BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1534
(587 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 124 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 183
Query: 115 RNM---GGG--GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + GG GG D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 184 RALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGR-LGSTIFVANLDF 242
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 302
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 303 MHVKMD 308
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMM 572
+ + V+NLP +TWQ+L++KF CG + FAEIK GK G VRFDS +A++A +M
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 582
Query: 573 DRTRIDGKIIDV 584
+ +I G+ IDV
Sbjct: 583 NGIKISGREIDV 594
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV FD P A ++ +
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 581
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 582 MNGIKISGREIDVRLDRNA 600
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 86 DKNSGAGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 144
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 145 VVEFKDEEFVKKALETMNKYDLSGRPLNI 173
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK D +G V F+ A +AI M
Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293
Query: 573 D 573
+
Sbjct: 294 N 294
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1
Length = 591
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+ D GK RG +VEF+ + V+KA+ M++++ GR L IKE + + R
Sbjct: 115 VGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENAR 174
Query: 115 RNM-----GGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDY 169
R + G D+ + L N N + P+ + +L L + +FVANLD+
Sbjct: 175 RALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAG-RLGSTIFVANLDF 233
Query: 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229
KV KKL+EVF +AG V+ +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRP 293
Query: 230 ITVRMD 235
+ V+MD
Sbjct: 294 MHVKMD 299
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP +TWQ+L++KF CG + FAEIK GK G VRF+S +A++A +M+
Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNG 575
Query: 575 TRIDGKIIDV 584
+I G+ IDV
Sbjct: 576 IKISGREIDV 585
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
N++FV NL + + +KL+E F G V EI ++ +GKS+G GTV F+ A ++ +
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRI 572
Query: 220 LNNQNLFERRITVRMDRVA 238
+N + R I VR+DR A
Sbjct: 573 MNGIKISGREIDVRLDRNA 591
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 503 DSNRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIG 555
D N + R+ V + N+P + WQ ++D R G++ + E+ K +G G
Sbjct: 77 DKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRG-CG 135
Query: 556 LVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584
+V F E K+A++ M++ + G+ +++
Sbjct: 136 VVEFKDEEFVKKALETMNKYDLSGRPLNI 164
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMM 572
T+ V NL + W++L++ F G +K A+IK D +G V F+ A +AI M
Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284
Query: 573 D 573
+
Sbjct: 285 N 285
>sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus
GN=Hnrnpm PE=1 SV=4
Length = 690
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 102/184 (55%), Gaps = 35/184 (19%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
R M + + G+T VFVANLDYKV K
Sbjct: 154 RAM---------------QKAGRLGST--------------------VFVANLDYKVGWK 178
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
KL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q LF+R + V+M
Sbjct: 179 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 238
Query: 235 DRVA 238
D A
Sbjct: 239 DERA 242
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 674
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 675 MKLSGREIDV 684
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 614 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 672
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 673 NGMKLSGREIDVRIDRNA 690
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219
+ F+ N+ + V + L+++ + G+V VE+ +D +GKSRG VEF ++ +
Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEV 130
Query: 220 LNNQNLFERRITVRMD 235
LN +L R + V+ D
Sbjct: 131 LNKHSLSGRPLKVKED 146
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
+ G V Y +I + GK +G +V+F+SP++ +A M+ + GR++ ++
Sbjct: 633 FNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 685
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 505 NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLV 557
NR ++ +R + N+P + WQ L+D + G++ + E+ K +G +V
Sbjct: 58 NRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRG-CAVV 116
Query: 558 RFDSEWTAKRAIDMMDRTRIDGKIIDV 584
F E + K+A +++++ + G+ + V
Sbjct: 117 EFKMEESMKKAAEVLNKHSLSGRPLKV 143
>sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM
PE=1 SV=3
Length = 730
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 95 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 154
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLS--PQFLESLGINCPLINK---------VF 163
R M + + A G ++ P L + I +I+ VF
Sbjct: 155 RAM-------QKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 207
Query: 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
VANLDYKV KKL+EVF +AG V +I DKDGKSRG GTV F+ +EAVQ+ISM N Q
Sbjct: 208 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 267
Query: 224 NLFERRITVRMDRVA 238
LF+R + V+MD A
Sbjct: 268 LLFDRPMHVKMDERA 282
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 714
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 715 MKLSGREIDV 724
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 654 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 712
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 713 NGMKLSGREIDVRIDRNA 730
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
+ G V Y +I + GK +G +V+F+SP++ +A M+ + GR++ ++
Sbjct: 673 FNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 725
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 505 NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLV 557
NR ++ +R + N+P + WQ L+D + G++ + E+ K +G +V
Sbjct: 59 NRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRG-CAVV 117
Query: 558 RFDSEWTAKRAIDMMDRTRIDGKIIDV 584
F E + K+A +++++ + G+ + V
Sbjct: 118 EFKMEESMKKAAEVLNKHSLSGRPLKV 144
>sp|Q9D0E1|HNRPM_MOUSE Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm
PE=1 SV=3
Length = 729
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 105/193 (54%), Gaps = 14/193 (7%)
Query: 55 VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGR 114
VG+VTYVE+L D GK RG A+VEF+ + ++KA +++ GR L +KE + + R
Sbjct: 94 VGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHAR 153
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK---------VFVA 165
R M + + P L + I +I+ VFVA
Sbjct: 154 RAM-----QKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVA 208
Query: 166 NLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
NLDYKV KKL+EVF +AG V +I DKDGKSRG G V F+ +EAVQ+ISM N Q L
Sbjct: 209 NLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLL 268
Query: 226 FERRITVRMDRVA 238
F+R + V+MD A
Sbjct: 269 FDRPMHVKMDERA 281
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIK---GKGD-IGLVRFDSEWTAKRAIDMMDR 574
+ V+NLP TW+ L+DKF CG + +A+IK GK G+V+F+S A+RA MM+
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 713
Query: 575 TRIDGKIIDV 584
++ G+ IDV
Sbjct: 714 MKLSGREIDV 723
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
++FV NL + K L++ F G V +I ++ +GKS+G G V+F+ P A ++ M+
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMM 711
Query: 221 NNQNLFERRITVRMDRVA 238
N L R I VR+DR A
Sbjct: 712 NGMKLSGREIDVRIDRNA 729
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105
+ G V Y +I + GK +G +V+F+SP++ +A M+ + GR++ ++
Sbjct: 672 FNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 724
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 505 NRSMNQSSNIERDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEI------KGKGDIGLV 557
NR S+ +R + N+P + WQ L+D + G++ + E+ K +G +V
Sbjct: 58 NRFEPYSNPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRG-CAVV 116
Query: 558 RFDSEWTAKRAIDMMDRTRIDGKIIDV 584
F E + K+A +++++ + G+ + V
Sbjct: 117 EFKMEESMKKAAEVLNKHSLSGRPLKV 143
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ VG+V EILN G +G AI+E+ + + R A+ + + GR + I+E
Sbjct: 97 MGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIRE----- 151
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ +A +FG++ G + ++FV NL Y V
Sbjct: 152 ------------DREQNA-------RFGSSSVSPSASSN--GKDSEPDRQLFVGNLPYNV 190
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+ L+++FR AG V +I ++++G+SRG G V EA+ +I ML+N + R +
Sbjct: 191 RWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLE 250
Query: 232 VRMDRVADRLDGP 244
VR+DR A P
Sbjct: 251 VRLDRFAHHKSKP 263
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 11/207 (5%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK--EAVEDKGG 113
G V +I + G+ RG IV S A+ +H + GR L ++ K
Sbjct: 203 GSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKSK 262
Query: 114 RRNMGGGGGVDRDLSALLQ-NNSSKFGNTYGLSPQFLESLGINC----PLINKVFVANLD 168
+ G G A +Q SS + G + Q +E L + P + ++V NL
Sbjct: 263 PYSTHGNG---YTFPAEMQMTTSSTYLPMLGANTQ-VEDLVYHAYPHGPCSDCIYVGNLP 318
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
+ ++ L ++F G V IA + G+S+GFG V+F++ +A SI LN R
Sbjct: 319 WATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGR 378
Query: 229 RITVRMDRVADRLDGPVRLPEGLKSIG 255
+ + A L + GL S+
Sbjct: 379 PLQLSYAHYATPLPAVPTVLSGLPSVA 405
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220
+V+V NL Y+V +L+E G V N EI +G S+G +E+ EA +I L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 221 NNQNLFERRITVRMDR 236
+NQ R + +R DR
Sbjct: 138 SNQKFMGRLVYIREDR 153
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGD-----IGLVRFDSEWTAKRAIDMMD 573
+ V NLP + WQ+L+D FR G + A+I+ + IG+V S A AI M+
Sbjct: 181 LFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLH 240
Query: 574 RTRIDGKIIDV 584
T G+ ++V
Sbjct: 241 NTDFMGRTLEV 251
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 33/192 (17%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G +T + + D GK +G V F++ + KAV++++ E G+K+ + A + +
Sbjct: 252 FEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKR 311
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVANL 167
L+ ++ NT LE L G+N +F+ NL
Sbjct: 312 -----------------ERLEELKKQYENTR------LEKLSKYQGVN------LFIKNL 342
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227
D +D +KL E F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + ++
Sbjct: 343 DDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYG 402
Query: 228 RRITVRMDRVAD 239
+ + V + + D
Sbjct: 403 KPLYVALAQRKD 414
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 124/300 (41%), Gaps = 63/300 (21%)
Query: 2 TSPVTETELVEQIA----HQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQISHLSTVGD 57
++PV TE EQ A + Q +T A L V + + +A L++I S +G
Sbjct: 20 SAPVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSV-NEALLFEI--FSPIGQ 76
Query: 58 VTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRN 116
V + + D T K G A V F + KA+ ++ +GR I + D RRN
Sbjct: 77 VASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRN 136
Query: 117 MGGGGGVDRDLSALLQNNS-----SKFG---------NTYGLSPQF------------LE 150
G G ++L + N + + FG + G+S F
Sbjct: 137 -GDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAA 195
Query: 151 SLGINCPLIN---------------------------KVFVANLDYKVDEKKLREVFRLA 183
+N L+N V+ N+D E++ +++F
Sbjct: 196 IENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAY 255
Query: 184 GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV-RMDRVADRLD 242
GK+ ++ + D +GKS+GFG V F++ AV+++ LN++ + ++I V R + +RL+
Sbjct: 256 GKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLE 315
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-VEDKGG 113
G+V VE++ D TG+ RG V + + V A + + +E GR + + K
Sbjct: 111 GNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 170
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
+ GGG G + NSS FG G G + N+V+V NL + VD+
Sbjct: 171 NSSFGGGRGGNSSYGGGRDGNSS-FGGARG---------GRSVDSSNRVYVGNLSWGVDD 220
Query: 174 KKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L+E+F G V + ++ D+D G+SRGFG V + E +I LN +L R I V
Sbjct: 221 LALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRV 280
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 146 PQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGT 204
P+F E L K+FV NL + VD L +F AG VE VE+ DK G+SRGFG
Sbjct: 81 PRFSEDL--------KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGF 132
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
V E + N + R I V GP S G G G N
Sbjct: 133 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNA--------GPAPAKRENSSFGGGRGGN 181
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V ++ + KAV +++ E G+K+ + A +
Sbjct: 253 FTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA---Q 309
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R M +L +N + + Y G+N +F+ NLD +
Sbjct: 310 KKRERM-------EELKKQYENTRLEKLSKYQ---------GVN------LFIKNLDDTI 347
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL E F+ G + + + +D+ GKS+GFG V F P EA ++I+ +N + F + +
Sbjct: 348 DSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLY 407
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 408 VALAQRKD 415
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++V N+D + E+ L+++F G + ++ + D +GKS+GFG V ++ AV+++ LN
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELN 294
Query: 222 NQNLFERRITV-RMDRVADRLD 242
++ + ++I V R + +R++
Sbjct: 295 DKEINGQKIYVGRAQKKRERME 316
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
G +T ++ D+TGK +G V F SP+ KA+ +M++ G+ L +
Sbjct: 355 EFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYV 408
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G++T + ++ D KPRG V + + + +KAV++++ E KG+KL + A + K R
Sbjct: 285 GEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA-QKKHER- 342
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ +L + + N Y G+N +F+ NL +VD+++
Sbjct: 343 --------EEELRKRYEQMKLEKMNKYQ---------GVN------LFIKNLQDEVDDER 379
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+ F G + + +I D+ GKS+GFG V + P EA ++++ +N + L + + V +
Sbjct: 380 LKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F GK+ + ++A+D+ G ++G+G V FD A +I +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 230 GMLLNDKKVYV 240
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 149 LESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
+E+L N V++ NLD ++ E++ ++F G++ ++ + D++ K RGFG V +
Sbjct: 253 VEALKAN---FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYA 309
Query: 209 HPVEAVQSISMLNNQNLFERRITV 232
+ A +++ LN++ +++ V
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYV 333
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + + D GK +G V F+ + KAV +++ E G+K+ + A + +
Sbjct: 268 FAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKR 327
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+ + A+ SK+ G+N +FV NLD ++
Sbjct: 328 ERTEEL------KKQYEAVRLEKLSKY-------------QGVN------LFVKNLDEQI 362
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +KL E F+ G + + ++ +D GKS+GFG V F P EA ++I+ +N +
Sbjct: 363 DSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQR 414
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 35/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V++ DD G+ + V +++ + + A+ ++ R++ + + V K
Sbjct: 175 FSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKK 234
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR+ SK LE + N ++V N+D
Sbjct: 235 ------------DRE---------SK-----------LEEMKAN---YTNIYVKNIDLAY 259
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
EK+ E+F GK+ ++ + D +GKS+GFG V F+ A +++ LN++ + ++I
Sbjct: 260 TEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIY 319
Query: 232 V 232
V
Sbjct: 320 V 320
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
G +T +++ DD GK +G V F +P+ KA+ +M++ G+ L +
Sbjct: 370 EFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 423
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
G VT V + D GK RG V F++ + AV +M+ E G+KL + A + K
Sbjct: 259 FKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRA-QKK 317
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + +L L ++ + + Y G+N +FV NLD +
Sbjct: 318 RERLD---------ELKRLYESTRLEKLSKYQ---------GVN------LFVKNLDDSI 353
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D +KL E F+ G + + + +D GKS+GFG V F P EA ++I+ +N + + + +
Sbjct: 354 DSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLY 413
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 414 VALAQRKD 421
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+V NL +VD K E+F+ G V +V + D++GKSRGFG V F++ A+ ++ +N
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 222 NQNLFERRITV-RMDRVADRLDGPVRLPEGLK 252
++ + +++ V R + +RLD RL E +
Sbjct: 301 DKEIDGQKLYVGRAQKKRERLDELKRLYESTR 332
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A L++I S +G V+ + + D T K G A V F +A+ +++ GR
Sbjct: 71 EALLFEI--FSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRP 128
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D RRN G
Sbjct: 129 CRIMWSQRDPSLRRNGDGN----------------------------------------- 147
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F G++ + ++A D+ G+S+ FG V ++ A +I +N
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVN 207
Query: 222 NQNLFERRITV 232
L +R + V
Sbjct: 208 GMLLNDREVFV 218
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 51 HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
G +T ++ DD GK +G V F SP+ KA+ +M++ +G+ L +
Sbjct: 361 EFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 56 GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA-VEDKGG 113
G+V VE++ D +G+ RG V + + V A + + +E GR + + K
Sbjct: 112 GNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 171
Query: 114 RRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDE 173
+ GGG G + NSS FG G G + N+V+V NL + VD+
Sbjct: 172 NSSFGGGRGGNSSYGGGRDGNSS-FGGARG---------GRSVDSSNRVYVGNLSWGVDD 221
Query: 174 KKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232
L+E+F G V + ++ D+D G+SRGFG V + E +I LN +L R I V
Sbjct: 222 LALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV 281
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 146 PQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGT 204
P+F E L K+FV NL + VD L +F AG VE VE+ DK G+SRGFG
Sbjct: 82 PRFSEDL--------KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGF 133
Query: 205 VEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPVRLPEGLKSIGMGLGAN 261
V E + N + R I V GP S G G G N
Sbjct: 134 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNA--------GPAPAKRENSSFGGGRGGN 182
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL + S ++ S G +T + + D GK +G V F+ + KAV +++ E
Sbjct: 240 IDLNYSEESFEKL--FSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
G+K+ + A + + + + A+ +K+ G+N
Sbjct: 298 INGQKIYVGRAQKKRERLEEL------KKQYEAVRLEKLAKY-------------QGVN- 337
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
+FV NLD +D +KL E F+ G + + ++ +D+ GKS+GFG V F P EA ++
Sbjct: 338 -----LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKA 392
Query: 217 ISMLNNQNLFERRITVRMDRVAD 239
I+ +N + + + + V + + D
Sbjct: 393 ITEMNTRMINGKPLYVALAQRKD 415
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 58/255 (22%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A+L++I S +G V+ + + D K G A V + + KA+ +++ +GR
Sbjct: 65 EATLFEI--FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRP 122
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG---------NTYGLSPQ 147
I + D RR+ G G ++L + N + S FG + +G S
Sbjct: 123 CRIMWSQRDPSARRS-GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKC 181
Query: 148 F------------LESLGINCPLIN---------------------------KVFVANLD 168
F +N L+N ++V N+D
Sbjct: 182 FGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNID 241
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228
E+ ++F GK+ ++ + D+DGKS+GFG V F+ AV+++ LN++ + +
Sbjct: 242 LNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQ 301
Query: 229 RITV-RMDRVADRLD 242
+I V R + +RL+
Sbjct: 302 KIYVGRAQKKRERLE 316
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 41/176 (23%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G +T + D GK RG V F+ KAV++++ E KG+KL + A
Sbjct: 243 GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRA-------- 294
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF----LESL----GINCPLINKVFVANL 167
K+ L Q+ LE L G+N +FV NL
Sbjct: 295 -------------------QKKYERLQELKKQYEAARLEKLAKYQGVN------LFVKNL 329
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +D++KL+E F G + + ++ D+ G SRGFG V F P EA ++I+ N Q
Sbjct: 330 DDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQ 385
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ R A+ + +++ + V K
Sbjct: 146 FSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKK 205
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L+ +KF N V+V N+D +
Sbjct: 206 --------------DRQSKLEEVKAKFTN---------------------VYVKNIDQET 230
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
+++ E+F GK+ + + D +GK RGFG V F+ A +++ LN Q L+
Sbjct: 231 SQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLY 290
Query: 227 ERRITVRMDRVAD 239
R + +R+ +
Sbjct: 291 VGRAQKKYERLQE 303
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+++ NL +D K L E F G + + ++A D++G SRGFG V F++ +A +I
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 219 --MLNNQNLFERRITVRMDR 236
++N+Q ++ + DR
Sbjct: 188 GMLMNDQEVYVALHVSKKDR 207
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T +++ D+TG RG V F +P+ KA+ + ++ G+ L + A + K
Sbjct: 342 FAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA-QRK 400
Query: 112 GGRRN 116
RRN
Sbjct: 401 EVRRN 405
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 33/176 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
++ G+ + V + +D GKP G V+++ D+ KA++ + E KG KL A +
Sbjct: 247 VNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKK- 305
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL----GINCPLINKVFVANL 167
+R Q +S+ LE L G+N +++ NL
Sbjct: 306 -----------YERADELRKQYEASR-----------LEKLNKYQGVN------LYIKNL 337
Query: 168 DYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D +D+ KLR F G + + ++ +D+ GKS+GFG V + P EA ++++ +N++
Sbjct: 338 DDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHR 393
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+++ NLD +D K L + F G++ + +IA D+ G SRGFG V ++ A +I +N
Sbjct: 136 IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVN 195
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 196 GMLLNDKKVFV 206
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 41/195 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + +I D+ G RG V ++S + A+ ++ +K+ + V
Sbjct: 154 FSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKS 213
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR S Q NS VF+ NL ++
Sbjct: 214 ------------DRMQSFEEQKNS-----------------------FTNVFIKNLGTEI 238
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----QNLF 226
E + E+ G+ +V ++ + +GK GFG V++ AV++I L+ LF
Sbjct: 239 TEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLF 298
Query: 227 ERRITVRMDRVADRL 241
R + +R AD L
Sbjct: 299 AGRAKKKYER-ADEL 312
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+ + G +T +++ D+ GK +G V + SP+ KAV +M+ G+ L +
Sbjct: 348 AEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYV 402
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D SL ++ S G V+++ D GK +G V ++ + KAV +M+ E G+ +
Sbjct: 204 DESLKEL--FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R L Q S++ G+N +
Sbjct: 262 FVGRA------QKKVERQAELKRKFEQLKQERISRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
++ NLD +D++KLR+ F G + + ++ L+ DG+S+GFG V F P EA ++++ +N
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G A V F++ + KA+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +V
Sbjct: 171 -------GRFKSRKEREAELGAKAKEFTN---------------------VYIKNFGEEV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
D++ L+E+F GK +V++ D +GKS+GFG V ++ +A +++ +N + +F
Sbjct: 203 DDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 227 ERRITVRMDRVAD 239
R +++R A+
Sbjct: 263 VGRAQKKVERQAE 275
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G V + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 IRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L + F G + + ++ D++G S+G+ V F+ A ++I
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 25/188 (13%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G +T + D+ GK +G V F+ + +KAV+++H + KG+KL + A + K
Sbjct: 247 FTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARA-QKK 305
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R + R A +KF G+N +++ N+
Sbjct: 306 SEREEE-----LRRSYEAAKNEKLAKF-------------QGVN------LYLKNIPESY 341
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++LRE F G + + +I G SRGFG V + P EA +++S +N + L R +
Sbjct: 342 DDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLY 401
Query: 232 VRMDRVAD 239
V + + D
Sbjct: 402 VALAQRKD 409
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
V+ N+D +V + + ++F GK+ + + D+DGKS+GFG V F+ EA +++ L+
Sbjct: 229 VYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288
Query: 222 N-----QNLFERRITVRMDR 236
+ Q LF R + +R
Sbjct: 289 DSDFKGQKLFVARAQKKSER 308
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++A ++ G S G+G V ++ A +I +N
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVN 195
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 196 GMLLNDKKVYV 206
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DDTG+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + G + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQGELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 58/260 (22%)
Query: 28 GAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDL 84
G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYE--KFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPAD 64
Query: 85 VRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNS-----SKFG 139
+A++ M+ KGR + I + D G R++ G G ++L + N + S FG
Sbjct: 65 AERALDTMNFEVIKGRPIRIMWSQRDPGLRKS-GVGNVFIKNLDESIDNKALYDTFSAFG 123
Query: 140 NT--------------YGLSPQFLESLG------INCPLIN--KVFVAN--------LDY 169
N YG + +N L+N KVFV + L+Y
Sbjct: 124 NILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY 183
Query: 170 -----------------KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVE 212
+D+K+LRE+F G +V++ +D G+SRGFG V + + E
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEE 243
Query: 213 AVQSISMLNNQNLFERRITV 232
A +++S +N + + R I V
Sbjct: 244 AQKAVSEMNGKEVNGRMIYV 263
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 38/181 (20%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ H S G + ++++DD G +G A V FQ+ +A+ +M+ KG K+ +
Sbjct: 113 TLYE--HFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 169
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
G +N +D A L++ +S+F N Y +
Sbjct: 170 -------GRFKNR-------KDREAELRSKASEFTNVY---------------------I 194
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
N +D+++L++VF GK +V++ D GKS+GFG V FD A +++ +N ++
Sbjct: 195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRD 254
Query: 225 L 225
+
Sbjct: 255 I 255
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G V+++ D +GK +G V F S + +KAV +M+ + G+ + + A
Sbjct: 210 FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA---- 265
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
Q + + Q C + K+++ NLD +
Sbjct: 266 --------------------QKKVERQAELKQMFEQLKRERIRGCQGV-KLYIKNLDDTI 304
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
D++KLR F G + V++ + ++G+S+GFG + F P +A ++++ +N + L
Sbjct: 305 DDEKLRNEFSSFGSISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRIL 357
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
I VF+ NLD +D K L E F GK+ + ++ D G S+G+ V F + A ++I
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIE 155
Query: 219 MLNNQNL-----FERRITVRMDRVAD 239
+N + L F R R DR A+
Sbjct: 156 EMNGKLLKGCKVFVGRFKNRKDREAE 181
>sp|Q80YT9|RBM11_MOUSE Splicing regulator RBM11 OS=Mus musculus GN=Rbm11 PE=1 SV=1
Length = 238
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V + D+DGK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I V+
Sbjct: 72 GIRLYGRPINVQY 84
>sp|P57052|RBM11_HUMAN Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1
Length = 281
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VFV NL+ +V E+ L E+F AG + V I D++GK + FG V F HP +I++LN
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71
Query: 222 NQNLFERRITVRMDRVADRLDGPV 245
L+ R I V+ + R P
Sbjct: 72 GIRLYGRPINVQYRFGSSRSSEPA 95
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A+ KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E+F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 145 SPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFG 203
SP ++ I C +K+F+ + Y +DE LRE F G+V + + LD++ G+SRGFG
Sbjct: 27 SPSLFQA--IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFG 84
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F A +I L+ ++L R + V
Sbjct: 85 FVTFTSSEAASSAIQALDGRDLHGRVVKV 113
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ DD+G+ RG V + + + +KAV++M+ E GR +
Sbjct: 204 DKRLREI--FSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQSELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF---- 173
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR +R+L YG + +E V++ N +
Sbjct: 174 KSRR--------ERELE-------------YGA--KVME--------FTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+K+LRE+F G +V++ +D G+SRGFG V + + EA +++S +N + + R I
Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + A + FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I +N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 43/195 (22%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+D+ D Q+ S G++ + D GKP+G V F + KAV +++ E
Sbjct: 238 IDVETTDEEFEQL--FSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKE 295
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF----LESL 152
K + L + A K+ L Q+ LE L
Sbjct: 296 FKSQALYVGRA---------------------------QKKYERAEELKKQYEQYRLEKL 328
Query: 153 ----GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208
G+N +F+ NLD +D++KL+E F G + + + D++G S+GFG V F
Sbjct: 329 AKFQGVN------LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFS 382
Query: 209 HPVEAVQSISMLNNQ 223
P EA ++++ N Q
Sbjct: 383 SPEEATKAMTEKNQQ 397
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L E F G+V + ++ALD++G SRGFG V F +A +I +N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 40/193 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G+V ++ D+ G RG V F+ + A+ ++ G ++ + V K
Sbjct: 158 FSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK 217
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
D + L+ + F N Y V N+D +
Sbjct: 218 --------------DRISKLEEAKANFTNIY---------------------VKNIDVET 242
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN-----NQNLF 226
+++ ++F G++ + + D +GK +GFG V F A +++ LN +Q L+
Sbjct: 243 TDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALY 302
Query: 227 ERRITVRMDRVAD 239
R + +R +
Sbjct: 303 VGRAQKKYERAEE 315
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102
D L +I S G+ V+++ D++G+ RG V + + + +KAV +M+ E GR +
Sbjct: 204 DKRLKEI--FSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Query: 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162
+ A ++ + G + R + Q +++ G+N +
Sbjct: 262 YVGRA------QKRIERQGELKRKFEQIKQERINRYQ-------------GVN------L 296
Query: 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+V NLD +D+ +LR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSTKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S GD+ +++ D+ G RG V F++ + +A+ M+ RK+ +
Sbjct: 119 FSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF---- 173
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
RR +R+L YG + +E V++ N +
Sbjct: 174 KSRR--------ERELE-------------YGA--KVME--------FTNVYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+K+L+E+F G +V++ +D G+SRGFG V + + EA ++++ +N + + R +
Sbjct: 203 DDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVY 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A + FQ P +A++ M+ KGR
Sbjct: 24 EAMLYE--KFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D G R+ S GN
Sbjct: 82 IRIMWSQRDPGLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++ D+ G SRG+G V F+ A ++I +N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159
Query: 222 NQNLFERRITV 232
L +R++ V
Sbjct: 160 GMLLNDRKVFV 170
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD GK RG V F+ + +KAV+ M+ + G+ + + A + K R+
Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+E F G +V++ D GKSRGFG V F+ +A +++ +N ++L + I
Sbjct: 203 DDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIF 262
Query: 232 V 232
V
Sbjct: 263 V 263
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 50/203 (24%)
Query: 43 DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY+ S G + + + D T + G A V FQ P +A++ M+ KG+
Sbjct: 24 EAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
+ I + D R+ S GN
Sbjct: 82 VRIMWSQRDPSLRK--------------------SGVGN--------------------- 100
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
+F+ NLD +D K L + F G + + ++ D++G S+G+G V F+ A ++I
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 219 --MLNNQNLFERRITVRMDRVAD 239
+LN++ +F R R +R A+
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAE 182
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 86/166 (51%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ D++GK +G V F+ + +KAV++M+ E G+++ + A + K R+
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ ++N ++V NLD +D+++
Sbjct: 274 T-----ELKRTFEQMKQDRITRYQ------------------VVN-LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+S G++ ++ D+ G +G V F++ + +A+ KM+ GRK+ +
Sbjct: 119 VSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GQFKSRKEREAELGARAKEFPN---------------------VYIKNFGEDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
D+++L+++F G +V++ D+ GKS+GFG V F+ +A +++ +N + L ++I
Sbjct: 203 DDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 232 V 232
V
Sbjct: 263 V 263
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
Q A L++ + + +V Y N +T + RG V S D AV K +R++ GR
Sbjct: 164 QALAMLFEQAGTVEIAEVIY----NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 219
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + N ++ G+ +P+ E P
Sbjct: 220 LLTV----------------------------NKAAPRGSRPERAPRVYE------PAF- 244
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+V+V NL + VD +L ++F GKV + D++ G+SRGFG V E ++IS
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 220 LNNQNLFERRITV 232
L+ QNL R I V
Sbjct: 305 LDGQNLEGRAIRV 317
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y V+ + L +F AG VE E+ +++ +SRGFG V EA ++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLP 248
N +L R +TV ++ A R P R P
Sbjct: 211 FNRYDLNGRLLTV--NKAAPRGSRPERAP 237
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 26/166 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
G V+++ DD GK +G V F+ + +KAV++M+ + G+ + + A + K R+
Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA-QKKVERQ 273
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R + Q+ +++ G+N ++V NLD +D+++
Sbjct: 274 T-----ELKRKFEQMKQDRITRYQ-------------GVN------LYVKNLDDGIDDER 309
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
LR+ F G + + ++ ++ G+S+GFG V F P EA ++++ +N
Sbjct: 310 LRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 30 PLEVPVVMDLIQG--DASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVR 86
P+ V DL Q +A LY+ S G + + + D T + G A V FQ P
Sbjct: 9 PMASLYVGDLHQDVTEAMLYE--KFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 87 KAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSP 146
+A++ M+ KGR + I + D R+ S GN
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRK--------------------SGVGN------ 100
Query: 147 QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVE 206
+F+ NLD +D K L + F G + + ++ D++G S+G+G V
Sbjct: 101 ---------------IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVH 144
Query: 207 FDHPVEAVQSIS-----MLNNQNLFERRITVRMDRVAD 239
F+ A ++I +LN++ +F R R +R A+
Sbjct: 145 FETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ +++ D+ G +G V F++ + +A++KM+ RK+ +
Sbjct: 119 FSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G ++ A L + +F N V++ N +
Sbjct: 171 -------GRFKSRKEREAELGARAKEFTN---------------------VYIKNFGDDM 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225
++++L+E+F G +V++ D +GKS+GFG V F+ +A +++ +N +++
Sbjct: 203 NDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
>sp|Q9CQT2|RBM7_MOUSE RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1
Length = 265
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
LF R I ++
Sbjct: 72 GIKLFGRPIKIQF 84
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL DA + + G V + D+ G +G V +++ + RKAV++++ E
Sbjct: 234 VDLEVTDAEFEDL--VKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKE 291
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
G+KL A +R+ + + N +S G+N
Sbjct: 292 VNGKKLYAGRAQTKS------------EREAELKKSHEEKRLENE-------AKSAGVN- 331
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
++V NLD + D+ +LR F G + + ++ D G SRGFG V + P EA ++
Sbjct: 332 -----LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKA 386
Query: 217 ISMLNNQNLFERRITVRMDRVAD 239
+S +N + + + + V + + D
Sbjct: 387 VSEMNGKMIGTKPLYVALAQRKD 409
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ D++GKSRGF V + A +I +N
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 196 GMLLNDKKVYV 206
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 46/196 (23%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEF---QSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ GD+ ++ D+ GK RG A V + ++ D KAVN M
Sbjct: 154 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGM---------------- 197
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
LL + G+ G + + + N V++ N+D
Sbjct: 198 ---------------------LLNDKKVYVGHHVGKKERLSKVEELRAQFTN-VYIKNVD 235
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----Q 223
+V + + ++ + G +V ++ D+ G S+GFG V +++ A +++ LN +
Sbjct: 236 LEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGK 295
Query: 224 NLFERRITVRMDRVAD 239
L+ R + +R A+
Sbjct: 296 KLYAGRAQTKSEREAE 311
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 37 MDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96
+DL DA + + G V + D+ G +G V +++ + RKAV++++ E
Sbjct: 234 VDLEVTDAEFEDL--VKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKE 291
Query: 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINC 156
G+KL A +R+ + + N +S G+N
Sbjct: 292 VNGKKLYAGRAQTKS------------EREAELKKSHEEKRLENE-------AKSAGVN- 331
Query: 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQS 216
++V NLD + D+ +LR F G + + ++ D G SRGFG V + P EA ++
Sbjct: 332 -----LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKA 386
Query: 217 ISMLNNQNLFERRITVRMDRVAD 239
+S +N + + + + V + + D
Sbjct: 387 VSEMNGKMIGTKPLYVALAQRKD 409
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NLD +D K L + F G + + ++ D++GKSRGF V + A +I +N
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 222 NQNLFERRITV 232
L ++++ V
Sbjct: 196 GMLLNDKKVYV 206
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 46/196 (23%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEF---QSPDLVRKAVNKMHRFETKGRKLVIKEAV 108
+ GD+ ++ D+ GK RG A V + ++ D KAVN M
Sbjct: 154 FAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGM---------------- 197
Query: 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD 168
LL + G+ G + + + N V++ N+D
Sbjct: 198 ---------------------LLNDKKVYVGHHVGKKERLSKVEELRAQFTN-VYIKNVD 235
Query: 169 YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-----Q 223
+V + + ++ + G +V ++ D+ G S+GFG V +++ A +++ LN +
Sbjct: 236 LEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGK 295
Query: 224 NLFERRITVRMDRVAD 239
L+ R + +R A+
Sbjct: 296 KLYAGRAQTKSEREAE 311
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+G A L++ + + + +V Y N DT + RG V + + KAV +R++ GR
Sbjct: 150 EGLARLFEQAGVVEIAEVIY----NRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGR 205
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + +A + G R + F +Y
Sbjct: 206 LLTVNKAA--RRGERP---------------ERPPRTFEQSY------------------ 230
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V N+ + +D+ +L ++F GKV + + D++ G+SRGFG V E +I+
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 220 LNNQNLFERRITVRMDRVADR 240
L+ Q+L R T+R++ DR
Sbjct: 291 LDGQSLDGR--TIRVNVAEDR 309
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG-KSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y VD + L +F AG VE E+ ++D +SRGFG V EA +++ M
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
N ++ R +TV ++ A R + P R P +
Sbjct: 197 YNRYDVNGRLLTV--NKAARRGERPERPPRTFE 227
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML 220
V+V N+ Y++ E+++ ++F+ +G V++ ++ +D + G+ +G+G E+ P A ++ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 221 NNQNLFERRITVRMD-----RVADRLDGPVRL 247
NN + RR+ V R D+L GP R
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRY 98
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G++ ++ D+ G +G V F++ + +++K++ G+K+ + + + K
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+R+ + LG L V+V N
Sbjct: 170 ------------ERE-----------------------KELGEKAKLFTNVYVKNFTEDF 194
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-- 229
D++KL+E F GK+ + ++ +DGKS+GFG V F+ A ++ LN +++ E +
Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 254
Query: 230 ITVRMDRVADRLDGPVRLPEGLK 252
R + A+R R E LK
Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-KGRKLVIKEAVEDKGGR 114
G +T ++++ + GK +G V F++ + AV ++ + +G+ L + A + K R
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA-QKKAER 265
Query: 115 RNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEK 174
+ + R L Q G+N ++V NLD +D+
Sbjct: 266 QQ-----ELKRKFEELKQKRHESV-------------FGVN------LYVKNLDDTIDDD 301
Query: 175 KLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+LR F G + + ++ D++G+S+GFG V F+ EA +++ LN
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS 218
+ VF+ NLD +D K + + F G + + ++A D+ G S+G+G V F+ A SI
Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSID 148
Query: 219 MLNNQNLFERRITV 232
+N L +++ V
Sbjct: 149 KVNGMLLNGKKVYV 162
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVE 212
I C +K+FV + Y DE LRE F G+V + +I +D++ G+SRGF V F E
Sbjct: 28 IRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEE 87
Query: 213 AVQSISMLNNQNLFERRITV 232
A ++ L+ Q+L RRI V
Sbjct: 88 ASNAM-QLDGQDLHGRRIRV 106
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 26/170 (15%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S G + V+++ D++G R V F+ + +KAV M+ E GR L A + +
Sbjct: 211 FSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-QKR 269
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R+N + R + Q+ ++ G+N ++V NLD +
Sbjct: 270 VERQN-----ELKRRFEQMKQDRLRRYQ-------------GVN------LYVKNLDDSI 305
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
D+ KLR+ F G + + ++ + + G S+GFG V F P EA ++++ +N
Sbjct: 306 DDDKLRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 41/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
ST G++ ++ D+ G RG V F++ + ++A+N M+ RK+ +
Sbjct: 119 FSTFGNILSCKVACDEHGS-RGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV------- 170
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
G R+ A L + +F N Y V NL V
Sbjct: 171 -------GHFKSRREREAELGARALEFTNIY---------------------VKNLPVDV 202
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-----LF 226
DE+ L+++F GK+ +V++ D G SR FG V F+ EA +++ +N + L+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
Query: 227 ERRITVRMDR 236
R R++R
Sbjct: 263 AGRAQKRVER 272
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 47/209 (22%)
Query: 27 TGAPLEVPVVMDLIQ--GDASLYQISHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPD 83
+G PL V DL +A LY+ S G + + + D T + G A + FQ P
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYE--KFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 84 LVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG 143
+A++ M+ KG+ + I + D G R+ S GN
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--------------------SGVGN--- 100
Query: 144 LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFG 203
+F+ NL+ +D K L + F G + + ++A D+ G SRGFG
Sbjct: 101 ------------------IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFG 141
Query: 204 TVEFDHPVEAVQSISMLNNQNLFERRITV 232
V F+ A Q+I+ +N L +R++ V
Sbjct: 142 FVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 40/193 (20%)
Query: 41 QGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR 100
+G A L+Q + + + +V Y N +T + RG V + + KAV +++ GR
Sbjct: 111 EGLAQLFQQAGVVEIAEVIY----NRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGR 166
Query: 101 KLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160
L + +A +G R + F TY
Sbjct: 167 LLTVNKAAP-RGSRP----------------ERAPRTFQPTY------------------ 191
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
+++V N+ + +D+ +L +VF GKV + + D++ G+SRGFG V E ++I+
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 220 LNNQNLFERRITV 232
L+ Q L R I V
Sbjct: 252 LDGQTLDGRTIRV 264
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219
K+FV NL Y +D + L ++F+ AG VE E+ +++ +SRGFG V EA +++ +
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query: 220 LNNQNLFERRITVRMDRVADRLDGPVRLPEGLK 252
+ +L R +TV ++ A R P R P +
Sbjct: 158 YSQYDLNGRLLTV--NKAAPRGSRPERAPRTFQ 188
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+FV NL+ KV E+ L E+F AG V V+I DKDGK + F V F H V ++++LN
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 222 NQNLFERRITVRM 234
L+ R I ++
Sbjct: 72 GIKLYGRPIKIQF 84
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G + + D GK +G V ++ + KAV ++ E G KL + A + K
Sbjct: 239 FAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA-QKK 297
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
R ++ + + A +K+ G+N +FV NLD V
Sbjct: 298 NERMHV-----LKKQYEAYRLEKMAKYQ-------------GVN------LFVKNLDDSV 333
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223
D++KL E F G + + ++ ++GKS+GFG V F P EA ++I+ N Q
Sbjct: 334 DDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQ 385
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 44/191 (23%)
Query: 43 DASLYQISHLSTVGDVTYVEILNDDTGKPR-GSAIVEFQSPDLVRKAVNKMHRFETKGRK 101
+A LY I S +G V+ + + D K G A V F + RKA+ +++ KGR
Sbjct: 51 EAHLYDI--FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRL 108
Query: 102 LVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINK 161
I + D R+ G
Sbjct: 109 CRIMWSQRDPSLRKKGSGN----------------------------------------- 127
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
+F+ NL +D K L + F + G + + +IA D++GKS+GFG V F+ A ++I LN
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 222 NQNLFERRITV 232
L + I V
Sbjct: 188 GMLLNGQEIYV 198
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 84/191 (43%), Gaps = 36/191 (18%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
S GD+ +I D+ GK +G V F+ ++A++ ++ G+++ + + K
Sbjct: 146 FSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRK 205
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
+RD + L+ + + N Y V N++ +
Sbjct: 206 ------------ERD--SQLEETKAHYTNLY---------------------VKNINSET 230
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231
+++ +E+F G + + + D DGK +GFG V ++ +AV+++ LN+ L ++
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLY 290
Query: 232 V-RMDRVADRL 241
V R + +R+
Sbjct: 291 VGRAQKKNERM 301
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 519 VVVKNLPPTITWQELRDKFRNCGDIKFAEI------KGKGDIGLVRFDSEWTAKRAIDMM 572
+ +KNL P I + L D F GDI ++I K KG G V F+ E AK AID +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKG-FGFVHFEEEGAAKEAIDAL 186
Query: 573 DRTRIDGKIIDVT 585
+ ++G+ I V
Sbjct: 187 NGMLLNGQEIYVA 199
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221
VF+ NLD +D K L + F G + + ++A D++G S+G+G V ++ A Q+I +N
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVN 214
Query: 222 NQNLFERRITV 232
N L E+++ V
Sbjct: 215 NMLLNEKKVYV 225
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 40/190 (21%)
Query: 52 LSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111
+ G++ ++ D+ G +G V +++ + +A+ ++ +K+ + + K
Sbjct: 173 FAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKK 232
Query: 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKV 171
DR SKF E + N ++V N+ +
Sbjct: 233 ------------DR---------QSKF-----------EEMKAN---FTNIYVKNISLEA 257
Query: 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN-----NQNLF 226
+++ R++F G V + +A D +GKSRGFG V F A +++ LN Q+L+
Sbjct: 258 TDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLY 317
Query: 227 ERRITVRMDR 236
R + +R
Sbjct: 318 VGRAQKKHER 327
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 25/179 (13%)
Query: 56 GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRR 115
GD++ ++ D +G R V F SP+ AV KM+ L + A + K R
Sbjct: 263 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA-QKKSDRE 321
Query: 116 NMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKK 175
+ R Q S+F G + +++ NLD V+++K
Sbjct: 322 E-----ELRRKFE---QERISRFEKLQG----------------SNLYLKNLDDSVNDEK 357
Query: 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234
L+E+F G V + ++ ++ G SRGFG V + +P EA+ ++ +N + + + + V +
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSIS--- 218
VF+ NLD +D K L E F G + + ++A+D G+S+G+G V+F+ A +I
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 219 --MLNNQNLFERRITVRMDR 236
+LN++ +F R DR
Sbjct: 208 GMLLNDKQVFVGHFVRRQDR 227
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 38/197 (19%)
Query: 45 SLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104
+LY+ S+ G + ++ D G+ +G V+F+ + + A++K++ +++ +
Sbjct: 161 ALYET--FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 218
Query: 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFV 164
V + R+ G P V+V
Sbjct: 219 GHFVRRQDRARSESGA-----------------------------------VPSFTNVYV 243
Query: 165 ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224
NL ++ + +L++ F G + + + D+ G SR FG V F P A ++ +N +
Sbjct: 244 KNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGIS 303
Query: 225 LFERRITV-RMDRVADR 240
L E + V R + +DR
Sbjct: 304 LGEDVLYVGRAQKKSDR 320
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDKDGKSRGFGTVEFDHPV 211
G+N + +FV NLD VDE+ L + F G+ V+ ++A D++G+S+G+G V +D
Sbjct: 92 GVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFE 151
Query: 212 EAVQSISMLNNQNLFERRITV 232
A +I +NNQ L + ITV
Sbjct: 152 TADAAIEAMNNQFLMNKPITV 172
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSR-GFGTVEFDHPVEAVQSISML 220
+++ NLD KV + L E+ AG V N+ I D+ S GFG EF H + + +L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 221 NNQNLFERRITV 232
N LF + I V
Sbjct: 73 NQVKLFGKPIRV 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,258,334
Number of Sequences: 539616
Number of extensions: 9957754
Number of successful extensions: 42836
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 924
Number of HSP's that attempted gapping in prelim test: 37528
Number of HSP's gapped (non-prelim): 5179
length of query: 587
length of database: 191,569,459
effective HSP length: 123
effective length of query: 464
effective length of database: 125,196,691
effective search space: 58091264624
effective search space used: 58091264624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)