [Acinetobacter baumannii ABNIH2]
gi|417879756|ref|ZP_12524311.1| RNA-binding protein [Acinetobacter baumannii ABNIH3]
gi|417882082|ref|ZP_12526390.1| RNA-binding protein [Acinetobacter baumannii ABNIH4]
gi|421201127|ref|ZP_15658286.1| hypothetical protein ACIN5109_1719 [Acinetobacter baumannii
OIFC109]
gi|421202595|ref|ZP_15659743.1| RNA-binding protein [Acinetobacter baumannii AC12]
gi|421454332|ref|ZP_15903681.1| hypothetical protein ACINIS123_0639 [Acinetobacter baumannii
IS-123]
gi|421533701|ref|ZP_15979982.1| RNA binding protein [Acinetobacter baumannii AC30]
gi|421622303|ref|ZP_16063208.1| hypothetical protein ACIN5074_3441 [Acinetobacter baumannii
OIFC074]
gi|421625701|ref|ZP_16066547.1| hypothetical protein ACIN5098_0550 [Acinetobacter baumannii
OIFC098]
gi|421630775|ref|ZP_16071476.1| hypothetical protein ACIN5180_0540 [Acinetobacter baumannii
OIFC180]
gi|421634256|ref|ZP_16074875.1| hypothetical protein ACINNAV13_0626 [Acinetobacter baumannii
Naval-13]
gi|421655049|ref|ZP_16095373.1| hypothetical protein ACINNAV72_0512 [Acinetobacter baumannii
Naval-72]
gi|421659386|ref|ZP_16099607.1| hypothetical protein ACINNAV83_0530 [Acinetobacter baumannii
Naval-83]
gi|421662077|ref|ZP_16102245.1| hypothetical protein ACIN5110_3351 [Acinetobacter baumannii
OIFC110]
gi|421666185|ref|ZP_16106277.1| hypothetical protein ACIN5087_0480 [Acinetobacter baumannii
OIFC087]
gi|421671099|ref|ZP_16111081.1| hypothetical protein ACIN5099_0494 [Acinetobacter baumannii
OIFC099]
gi|421675913|ref|ZP_16115832.1| hypothetical protein ACIN5065_3263 [Acinetobacter baumannii
OIFC065]
gi|421677420|ref|ZP_16117312.1| hypothetical protein ACIN5111_0475 [Acinetobacter baumannii
OIFC111]
gi|421688341|ref|ZP_16128041.1| hypothetical protein ACINIS143_0504 [Acinetobacter baumannii
IS-143]
gi|421692652|ref|ZP_16132303.1| hypothetical protein ACINIS116_0498 [Acinetobacter baumannii
IS-116]
gi|421693884|ref|ZP_16133516.1| hypothetical protein ACINWC692_0498 [Acinetobacter baumannii
WC-692]
gi|421702176|ref|ZP_16141661.1| RNA-binding protein [Acinetobacter baumannii ZWS1122]
gi|421705915|ref|ZP_16145336.1| RNA-binding protein [Acinetobacter baumannii ZWS1219]
gi|421789220|ref|ZP_16225482.1| hypothetical protein ACINNAV82_0431 [Acinetobacter baumannii
Naval-82]
gi|421792191|ref|ZP_16228346.1| hypothetical protein ACINNAV2_0480 [Acinetobacter baumannii
Naval-2]
gi|421796983|ref|ZP_16233033.1| hypothetical protein ACINNAV21_3351 [Acinetobacter baumannii
Naval-21]
gi|421800668|ref|ZP_16236640.1| hypothetical protein ACINCANBC1_0545 [Acinetobacter baumannii
Canada BC1]
gi|421805741|ref|ZP_16241617.1| hypothetical protein ACINWCA694_0502 [Acinetobacter baumannii
WC-A-694]
gi|421808113|ref|ZP_16243970.1| hypothetical protein ACIN5035_0465 [Acinetobacter baumannii
OIFC035]
gi|424053800|ref|ZP_17791331.1| hypothetical protein W9G_02992 [Acinetobacter baumannii Ab11111]
gi|424057056|ref|ZP_17794573.1| hypothetical protein W9I_00382 [Acinetobacter nosocomialis Ab22222]
gi|424061244|ref|ZP_17798734.1| hypothetical protein W9K_02357 [Acinetobacter baumannii Ab33333]
gi|424064735|ref|ZP_17802219.1| hypothetical protein W9M_02724 [Acinetobacter baumannii Ab44444]
gi|425749310|ref|ZP_18867290.1| hypothetical protein ACINWC348_0533 [Acinetobacter baumannii
WC-348]
gi|425751492|ref|ZP_18869437.1| hypothetical protein ACINNAV113_0529 [Acinetobacter baumannii
Naval-113]
gi|445458250|ref|ZP_21447074.1| hypothetical protein ACIN5047_0474 [Acinetobacter baumannii
OIFC047]
gi|445465099|ref|ZP_21449877.1| hypothetical protein ACIN7338_0536 [Acinetobacter baumannii
OIFC338]
gi|445481439|ref|ZP_21455883.1| hypothetical protein ACINNAV78_0495 [Acinetobacter baumannii
Naval-78]
gi|445486354|ref|ZP_21457412.1| hypothetical protein ACINAA014_0483 [Acinetobacter baumannii
AA-014]
gi|169150233|emb|CAM88129.1| putative RNA-binding protein [Acinetobacter baumannii AYE]
gi|193076261|gb|ABO10898.2| putative RNA-binding protein [Acinetobacter baumannii ATCC 17978]
gi|213055044|gb|ACJ39946.1| hypothetical protein AB57_0525 [Acinetobacter baumannii AB0057]
gi|213985959|gb|ACJ56258.1| RNA recognition motif protein [Acinetobacter baumannii AB307-0294]
gi|342225099|gb|EGT90109.1| RNA-binding protein [Acinetobacter baumannii ABNIH2]
gi|342226400|gb|EGT91373.1| RNA-binding protein [Acinetobacter baumannii ABNIH1]
gi|342227537|gb|EGT92460.1| RNA-binding protein [Acinetobacter baumannii ABNIH3]
gi|342238331|gb|EGU02764.1| RNA-binding protein [Acinetobacter baumannii ABNIH4]
gi|385879805|gb|AFI96900.1| RRM domain-containing RNA-binding protein [Acinetobacter baumannii
MDR-TJ]
gi|395522499|gb|EJG10588.1| hypothetical protein ACIN3137_A3224 [Acinetobacter baumannii
OIFC137]
gi|395552003|gb|EJG18012.1| hypothetical protein ACIN5189_A3243 [Acinetobacter baumannii
OIFC189]
gi|395552658|gb|EJG18666.1| hypothetical protein ACIN5143_A1114 [Acinetobacter baumannii
OIFC143]
gi|395563159|gb|EJG24812.1| hypothetical protein ACIN5109_1719 [Acinetobacter baumannii
OIFC109]
gi|395569663|gb|EJG30325.1| hypothetical protein ACINNAV7_A2323 [Acinetobacter baumannii
Naval-17]
gi|398327978|gb|EJN44108.1| RNA-binding protein [Acinetobacter baumannii AC12]
gi|400213099|gb|EJO44056.1| hypothetical protein ACINIS123_0639 [Acinetobacter baumannii
IS-123]
gi|400384676|gb|EJP43354.1| hypothetical protein ACIN5032_0361 [Acinetobacter baumannii
OIFC032]
gi|400388523|gb|EJP51595.1| hypothetical protein ACINNAV18_0636 [Acinetobacter baumannii
Naval-18]
gi|400390483|gb|EJP57530.1| hypothetical protein ACINNAV81_3287 [Acinetobacter baumannii
Naval-81]
gi|404559938|gb|EKA65189.1| hypothetical protein ACINIS116_0498 [Acinetobacter baumannii
IS-116]
gi|404561084|gb|EKA66320.1| hypothetical protein ACINIS143_0504 [Acinetobacter baumannii
IS-143]
gi|404569723|gb|EKA74808.1| hypothetical protein ACINWC692_0498 [Acinetobacter baumannii
WC-692]
gi|404666926|gb|EKB34856.1| hypothetical protein W9K_02357 [Acinetobacter baumannii Ab33333]
gi|404667286|gb|EKB35207.1| hypothetical protein W9G_02992 [Acinetobacter baumannii Ab11111]
gi|404672818|gb|EKB40622.1| hypothetical protein W9M_02724 [Acinetobacter baumannii Ab44444]
gi|407194939|gb|EKE66075.1| RNA-binding protein [Acinetobacter baumannii ZWS1122]
gi|407195328|gb|EKE66462.1| RNA-binding protein [Acinetobacter baumannii ZWS1219]
gi|407440589|gb|EKF47106.1| hypothetical protein W9I_00382 [Acinetobacter nosocomialis Ab22222]
gi|407899958|gb|AFU36789.1| RNA-binding protein [Acinetobacter baumannii TYTH-1]
gi|408509186|gb|EKK10861.1| hypothetical protein ACINNAV72_0512 [Acinetobacter baumannii
Naval-72]
gi|408696205|gb|EKL41753.1| hypothetical protein ACIN5074_3441 [Acinetobacter baumannii
OIFC074]
gi|408697161|gb|EKL42681.1| hypothetical protein ACIN5180_0540 [Acinetobacter baumannii
OIFC180]
gi|408697795|gb|EKL43301.1| hypothetical protein ACIN5098_0550 [Acinetobacter baumannii
OIFC098]
gi|408704974|gb|EKL50330.1| hypothetical protein ACINNAV13_0626 [Acinetobacter baumannii
Naval-13]
gi|408708097|gb|EKL53375.1| hypothetical protein ACINNAV83_0530 [Acinetobacter baumannii
Naval-83]
gi|408714880|gb|EKL60010.1| hypothetical protein ACIN5110_3351 [Acinetobacter baumannii
OIFC110]
gi|409988373|gb|EKO44545.1| RNA binding protein [Acinetobacter baumannii AC30]
gi|410381430|gb|EKP33996.1| hypothetical protein ACIN5065_3263 [Acinetobacter baumannii
OIFC065]
gi|410383396|gb|EKP35929.1| hypothetical protein ACIN5099_0494 [Acinetobacter baumannii
OIFC099]
gi|410388110|gb|EKP40549.1| hypothetical protein ACIN5087_0480 [Acinetobacter baumannii
OIFC087]
gi|410393176|gb|EKP45530.1| hypothetical protein ACIN5111_0475 [Acinetobacter baumannii
OIFC111]
gi|410397782|gb|EKP50022.1| hypothetical protein ACINNAV21_3351 [Acinetobacter baumannii
Naval-21]
gi|410399150|gb|EKP51347.1| hypothetical protein ACINNAV82_0431 [Acinetobacter baumannii
Naval-82]
gi|410400498|gb|EKP52666.1| hypothetical protein ACINNAV2_0480 [Acinetobacter baumannii
Naval-2]
gi|410406919|gb|EKP58915.1| hypothetical protein ACINCANBC1_0545 [Acinetobacter baumannii
Canada BC1]
gi|410408003|gb|EKP59978.1| hypothetical protein ACINWCA694_0502 [Acinetobacter baumannii
WC-A-694]
gi|410416292|gb|EKP68067.1| hypothetical protein ACIN5035_0465 [Acinetobacter baumannii
OIFC035]
gi|425489383|gb|EKU55695.1| hypothetical protein ACINWC348_0533 [Acinetobacter baumannii
WC-348]
gi|425499939|gb|EKU65967.1| hypothetical protein ACINNAV113_0529 [Acinetobacter baumannii
Naval-113]
gi|444769839|gb|ELW94007.1| hypothetical protein ACINAA014_0483 [Acinetobacter baumannii
AA-014]
gi|444770231|gb|ELW94388.1| hypothetical protein ACINNAV78_0495 [Acinetobacter baumannii
Naval-78]
gi|444775894|gb|ELW99950.1| hypothetical protein ACIN5047_0474 [Acinetobacter baumannii
OIFC047]
gi|444779231|gb|ELX03225.1| hypothetical protein ACIN7338_0536 [Acinetobacter baumannii
OIFC338]
gi|452955715|gb|EME61112.1| RNA-binding protein [Acinetobacter baumannii MSP4-16]
Length = 79
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 2 KILVRNLDRSVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPREAIKAIKG 61
Query: 220 LN 221
LN
Sbjct: 62 LN 63
>gi|358397912|gb|EHK47280.1| hypothetical protein TRIATDRAFT_165657, partial [Trichoderma
atroviride IMI 206040]
Length = 465
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 70 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 129
Query: 214 VQSISMLNNQNLFERRITV 232
++++ LN + + + I V
Sbjct: 130 DRAMATLNGRRVHQSEIRV 148
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V++ L + F G V + D K G+SRG+G V F +A +++S
Sbjct: 167 HIFVGDLSNEVNDDILHQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 226
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 227 MDGEWLGSRAI 237
>gi|396471623|ref|XP_003838913.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
gi|312215482|emb|CBX95434.1| hypothetical protein LEMA_P025860.1 [Leptosphaeria maculans JN3]
Length = 164
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
++K+F+ L + D++ LR+ F G+VE + D+D G+SRGFG V + + EA ++
Sbjct: 1 MSKLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYANDAEADAAM 60
Query: 218 SMLNNQNLFERRITVRMDRVADR 240
LNN+ RRI R+D+ +DR
Sbjct: 61 QALNNEEFDGRRI--RVDKASDR 81
>gi|340522219|gb|EGR52452.1| predicted protein [Trichoderma reesei QM6a]
Length = 477
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 69 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 128
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 129 ERAMQTLNGRRVHQSEIRV 147
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V++ L + F G V + D K G+SRG+G V F +A +++S
Sbjct: 166 HIFVGDLSNEVNDDILMQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 225
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 226 MDGEWLGSRAI 236
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + + K
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYVKNFTEDF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ +DGKS+GFG V F+ A ++ LN +++ E +
Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 254
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 26/167 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ + GK +G V F++ + AV ++ + +G+ L + A + K R
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA-QKKAER 265
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + R L Q G+N ++V NLD +D+
Sbjct: 266 QQ-----ELKRKFEELKQKRHESV-------------FGVN------LYVKNLDDTIDDD 301
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+LR F G + + ++ D++G+S+GFG V F+ P EA +++ LN
Sbjct: 302 RLRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELN 348
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A SI
Sbjct: 89 VGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSID 148
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 149 KVNGMLLNGKKVYV 162
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ K K+ +
Sbjct: 113 TLYE--HFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 170 -------GRFKNR-------KDREAELRSKASEFTNIY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA---V 108
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A V
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 269
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
E + + M Q + G+ K++V NLD
Sbjct: 270 ERQAELKQM------------FEQLKRERIRGYQGV----------------KLYVKNLD 301
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+D++KLR F G + V++ + ++G+S+GFG + F +A +++ +N L +
Sbjct: 302 DTIDDEKLRNEFSSFGSIIRVKV-MQQEGQSKGFGFICFSSLEDATKAMIEMNGCFLGSK 360
Query: 229 RITV 232
I++
Sbjct: 361 PISI 364
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKLLKSCKVFVGRFKNRKDREAE 181
>gi|225708572|gb|ACO10132.1| RNA-binding protein 7 [Osmerus mordax]
Length = 266
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
+GI +FV NLD KV E+ L E+F AG + V+I D DGK + FG F H
Sbjct: 1 MGIADETDRTLFVGNLDQKVTEELLFELFLQAGPLIKVKIPKDNDGKQKSFGFAVFKHEE 60
Query: 212 EAVQSISMLNNQNLFERRITVRMDRVADRLDGP 244
A +++LN +LF R + V+ + ++ P
Sbjct: 61 SAPYGMNLLNGTSLFGRTLKVQFRAGSTHINSP 93
>gi|226505736|ref|NP_001150149.1| LOC100283778 [Zea mays]
gi|195605606|gb|ACG24633.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195606158|gb|ACG24909.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637130|gb|ACG38033.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195645710|gb|ACG42323.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|238009788|gb|ACR35929.1| unknown [Zea mays]
gi|413951537|gb|AFW84186.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
L LL++++ G T G SP + + + K+F+ LD+ VD+ KLRE F G+V
Sbjct: 7 LGGLLRHSALVSGITGGSSPAVFNAARL---MSTKLFIGGLDWGVDDVKLREAFSSFGEV 63
Query: 187 ENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
+ D++ G+SRGFG V + A ++IS ++ + + R++ V M
Sbjct: 64 TEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNM 112
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD GK +G V F+ + +KAV+ M+ + G+ + + A + K R+
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D +GKS+GFG V F+ +A +++ +N +++ + I
Sbjct: 203 DDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>gi|403262742|ref|XP_003945221.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 7 [Saimiri
boliviensis boliviensis]
Length = 266
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + + K
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYVKNFTEDF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ +DGKS+GFG V F+ A ++ LN +++ E +
Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 254
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ + GK +G V F++ + AV ++ + +G+ L + A + K R
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA-QKKAER 265
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + R L Q G+N ++V NLD +D+
Sbjct: 266 QQ-----ELKRKFEELKQKRHESV-------------FGVN------LYVKNLDDTIDDD 301
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+LR F G + + ++ D++G+S+GFG V F+ EA +++ LN
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A SI
Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSID 148
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 149 KVNGMLLNGKKVYV 162
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 32/189 (16%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV---EDKG 112
G +T V ++ D G+ + V F+SPD AV ++ G+K KE K
Sbjct: 328 GTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLN-----GKKFSDKEWYVGRAQKK 382
Query: 113 GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVD 172
R M + LQ + K+ NT +++ NLD VD
Sbjct: 383 SEREME----LKEKFEKNLQEAADKYQNT-------------------NLYLKNLDDTVD 419
Query: 173 EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
++KLRE+F G + + ++ D +G SRG G V F +A ++++ +NN+ + + + V
Sbjct: 420 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYV 479
Query: 233 RM-DRVADR 240
+ R DR
Sbjct: 480 ALAQRKEDR 488
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 37/181 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G++ ++ D G+ +G V+++ + A+ K++ +K+ + V +
Sbjct: 233 FCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ 292
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD S S KF N V+V NL
Sbjct: 293 ------------ERDNSP----GSVKF---------------------NNVYVKNLAETT 315
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E L+E+F G + +V + D DG+S+ FG V F+ P EA ++ LN + ++
Sbjct: 316 TEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWY 375
Query: 232 V 232
V
Sbjct: 376 V 376
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F + G + + ++A D G+S+G+G V+++ A +I LN
Sbjct: 215 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 274
Query: 222 NQNLFERRITV 232
+ ++++ V
Sbjct: 275 GMLMNDKKVYV 285
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISML 220
++V +LD V + +L +VF G V +V + D KS G+ V ++ P +A +++ ML
Sbjct: 127 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 186
Query: 221 NNQNLFERRITV 232
N + R I +
Sbjct: 187 NFTPINGRPIRI 198
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 146 PQFLESL-GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
P F +++ ++ K+F+ + Y DE+ LRE F G+V + I +D++ G+SRGFG
Sbjct: 27 PSFFQAIRCMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFG 86
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
+ + EA +I L+ Q+L R I V
Sbjct: 87 FITYTSVEEASSAIQALDGQDLHGRPIRV 115
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQS 216
+ +KV+V NL + ++ LR F+ G++ + + D+D G+SRGFG V F P EA +
Sbjct: 1 MASKVYVGNLSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSA 60
Query: 217 ISMLNNQNLFERRITVRM 234
I LN+Q L RRI V +
Sbjct: 61 IQALNDQELDGRRIKVNL 78
>gi|356535448|ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 51 HLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109
H GDV ++ + +TGKPRG V F P+++ + + H + GR + K+A
Sbjct: 25 HFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLEDKHVID--GRTVDAKKAFS 82
Query: 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
+ D+ +S + +S G G G N K+FV L
Sbjct: 83 RE------------DQQISVTSRGGNSNSGMNSGN--------GGNI-RTKKIFVGGLPP 121
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ E+K R+ F G V +V + D++ G+ RGFG + FD +AV + + +L +
Sbjct: 122 TLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDT-EDAVDRVLHKSFHDLNGK 180
Query: 229 RITVR 233
++ V+
Sbjct: 181 QVEVK 185
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 37/174 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D +G+ +G V++ S + +KA+ K++ +++ + V +
Sbjct: 135 FSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQ 194
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD++ + ++F N VFV NL
Sbjct: 195 ------------ERDMAV----DKTRFTN---------------------VFVKNLSEST 217
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
E++LR++F G + +V + D+DGKSR FG V F++ +A +++ LN L
Sbjct: 218 LEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKL 271
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A+D G+S+G+G V++D A ++I LN
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLN 176
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 177 GMLLNDKQVYV 187
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T V ++ D+ GK R V F++ + +AV ++ ++ + + A K R
Sbjct: 230 GTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRA--QKKSER 287
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
M +L + ++ + + +S G+N +++ NLD + + K
Sbjct: 288 EM--------ELKHRFEQSAQEAVD---------KSQGLN------LYLKNLDDSISDDK 324
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+E+F G + + ++ D G S+G G V F P EA +++S +N + + + + V +
Sbjct: 325 LKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVAL 383
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPV 211
G+N + ++V +LD V + +L ++F G+V +V + D +S G+G V + +P
Sbjct: 20 GVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQ 79
Query: 212 EAVQSISMLNNQNLFERRITV 232
+A +++ +LN L + I +
Sbjct: 80 DAARALEVLNFTPLHGKPIRI 100
>gi|346319566|gb|EGX89167.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cordyceps militaris CM01]
Length = 450
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 144 LSPQFLESLGINCPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRG 201
+SP + P NK ++V LD +V E LR++F G V+NV+I DK+ K
Sbjct: 52 MSPTSPGGFRRSAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGFN 111
Query: 202 FGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
+G VE+D P A +++ LN + + + I V
Sbjct: 112 YGFVEYDDPGAAERAMQTLNGRRVHQSEIRV 142
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 39/180 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 90 FETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAAERAMQTLN-----GRRVHQSEI---- 140
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ Q+N+S +T G F +FV +L +V
Sbjct: 141 --------------RVNWAYQSNTSGKEDTSG---HF------------HIFVGDLSNEV 171
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+++ L + F G V + D K G+SRG+G V F EA +++S ++ + L R I
Sbjct: 172 NDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAI 231
>gi|62089092|dbj|BAD92990.1| Hypothetical protein FLJ11153 variant [Homo sapiens]
Length = 155
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 18 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 77
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 78 GIKLYGRPIKIQF 90
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 44/197 (22%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRF 95
+D D+ L++ S G V V + D T + G V + +P +A+N+++
Sbjct: 46 LDATVTDSQLFEA--FSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFM 103
Query: 96 ETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGIN 155
GR + + +V D R+ S GN
Sbjct: 104 ALNGRAIRVMYSVRDPSLRK--------------------SGVGN--------------- 128
Query: 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQ 215
+F+ NLD +D K L E F G + + ++A+D G+S+G+G V++D A +
Sbjct: 129 ------IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQR 182
Query: 216 SISMLNNQNLFERRITV 232
+I LN L ++++ V
Sbjct: 183 AIDKLNGMLLNDKQVYV 199
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 26/186 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G T I+ D GK +G V F++ D +AV+ ++ G+ KE K ++
Sbjct: 242 GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN-----GKTFDDKEWFVGKAQKK 296
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ +R+ + L Q KF + L +S G N ++V NLD V + K
Sbjct: 297 S-------ERE-TELKQ----KFEQS--LKEAADKSQGSN------LYVKNLDESVTDDK 336
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM- 234
LRE F G + + ++ D G SRG G V F P EA ++I+ +N + + + + V +
Sbjct: 337 LREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALA 396
Query: 235 DRVADR 240
R DR
Sbjct: 397 QRKEDR 402
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 73/174 (41%), Gaps = 37/174 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D +G+ +G V++ + + ++A++K++ +++ + V
Sbjct: 147 FSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHK- 205
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ RD S KF N V+V NL +
Sbjct: 206 -----------LQRDPSG----EKVKFTN---------------------VYVKNLSESL 229
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
+++L +VF G + I D +GKS+GFG V F++ +A +++ LN +
Sbjct: 230 SDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 283
>gi|226293434|gb|EEH48854.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb18]
Length = 478
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 101 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 160
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 161 SNQNLMGRLVYVREDREAE 179
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 22/192 (11%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV + GR + ++E
Sbjct: 120 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATLSNQNLMGRLVYVRE----- 174
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSK--FGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
DR+ S+ FG G +++V+NL +
Sbjct: 175 ------------DREAEPRFTGAPSRGDFGGPGRGGYGGGYGSGSGAGGSRQIYVSNLPF 222
Query: 170 KVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226
V + L+++FR A G V ++ +D G+ +G G V F+ +A +I N +
Sbjct: 223 SVGWQDLKDLFRQAAQQGAVVRADVHVDPSGRPKGSGIVAFESADDARNAIQQFNGYDWQ 282
Query: 227 ERRITVRMDRVA 238
R + VR DR A
Sbjct: 283 GRTLEVREDRFA 294
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
+FV NL + + L ++F GKVE EI + +G+SRG G VEFD
Sbjct: 379 IFVRNLPWSTCNEDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVEFD 425
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
ST+G V EI + G+ RG+ +VEF S + A+NK ++ GR L
Sbjct: 397 FSTIGKVERAEIQYEPNGRSRGTGVVEFDSVENAETAINKFTGYQYGGRPL 447
>gi|453084886|gb|EMF12930.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 490
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%)
Query: 57 DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
DV + ++L G +G IVE+Q+ D + A+ ++ GR + ++E D+
Sbjct: 115 DVIFADVLLLPNGMSKGCGIVEYQTRDQAKIAIEQLSNTPLMGRLVYVRE---DRETEPR 171
Query: 117 MGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI---NKVFVANLDYKVDE 173
G D F + G G +++FV+NL Y+V
Sbjct: 172 FSGPPRGGIDGGGFQGGGRGGFHSRGGFQGGMGGGYGGGMQQQGGRSQIFVSNLPYQVGW 231
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233
+ L+++FR AG V ++ L +DG +G G V F+ P +A +I+ N + R + VR
Sbjct: 232 QDLKDLFRQAGNVIRADVHLGQDGNPKGSGVVAFETPDDAQNAINTFNGYDWQGRPLEVR 291
Query: 234 MDR 236
DR
Sbjct: 292 EDR 294
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV--EIALDKDGKSRGFGT 204
+ ++S+ + +V+V NL Y V L++ R G ++ + ++ L +G S+G G
Sbjct: 75 EIMKSVAESSQQDRRVYVGNLSYDVKWHHLKDHMRKDGTLDVIFADVLLLPNGMSKGCGI 134
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD-RLDGPVR 246
VE+ +A +I L+N L R + VR DR + R GP R
Sbjct: 135 VEYQTRDQAKIAIEQLSNTPLMGRLVYVREDRETEPRFSGPPR 177
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+ V NL + + L E+F+ G VE EI + +G+SRG G V+F + +A SI
Sbjct: 395 IHVKNLPWSTSNEDLVELFQTIGTVERAEIQYEPNGRSRGSGVVQFSNTSDAQTSIEKF 453
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
G+V ++ G P+GS +V F++PD + A+N + ++ +GR L ++E
Sbjct: 238 FRQAGNVIRADVHLGQDGNPKGSGVVAFETPDDAQNAINTFNGYDWQGRPLEVRE 292
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ALD G+S+G+G V+FD+ A+++I LN
Sbjct: 41 IFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLN 100
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 101 GMLLNDKQVYV 111
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G +T + ++ D GK R V F++ D +AV+ ++ G+ + KE K
Sbjct: 150 FSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLN-----GKLVDDKEWYVGK 204
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+++ + +L + + + Y G N +++ NLD +
Sbjct: 205 AQKKSER-----EVELKHRFEQTMKEAADKYQ---------GAN------LYIKNLDDSI 244
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ KL+E+F G + + ++ D +G SRG G V F P EA +++ +N + + + +
Sbjct: 245 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 304
Query: 232 VRM-DRVADR 240
V + R DR
Sbjct: 305 VALAQRKEDR 314
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 37/172 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + ++ D +G+ +G V+F + + KA+ K++ +++ + +
Sbjct: 59 FSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFL--- 115
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R G VD+ SKF N VFV NL
Sbjct: 116 ---RKQERDGVVDK----------SKF---------------------NNVFVKNLSETT 141
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
E+ L + F G + ++ + D DGKSR FG V F++ +A +++ LN +
Sbjct: 142 TEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGK 193
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 81 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 140
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 141 ERAMQNLNGRRVHQSEIRV 159
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 107 FETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQNLN-----GRRVHQSEI---- 157
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ Q+N++ +T G F +FV +L +V
Sbjct: 158 --------------RVNWAYQSNTTSKEDTSG---HF------------HIFVGDLSNEV 188
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+++ L + F G V + D K G+SRG+G V F +A +++S ++ + L R I
Sbjct: 189 NDEVLTQAFTSFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAI 248
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIGM 256
R + + + + L+ +GM
Sbjct: 249 --RCNWANQKGQPSMAQQQALQQVGM 272
>gi|307209644|gb|EFN86520.1| Mitotic spindle assembly checkpoint protein MAD2A [Harpegnathos
saltator]
Length = 211
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSS----DENDAASVNTASKT 320
L + WL+Q KV K+ L+I+N NTKEVLE+WDFK++Y+ D N A +
Sbjct: 69 LGQIQEWLIQRKVHKIVLVITNVNTKEVLEKWDFKVEYEDQKPNGVDSNVKADLPEIGTK 128
Query: 321 DSTNAEKD 328
DS +K+
Sbjct: 129 DSKTIQKE 136
>gi|225447115|ref|XP_002273998.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial [Vitis
vinifera]
gi|297739201|emb|CBI28852.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FVA L + VDEK L++ F G V V I DKD G+SRGFG V F V+A +
Sbjct: 39 KLFVAGLSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDA 98
Query: 220 LNNQNLFER--RITVRMDRVADRLDGPVRLPEGL 251
++ + R R++ +++V GP+ +P L
Sbjct: 99 MDGKAFLGRPLRVSYALEKVR---GGPIVVPRRL 129
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219
K++V NL Y+V+E LR+ F GKV++V I DK G+S+GFG VE EA +I
Sbjct: 2 KIYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEG 61
Query: 220 LNNQNLFERRITVRMDR 236
LN + L R I V R
Sbjct: 62 LNGKELKGRAINVNEAR 78
>gi|156086376|ref|XP_001610597.1| single stranded G-strand telomeric DNA-binding protein [Babesia
bovis T2Bo]
gi|154797850|gb|EDO07029.1| single stranded G-strand telomeric DNA-binding protein, putative
[Babesia bovis]
Length = 196
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL ++V + L++ + G+V +I D DGKS+G G VEF + A +++ L
Sbjct: 8 RVYVGNLSWRVKWQDLKDHMKQVGEVIRADIIEDFDGKSKGCGIVEFVDEITAQRAMDEL 67
Query: 221 NNQNLFERRITVRMDR 236
N+ LF+R I VR DR
Sbjct: 68 NDTMLFDRPIFVREDR 83
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
H+ VG+V +I+ D GK +G IVEF ++A+++++ R + ++E E+
Sbjct: 26 HMKQVGEVIRADIIEDFDGKSKGCGIVEFVDEITAQRAMDELNDTMLFDRPIFVREDREN 85
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
RN ++RD ++ G+ G+ + V NL ++
Sbjct: 86 AYNFRNTRRQN-MNRDWPPY-RSIRGPAGDMGGIC----------------IVVTNLQWR 127
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+ L+++F+ + V+I +DGKSRG V +A IS + L R I
Sbjct: 128 TSWQDLKDLFKTCAPINRVDILTREDGKSRGVAKVYVQCEEDANALISTYDGYVLDGREI 187
Query: 231 TVRMD 235
V+ D
Sbjct: 188 CVKYD 192
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDS 561
M+Q S V V NL + WQ+L+D + G++ A+I K KG G+V F
Sbjct: 1 MSQDSKCR---VYVGNLSWRVKWQDLKDHMKQVGEVIRADIIEDFDGKSKG-CGIVEFVD 56
Query: 562 EWTAKRAIDMMDRT 575
E TA+RA+D ++ T
Sbjct: 57 EITAQRAMDELNDT 70
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 79 APEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAA 138
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 139 DRAMQTLNGRRVHQSEIRV 157
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 40/206 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 105 FETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN-----GRRVHQSEI---- 155
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R N SA ++ S+ F +FV +L +V
Sbjct: 156 --RVNWA----YQAATSATKEDTSNHF----------------------HIFVGDLSNEV 187
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+++ L + F + G V + D K G+SRG+G V F +A +++S ++ + L R I
Sbjct: 188 NDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Query: 231 TVRMDRVADRLDGPVRLPEGLKSIGM 256
R + + + + + ++GM
Sbjct: 248 --RCNWANQKGQPSIAQQQAMSAVGM 271
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V ++ D+ G+ RG V F +KAV++M+ E G+ + + A
Sbjct: 209 FSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRA---- 264
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ + G + R + Q+ ++ G+N ++V NLD +
Sbjct: 265 --QKRLERQGELKRKFELIKQDRIQRYQ-------------GVN------LYVKNLDDGI 303
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D+++LR+ F G + + ++ D +SRGFG V F P EA ++++ +N +
Sbjct: 304 DDERLRKEFAPYGTITSAKVMTDGP-QSRGFGFVCFSSPEEATKAVTEMNGR 354
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 127 LSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186
++ +L N+ F + + E LG V++ N ++KL+EVF G+
Sbjct: 156 MNGMLLNDRKVFVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRT 215
Query: 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD 242
+V + D+ G+SRGFG V F H +A +++ +N L + I V R RL+
Sbjct: 216 LSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYV--GRAQKRLE 269
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 42/199 (21%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+G A L++ + + V +V Y N +TG+ RG V + + KA+ ++R++ GR
Sbjct: 141 EGLAQLFEQAGVVEVAEVIY----NRETGQSRGFGFVTMSTIEEADKAIEMLNRYDINGR 196
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + A +G R ++ +F +P F
Sbjct: 197 LLNVNRAA-PRGSR----------------VERPPRQF------APAF------------ 221
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+ +V NL ++VD+ +L ++F G+V N + D++ G+SRGFG V E +IS
Sbjct: 222 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 281
Query: 220 LNNQNLFER--RITVRMDR 236
L+ Q L R R+ V +R
Sbjct: 282 LDGQELDGRPLRVNVAAER 300
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
KV+V NL Y VD + L ++F AG VE E+ +++ G+SRGFG V EA ++I M
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 220 LNNQNLFERRITVRMDRVADR 240
LN ++ R + V +R A R
Sbjct: 188 LNRYDINGRLLNV--NRAAPR 206
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 42/199 (21%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+G A L++ + + V +V Y N +TG+ RG V + + KA+ ++R++ GR
Sbjct: 142 EGLAQLFEQAGVVEVAEVIY----NRETGQSRGFGFVTMSTIEEADKAIEMLNRYDINGR 197
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + A +G R ++ +F +P F
Sbjct: 198 LLNVNRAA-PRGSR----------------VERPPRQF------APAF------------ 222
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+ +V NL ++VD+ +L ++F G+V N + D++ G+SRGFG V E +IS
Sbjct: 223 RAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISA 282
Query: 220 LNNQNLFER--RITVRMDR 236
L+ Q L R R+ V +R
Sbjct: 283 LDGQELDGRPLRVNVAAER 301
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
KV+V NL Y VD + L ++F AG VE E+ +++ G+SRGFG V EA ++I M
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 220 LNNQNLFERRITVRMDRVADR 240
LN ++ R + V +R A R
Sbjct: 189 LNRYDINGRLLNV--NRAAPR 207
>gi|342870153|gb|EGU73450.1| hypothetical protein FOXB_16088 [Fusarium oxysporum Fo5176]
Length = 474
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK +++ LD +V E+ LR++F G V+NV+I DK+ + +G VE+D P A
Sbjct: 78 APEPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAA 137
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 138 ERAMQTLNGRRVHQSEIRV 156
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F EA +++S
Sbjct: 175 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSS 234
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 235 MDGEWLGSRAI 245
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L++ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|432105727|gb|ELK31918.1| RNA-binding protein 7 [Myotis davidii]
Length = 255
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F G V V+I DKDGK + F V F H V ++++LN
Sbjct: 10 LFVGNLETKVTEELLFELFHQGGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 69
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 70 GIKLFGRPIKIQF 82
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 37/174 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D +G+ +G V++ S + +KA+ K++ +++ + V
Sbjct: 135 FSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKH 194
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD++ + ++F N VFV NL
Sbjct: 195 ------------ERDMAV----DKTRFTN---------------------VFVKNLSEST 217
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
E++LR++F G + +V + D+DGKSR FG V F++ +A +++ LN L
Sbjct: 218 LEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKL 271
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T V ++ D+ GK R V F++ + +AV ++ ++ + + A K R
Sbjct: 230 GAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRA--QKKSER 287
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
M +L + ++ + + +S G+N +++ NLD + ++K
Sbjct: 288 EM--------ELKHRFEQSAKEAVD---------KSQGLN------LYIKNLDDSISDEK 324
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+E+F G + + ++ D G S+G G V F +P EA +++S +N + + + + V +
Sbjct: 325 LKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVAL 383
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A+D G+S+G+G V++D A ++I LN
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLN 176
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 177 GMLLNDKQVYV 187
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPV 211
G+N + ++V +LD V + +L ++F G+V +V + D +S G+G V + +P
Sbjct: 20 GVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQ 79
Query: 212 EAVQSISMLNNQNLFERRITV 232
+A +++ +LN L + I +
Sbjct: 80 DAARALEVLNFTPLHGKPIRI 100
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDDIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
L++ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>gi|383858225|ref|XP_003704602.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2A-like
[Megachile rotundata]
Length = 211
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYD 303
L + WL+Q KVQK++L+I+N NTKEVLE+WDF++ Y+
Sbjct: 69 LGQIQEWLIQRKVQKITLVITNVNTKEVLEKWDFRVDYE 107
>gi|260549134|ref|ZP_05823355.1| RNA-binding protein [Acinetobacter sp. RUH2624]
gi|260407862|gb|EEX01334.1| RNA-binding protein [Acinetobacter sp. RUH2624]
Length = 87
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 10 KILVRNLDRSVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPREAIKAIKG 69
Query: 220 LN 221
LN
Sbjct: 70 LN 71
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 28/168 (16%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ D GK +G V +++ + AV ++ + +G+ L + A + K R
Sbjct: 207 GKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARA-QKKAER 265
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLES-LGINCPLINKVFVANLDYKVDE 173
+ Q KF L + ES G+N ++V NLD +D+
Sbjct: 266 Q----------------QELKRKFEE---LKKKRHESVFGVN------LYVKNLDDSIDD 300
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++LR+ F L G + + ++ D++G+S+GFG V F P EA +++ LN
Sbjct: 301 ERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELN 348
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + + K
Sbjct: 110 FSAFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V++ N +
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYIKNFTDEF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ DGKS+GFG V ++ A ++ LN +++ E +
Sbjct: 195 DDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTL 254
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277
>gi|429852984|gb|ELA28088.1| rnp domain-containing protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 415
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 47 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATL 106
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 107 SNQNLMGRLVYVREDREAE 125
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++V NL + + L E+F GKVE EI + G+SRG G V FD A +I+
Sbjct: 316 IYVRNLPWSTSNEDLVELFTTIGKVEQAEIQYEPSGRSRGTGVVRFDSADTAETAIAKF 374
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G IVE+ + + + AV + GR + ++E E +
Sbjct: 66 MRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQNAVATLSNQNLMGRLVYVREDREAE 125
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R +G + G G S +++VANL Y V
Sbjct: 126 P--RFIGATANRGGFGGGGMNPGGMNPGGFGGGGYNAGGS--------RQIYVANLPYTV 175
Query: 172 DEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+ L+++FR A G V ++ L DG+ +G G V F++P +A +I
Sbjct: 176 GWQDLKDLFRQAARNGVVIRADVHLGPDGRPKGSGIVVFENPDDARTAIQQF 227
>gi|407929152|gb|EKG21988.1| MFS pantothenate transporter [Macrophomina phaseolina MS6]
Length = 345
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 41/188 (21%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI-----K 105
S G++ I+ D G RG VEF++ D A+ +M++ GR+L + +
Sbjct: 181 EFSRFGNIVKTTIIRDPAGLSRGFGYVEFENDDSAAVAIVQMNQRVIDGRRLTVQHHRRR 240
Query: 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVA 165
E E++ RRN G +N P +F+
Sbjct: 241 EQTEERPRRRNEGR----------------------------------VNPP-SKTLFIG 265
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N+ +++ ++ L ++FR V +V +A+D + G+ RGF +F A ++ +L+ +
Sbjct: 266 NMSFEMSDRDLNDLFRNIRNVLDVRVAIDRRTGQPRGFAHADFIDETSATKAKELLSQKE 325
Query: 225 LFERRITV 232
L+ RR+ V
Sbjct: 326 LYGRRLRV 333
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NL Y+ E +LR+ F G + I D G SRGFG VEF++ A +I +N
Sbjct: 164 LYVGNLFYQTQEDQLRQEFSRFGNIVKTTIIRDPAGLSRGFGYVEFENDDSAAVAIVQMN 223
Query: 222 NQNLFERRITVRMDRVADRL-DGPVRLPEG 250
+ + RR+TV+ R ++ + P R EG
Sbjct: 224 QRVIDGRRLTVQHHRRREQTEERPRRRNEG 253
>gi|164424152|ref|XP_962723.2| hypothetical protein NCU07874 [Neurospora crassa OR74A]
gi|157070397|gb|EAA33487.2| hypothetical protein NCU07874 [Neurospora crassa OR74A]
Length = 480
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 117 MGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK--VFVANLDYKVDEK 174
MGG G D S ++ S+ GN +G P NK ++V LD +V E
Sbjct: 61 MGGNG----DTSGIMSPTSA--GNPFGRR---------AAPEPNKRALYVGGLDPRVTED 105
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
LR++F G V+NV+I DK+ K +G VE+D P A +++ LN + + + I V
Sbjct: 106 VLRQIFETTGHVQNVKIIPDKNQKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRV 163
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F +A +++S
Sbjct: 182 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 241
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 242 MDGEWLGSRAI 252
>gi|443897756|dbj|GAC75095.1| cyclophilin type peptidyl-prolyl cis-trans isomerase [Pseudozyma
antarctica T-34]
Length = 858
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD + L + F+ G + + + D DGKSR FG V F P EA ++ ++
Sbjct: 410 LFIKNLDGAISSNDLFDTFKAFGHIVSARVMRDNDGKSREFGFVSFTTPDEAHHALQAMD 469
Query: 222 NQNLFERRITVRM 234
N L R+ITVR+
Sbjct: 470 NAKLGARKITVRL 482
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 37/204 (18%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T ++ D GKP+G V F++ D KAV ++ G+ KE + ++
Sbjct: 243 GKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLN-----GKTFDDKEWFVGRAQKK 297
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ +R++ +Q S + +F S ++V NLD V ++K
Sbjct: 298 S-------EREMELKVQYEQS----LKEAADKFQSS---------NLYVKNLDDSVSDEK 337
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-----MLNNQNLFERRI 230
L+E+F G V + ++ D +G SRG G V F P EA +++S M+ N+ L+
Sbjct: 338 LKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVA 397
Query: 231 TVRMDRVADRLDG------PVRLP 248
+ DR A RL PV +P
Sbjct: 398 QRKEDRRA-RLQAQFSQMRPVAMP 420
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 42/182 (23%)
Query: 52 LSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S +G V V + D T + G V F SP +A+ +++ G+ + + + D
Sbjct: 60 FSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQELNYIPLNGKPVRVMYSHRD 119
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
RR+ G +F+ NLD
Sbjct: 120 PSVRRSGAG-----------------------------------------NIFIKNLDKS 138
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
+D K L + F + G + + ++A+D G+S+G+G V+++ A +++ LN L ++++
Sbjct: 139 IDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQV 198
Query: 231 TV 232
V
Sbjct: 199 YV 200
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/231 (19%), Positives = 102/231 (44%), Gaps = 39/231 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D +G+ +G V++++ + +KA+ +
Sbjct: 148 FSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQ-------------------- 187
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
L+ +L N+ + + L Q +S G N + V+V NL
Sbjct: 188 ---------------LNGMLLNDKQVYVGPF-LRRQERDSTG-NKTIFTNVYVKNLAEST 230
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ L+ +F GK+ + + D +GK +GFG V F++ +A +++ LN + ++
Sbjct: 231 TDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWF 290
Query: 232 V-RMDRVADR-LDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKL 280
V R + ++R ++ V+ + LK ++ ++++ + + EK+++L
Sbjct: 291 VGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKEL 341
>gi|390599102|gb|EIN08499.1| RNA-binding domain-containing protein, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 200
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
++FV NL Y+V + L+++FR AG V +++L D +SRG+GTV +A ++I M
Sbjct: 5 TQLFVGNLPYRVRWQDLKDLFRKAGTVLRADVSLGPDNRSRGYGTVLLASAEDAGRAIDM 64
Query: 220 LNNQNLFERRITVRMDRVADRLD 242
N + R + VR DR+ + D
Sbjct: 65 FNGYSWQTRVLEVRPDRLGEGAD 87
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+ + L+++FR AG + ++AL +DG+SRGFG V F +A +++ M N
Sbjct: 145 FHTQWQDLKDLFRQAGVILRADVALGQDGRSRGFGMVSFATEADAERAVRMFN 197
>gi|425741812|ref|ZP_18859945.1| hypothetical protein ACINWC487_0445 [Acinetobacter baumannii
WC-487]
gi|425490623|gb|EKU56920.1| hypothetical protein ACINWC487_0445 [Acinetobacter baumannii
WC-487]
Length = 79
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 2 KILVRNLDRLVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPREAIKAIKG 61
Query: 220 LN 221
LN
Sbjct: 62 LN 63
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 38/174 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ + D+ G RG V F S + R A+ K++ +K+ + + + +
Sbjct: 127 FSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRR 186
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ Q ++ F N Y V NL +
Sbjct: 187 ------------DRE-----QEKATHFKNLY---------------------VKNLSEEF 208
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
E+ LRE+F G++ + ++ LD++G+SR FG V F++P AV ++ L+ + L
Sbjct: 209 TEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQL 262
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS-- 218
K+++ NL+ +D K + E F + G + N +A D++G SRG+G V FD A +I
Sbjct: 108 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 219 ---MLNNQNLFERRITVRMDRVADR 240
+ NNQ + + R DR ++
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEK 192
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 117 MGGGGGVDRDLSALLQ-NNSSKFGNTYGLSPQFLESLGINCPLINK--VFVANLDYKVDE 173
MGGG D SAL+ +S FG P NK ++V LD +V E
Sbjct: 59 MGGG-----DKSALMSPGGTSPFGRR-------------TAPEPNKRALYVGGLDARVTE 100
Query: 174 KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
LR++F G V+NV+I DK+ K +G VE+D P A +++ LN + + + I V
Sbjct: 101 DVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRV 159
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F + G V + D K G+SRG+G V F +A +++S
Sbjct: 179 HIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 238
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGM 256
++ + L R I R + + + + ++++GM
Sbjct: 239 MDGEWLGSRAI--RCNWANQKGQPSIAQQQAMQAMGM 273
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 56 GDVTYVEIL-NDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
G V E++ N T RG V + + AV K + ++ GR LV+ +A KG R
Sbjct: 133 GTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKA-SPKGSR 191
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
P+ E + +++VANL ++VD
Sbjct: 192 -------------------------------PERTERAPRTFEPVLRIYVANLAWEVDNS 220
Query: 175 KLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER--RIT 231
+L +VF GK+ + + D++ G+SRGFG V E +I+ L+ Q+L R R++
Sbjct: 221 RLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVS 280
Query: 232 VRMDR 236
V DR
Sbjct: 281 VAEDR 285
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D + + G A + FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ D+ G SRGFG V F+ A Q+IS +N
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMN 159
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEG 250
L +R++ + A R+ R P G
Sbjct: 160 GMLLNDRKVGAQPCCPAGRVGSGKRPPSG 188
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V NLD +D++KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 249 LYVKNLDDCIDDEKLRKEFSPYGTITSAKV-MTESGHSKGFGFVCFSSPEEATKAVTEMN 307
Query: 222 NQ 223
+
Sbjct: 308 GR 309
>gi|421642959|ref|ZP_16083470.1| hypothetical protein ACINIS235_0504 [Acinetobacter baumannii
IS-235]
gi|421649364|ref|ZP_16089759.1| hypothetical protein ACINIS251_0441 [Acinetobacter baumannii
IS-251]
gi|421698068|ref|ZP_16137612.1| hypothetical protein ACINIS58_0506 [Acinetobacter baumannii IS-58]
gi|404573114|gb|EKA78154.1| hypothetical protein ACINIS58_0506 [Acinetobacter baumannii IS-58]
gi|408511525|gb|EKK13173.1| hypothetical protein ACINIS235_0504 [Acinetobacter baumannii
IS-235]
gi|408514137|gb|EKK15749.1| hypothetical protein ACINIS251_0441 [Acinetobacter baumannii
IS-251]
Length = 79
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE+ + DKD GKS+GFG VE +P EA+++I
Sbjct: 2 KILVRNLDRSVTEAEVLELFKAYGKVESCVVVTDKDTGKSKGFGFVEMPNPGEAIKAIKG 61
Query: 220 LN 221
LN
Sbjct: 62 LN 63
>gi|297839301|ref|XP_002887532.1| hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp.
lyrata]
gi|297333373|gb|EFH63791.1| hypothetical protein ARALYDRAFT_476560 [Arabidopsis lyrata subsp.
lyrata]
Length = 292
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
I C +K+FV + Y DE LRE F G+V + +I +D++ G+SRGF V F E
Sbjct: 28 IRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEE 87
Query: 213 AVQSISMLNNQNLFERRITV 232
A ++ L+ Q+L RRI V
Sbjct: 88 ASNAM-QLDGQDLHGRRIRV 106
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
SP +S I C +K+FV L Y DE+ LR+ F G+V +I D++ G+SRGFG
Sbjct: 18 SPALYQS--IRCMSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFG 75
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
+ + EA +I+ L+ ++L R I V
Sbjct: 76 FITYASSEEASAAITALDGKDLDGRNIRV 104
>gi|432893293|ref|XP_004075907.1| PREDICTED: RNA-binding protein 7-like isoform 1 [Oryzias latipes]
Length = 260
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 152 LGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211
+GI +F+ NLD KV E+ L E+F AG + +I D DG+ + FG V + H V
Sbjct: 1 MGIEEEADRTLFIRNLDSKVTEELLFELFLQAGPLVRTKIPKDTDGRQKTFGFVVYKHEV 60
Query: 212 EAVQSISMLNNQNLFERRITVRM 234
A ++ +L+ +LF R I V+
Sbjct: 61 SAPYAMQLLDGTSLFGRNIHVQF 83
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK +++ LD +V E+ LR++F G V+NV+I DK+ + +G VE+D P A
Sbjct: 76 APEPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAA 135
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 136 ERAMQTLNGRRVHQSEIRV 154
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F EA +++S
Sbjct: 173 HIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSS 232
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 233 MDGEWLGSRAI 243
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARALEFTNIY---------------------VKNLPVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+E+F GK+ +V++ D G SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 AGRAQKRVER 272
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D++G R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLRRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 47/209 (22%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 142 FVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>gi|407929404|gb|EKG22234.1| hypothetical protein MPH_00413 [Macrophomina phaseolina MS6]
Length = 159
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
++K+F+ L + D+ LR+ F G+VE + D+D G+SRGFG V F +A +I
Sbjct: 1 MSKLFIGGLAWHTDDATLRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRFTQESDAEAAI 60
Query: 218 SMLNNQNLFERRITVRMDRVADR 240
+NN R T+R+D+ +DR
Sbjct: 61 QAMNNVEFDGR--TIRVDKASDR 81
>gi|400595086|gb|EJP62896.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 468
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ K +G VE+D P A
Sbjct: 62 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAA 121
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 122 DRAMQTLNGRRVHQSEIRV 140
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 39/180 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
T G V V+I+ D K VE+ P +A+ ++ GR++ E
Sbjct: 88 FETTGHVQNVKIIPDKNAKGFNYGFVEYDDPGAADRAMQTLN-----GRRVHQSEI---- 138
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
++ Q NSS +T G F +FV +L +V
Sbjct: 139 --------------RVNWAYQANSSGKEDTSG---HF------------HIFVGDLSNEV 169
Query: 172 DEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230
++ L + F G V + D K G+SRG+G V F EA +++S ++ + L R I
Sbjct: 170 NDDILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAI 229
>gi|293332553|ref|NP_001169063.1| uncharacterized protein LOC100382904 [Zea mays]
gi|223974745|gb|ACN31560.1| unknown [Zea mays]
Length = 426
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y V L++ R AG+V ++ L +G S+G G VE+ +A +++ L
Sbjct: 51 RVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQHAVNTL 110
Query: 221 NNQNLFERRITVRMDRVAD 239
+NQNL R + VR DR A+
Sbjct: 111 SNQNLMGRLVYVREDREAE 129
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106
G V ++L+D +G+P+G+ IV F+SPD R A+ + + ++ +GR L ++E
Sbjct: 182 GAVIRADVLSDPSGRPKGTGIVVFESPDDARVAIQQFNGYDWQGRILEVRE 232
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+T+G V EI + G+ RG+ +VEF SP+ A++K ++ GR L I
Sbjct: 344 FTTIGKVERAEIQYEGNGRSRGTGVVEFDSPETAETAISKFTGYQYGGRPLGI 396
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
+ V+NLP + ++L D F G ++ AEI+ +G+ G+V FDS TA+ AI
Sbjct: 325 VIYVRNLPWSTCNEDLVDLFTTIGKVERAEIQYEGNGRSRGTGVVEFDSPETAETAISKF 384
Query: 573 DRTRIDGKIIDVTF 586
+ G+ + +TF
Sbjct: 385 TGYQYGGRPLGITF 398
>gi|430813550|emb|CCJ29111.1| unnamed protein product, partial [Pneumocystis jirovecii]
gi|430814149|emb|CCJ28585.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 299
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 31/201 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G+V + ++L G +G + E+ + D + A+N + GR + ++E E +
Sbjct: 116 MKQAGEVIFADVLMLPNGMSKGCGVAEYATRDEAQNAINTLSNQTLMGRMVYVREDREQE 175
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R G GV R +YG P N ++FV NL Y V
Sbjct: 176 P--RFGGPPPGVPR---------------SYGGYPGDTRGSSYNSSNGRQLFVQNLPYNV 218
Query: 172 DEKKLREVFRLAG-----------KVENV---EIALDKDGKSRGFGTVEFDHPVEAVQSI 217
+ ++++FR AG K NV +I L DG+ +G G V F+ EA +
Sbjct: 219 GWQDIKDLFRSAGMLFQYLPYNSYKTGNVIRTDIHLTPDGRPKGTGIVLFETVEEARNAQ 278
Query: 218 SMLNNQNLFERRITVRMDRVA 238
+ N + R I VR DR A
Sbjct: 279 ATFNGYDWQGRIIEVREDRFA 299
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V++ NL Y V L++ + AG+V ++ + +G S+G G E+ EA +I+ L
Sbjct: 97 RVYIGNLSYDVKWHHLKDFMKQAGEVIFADVLMLPNGMSKGCGVAEYATRDEAQNAINTL 156
Query: 221 NNQNLFERRITVRMDRVAD-RLDGP 244
+NQ L R + VR DR + R GP
Sbjct: 157 SNQTLMGRMVYVREDREQEPRFGGP 181
>gi|307175605|gb|EFN65514.1| Mitotic spindle assembly checkpoint protein MAD2A [Camponotus
floridanus]
Length = 211
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 268 VANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTNAE 326
V WL+Q KV K++L+I+N NTKEVLE+WDFK+ Y ++ +N+ K D + E
Sbjct: 72 VQEWLIQRKVHKITLVITNVNTKEVLEKWDFKVDY----EDQKTNGINSNVKADLSEVE 126
>gi|15221187|ref|NP_177563.1| glycine-rich RNA-binding protein 5 [Arabidopsis thaliana]
gi|12324900|gb|AAG52402.1|AC020579_4 putative RNA-binding protein; 37609-36098 [Arabidopsis thaliana]
gi|25083154|gb|AAN72048.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|30023780|gb|AAP13423.1| At1g74230 [Arabidopsis thaliana]
gi|332197447|gb|AEE35568.1| glycine-rich RNA-binding protein 5 [Arabidopsis thaliana]
Length = 289
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
I C +K+FV + Y DE LRE F G+V + +I +D++ G+SRGF V F E
Sbjct: 28 IRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEE 87
Query: 213 AVQSISMLNNQNLFERRITV 232
A ++ L+ Q+L RRI V
Sbjct: 88 ASNAM-QLDGQDLHGRRIRV 106
>gi|395821254|ref|XP_003783961.1| PREDICTED: putative RNA-binding protein 11 [Otolemur garnettii]
Length = 237
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F H SI++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHAESVSYSIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>gi|303283324|ref|XP_003060953.1| cold-shock protein with RNA binding domain [Micromonas pusilla
CCMP1545]
gi|226457304|gb|EEH54603.1| cold-shock protein with RNA binding domain [Micromonas pusilla
CCMP1545]
Length = 316
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V V NL + ++L+ F G + +A+D+ G+SRG+GTV F +A +I +
Sbjct: 238 RVVVLNLPFSTTWEELKATFASVGSIARAHVAVDETGRSRGYGTVRFQTEEDATSAIEKM 297
Query: 221 NNQNLFERRITVRMDR 236
N R +TVRMD+
Sbjct: 298 NGAEYEGRVLTVRMDK 313
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
VVV NLP + TW+EL+ F + G I A + + +G G VRF +E A AI+ M
Sbjct: 239 VVVLNLPFSTTWEELKATFASVGSIARAHVAVDETGRSRG-YGTVRFQTEEDATSAIEKM 297
Query: 573 DRTRIDGKIIDV 584
+ +G+++ V
Sbjct: 298 NGAEYEGRVLTV 309
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
++VG + + D+TG+ RG V FQ+ + A+ KM+ E +GR L ++
Sbjct: 257 FASVGSIARAHVAVDETGRSRGYGTVRFQTEEDATSAIEKMNGAEYEGRVLTVR 310
>gi|149716524|ref|XP_001502226.1| PREDICTED: RNA-binding protein 7-like [Equus caballus]
Length = 266
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I D+DGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDRDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>gi|262280867|ref|ZP_06058650.1| RNA-binding protein [Acinetobacter calcoaceticus RUH2202]
gi|299771675|ref|YP_003733701.1| RNA-binding protein [Acinetobacter oleivorans DR1]
gi|262257767|gb|EEY76502.1| RNA-binding protein [Acinetobacter calcoaceticus RUH2202]
gi|298701763|gb|ADI92328.1| RNA-binding protein [Acinetobacter oleivorans DR1]
Length = 79
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+ V NLD V E ++ E+F+ GKVE + DKD GKS+GFG VE +P EA+++I
Sbjct: 2 KILVRNLDRAVSETEILELFKAFGKVETCVLVTDKDTGKSKGFGFVEMPNPREAIKAIKG 61
Query: 220 LN 221
LN
Sbjct: 62 LN 63
>gi|114640401|ref|XP_001151010.1| PREDICTED: RNA-binding protein 7 isoform 1 [Pan troglodytes]
gi|397467681|ref|XP_003805538.1| PREDICTED: RNA-binding protein 7 [Pan paniscus]
gi|410213740|gb|JAA04089.1| RNA binding motif protein 7 [Pan troglodytes]
gi|410258170|gb|JAA17052.1| RNA binding motif protein 7 [Pan troglodytes]
gi|410291802|gb|JAA24501.1| RNA binding motif protein 7 [Pan troglodytes]
gi|410332447|gb|JAA35170.1| RNA binding motif protein 7 [Pan troglodytes]
Length = 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 28/171 (16%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVIKEAVED 110
G +T ++ D GK RG V F+ P+ +AV K++ E + G+ L + A
Sbjct: 203 FEKFGPITSHRVMTKD-GKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRA--Q 259
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
K R M + R L +++ G+N ++V NLD
Sbjct: 260 KKNERQME----LKRRFEQLKMERLTRYH-------------GVN------LYVKNLDDT 296
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+D+++LR+ F G + + ++ LD +G+S+GFG V F P EA ++++ +N
Sbjct: 297 IDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMN 346
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 49/271 (18%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A+L++ S+ G V + + D T + G A V FQ P +A++ M+ KGR
Sbjct: 15 EATLFE--KFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTMNFDPIKGRP 72
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 73 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 91
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD K+D K + + F G + + ++A D+ G+S+G+G V F+ A SI +N
Sbjct: 92 VFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVN 151
Query: 222 NQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLS 281
L E+++ V R R + L E K N +D+ L++ +K
Sbjct: 152 GMLLNEKKVYV--GRFISRKEREKELGEKAKLFTNVYVKNFG--EDLTEEALRDMFEKFG 207
Query: 282 LIISNR-NTKEVLERWDFKLQYDKSSDENDA 311
I S+R TK+ R + ++K D +A
Sbjct: 208 PITSHRVMTKDGKSRGFGFVAFEKPEDAEEA 238
>gi|7023641|dbj|BAA92036.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>gi|341877935|gb|EGT33870.1| hypothetical protein CAEBREN_20987 [Caenorhabditis brenneri]
Length = 528
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 52 LSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110
S+VG V V I+ D TG+ +G VEF + V G L
Sbjct: 140 FSSVGAVRDVRIITDSRTGRSKGICYVEFWDEESV-----------PLGLAL-------- 180
Query: 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170
G+R MG + R + + +S +T G F+ P V V NL K
Sbjct: 181 -NGQRLMGAPLQIQRTCAERNRAANSSMASTLG----FVAPGAAKGPA--HVVVENLHPK 233
Query: 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER-- 228
+D K L+ +F G++E +E+ + +G +RGF + F + EA ++ LNN L R
Sbjct: 234 IDAKMLQGIFDAFGRIEKLEMETEHNGDNRGFAVISFKNSEEAQKACEQLNNFELAGRNI 293
Query: 229 RITVRMDRV 237
R++++ D V
Sbjct: 294 RLSIKQDAV 302
>gi|302904116|ref|XP_003049006.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729940|gb|EEU43293.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 474
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 156 CPLINK--VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEA 213
P NK ++V LD +V E LR++F G V+NV+I DK+ + +G VE+D P A
Sbjct: 78 APEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNARGYNYGFVEYDDPGAA 137
Query: 214 VQSISMLNNQNLFERRITV 232
+++ LN + + + I V
Sbjct: 138 ERAMQTLNGRRVHQSEIRV 156
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-KDGKSRGFGTVEFDHPVEAVQSISM 219
+FV +L +V+++ L + F G V + D K G+SRG+G V F +A +++S
Sbjct: 175 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSS 234
Query: 220 LNNQNLFERRI 230
++ + L R I
Sbjct: 235 MDGEWLGSRAI 245
>gi|185177638|pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 19 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 78
Query: 222 NQNLFERRITV 232
L+ R I V
Sbjct: 79 GIRLYGRPINV 89
>gi|330920718|ref|XP_003299119.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
gi|311327336|gb|EFQ92795.1| hypothetical protein PTT_10054 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
++K+F+ L + D++ LR+ F G+VE + D+D G+SRGFG V + EA ++
Sbjct: 1 MSKLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDTEADAAM 60
Query: 218 SMLNNQNLFERRITVRMDRVADR 240
+NN+ RRI R+D+ +DR
Sbjct: 61 QAMNNEEFDGRRI--RVDKASDR 81
>gi|189203945|ref|XP_001938308.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985407|gb|EDU50895.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 168
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSI 217
++K+F+ L + D++ LR+ F G+VE + D+D G+SRGFG V + EA ++
Sbjct: 1 MSKLFIGGLAWHTDDQALRQKFEEFGQVEEAVVVKDRDTGRSRGFGFVRYAQDTEADAAM 60
Query: 218 SMLNNQNLFERRITVRMDRVADR 240
+NN+ RRI R+D+ +DR
Sbjct: 61 QAMNNEEFDGRRI--RVDKASDR 81
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D++G R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLRRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARALEFTNIY---------------------VKNLPVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+++F GK+ +V++ D G SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 AGRAQKRVER 272
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 47/209 (22%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 142 FVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>gi|50553814|ref|XP_504318.1| YALI0E23628p [Yarrowia lipolytica]
gi|49650187|emb|CAG79917.1| YALI0E23628p [Yarrowia lipolytica CLIB122]
Length = 621
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 120/253 (47%), Gaps = 20/253 (7%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G V V ++ D + + RG A VEF+ + V +A+ R G+ L+I+ D
Sbjct: 350 FAEAGPVHDVSLVKDRSSRCRGVAFVEFEDVESVSRAIGLTGR-SLHGQALLIR--CTDS 406
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + + NSS G+T+ ++ + I+ ++++V N+ + V
Sbjct: 407 ARNRE---------EQQSEASFNSSGAGSTHAVANVNASTSAIDSVRFHRLYVGNIYFGV 457
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
E ++ ++F G +E ++ +K GKS+G+ +++ +P +A ++ +N L R++
Sbjct: 458 TEGEIIQIFEAFGPIEFADLQKEKTGKSKGYCFIQYVNPDDAKTALEKMNGFELAGRKLR 517
Query: 232 VRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPL---QDVANWLLQEKVQKLSLIISNRN 288
V + + +R G + + L IG+ L A+G Q + + QKL L RN
Sbjct: 518 VGLG-LGER--GATKARKILTEIGL-LAADGVSRSADQVATQIAVDRQNQKLKL-KDQRN 572
Query: 289 TKEVLERWDFKLQ 301
+ LE+ + +L+
Sbjct: 573 QQRELEQREIELR 585
>gi|296216231|ref|XP_002754472.1| PREDICTED: RNA-binding protein 7 [Callithrix jacchus]
Length = 264
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 40/190 (21%)
Query: 44 ASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103
A L++ + + + +V Y N +T + RG V + + KAV+ HR+E GR L
Sbjct: 144 ARLFEQAGVVEIAEVIY----NRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLT 199
Query: 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF 163
+ N ++ G+ P+ E +++
Sbjct: 200 V----------------------------NKAAPRGSQPERPPRVFEPAF-------RMY 224
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNN 222
V NL + VD +L +VF GKV + D++ G+SRGFG V E +I+ +
Sbjct: 225 VGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDG 284
Query: 223 QNLFERRITV 232
Q L R I V
Sbjct: 285 QTLDGRTIRV 294
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
KVFV NL Y VD ++L +F AG VE E+ +++ +SRGFG V EA +++ M
Sbjct: 128 KVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDM 187
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
+ L R +TV ++ A R P R P
Sbjct: 188 FHRYELDGRLLTV--NKAAPRGSQPERPP 214
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+G VT V + GK +G V ++ + KAV +++ E K ++L + A +
Sbjct: 248 FGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKK- 306
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R S Q S++ + + G+N +FV NLD +
Sbjct: 307 -----------YERIQSLKKQYESTRL-------EKMAKYQGVN------LFVKNLDDSI 342
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KL+E F G + +V++ ++GKS+GFG V F P EA ++I+ N Q
Sbjct: 343 DDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQ 394
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +I D+TGK +G V F+ +A++ ++ G+++ + + K
Sbjct: 155 FSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRK 214
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD + L+ + F N V+V N+D +
Sbjct: 215 ------------ERD--SQLEETKAHFTN---------------------VYVKNIDLET 239
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN-----NQNLF 226
+++ +E F G V +V + DGK +GFG V ++ +AV+++ LN +Q LF
Sbjct: 240 TDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELF 299
Query: 227 ERRITVRMDRV 237
R + +R+
Sbjct: 300 VGRAQKKYERI 310
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL+ +D K L + F + G + + +IA D+ GKS+GFG V F+ A ++I LN
Sbjct: 137 IFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALN 196
Query: 222 NQNLFERRITV 232
L + I V
Sbjct: 197 GMLLNGQEIYV 207
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D++G R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLRRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARALEFTNIY---------------------VKNLPVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+++F GK+ +V++ D G SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 AGRAQKRVER 272
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 47/209 (22%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 142 FVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,381,421,010
Number of Sequences: 23463169
Number of extensions: 417804282
Number of successful extensions: 1698233
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4491
Number of HSP's successfully gapped in prelim test: 13241
Number of HSP's that attempted gapping in prelim test: 1623725
Number of HSP's gapped (non-prelim): 73026
length of query: 587
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 439
effective length of database: 8,886,646,355
effective search space: 3901237749845
effective search space used: 3901237749845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 80 (35.4 bits)