Query psy1534
Match_columns 587
No_of_seqs 472 out of 3581
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:26:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 9.4E-45 2E-49 399.7 36.8 346 34-586 2-360 (562)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-43 4.8E-48 367.5 36.8 166 31-239 2-172 (352)
3 KOG4212|consensus 100.0 1.7E-39 3.6E-44 316.5 36.1 242 33-275 45-330 (608)
4 KOG0144|consensus 100.0 1.4E-40 3.1E-45 324.4 27.8 172 28-241 30-209 (510)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.1E-39 6.7E-44 347.1 39.1 167 32-237 2-173 (481)
6 KOG0117|consensus 100.0 3.5E-39 7.5E-44 316.4 25.9 162 29-239 80-249 (506)
7 KOG0145|consensus 100.0 6.5E-39 1.4E-43 293.2 25.6 168 29-239 38-210 (360)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 8.2E-38 1.8E-42 332.7 29.9 160 30-238 56-222 (578)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.1E-35 2.5E-40 320.2 38.4 175 31-237 88-265 (457)
10 TIGR01645 half-pint poly-U bin 100.0 9E-35 2E-39 309.6 37.6 178 30-239 105-285 (612)
11 KOG0127|consensus 100.0 5.4E-35 1.2E-39 292.8 27.8 193 32-241 5-199 (678)
12 KOG0123|consensus 100.0 5.1E-33 1.1E-37 283.9 27.8 331 34-585 3-344 (369)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.1E-32 4.5E-37 299.0 33.5 190 30-239 173-376 (509)
14 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-32 3.2E-37 302.9 27.0 285 2-350 50-362 (562)
15 KOG0148|consensus 100.0 7.5E-33 1.6E-37 255.4 19.6 139 29-239 3-143 (321)
16 TIGR01659 sex-lethal sex-letha 100.0 2E-32 4.2E-37 278.4 23.3 171 27-240 102-277 (346)
17 KOG0148|consensus 100.0 3.2E-30 6.9E-35 238.1 18.3 177 32-240 62-240 (321)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.7E-28 8E-33 253.0 25.0 237 3-239 54-350 (352)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.3E-27 7.1E-32 254.0 30.5 279 34-342 98-465 (481)
20 TIGR01659 sex-lethal sex-letha 99.9 9E-27 2E-31 237.0 21.4 82 155-236 103-185 (346)
21 KOG0124|consensus 99.9 3.1E-26 6.6E-31 219.3 23.0 176 31-238 112-290 (544)
22 KOG0147|consensus 99.9 9.1E-27 2E-31 235.8 17.0 179 31-239 178-359 (549)
23 KOG0131|consensus 99.9 4.2E-27 9.1E-32 205.6 11.7 170 30-241 7-180 (203)
24 TIGR01648 hnRNP-R-Q heterogene 99.9 2.3E-25 5E-30 237.7 22.9 194 2-240 107-309 (578)
25 KOG0123|consensus 99.9 3.3E-25 7.2E-30 226.6 22.1 282 1-344 44-342 (369)
26 KOG0105|consensus 99.9 3E-25 6.5E-30 193.8 18.5 78 158-237 5-82 (241)
27 KOG0117|consensus 99.9 7.7E-24 1.7E-28 208.7 29.3 190 7-241 138-334 (506)
28 KOG0146|consensus 99.9 7.3E-26 1.6E-30 208.4 12.8 81 506-586 275-361 (371)
29 KOG0110|consensus 99.9 9.9E-25 2.1E-29 226.7 20.4 200 31-236 384-596 (725)
30 TIGR01645 half-pint poly-U bin 99.9 1.1E-24 2.3E-29 232.7 21.3 78 157-234 105-183 (612)
31 KOG4211|consensus 99.9 1.8E-23 3.9E-28 209.1 27.3 172 27-235 5-179 (510)
32 KOG0109|consensus 99.9 4.3E-25 9.2E-30 206.2 11.5 151 32-241 2-153 (346)
33 KOG0145|consensus 99.9 4.6E-24 1E-28 195.9 16.4 235 3-238 92-358 (360)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-23 2.7E-28 229.8 22.9 191 31-237 294-501 (509)
35 KOG0127|consensus 99.9 2.1E-23 4.5E-28 209.9 19.2 208 32-239 117-379 (678)
36 KOG0146|consensus 99.9 1.2E-23 2.7E-28 193.8 9.8 209 31-239 18-366 (371)
37 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-21 2.8E-26 211.0 23.9 205 31-238 185-448 (457)
38 KOG0144|consensus 99.9 2.6E-22 5.7E-27 196.9 13.2 210 30-239 122-505 (510)
39 KOG0110|consensus 99.9 6.4E-22 1.4E-26 205.9 13.0 175 31-239 514-694 (725)
40 KOG4205|consensus 99.9 1E-21 2.3E-26 193.6 12.2 175 31-244 5-182 (311)
41 KOG0109|consensus 99.8 6.1E-21 1.3E-25 178.5 12.0 68 517-586 79-146 (346)
42 KOG0105|consensus 99.8 2E-19 4.2E-24 157.6 16.3 174 31-234 5-186 (241)
43 KOG1190|consensus 99.8 1.1E-18 2.4E-23 170.4 22.1 198 28-238 24-226 (492)
44 KOG0131|consensus 99.8 2.1E-19 4.5E-24 157.6 12.1 79 158-236 8-87 (203)
45 KOG4211|consensus 99.8 1.7E-17 3.7E-22 166.6 23.1 149 158-333 9-165 (510)
46 KOG1190|consensus 99.8 1E-16 2.2E-21 156.9 24.9 195 34-239 152-374 (492)
47 KOG0124|consensus 99.8 2.1E-18 4.6E-23 165.7 12.6 75 159-233 113-188 (544)
48 KOG0147|consensus 99.8 3.7E-18 8.1E-23 173.6 14.3 199 34-236 280-526 (549)
49 KOG4206|consensus 99.7 9.6E-17 2.1E-21 146.9 16.8 194 34-236 11-220 (221)
50 PLN03134 glycine-rich RNA-bind 99.7 3.8E-17 8.3E-22 145.8 13.6 93 20-112 22-116 (144)
51 KOG4307|consensus 99.7 1E-15 2.3E-20 158.4 21.3 182 31-229 433-622 (944)
52 KOG1456|consensus 99.7 1.2E-14 2.6E-19 140.7 27.0 165 30-239 29-200 (494)
53 KOG1548|consensus 99.7 6.3E-16 1.4E-20 148.6 18.0 199 33-240 135-354 (382)
54 PLN03134 glycine-rich RNA-bind 99.7 6.8E-16 1.5E-20 137.8 15.6 85 156-240 31-116 (144)
55 KOG4212|consensus 99.7 7.5E-16 1.6E-20 151.7 16.1 82 159-240 44-126 (608)
56 KOG0106|consensus 99.7 1.2E-16 2.5E-21 148.1 9.4 69 515-585 98-166 (216)
57 KOG0106|consensus 99.7 2.6E-16 5.7E-21 145.8 8.3 165 33-234 2-167 (216)
58 KOG1456|consensus 99.6 1E-12 2.2E-17 127.4 29.1 201 30-238 117-363 (494)
59 KOG4205|consensus 99.6 2.7E-15 5.9E-20 148.3 10.1 81 158-239 5-86 (311)
60 PF00076 RRM_1: RNA recognitio 99.6 5.4E-15 1.2E-19 115.4 9.0 69 35-103 1-70 (70)
61 KOG1457|consensus 99.6 3.5E-14 7.6E-19 128.5 15.3 193 31-226 33-274 (284)
62 KOG1365|consensus 99.6 8.4E-15 1.8E-19 142.2 11.7 167 35-230 63-235 (508)
63 KOG0120|consensus 99.6 5.9E-14 1.3E-18 145.4 15.8 184 31-240 174-371 (500)
64 KOG0120|consensus 99.5 2.1E-14 4.6E-19 148.6 11.6 197 20-237 277-491 (500)
65 KOG0125|consensus 99.5 1E-14 2.2E-19 139.3 8.1 80 29-109 93-173 (376)
66 PF00076 RRM_1: RNA recognitio 99.5 3.7E-14 8E-19 110.7 10.0 70 162-231 1-70 (70)
67 PF14259 RRM_6: RNA recognitio 99.5 1E-13 2.2E-18 108.3 10.0 69 35-103 1-70 (70)
68 KOG0107|consensus 99.5 3E-14 6.4E-19 124.6 7.3 75 30-108 8-83 (195)
69 KOG4206|consensus 99.5 1.6E-12 3.4E-17 119.4 18.9 80 158-239 8-91 (221)
70 KOG0149|consensus 99.5 1.9E-14 4.1E-19 132.1 6.2 78 30-108 10-89 (247)
71 KOG1457|consensus 99.5 8.4E-13 1.8E-17 119.7 16.2 88 158-245 33-125 (284)
72 KOG0126|consensus 99.5 7.6E-15 1.6E-19 128.8 2.5 105 4-108 3-113 (219)
73 KOG0122|consensus 99.5 1.3E-13 2.9E-18 126.9 8.7 80 31-110 188-269 (270)
74 COG0724 RNA-binding proteins ( 99.5 4E-13 8.7E-18 134.6 13.1 167 32-217 115-284 (306)
75 KOG0107|consensus 99.5 1.6E-13 3.5E-18 120.1 8.7 79 158-240 9-87 (195)
76 KOG0125|consensus 99.5 2E-13 4.4E-18 130.6 9.8 82 158-240 95-176 (376)
77 KOG0122|consensus 99.5 2.2E-13 4.8E-18 125.5 9.6 81 158-238 188-269 (270)
78 KOG0121|consensus 99.5 1E-13 2.3E-18 114.7 6.1 80 29-108 33-114 (153)
79 PF14259 RRM_6: RNA recognitio 99.4 5.1E-13 1.1E-17 104.3 9.6 70 162-231 1-70 (70)
80 KOG0149|consensus 99.4 2.3E-13 5E-18 125.0 8.2 79 159-238 12-91 (247)
81 PLN03120 nucleic acid binding 99.4 4.4E-13 9.6E-18 127.8 10.0 75 31-108 3-78 (260)
82 KOG0121|consensus 99.4 3.2E-13 7E-18 111.8 7.5 81 157-237 34-115 (153)
83 KOG1548|consensus 99.4 1.7E-11 3.6E-16 118.5 20.2 83 158-240 133-223 (382)
84 PLN03120 nucleic acid binding 99.4 1.1E-12 2.4E-17 125.1 11.5 78 159-239 4-81 (260)
85 KOG4207|consensus 99.4 2.3E-13 5E-18 121.9 5.8 79 30-108 11-91 (256)
86 PLN03213 repressor of silencin 99.4 1.4E-12 3E-17 130.7 9.3 78 28-108 6-86 (759)
87 KOG0113|consensus 99.4 1.4E-12 3E-17 123.5 8.5 78 31-108 100-179 (335)
88 PLN03121 nucleic acid binding 99.4 3E-12 6.4E-17 120.1 9.9 76 30-108 3-79 (243)
89 KOG0130|consensus 99.4 8.3E-13 1.8E-17 110.3 5.4 75 34-108 74-150 (170)
90 smart00362 RRM_2 RNA recogniti 99.4 4.1E-12 8.8E-17 98.9 9.1 71 34-105 1-72 (72)
91 KOG0114|consensus 99.3 3.7E-12 8E-17 101.5 8.4 80 29-110 15-95 (124)
92 KOG4207|consensus 99.3 3.3E-12 7.3E-17 114.5 9.1 82 159-240 13-95 (256)
93 KOG0113|consensus 99.3 6.7E-12 1.5E-16 118.9 11.6 95 155-252 97-192 (335)
94 KOG0114|consensus 99.3 8.6E-12 1.9E-16 99.5 8.8 71 517-587 19-92 (124)
95 PLN03121 nucleic acid binding 99.3 1.1E-11 2.5E-16 116.1 10.9 76 159-237 5-80 (243)
96 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.9E-16 96.0 9.7 72 161-233 1-72 (72)
97 PLN03213 repressor of silencin 99.3 8E-12 1.7E-16 125.3 10.3 78 158-238 9-88 (759)
98 KOG4454|consensus 99.3 3E-13 6.6E-18 122.3 0.1 145 28-229 5-154 (267)
99 KOG1365|consensus 99.3 3.5E-12 7.6E-17 124.2 6.5 188 35-237 164-361 (508)
100 KOG0108|consensus 99.3 4.6E-12 1E-16 131.0 7.6 77 33-109 19-97 (435)
101 smart00360 RRM RNA recognition 99.3 1.3E-11 2.9E-16 95.6 8.1 69 37-105 1-71 (71)
102 KOG0111|consensus 99.3 2.9E-12 6.3E-17 115.8 4.7 83 30-112 8-92 (298)
103 KOG0111|consensus 99.3 3.5E-12 7.6E-17 115.3 4.9 86 158-243 9-95 (298)
104 cd00590 RRM RRM (RNA recogniti 99.2 4.9E-11 1.1E-15 93.3 9.9 73 34-106 1-74 (74)
105 KOG0126|consensus 99.2 1.1E-12 2.4E-17 115.3 0.2 79 159-237 35-114 (219)
106 smart00360 RRM RNA recognition 99.2 5.2E-11 1.1E-15 92.2 8.8 70 164-233 1-71 (71)
107 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.4E-15 91.3 10.5 74 161-234 1-74 (74)
108 KOG0130|consensus 99.2 2.9E-11 6.2E-16 101.2 7.3 81 159-239 72-153 (170)
109 PF13893 RRM_5: RNA recognitio 99.2 5.9E-11 1.3E-15 88.1 7.7 54 50-107 3-56 (56)
110 smart00361 RRM_1 RNA recogniti 99.2 7.8E-11 1.7E-15 91.7 7.8 59 46-104 2-69 (70)
111 KOG0108|consensus 99.2 4E-11 8.7E-16 124.0 7.9 82 160-241 19-101 (435)
112 KOG0129|consensus 99.2 6E-10 1.3E-14 113.7 15.3 171 25-219 252-432 (520)
113 PF13893 RRM_5: RNA recognitio 99.1 3.2E-10 6.9E-15 84.1 8.1 56 176-235 1-56 (56)
114 COG0724 RNA-binding proteins ( 99.1 3.7E-10 8E-15 113.0 10.6 79 159-237 115-194 (306)
115 smart00361 RRM_1 RNA recogniti 99.1 7.6E-10 1.6E-14 86.1 8.6 60 173-232 2-69 (70)
116 KOG4208|consensus 99.0 6.4E-10 1.4E-14 100.6 8.0 86 25-110 42-130 (214)
117 KOG0128|consensus 99.0 9.4E-11 2E-15 125.6 -0.7 146 33-238 668-815 (881)
118 KOG0415|consensus 98.9 2.4E-09 5.2E-14 103.6 7.6 82 27-108 234-317 (479)
119 KOG0415|consensus 98.9 2.7E-09 5.8E-14 103.3 7.2 85 155-239 235-320 (479)
120 KOG0226|consensus 98.9 1E-09 2.2E-14 102.1 3.8 169 34-239 98-271 (290)
121 KOG4210|consensus 98.8 5.4E-09 1.2E-13 103.6 6.8 176 31-240 87-266 (285)
122 KOG0132|consensus 98.8 1.6E-08 3.5E-13 107.5 7.9 79 158-241 420-498 (894)
123 KOG4307|consensus 98.7 3.1E-06 6.7E-11 89.2 23.3 194 33-235 310-511 (944)
124 KOG4661|consensus 98.7 2.8E-08 6.2E-13 101.7 8.2 80 30-109 403-484 (940)
125 KOG0153|consensus 98.7 4.6E-08 9.9E-13 95.1 8.7 78 155-237 224-302 (377)
126 KOG0132|consensus 98.7 2.7E-08 5.7E-13 105.8 7.5 75 512-586 417-491 (894)
127 KOG0533|consensus 98.7 3.7E-08 8.1E-13 94.0 7.6 81 30-110 81-162 (243)
128 KOG0153|consensus 98.7 4.6E-08 1E-12 95.1 8.1 76 511-586 223-299 (377)
129 KOG4208|consensus 98.7 5.9E-08 1.3E-12 88.0 8.1 83 156-238 46-130 (214)
130 KOG0128|consensus 98.6 1.3E-09 2.8E-14 117.1 -4.2 157 29-219 568-728 (881)
131 KOG0533|consensus 98.6 1.2E-07 2.6E-12 90.6 9.5 83 157-239 81-163 (243)
132 KOG0112|consensus 98.6 3.8E-08 8.3E-13 106.4 4.8 161 30-240 370-533 (975)
133 KOG4661|consensus 98.6 1.6E-07 3.6E-12 96.2 8.0 82 157-238 403-485 (940)
134 KOG0129|consensus 98.5 2.8E-06 6E-11 87.4 14.3 56 516-571 370-432 (520)
135 KOG0151|consensus 98.5 6.1E-07 1.3E-11 94.7 9.2 87 155-241 170-260 (877)
136 KOG4454|consensus 98.4 7.9E-08 1.7E-12 87.6 2.2 77 158-235 8-84 (267)
137 KOG0226|consensus 98.4 1.2E-07 2.7E-12 88.4 3.3 78 31-108 189-268 (290)
138 KOG4209|consensus 98.4 5E-07 1.1E-11 86.7 6.4 80 28-108 97-178 (231)
139 KOG0116|consensus 98.4 4.9E-07 1.1E-11 93.4 6.3 74 34-108 290-365 (419)
140 KOG0116|consensus 98.4 1.6E-06 3.5E-11 89.6 9.7 82 159-241 288-370 (419)
141 PF08777 RRM_3: RNA binding mo 98.3 1.2E-06 2.7E-11 73.4 6.5 70 517-586 2-76 (105)
142 KOG4660|consensus 98.3 7.5E-07 1.6E-11 92.2 4.3 72 156-231 72-143 (549)
143 PF04059 RRM_2: RNA recognitio 98.3 8.5E-06 1.8E-10 66.7 9.6 80 160-239 2-88 (97)
144 KOG0151|consensus 98.2 1.9E-06 4.1E-11 91.1 7.0 82 27-108 169-255 (877)
145 KOG4660|consensus 98.2 8.5E-07 1.8E-11 91.8 4.3 177 29-237 72-249 (549)
146 KOG4209|consensus 98.2 1.6E-06 3.5E-11 83.2 5.8 80 158-238 100-180 (231)
147 PF11608 Limkain-b1: Limkain b 98.2 5.8E-06 1.3E-10 64.2 7.5 65 518-586 4-73 (90)
148 PF11608 Limkain-b1: Limkain b 98.2 4.3E-06 9.2E-11 64.9 6.4 69 33-110 3-77 (90)
149 KOG2193|consensus 98.1 3.5E-07 7.5E-12 90.9 -1.9 151 33-237 2-156 (584)
150 KOG1995|consensus 98.0 2.9E-05 6.3E-10 76.7 9.9 71 516-586 66-150 (351)
151 PF04059 RRM_2: RNA recognitio 98.0 3.7E-05 8E-10 62.9 8.5 76 33-108 2-85 (97)
152 KOG0112|consensus 97.8 2E-05 4.4E-10 85.8 4.7 71 516-586 455-527 (975)
153 KOG1995|consensus 97.7 2.2E-05 4.7E-10 77.6 3.4 81 30-110 64-154 (351)
154 KOG4676|consensus 97.7 3.7E-05 8.1E-10 76.2 5.0 187 32-226 7-214 (479)
155 PF08777 RRM_3: RNA binding mo 97.7 5.7E-05 1.2E-09 63.3 5.3 70 160-234 2-76 (105)
156 KOG2314|consensus 97.6 0.00012 2.7E-09 75.9 6.9 78 31-108 57-142 (698)
157 KOG0115|consensus 97.6 0.00016 3.4E-09 68.2 6.8 89 83-221 5-93 (275)
158 KOG4676|consensus 97.6 9.2E-05 2E-09 73.5 5.4 75 160-235 8-86 (479)
159 COG5175 MOT2 Transcriptional r 97.5 8.5E-05 1.9E-09 72.2 4.6 78 33-110 115-203 (480)
160 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00023 5.1E-09 51.5 5.6 52 517-569 2-53 (53)
161 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00014 3E-09 52.7 4.1 52 33-89 2-53 (53)
162 KOG2193|consensus 97.5 1.1E-05 2.4E-10 80.5 -2.3 69 518-586 82-153 (584)
163 KOG2314|consensus 97.3 0.001 2.2E-08 69.3 8.6 78 158-235 57-141 (698)
164 KOG4210|consensus 97.2 0.00033 7.1E-09 69.8 4.4 79 31-110 183-264 (285)
165 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0017 3.7E-08 53.6 7.1 65 516-582 6-83 (100)
166 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0013 2.8E-08 54.3 6.0 77 31-108 5-90 (100)
167 COG5175 MOT2 Transcriptional r 97.0 0.0016 3.4E-08 63.6 6.6 80 159-238 114-203 (480)
168 KOG2202|consensus 96.9 0.0003 6.5E-09 66.6 0.8 56 53-108 91-146 (260)
169 PF08952 DUF1866: Domain of un 96.9 0.0054 1.2E-07 53.8 8.1 72 512-586 23-103 (146)
170 KOG4849|consensus 96.8 0.00088 1.9E-08 65.6 3.5 75 159-233 80-157 (498)
171 KOG1855|consensus 96.8 0.00082 1.8E-08 67.8 3.0 62 515-576 230-310 (484)
172 KOG1855|consensus 96.7 0.0013 2.8E-08 66.5 3.8 70 156-225 228-311 (484)
173 KOG2202|consensus 96.7 0.00073 1.6E-08 64.0 1.9 66 174-239 83-149 (260)
174 KOG0115|consensus 96.6 0.005 1.1E-07 58.3 6.6 76 33-108 32-112 (275)
175 KOG4849|consensus 96.6 0.0012 2.6E-08 64.7 2.5 75 34-108 82-160 (498)
176 KOG1996|consensus 96.6 0.0046 9.9E-08 59.4 6.3 62 50-111 305-368 (378)
177 KOG3152|consensus 96.6 0.0015 3.3E-08 61.7 3.0 72 158-229 73-157 (278)
178 KOG1996|consensus 96.5 0.008 1.7E-07 57.8 7.3 64 173-236 300-365 (378)
179 PF08952 DUF1866: Domain of un 96.4 0.028 6.1E-07 49.3 9.1 78 155-240 23-109 (146)
180 PF10309 DUF2414: Protein of u 95.9 0.051 1.1E-06 40.4 7.4 54 160-220 6-62 (62)
181 KOG0921|consensus 95.8 0.056 1.2E-06 60.2 10.5 14 197-210 899-912 (1282)
182 KOG3152|consensus 95.8 0.0058 1.3E-07 57.8 2.6 64 518-581 76-157 (278)
183 PF08675 RNA_bind: RNA binding 95.6 0.049 1.1E-06 42.7 6.4 57 30-93 6-63 (87)
184 PF10309 DUF2414: Protein of u 95.5 0.087 1.9E-06 39.2 7.1 54 517-572 6-62 (62)
185 KOG2591|consensus 95.3 0.039 8.4E-07 57.8 6.6 70 160-235 176-249 (684)
186 PF15023 DUF4523: Protein of u 95.3 0.058 1.3E-06 46.6 6.5 77 25-108 79-160 (166)
187 KOG2416|consensus 95.0 0.02 4.2E-07 60.4 3.4 80 155-239 440-523 (718)
188 KOG4285|consensus 94.2 0.15 3.2E-06 49.7 7.1 71 34-110 199-270 (350)
189 KOG2068|consensus 93.8 0.021 4.5E-07 56.6 0.6 79 32-110 77-163 (327)
190 PF03880 DbpA: DbpA RNA bindin 93.8 0.34 7.4E-06 37.8 7.4 66 518-586 2-73 (74)
191 PF08675 RNA_bind: RNA binding 93.8 0.29 6.3E-06 38.5 6.6 55 517-574 10-64 (87)
192 PF04847 Calcipressin: Calcipr 93.7 0.17 3.8E-06 46.9 6.5 57 530-586 9-67 (184)
193 PF15023 DUF4523: Protein of u 93.6 0.32 6.9E-06 42.2 7.2 74 156-236 83-160 (166)
194 KOG2591|consensus 93.3 0.12 2.6E-06 54.3 5.1 71 512-583 171-245 (684)
195 KOG2416|consensus 93.3 0.058 1.3E-06 57.0 2.7 74 31-109 443-521 (718)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 93.0 0.23 5E-06 45.9 6.1 78 31-108 6-96 (176)
197 PF07576 BRAP2: BRCA1-associat 92.6 1.1 2.5E-05 37.7 9.2 66 160-226 14-80 (110)
198 KOG2135|consensus 92.6 0.065 1.4E-06 55.3 2.0 71 516-587 372-443 (526)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 92.3 0.23 4.9E-06 46.0 5.1 81 159-239 7-99 (176)
200 PF04847 Calcipressin: Calcipr 90.3 0.91 2E-05 42.2 6.8 63 172-239 8-72 (184)
201 KOG3285|consensus 90.0 0.38 8.3E-06 43.1 3.8 44 264-307 67-110 (203)
202 KOG4574|consensus 89.8 0.29 6.3E-06 54.1 3.5 79 161-244 300-380 (1007)
203 KOG4574|consensus 89.3 0.19 4.2E-06 55.5 1.8 74 30-108 296-372 (1007)
204 KOG2068|consensus 88.7 0.14 3E-06 50.9 0.2 79 160-238 78-163 (327)
205 PF07292 NID: Nmi/IFP 35 domai 88.6 2.9 6.3E-05 33.6 7.6 80 75-196 1-82 (88)
206 KOG4285|consensus 88.5 1.6 3.5E-05 42.8 7.1 65 515-581 196-260 (350)
207 PF11767 SET_assoc: Histone ly 88.3 2.5 5.4E-05 32.0 6.7 55 170-232 11-65 (66)
208 PF10567 Nab6_mRNP_bdg: RNA-re 88.3 28 0.00061 34.4 18.9 189 32-238 15-232 (309)
209 KOG0804|consensus 87.2 2.2 4.8E-05 44.2 7.6 67 159-226 74-141 (493)
210 PF03880 DbpA: DbpA RNA bindin 86.9 3.2 7E-05 32.2 6.9 58 170-235 12-74 (74)
211 KOG2135|consensus 86.0 0.48 1E-05 49.1 2.2 74 160-239 373-447 (526)
212 KOG2253|consensus 85.9 1.5 3.2E-05 47.6 5.9 68 514-584 38-105 (668)
213 PF07576 BRAP2: BRCA1-associat 84.5 7.9 0.00017 32.7 8.5 66 33-99 13-81 (110)
214 KOG2253|consensus 83.6 0.74 1.6E-05 49.9 2.4 73 155-235 36-108 (668)
215 PF11767 SET_assoc: Histone ly 80.2 7.8 0.00017 29.4 6.2 56 526-584 10-65 (66)
216 KOG4213|consensus 76.1 1.4 3.1E-05 39.7 1.4 69 31-103 110-180 (205)
217 KOG2318|consensus 74.5 14 0.0003 39.8 8.3 80 156-235 171-305 (650)
218 KOG3973|consensus 72.3 28 0.0006 35.0 9.3 14 162-175 152-165 (465)
219 KOG0804|consensus 64.0 21 0.00046 37.3 6.9 64 516-579 74-142 (493)
220 KOG4410|consensus 63.1 19 0.00041 35.2 5.9 51 156-211 327-378 (396)
221 KOG2318|consensus 60.9 43 0.00093 36.2 8.6 72 515-586 173-304 (650)
222 PF00403 HMA: Heavy-metal-asso 59.5 47 0.001 24.2 6.6 54 518-571 1-58 (62)
223 PF03468 XS: XS domain; Inter 57.6 14 0.00031 31.4 3.8 54 518-571 10-76 (116)
224 PRK14548 50S ribosomal protein 56.7 46 0.00099 26.6 6.2 56 162-219 23-80 (84)
225 TIGR03636 L23_arch archaeal ri 52.8 62 0.0013 25.4 6.3 57 161-219 15-73 (77)
226 PRK14548 50S ribosomal protein 51.2 44 0.00094 26.7 5.3 57 34-92 22-81 (84)
227 PF03468 XS: XS domain; Inter 50.2 11 0.00023 32.3 1.8 50 34-85 10-69 (116)
228 smart00666 PB1 PB1 domain. Pho 49.4 72 0.0016 24.8 6.5 66 519-586 12-80 (81)
229 KOG4019|consensus 47.0 18 0.00038 33.1 2.7 68 518-585 12-85 (193)
230 KOG4019|consensus 46.7 18 0.00039 33.1 2.8 76 160-240 11-92 (193)
231 KOG4483|consensus 46.6 47 0.001 34.1 5.9 55 159-219 391-446 (528)
232 PF14111 DUF4283: Domain of un 45.2 15 0.00033 32.7 2.2 84 72-193 55-139 (153)
233 PF10567 Nab6_mRNP_bdg: RNA-re 45.0 36 0.00078 33.7 4.7 79 158-236 14-106 (309)
234 TIGR03636 L23_arch archaeal ri 42.7 72 0.0016 25.0 5.3 57 34-92 15-74 (77)
235 PRK11901 hypothetical protein; 40.2 1.1E+02 0.0023 31.1 7.2 58 513-574 242-306 (327)
236 PF02714 DUF221: Domain of unk 34.7 54 0.0012 33.4 4.6 32 75-108 1-32 (325)
237 PF15513 DUF4651: Domain of un 34.3 96 0.0021 23.1 4.4 18 174-191 9-26 (62)
238 COG0445 GidA Flavin-dependent 33.8 1.4E+02 0.0031 32.6 7.5 101 74-208 238-343 (621)
239 KOG4483|consensus 32.7 78 0.0017 32.7 5.0 56 516-571 391-446 (528)
240 KOG4410|consensus 32.1 60 0.0013 31.8 3.9 47 517-563 331-378 (396)
241 PF07292 NID: Nmi/IFP 35 domai 31.8 31 0.00068 27.8 1.7 27 512-538 48-74 (88)
242 KOG2891|consensus 31.8 30 0.00065 33.6 1.9 39 27-65 144-195 (445)
243 COG5638 Uncharacterized conser 31.3 1.6E+02 0.0034 30.6 6.9 39 155-193 142-185 (622)
244 PF00564 PB1: PB1 domain; Int 31.1 1.6E+02 0.0034 22.9 5.9 60 522-585 16-80 (84)
245 PF07530 PRE_C2HC: Associated 28.6 78 0.0017 24.1 3.3 58 50-110 6-65 (68)
246 smart00596 PRE_C2HC PRE_C2HC d 28.1 69 0.0015 24.4 2.9 62 47-111 2-66 (69)
247 cd04908 ACT_Bt0572_1 N-termina 27.9 2.5E+02 0.0054 20.7 7.3 48 45-96 14-63 (66)
248 COG4907 Predicted membrane pro 27.6 54 0.0012 34.5 3.0 13 52-64 62-74 (595)
249 COG4371 Predicted membrane pro 27.2 1E+02 0.0022 29.8 4.5 13 528-540 155-167 (334)
250 PTZ00191 60S ribosomal protein 26.1 2.4E+02 0.0053 25.0 6.4 54 162-217 84-139 (145)
251 cd04908 ACT_Bt0572_1 N-termina 25.9 2.1E+02 0.0045 21.1 5.4 57 518-576 3-63 (66)
252 cd06406 PB1_P67 A PB1 domain i 25.8 1.5E+02 0.0032 23.4 4.5 58 517-576 11-72 (80)
253 PF07530 PRE_C2HC: Associated 25.8 1.3E+02 0.0028 22.9 4.1 62 174-238 2-65 (68)
254 cd06396 PB1_NBR1 The PB1 domai 25.0 3.5E+02 0.0076 21.5 6.4 60 524-586 16-78 (81)
255 PF08544 GHMP_kinases_C: GHMP 22.8 3.4E+02 0.0073 20.8 6.4 43 530-573 36-80 (85)
256 KOG2295|consensus 22.8 15 0.00033 39.3 -2.0 72 157-228 229-301 (648)
257 KOG1295|consensus 22.2 90 0.0019 32.2 3.4 61 517-577 8-77 (376)
258 PTZ00191 60S ribosomal protein 22.1 1.9E+02 0.0042 25.6 5.0 55 33-89 82-139 (145)
259 KOG1295|consensus 21.9 93 0.002 32.1 3.4 68 159-226 7-78 (376)
260 TIGR02542 B_forsyth_147 Bacter 21.1 1.9E+02 0.0041 24.4 4.4 44 167-210 82-129 (145)
261 KOG4008|consensus 20.8 73 0.0016 30.5 2.3 36 513-548 37-72 (261)
262 COG2608 CopZ Copper chaperone 20.5 2.5E+02 0.0055 21.3 4.9 55 517-571 4-62 (71)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.4e-45 Score=399.70 Aligned_cols=346 Identities=23% Similarity=0.316 Sum_probs=275.6
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
.|||+|||.++||++| ++|++||+|.+|+|++|. +++++|||||+|.+.++|++|++.|++..|.|++|+|.|+.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999 899999999999999997 89999999999999999999999999999999999999987443
Q ss_pred CCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEE
Q psy1534 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEI 191 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 191 (587)
..+. ....+|||+|||.++++++|+++|+.||.|.+|+|
T Consensus 82 ~~~~-----------------------------------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i 120 (562)
T TIGR01628 82 SLRR-----------------------------------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKV 120 (562)
T ss_pred cccc-----------------------------------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEe
Confidence 2111 11357999999999999999999999999999999
Q ss_pred eeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCC-CCCCCCCCcccccCCCCCCCchHHHHHH
Q psy1534 192 ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLD-GPVRLPEGLKSIGMGLGANGAPLQDVAN 270 (587)
Q Consensus 192 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~l~~~~~ 270 (587)
.++.+|+++|||||+|.+.++|.+|++.||+..+.++.|.|.....+.... ........+...+++...+++.|+++|.
T Consensus 121 ~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 121 ATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred eecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 999889999999999999999999999999999999999997655443321 1222345677889999999999999999
Q ss_pred hhhccccceeEEEEeccCccceeeeeceeeeeecCCCCCCc-eeEecCCCCCCHHHHHHHHhcCCCCCCC----CCCCCC
Q psy1534 271 WLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDA-ASVNTASKTDSTNAEKDKIGNLPNMNTN----PTPTAS 345 (587)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fv~~~~~~~~~~~~~~ai~~l~g~~~~----g~~~~~ 345 (587)
.++.+.. . .+..+ .++.+++ +||. |.+.+++.+|+..|+|..+. ++.+.
T Consensus 201 ~fG~i~~-----------------~---~i~~~-~~g~~~G~afV~----F~~~e~A~~Av~~l~g~~i~~~~~g~~l~- 254 (562)
T TIGR01628 201 KFGEITS-----------------A---AVMKD-GSGRSRGFAFVN----FEKHEDAAKAVEEMNGKKIGLAKEGKKLY- 254 (562)
T ss_pred hcCCEEE-----------------E---EEEEC-CCCCcccEEEEE----ECCHHHHHHHHHHhCCcEecccccceeeE-
Confidence 9876411 0 22223 3556666 6999 88999999999999998887 66554
Q ss_pred CchhhhhcccccccccCCCCCCCCCCcccccccCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q psy1534 346 VSTPAALAAAVTALTQAQQPPPPQPSLGNLGLNLGLGGAANDLTSNLTSTLTSLAAANQNTAYPLNQLSSQSGLGQSNIL 425 (587)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~ 425 (587)
+..+... ...... +. ..+...
T Consensus 255 v~~a~~k---------~er~~~----~~--------------------~~~~~~-------------------------- 275 (562)
T TIGR01628 255 VGRAQKR---------AEREAE----LR--------------------RKFEEL-------------------------- 275 (562)
T ss_pred eecccCh---------hhhHHH----HH--------------------hhHHhh--------------------------
Confidence 1111000 000000 00 000000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1534 426 SGMAAYSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDYGGGSGQASIQSGGYGNPRAGLDSN 505 (587)
Q Consensus 426 ~g~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 505 (587)
T Consensus 276 -------------------------------------------------------------------------------- 275 (562)
T TIGR01628 276 -------------------------------------------------------------------------------- 275 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC-----CCeEEEEECCHHHHHHHHHHhCCCcccCc
Q psy1534 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK-----GDIGLVRFDSEWTAKRAIDMMDRTRIDGK 580 (587)
Q Consensus 506 ~~~~~~~~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~-----~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~ 580 (587)
...........+|||.|||+++|+++|+++|++||.|+.|+|..+ +|+|||+|.+.++|++||+.|||..|+|+
T Consensus 276 -~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 276 -QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred -hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 000000112458999999999999999999999999999999654 48999999999999999999999999999
Q ss_pred eEEEEE
Q psy1534 581 IIDVTF 586 (587)
Q Consensus 581 ~i~v~~ 586 (587)
+|+|.+
T Consensus 355 ~l~V~~ 360 (562)
T TIGR01628 355 PLYVAL 360 (562)
T ss_pred eeEEEe
Confidence 999975
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.2e-43 Score=367.51 Aligned_cols=166 Identities=21% Similarity=0.367 Sum_probs=149.4
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+|||+|||.++++++| ++|++||+|.+|+|++|+ +|+++|||||+|.+.++|++||+.||+..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3578999999999999999 899999999999999997 89999999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
.... ....++|||+|||..+++++|+++|++||.|..
T Consensus 82 ~~~~-------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 118 (352)
T TIGR01661 82 PSSD-------------------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIIT 118 (352)
T ss_pred cccc-------------------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEE
Confidence 3321 112468999999999999999999999999999
Q ss_pred EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEccCCC
Q psy1534 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDRVAD 239 (587)
Q Consensus 189 v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~~~~ 239 (587)
+.++.+.. +.++|||||+|.+.++|++||+.|||..+.+ ++|.|+++....
T Consensus 119 ~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 119 SRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 99999874 8899999999999999999999999999887 567777765543
No 3
>KOG4212|consensus
Probab=100.00 E-value=1.7e-39 Score=316.52 Aligned_cols=242 Identities=47% Similarity=0.781 Sum_probs=188.4
Q ss_pred CcEEEcCCCCCCCHHHH-Hhc-ccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHL-STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F-~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
+.|||.|||++..+++| ++| ++.|+|+.|.++.|++|++||||.|||+++|.++||++.||.+.+.||+|.|+.....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 34999999999999999 777 7899999999999999999999999999999999999999999999999999987733
Q ss_pred cCCC---CC---------------------CCCCCC---CCCchhhhhccC-----CcccCC---------CCCCChhhh
Q psy1534 111 KGGR---RN---------------------MGGGGG---VDRDLSALLQNN-----SSKFGN---------TYGLSPQFL 149 (587)
Q Consensus 111 ~~~~---~~---------------------~~~~~~---~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~~ 149 (587)
+..+ .. +....+ .+.....+.... ...+.+ -|..+..++
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 3221 10 000000 000000011100 011111 234555666
Q ss_pred hccCC-CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy1534 150 ESLGI-NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228 (587)
Q Consensus 150 ~~~~~-~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 228 (587)
++... .+|...++||.||.+.+....|++.|.-.|.|+.|.+-.|+.|.++|||.|+|+.+-+|..||..|++.-+..+
T Consensus 205 r~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~ 284 (608)
T KOG4212|consen 205 RSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDR 284 (608)
T ss_pred hhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccc
Confidence 65554 56667899999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEEccCCCCCCCCCCCCCCcccccCCCCCCCchHHHHHHhhhcc
Q psy1534 229 RITVRMDRVADRLDGPVRLPEGLKSIGMGLGANGAPLQDVANWLLQE 275 (587)
Q Consensus 229 ~l~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~ 275 (587)
+..+++.+-.. +.....+|+.+.+.+.+.+...++|+.....++..
T Consensus 285 ~~~~Rl~~~~D-rn~g~~l~~~~~glg~gmdr~g~ele~~~~~l~~~ 330 (608)
T KOG4212|consen 285 RMTVRLDRIPD-RNEGIKLPEGLGGLGIGMDRNGEELEDVAHNLPNG 330 (608)
T ss_pred cceeecccccc-ccccccccccccceeeccCCCccHHHHhhcccCCc
Confidence 99998876654 33445678888888888889999998887665543
No 4
>KOG0144|consensus
Probab=100.00 E-value=1.4e-40 Score=324.40 Aligned_cols=172 Identities=24% Similarity=0.363 Sum_probs=152.5
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCce-eCC--eEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKG--RKL 102 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~-l~g--r~i 102 (587)
.+.+..++||+.||..++|+|| ++|++||.|.+|.|++|+ ++.+||||||.|.+.++|.+|+.+||+.+ |.| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3457779999999999999999 899999999999999998 99999999999999999999999999854 544 899
Q ss_pred EEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHh
Q psy1534 103 VIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRL 182 (587)
Q Consensus 103 ~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~ 182 (587)
.|++++.++.. .....+|||+-|+..++|.|++++|++
T Consensus 110 qvk~Ad~E~er------------------------------------------~~~e~KLFvg~lsK~~te~evr~iFs~ 147 (510)
T KOG0144|consen 110 QVKYADGERER------------------------------------------IVEERKLFVGMLSKQCTENEVREIFSR 147 (510)
T ss_pred eecccchhhhc------------------------------------------cccchhhhhhhccccccHHHHHHHHHh
Confidence 99999844310 011358999999999999999999999
Q ss_pred cCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCC--eEEEEEEccCCCCC
Q psy1534 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-LFE--RRITVRMDRVADRL 241 (587)
Q Consensus 183 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~-~~g--~~l~v~~a~~~~~~ 241 (587)
||.|++|.|++|.++.+||||||+|.+.|.|..||+.||+.. +.| .+|.|+|+++++.+
T Consensus 148 fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 148 FGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 999999999999999999999999999999999999999864 554 58999999887643
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.1e-39 Score=347.10 Aligned_cols=167 Identities=20% Similarity=0.257 Sum_probs=138.5
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh--CCceeCCeEEEEEecc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKM--HRFETKGRKLVIKEAV 108 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l--~g~~l~gr~i~V~~a~ 108 (587)
.+.|||+|||+++++++| ++|++||+|.+|+|+++ |+||||+|.+.++|++|++.+ ++..|.|++|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 468999999999999999 89999999999999974 689999999999999999864 7899999999999997
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
.++..+... ..+. ........+|||.||++.+++++|+++|++||.|.+
T Consensus 77 ~~~~~~~~~------------------~~~~-------------~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 77 SQEIKRDGN------------------SDFD-------------SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred CcccccCCC------------------Cccc-------------CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 543222110 0000 001112357999999999999999999999999999
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEccC
Q psy1534 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDRV 237 (587)
Q Consensus 189 v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~~ 237 (587)
|.|+++.. +++|||+|.+.++|.+|++.|||..|.+ +.|+|.|++.
T Consensus 126 v~i~~~~~---~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 126 IVTFTKNN---VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred EEEEecCC---ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 99988642 4799999999999999999999999975 5788888775
No 6
>KOG0117|consensus
Probab=100.00 E-value=3.5e-39 Score=316.37 Aligned_cols=162 Identities=22% Similarity=0.355 Sum_probs=148.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETK-GRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~-gr~i~V~ 105 (587)
++....|||+.||.|+.|+|| .+|++.|+|.+++||+|+ +|.+||||||+|.+.++|++||+.||+++|. |+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 356779999999999999999 899999999999999997 9999999999999999999999999999996 9999999
Q ss_pred ecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q psy1534 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185 (587)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 185 (587)
.+.. .|+|||+|||.+.++++|.+.|++.++
T Consensus 160 ~Sva-------------------------------------------------n~RLFiG~IPK~k~keeIlee~~kVte 190 (506)
T KOG0117|consen 160 VSVA-------------------------------------------------NCRLFIGNIPKTKKKEEILEEMKKVTE 190 (506)
T ss_pred Eeee-------------------------------------------------cceeEeccCCccccHHHHHHHHHhhCC
Confidence 8873 379999999999999999999999987
Q ss_pred -eeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEEccCCC
Q psy1534 186 -VENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLN--NQNLFERRITVRMDRVAD 239 (587)
Q Consensus 186 -i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~~a~~~~ 239 (587)
|++|.+..+++ .++||||||+|.++..|..|-+.|- ..++.|..+.|.||.+..
T Consensus 191 GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~ 249 (506)
T KOG0117|consen 191 GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE 249 (506)
T ss_pred CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCccc
Confidence 78888888774 8899999999999999999998873 346789999999998875
No 7
>KOG0145|consensus
Probab=100.00 E-value=6.5e-39 Score=293.15 Aligned_cols=168 Identities=21% Similarity=0.399 Sum_probs=152.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....+|.|.-||.++|++|| .+|...|+|++|++++|+ +|.|.||+||.|.+++||++|+..|||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 345568999999999999999 799999999999999998 999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCe
Q psy1534 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186 (587)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i 186 (587)
+.+.. .......|||++||..+|..||+++|++||.|
T Consensus 118 ARPSs-------------------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrI 154 (360)
T KOG0145|consen 118 ARPSS-------------------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRI 154 (360)
T ss_pred ccCCh-------------------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhh
Confidence 98432 12234689999999999999999999999999
Q ss_pred eEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEccCCC
Q psy1534 187 ENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDRVAD 239 (587)
Q Consensus 187 ~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~~~~ 239 (587)
...+|+.|.. |.+||.+||+|+..++|++||+.|||++-.| .+|.|+++....
T Consensus 155 ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 155 ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999998884 9999999999999999999999999998765 579999986654
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.2e-38 Score=332.69 Aligned_cols=160 Identities=22% Similarity=0.302 Sum_probs=138.2
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK-GRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~-gr~i~V~~a 107 (587)
....+|||+|||.+++|++| ++|++||+|.+|+|++|.+|++||||||+|.+.|+|++||+.||+..|. ++.|.|..+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34579999999999999999 8999999999999999999999999999999999999999999999885 788777655
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC-e
Q psy1534 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK-V 186 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i 186 (587)
.. .++|||+|||+++++++|.++|++++. +
T Consensus 136 ~~-------------------------------------------------~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 136 VD-------------------------------------------------NCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred cc-------------------------------------------------CceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 41 358999999999999999999999875 4
Q ss_pred eEEEEeeCC--CCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEEccCC
Q psy1534 187 ENVEIALDK--DGKSRGFGTVEFDHPVEAVQSISMLNN--QNLFERRITVRMDRVA 238 (587)
Q Consensus 187 ~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~~a~~~ 238 (587)
+++.+.... .++++|||||+|.++++|.+|++.|+. ..+.|+.|.|+|+.+.
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 554443322 278899999999999999999998864 3578999999987654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.1e-35 Score=320.21 Aligned_cols=175 Identities=26% Similarity=0.430 Sum_probs=151.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||+++++++| ++|++||+|.+|+|++|+ +++++|||||+|.+.++|++||. |+|..|.|++|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 4568999999999999999 899999999999999997 89999999999999999999995 89999999999999876
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
.+...... ... ......+..++|||+|||..+++++|+++|+.||.|..
T Consensus 167 ~~~~~~~~-----------------~~~--------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~ 215 (457)
T TIGR01622 167 AEKNRAAK-----------------AAT--------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIED 215 (457)
T ss_pred hhhhhhhh-----------------ccc--------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEE
Confidence 33211000 000 00001223679999999999999999999999999999
Q ss_pred EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 189 v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
|.|++++. |+++|||||+|.+.++|.+|++.|||..|.|++|.|.++..
T Consensus 216 v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 216 VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999986 79999999999999999999999999999999999999873
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=9e-35 Score=309.59 Aligned_cols=178 Identities=18% Similarity=0.306 Sum_probs=153.4
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
....+|||+|||+++++++| ++|++||+|.+|+|++|+ ++++||||||+|.+.++|++|++.|||..|.||+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45678999999999999999 899999999999999997 9999999999999999999999999999999999999865
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCee
Q psy1534 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVE 187 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 187 (587)
........ ............++|||+|||+++++++|+++|+.||.|.
T Consensus 185 ~~~p~a~~--------------------------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~ 232 (612)
T TIGR01645 185 SNMPQAQP--------------------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV 232 (612)
T ss_pred cccccccc--------------------------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCee
Confidence 42210000 0000000122346999999999999999999999999999
Q ss_pred EEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 188 NVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 188 ~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
+|+|.+++. ++++|||||+|.+.++|.+||+.||+..|+|+.|+|.++....
T Consensus 233 svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 233 KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999986 8899999999999999999999999999999999999887653
No 11
>KOG0127|consensus
Probab=100.00 E-value=5.4e-35 Score=292.82 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=156.9
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..+|||++||+.++-++| ++|+.+|+|..|.++.++ ++.+|||+||+|+-.||+++|++.+++..|.||.|.|..+.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 379999999999999999 899999999999999997 889999999999999999999999999999999999999984
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
+...... ..+. ............+... ....+..+|.|+||||.+.+.+|+.+|+.||.|.+|
T Consensus 85 R~r~e~~---~~~e-----------~~~veK~~~q~~~~k~---~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei 147 (678)
T KOG0127|consen 85 RARSEEV---EKGE-----------NKAVEKPIEQKRPTKA---KVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI 147 (678)
T ss_pred cccchhc---cccc-----------chhhhcccccCCcchh---hccCccceEEeecCCcccCcHHHHHHHhhcceEEEE
Confidence 4321100 0000 0000000000000000 001224589999999999999999999999999999
Q ss_pred EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q psy1534 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241 (587)
Q Consensus 190 ~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 241 (587)
.|++.++|+-.|||||.|.+..+|.+||+.+|+.+|.||+|.|.||-++...
T Consensus 148 ~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 148 VIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 9999888888899999999999999999999999999999999999888743
No 12
>KOG0123|consensus
Probab=100.00 E-value=5.1e-33 Score=283.90 Aligned_cols=331 Identities=23% Similarity=0.296 Sum_probs=259.3
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccccC
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~ 112 (587)
.|||+ +++|+..| ++|+++|+|.+|+|++|. . |.|||||.|.++++|++|+++||...+.|++|+|.|+.+..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 58999 89999999 999999999999999999 5 99999999999999999999999999999999999998553
Q ss_pred CCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEe
Q psy1534 113 GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA 192 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~ 192 (587)
..|||.||+++++..+|.++|+.||+|++|++.
T Consensus 77 -----------------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~ 109 (369)
T KOG0123|consen 77 -----------------------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVA 109 (369)
T ss_pred -----------------------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEE
Confidence 139999999999999999999999999999999
Q ss_pred eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCCC----CCCCCcccccCCCCCCCchHHHH
Q psy1534 193 LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGPV----RLPEGLKSIGMGLGANGAPLQDV 268 (587)
Q Consensus 193 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~l~~~ 268 (587)
.+.+| ++|| ||+|+++++|.+||+.|||..+.+++|.|.....+..+..+. +.-............+...+..+
T Consensus 110 ~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~ 187 (369)
T KOG0123|consen 110 TDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDL 187 (369)
T ss_pred EcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHh
Confidence 99988 8999 999999999999999999999999999998876654332221 11233344566666777788888
Q ss_pred HHhhhccccceeEEEEeccCccceeeeeceeeeeecCCCCCCc-eeEecCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCc
Q psy1534 269 ANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDA-ASVNTASKTDSTNAEKDKIGNLPNMNTNPTPTASVS 347 (587)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fv~~~~~~~~~~~~~~ai~~l~g~~~~g~~~~~~~ 347 (587)
|..++.+.. -....+..+.+++ +||. |.+.+++..|+..|++....+..+- +.
T Consensus 188 f~~~g~i~s---------------------~~v~~~~~g~~~~~gfv~----f~~~e~a~~av~~l~~~~~~~~~~~-V~ 241 (369)
T KOG0123|consen 188 FSAYGSITS---------------------VAVMRDSIGKSKGFGFVN----FENPEDAKKAVETLNGKIFGDKELY-VG 241 (369)
T ss_pred hcccCcceE---------------------EEEeecCCCCCCCcccee----ecChhHHHHHHHhccCCcCCcccee-ec
Confidence 888777522 2233444455666 5999 7779999999999999887755554 11
Q ss_pred hhhhhcccccccccCCCCCCCCCCcccccccCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccc
Q psy1534 348 TPAALAAAVTALTQAQQPPPPQPSLGNLGLNLGLGGAANDLTSNLTSTLTSLAAANQNTAYPLNQLSSQSGLGQSNILSG 427 (587)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~g 427 (587)
.+.. ..-.....- ......
T Consensus 242 ~aqk-----k~e~~~~l~----------------------------~~~~~~---------------------------- 260 (369)
T KOG0123|consen 242 RAQK-----KSEREAELK----------------------------RKFEQE---------------------------- 260 (369)
T ss_pred cccc-----chhhHHHHh----------------------------hhhHhh----------------------------
Confidence 1110 000000000 000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1534 428 MAAYSQGMQSQTSSLSSGNNVYSNQSAPSTDYSRNASNMYGNSRYGSGGNEMDYGGGSGQASIQSGGYGNPRAGLDSNRS 507 (587)
Q Consensus 428 ~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 507 (587)
.
T Consensus 261 -------------------------------------------------------------------------------~ 261 (369)
T KOG0123|consen 261 -------------------------------------------------------------------------------F 261 (369)
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred CCCCCCCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC-----CCeEEEEECCHHHHHHHHHHhCCCcccCceE
Q psy1534 508 MNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK-----GDIGLVRFDSEWTAKRAIDMMDRTRIDGKII 582 (587)
Q Consensus 508 ~~~~~~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~-----~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i 582 (587)
...........|+|.||+..++.++|++.|..||+|++++|..+ +|+|||+|.+.++|.+|+..+|+..+.++.|
T Consensus 262 ~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l 341 (369)
T KOG0123|consen 262 AKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPL 341 (369)
T ss_pred hhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCch
Confidence 00000112348999999999999999999999999999988442 5999999999999999999999999999988
Q ss_pred EEE
Q psy1534 583 DVT 585 (587)
Q Consensus 583 ~v~ 585 (587)
.|-
T Consensus 342 ~va 344 (369)
T KOG0123|consen 342 YVA 344 (369)
T ss_pred hhh
Confidence 764
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.1e-32 Score=299.00 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=141.3
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccC------------CCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCce
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTV------------GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~------------G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~ 96 (587)
...++|||+|||+++|+++| ++|.+| +.|..|.+.+ .+|||||+|.+.++|.+|| .|+|..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 45678999999999999999 788864 3566665544 4799999999999999999 599999
Q ss_pred eCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHH
Q psy1534 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKL 176 (587)
Q Consensus 97 l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l 176 (587)
|.|++|+|......... .. ..... ....+....... . ............++|||+|||+.+++++|
T Consensus 247 ~~g~~l~v~r~~~~~~~-~~--~~~~~---~~~~~~~~~~~~----~----~~~~~~~~~~~~~~l~v~nlp~~~~~~~l 312 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPV-PQ--ITPEV---SQKNPDDNAKNV----E----KLVNSTTVLDSKDRIYIGNLPLYLGEDQI 312 (509)
T ss_pred eeCceeEecCccccCCc-cc--cCCCC---CCCCCccccccc----c----cccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 99999999765421100 00 00000 000000000000 0 00000112234579999999999999999
Q ss_pred HHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 177 REVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 177 ~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
+++|+.||.|..+.|+++.. |.++|||||+|.+.++|..||+.|||..|.|+.|.|.++....
T Consensus 313 ~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 313 KELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred HHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999999999999999874 9999999999999999999999999999999999999986543
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-32 Score=302.86 Aligned_cols=285 Identities=16% Similarity=0.244 Sum_probs=228.1
Q ss_pred CCCCchhHHHHHHcCCCCCcc-cccc-------CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcc
Q psy1534 2 TSPVTETELVEQIAHQDFPMF-QRIE-------TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPR 72 (587)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~sk 72 (587)
.++.++..|.+.++...+..+ .++. .......+|||+|||.++++++| ++|++||.|.+|+|+++.+|++|
T Consensus 50 ~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~sk 129 (562)
T TIGR01628 50 QNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSR 129 (562)
T ss_pred CCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcc
Confidence 455566777777766644222 1111 11123457999999999999999 89999999999999999999999
Q ss_pred eEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhcc
Q psy1534 73 GSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL 152 (587)
Q Consensus 73 G~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (587)
|||||+|.+.++|++|++.||+..+.++.|.|....++....
T Consensus 130 g~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~-------------------------------------- 171 (562)
T TIGR01628 130 GYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE-------------------------------------- 171 (562)
T ss_pred cEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc--------------------------------------
Confidence 999999999999999999999999999999998766332100
Q ss_pred CCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC----Ce
Q psy1534 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF----ER 228 (587)
Q Consensus 153 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~ 228 (587)
.......++|||+|||+++++++|+++|+.||.|.++.++++.+++++|||||+|.+.++|.+|++.||+..+. ++
T Consensus 172 ~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~ 251 (562)
T TIGR01628 172 AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGK 251 (562)
T ss_pred cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccce
Confidence 00112246899999999999999999999999999999999988999999999999999999999999999999 99
Q ss_pred EEEEEEccCCCCCCC--------------CCCCCCCcccccCCCCCCCchHHHHHHhhhccccceeEEEEeccCccceee
Q psy1534 229 RITVRMDRVADRLDG--------------PVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLE 294 (587)
Q Consensus 229 ~l~v~~a~~~~~~~~--------------~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (587)
.|.|.++..+..+.. .......+...+++...+.+.|+++|..++.+. +
T Consensus 252 ~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~-----------------~ 314 (562)
T TIGR01628 252 KLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEIT-----------------S 314 (562)
T ss_pred eeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeE-----------------E
Confidence 999988765543210 011223467789999999999999999988752 1
Q ss_pred eeceeeeeecCCCCCCc-eeEecCCCCCCHHHHHHHHhcCCCCCCCCCCCCCCchhh
Q psy1534 295 RWDFKLQYDKSSDENDA-ASVNTASKTDSTNAEKDKIGNLPNMNTNPTPTASVSTPA 350 (587)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~fv~~~~~~~~~~~~~~ai~~l~g~~~~g~~~~~~~~~~ 350 (587)
. ++..+ .++.+++ +||. |.+.++|.+|+..|+|..+.|++|. |.++.
T Consensus 315 ~---~i~~d-~~g~~~g~gfV~----f~~~~~A~~A~~~~~g~~~~gk~l~-V~~a~ 362 (562)
T TIGR01628 315 A---KVMLD-EKGVSRGFGFVC----FSNPEEANRAVTEMHGRMLGGKPLY-VALAQ 362 (562)
T ss_pred E---EEEEC-CCCCcCCeEEEE----eCCHHHHHHHHHHhcCCeeCCceeE-EEecc
Confidence 1 34444 5677777 5999 9999999999999999999999997 65543
No 15
>KOG0148|consensus
Probab=100.00 E-value=7.5e-33 Score=255.42 Aligned_cols=139 Identities=24% Similarity=0.347 Sum_probs=118.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...+++|||+||+.++||+.| .+|++.|+|++|+|+.| .|+|.++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 356789999999999999998 89999999999999986 4566666
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCee
Q psy1534 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVE 187 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 187 (587)
........ + .....-.+||+.|...++-++|++.|.+||+|.
T Consensus 49 ~~p~nQsk----------------~----------------------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS 90 (321)
T KOG0148|consen 49 TAPGNQSK----------------P----------------------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVS 90 (321)
T ss_pred cCcccCCC----------------C----------------------ccccceeEEehhcchhcchHHHHHHhccccccc
Confidence 63311100 0 111123799999999999999999999999999
Q ss_pred EEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 188 NVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 188 ~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
+++|++|.. +++|||+||.|-..++|++||..|||+.|.+|.|+-.|+..+.
T Consensus 91 ~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 91 DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 999999985 9999999999999999999999999999999999999987664
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2e-32 Score=278.39 Aligned_cols=171 Identities=23% Similarity=0.349 Sum_probs=153.9
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.......+|||+|||+++|+++| ++|++||+|++|+|++|. ++++||||||+|.++++|++||+.||+..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44557789999999999999999 899999999999999996 9999999999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcC
Q psy1534 105 KEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184 (587)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 184 (587)
.++..... ....++|||+|||++++|++|+++|++||
T Consensus 182 ~~a~p~~~-------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 182 SYARPGGE-------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred eccccccc-------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 98863210 11235899999999999999999999999
Q ss_pred CeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEccCCCC
Q psy1534 185 KVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDRVADR 240 (587)
Q Consensus 185 ~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~~~~~ 240 (587)
.|+.|+|++++ +++++|||||+|.+.++|++||+.||+..+.+ ++|+|+++....+
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999998 49999999999999999999999999999875 6889988876653
No 17
>KOG0148|consensus
Probab=99.97 E-value=3.2e-30 Score=238.06 Aligned_cols=177 Identities=20% Similarity=0.314 Sum_probs=157.8
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..-|||+-|..+++-++| +.|.+||+|.+++|++|. |++||||+||.|.+.++|++||..|||.-|++|.|+-.|+.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 446999999999999999 889999999999999997 999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
|..+.- ..+..+.+-.....+..|+|||+|++.-++|++|++.|++||.|.+|
T Consensus 142 Kp~e~n---------------------------~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EV 194 (321)
T KOG0148|consen 142 KPSEMN---------------------------GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEV 194 (321)
T ss_pred CccccC---------------------------CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEE
Confidence 863211 01122334445567778999999999999999999999999999999
Q ss_pred EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q psy1534 190 EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240 (587)
Q Consensus 190 ~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~ 240 (587)
+|.++ +||+||+|+++|.|.+||..+|+.+|.|..++|.|-+....
T Consensus 195 RvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 195 RVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred EEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99998 69999999999999999999999999999999999876653
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.7e-28 Score=253.05 Aligned_cols=237 Identities=19% Similarity=0.217 Sum_probs=166.6
Q ss_pred CCCchhHHHHHHcCCCCCccc------cccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceE
Q psy1534 3 SPVTETELVEQIAHQDFPMFQ------RIETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGS 74 (587)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~ 74 (587)
++-+...|+..+++..+.... +.........+|||+|||.++++++| ++|++||+|..++++++. ++.++||
T Consensus 54 ~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~ 133 (352)
T TIGR01661 54 RPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGV 133 (352)
T ss_pred cHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcE
Confidence 344556666677766553321 11111234568999999999999999 889999999999999997 8899999
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCC--eEEEEEecccccCCCCCCCCC--------CCCC------------------Cc
Q psy1534 75 AIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVEDKGGRRNMGGG--------GGVD------------------RD 126 (587)
Q Consensus 75 aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~a~~~~~~~~~~~~~--------~~~~------------------~~ 126 (587)
|||+|.+.++|++|++.||+..+.+ ++|.|.++..+.......-.. .... ..
T Consensus 134 ~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (352)
T TIGR01661 134 GFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAA 213 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCccc
Confidence 9999999999999999999999877 678898886333111000000 0000 00
Q ss_pred hhhhh--------------ccCCcccCCCCCCCh-------hhhh--ccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhc
Q psy1534 127 LSALL--------------QNNSSKFGNTYGLSP-------QFLE--SLGINCPLINKVFVANLDYKVDEKKLREVFRLA 183 (587)
Q Consensus 127 ~~~~~--------------~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~ 183 (587)
.+... .............++ .... ........+.+|||+|||+++++++|+++|++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f 293 (352)
T TIGR01661 214 RFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF 293 (352)
T ss_pred ccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC
Confidence 00000 000000000000000 0000 000012234579999999999999999999999
Q ss_pred CCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 184 GKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 184 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
|.|.+|+|++|+ +++++|||||+|.+.++|.+||..|||..|.||.|+|.|+..+.
T Consensus 294 G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 294 GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999998 59999999999999999999999999999999999999987764
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=3.3e-27 Score=254.04 Aligned_cols=279 Identities=17% Similarity=0.192 Sum_probs=193.3
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEecccc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVED 110 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~a~~~ 110 (587)
+|||+||++.+++++| ++|++||+|++|+|+++.. +++|||+|.+.++|.+|++.|||..|.+ +.|+|.++...
T Consensus 98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 7999999999999999 8999999999999988642 4799999999999999999999999975 58999888732
Q ss_pred cC-------CCCCCCC-----CCCCCCch--hhhhcc---------CCcccCC----------------------C----
Q psy1534 111 KG-------GRRNMGG-----GGGVDRDL--SALLQN---------NSSKFGN----------------------T---- 141 (587)
Q Consensus 111 ~~-------~~~~~~~-----~~~~~~~~--~~~~~~---------~~~~~~~----------------------~---- 141 (587)
.. ...+... .+...... ....+. ....++. .
T Consensus 175 ~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (481)
T TIGR01649 175 RLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPA 254 (481)
T ss_pred CceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCccc
Confidence 21 0000000 00000000 000000 0000000 0
Q ss_pred CCCChh--hhhc-cCCCCCCCcEEEEecCCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHH
Q psy1534 142 YGLSPQ--FLES-LGINCPLINKVFVANLDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217 (587)
Q Consensus 142 ~~~~~~--~~~~-~~~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al 217 (587)
+...+. .... .....+++++|||+|||+ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+||
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 255 YEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLAL 330 (481)
T ss_pred ccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHH
Confidence 000000 0000 001235678999999998 69999999999999999999999874 699999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCCCCCCC---------------------C------------CCCCCcccccCCCCCCCch
Q psy1534 218 SMLNNQNLFERRITVRMDRVADRLDGP---------------------V------------RLPEGLKSIGMGLGANGAP 264 (587)
Q Consensus 218 ~~l~g~~~~g~~l~v~~a~~~~~~~~~---------------------~------------~~~~~~~~~g~~~~~~~~~ 264 (587)
..||+..|.|++|+|.+++........ . .....+...+++...+.+.
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 999999999999999987554210000 0 0012456689999999999
Q ss_pred HHHHHHhhhccccceeEEEEeccCccceeeeeceeeeeecCCCCCCceeEecCCCCCCHHHHHHHHhcCCCCCCCCCC
Q psy1534 265 LQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTNAEKDKIGNLPNMNTNPTP 342 (587)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~~~~~~~ai~~l~g~~~~g~~ 342 (587)
|+++|..++...+... ++ +.+.......+||. |.+.++|.+||..|+|..+.++.
T Consensus 411 L~~lF~~~G~~~i~~i------------------k~-~~~~~~~~~~gfVe----F~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 411 LKELFAENGVHKVKKF------------------KF-FPKDNERSKMGLLE----WESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred HHHHHHhcCCccceEE------------------EE-ecCCCCcceeEEEE----cCCHHHHHHHHHHhcCCccCCCC
Confidence 9999999876211111 11 12222222336999 88999999999999999998875
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=9e-27 Score=237.00 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
.....++|||+|||++++|++|+++|+.||.|++|+|++|+. ++++|||||+|.++++|++||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 344578999999999999999999999999999999999975 9999999999999999999999999999999999998
Q ss_pred Ecc
Q psy1534 234 MDR 236 (587)
Q Consensus 234 ~a~ 236 (587)
+++
T Consensus 183 ~a~ 185 (346)
T TIGR01659 183 YAR 185 (346)
T ss_pred ccc
Confidence 754
No 21
>KOG0124|consensus
Probab=99.95 E-value=3.1e-26 Score=219.27 Aligned_cols=176 Identities=18% Similarity=0.309 Sum_probs=152.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
-..+|||+.|.+++.|+.| ..|..||+|++|.+-.|+ |+++||||||+|+-+|.|+.|++.||+..++||.|+|.+..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4578999999999999999 689999999999999998 99999999999999999999999999999999999998554
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
... ...+.......+...-++|||..+.++++|+||+.+|+.||+|.+
T Consensus 192 Nmp--------------------------------QAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~ 239 (544)
T KOG0124|consen 192 NMP--------------------------------QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK 239 (544)
T ss_pred CCc--------------------------------ccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceee
Confidence 211 111111111122333579999999999999999999999999999
Q ss_pred EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 189 v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
|.+.++++ +.++||+||+|.+..+...||..||=..++|..|+|-.+-..
T Consensus 240 C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 240 CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 99999997 889999999999999999999999999999999999765443
No 22
>KOG0147|consensus
Probab=99.94 E-value=9.1e-27 Score=235.77 Aligned_cols=179 Identities=25% Similarity=0.363 Sum_probs=149.6
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+.++||+-.|....+..+| ++|+.+|+|.+|.|+.|+ ++++||.|||+|.+.+....|| .|.|+.+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 3448999999999999999 899999999999999997 9999999999999999999999 789999999999999887
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
..+..... ....+ . . .....+...|||+||.+++++++|+.+|++||.|..
T Consensus 257 aeknr~a~-----------------~s~a~----------~-~-k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~ 307 (549)
T KOG0147|consen 257 AEKNRAAN-----------------ASPAL----------Q-G-KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN 307 (549)
T ss_pred HHHHHHHh-----------------ccccc----------c-c-cccccchhhhhhcccccCchHHHHhhhccCccccee
Confidence 44321000 00000 0 0 000112234999999999999999999999999999
Q ss_pred EEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 189 VEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 189 v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
|.+++|. +|.++||+||+|.+.++|.+|++.|||.+|-|+.|+|..-....
T Consensus 308 v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 308 VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999998 59999999999999999999999999999999999998754443
No 23
>KOG0131|consensus
Probab=99.94 E-value=4.2e-27 Score=205.61 Aligned_cols=170 Identities=25% Similarity=0.344 Sum_probs=153.7
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
....+|||+||+..++++.| ++|-+.|+|.+++|.+|+ +...+|||||+|.++|+|+-|++-||..++.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35679999999999999999 999999999999999998 8899999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCee
Q psy1534 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVE 187 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 187 (587)
..... ..+.+.+|||+||.+.++|..|.+.|+.||.+.
T Consensus 87 s~~~~------------------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~ 124 (203)
T KOG0131|consen 87 SAHQK------------------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLI 124 (203)
T ss_pred ccccc------------------------------------------cccccccccccccCcchhHHHHHHHHHhccccc
Confidence 82211 122346899999999999999999999999975
Q ss_pred E-EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q psy1534 188 N-VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241 (587)
Q Consensus 188 ~-v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 241 (587)
. -+|+++.+ |.++||+||.|.+.|.+.+|+..+|++.++.++++|.++..+..+
T Consensus 125 ~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 125 SPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 5 48999987 999999999999999999999999999999999999999877644
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=2.3e-25 Score=237.67 Aligned_cols=194 Identities=20% Similarity=0.228 Sum_probs=153.0
Q ss_pred CCCCchhHHHHHHcCCCCCcccccc-CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCC-eEEEEEeeCC--CCCcceEEE
Q psy1534 2 TSPVTETELVEQIAHQDFPMFQRIE-TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGD-VTYVEILNDD--TGKPRGSAI 76 (587)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~-V~~v~i~~d~--~g~skG~aF 76 (587)
+++-++..|+..+++..+...+... .......+|||+|||.++++++| ++|+++++ |+++.++..+ +++++||||
T Consensus 107 ~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAF 186 (578)
T TIGR01648 107 CGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAF 186 (578)
T ss_pred CCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEE
Confidence 4455667778888876663221111 11234678999999999999999 88999874 5565554332 567899999
Q ss_pred EEECCHHHHHHHHHHhCC--ceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCC
Q psy1534 77 VEFQSPDLVRKAVNKMHR--FETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGI 154 (587)
Q Consensus 77 V~F~~~e~A~~Al~~l~g--~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (587)
|+|.+.++|.+|++.|+. ..+.|+.|.|.|+.++..... .
T Consensus 187 VeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~--------------------------------------~ 228 (578)
T TIGR01648 187 VEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE--------------------------------------D 228 (578)
T ss_pred EEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc--------------------------------------c
Confidence 999999999999998864 568899999999985431100 0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhc--CCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLA--GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
.....++|||+|||+++++++|+++|++| |.|++|.+++ +||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V 301 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEV 301 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 11234689999999999999999999999 9999998764 59999999999999999999999999999999
Q ss_pred EEccCCCC
Q psy1534 233 RMDRVADR 240 (587)
Q Consensus 233 ~~a~~~~~ 240 (587)
.++++..+
T Consensus 302 ~~Akp~~~ 309 (578)
T TIGR01648 302 TLAKPVDK 309 (578)
T ss_pred EEccCCCc
Confidence 99987653
No 25
>KOG0123|consensus
Probab=99.94 E-value=3.3e-25 Score=226.56 Aligned_cols=282 Identities=16% Similarity=0.243 Sum_probs=226.6
Q ss_pred CCCCCchhHHHHHHcCCCCCcc-ccccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEE
Q psy1534 1 MTSPVTETELVEQIAHQDFPMF-QRIETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVE 78 (587)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~ 78 (587)
|+.|-++..|...++...+..+ .|+-....++..|||+||+.+++.++| ++|+.||+|.+|++.+|.+| +||| ||+
T Consensus 44 f~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~ 121 (369)
T KOG0123|consen 44 FQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQ 121 (369)
T ss_pred cCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEE
Confidence 4677788888999888877553 333344445555999999999999999 89999999999999999999 9999 999
Q ss_pred ECCHHHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCC
Q psy1534 79 FQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPL 158 (587)
Q Consensus 79 F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (587)
|+++++|++|++.+||..+.+++|.|....+++..... .. .....
T Consensus 122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~--------------------~~---------------~~~~~ 166 (369)
T KOG0123|consen 122 FESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAP--------------------LG---------------EYKKR 166 (369)
T ss_pred eCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccc--------------------cc---------------chhhh
Confidence 99999999999999999999999999998855421100 00 01122
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
-+.++|.|++.+++++.|.++|..+|.|.++.++.+..+++++|+||.|.++++|..|++.|++..+.+..+.|..+..+
T Consensus 167 ~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 167 FTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred hhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999988876653
Q ss_pred CCCCC--------------CCCCCCCcccccCCCCCCCchHHHHHHhhhccccceeEEEEeccCccceeeeeceeeeeec
Q psy1534 239 DRLDG--------------PVRLPEGLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDK 304 (587)
Q Consensus 239 ~~~~~--------------~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (587)
..... ....-..+...++....+.+.|+..|..++.+.. ..+.. .
T Consensus 247 ~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s--------------------~kv~~-~ 305 (369)
T KOG0123|consen 247 SEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITS--------------------AKVMV-D 305 (369)
T ss_pred hhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceee--------------------EEEEe-c
Confidence 22111 0112234455677778888999999988887632 12222 3
Q ss_pred CCCCCCc-eeEecCCCCCCHHHHHHHHhcCCCCCCCCCCCC
Q psy1534 305 SSDENDA-ASVNTASKTDSTNAEKDKIGNLPNMNTNPTPTA 344 (587)
Q Consensus 305 ~~~~~~~-~fv~~~~~~~~~~~~~~ai~~l~g~~~~g~~~~ 344 (587)
..+.+.+ +||. |++++++.+|+..+++..+.++++.
T Consensus 306 ~~g~skG~gfV~----fs~~eeA~~A~~~~n~~~i~~k~l~ 342 (369)
T KOG0123|consen 306 ENGKSKGFGFVE----FSSPEEAKKAMTEMNGRLIGGKPLY 342 (369)
T ss_pred cCCCccceEEEE----cCCHHHHHHHHHhhChhhhcCCchh
Confidence 3445555 6999 9999999999999999999999987
No 26
>KOG0105|consensus
Probab=99.94 E-value=3e-25 Score=193.81 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|||+|||.++.|.||+++|.+||.|..|.|...+ ....||||+|+++.+|+.||..-+|..+.|..|+|++++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 36899999999999999999999999999999876533 2357999999999999999999999999999999988643
No 27
>KOG0117|consensus
Probab=99.93 E-value=7.7e-24 Score=208.70 Aligned_cols=190 Identities=20% Similarity=0.252 Sum_probs=158.2
Q ss_pred hhHHHHHHcCCCCCcccccc-CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCC-eEEEEEeeCC--CCCcceEEEEEECC
Q psy1534 7 ETELVEQIAHQDFPMFQRIE-TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGD-VTYVEILNDD--TGKPRGSAIVEFQS 81 (587)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~-V~~v~i~~d~--~g~skG~aFV~F~~ 81 (587)
+++|+..+++.++..-+++. .-.....+|||+|||.+.++++| +.|++.++ |++|.|..++ +.++||||||+|++
T Consensus 138 Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~ 217 (506)
T KOG0117|consen 138 AQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYES 217 (506)
T ss_pred HHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeec
Confidence 46677788888774332222 22246679999999999999999 88999997 8999998886 56789999999999
Q ss_pred HHHHHHHHHHhCC--ceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCC
Q psy1534 82 PDLVRKAVNKMHR--FETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLI 159 (587)
Q Consensus 82 ~e~A~~Al~~l~g--~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (587)
...|..|.+.|-. ..+-|..+.|.|+.++..-. .......
T Consensus 218 H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d--------------------------------------ed~ms~V 259 (506)
T KOG0117|consen 218 HRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD--------------------------------------EDTMSKV 259 (506)
T ss_pred chhHHHHHhhccCCceeecCCcceeeccCcccCCC--------------------------------------hhhhhhe
Confidence 9999999988765 55679999999999554210 0122235
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
+.|||+||+.++|||.|+++|++||.|+.|+.++| ||||+|.+.++|.+|++.+|+++|.|..|.|.+|++..
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 78999999999999999999999999999998876 99999999999999999999999999999999999876
Q ss_pred CC
Q psy1534 240 RL 241 (587)
Q Consensus 240 ~~ 241 (587)
++
T Consensus 333 k~ 334 (506)
T KOG0117|consen 333 KK 334 (506)
T ss_pred hh
Confidence 44
No 28
>KOG0146|consensus
Probab=99.93 E-value=7.3e-26 Score=208.42 Aligned_cols=81 Identities=26% Similarity=0.275 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCC------CeEEEEECCHHHHHHHHHHhCCCcccC
Q psy1534 506 RSMNQSSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKG------DIGLVRFDSEWTAKRAIDMMDRTRIDG 579 (587)
Q Consensus 506 ~~~~~~~~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~------g~g~v~f~~~~~a~~Ai~~l~g~~~~g 579 (587)
-...|++++++|+|||++||.+..+.||...|-+||.|++++|+.|| .+|||.|+++.+|+.||..|||+.|+-
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 35557899999999999999999999999999999999999997764 789999999999999999999999999
Q ss_pred ceEEEEE
Q psy1534 580 KIIDVTF 586 (587)
Q Consensus 580 ~~i~v~~ 586 (587)
+||+|.+
T Consensus 355 KRLKVQL 361 (371)
T KOG0146|consen 355 KRLKVQL 361 (371)
T ss_pred hhhhhhh
Confidence 9999864
No 29
>KOG0110|consensus
Probab=99.93 E-value=9.9e-25 Score=226.69 Aligned_cols=200 Identities=22% Similarity=0.279 Sum_probs=141.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..+.|+|+|||..+..++| ++|..||+|..|.+. +.| -.|+|+|.++.+|++|++.|....+...++.+.|+..
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 5567999999999999999 889999999999444 444 2499999999999999999999999999999999884
Q ss_pred ccCCCCCCC-CCCCCCCch-hhhhccC----CcccCCCCC--CChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHH
Q psy1534 110 DKGGRRNMG-GGGGVDRDL-SALLQNN----SSKFGNTYG--LSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFR 181 (587)
Q Consensus 110 ~~~~~~~~~-~~~~~~~~~-~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~ 181 (587)
......... .-....... ...+... .....+... ...... .........++|||.||+++++.++|..+|.
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a-~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLA-RVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccch-hhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 433211000 000000000 0000000 000000000 000000 0001112234499999999999999999999
Q ss_pred hcCCeeEEEEeeCCCCC----cceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 182 LAGKVENVEIALDKDGK----SRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 182 ~~G~i~~v~i~~~~~g~----~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
..|.|.+|.|.+.++.. +.|||||+|.++++|++|++.|+|+.|.|+.|.|+++.
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999998877533 45999999999999999999999999999999999987
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=1.1e-24 Score=232.70 Aligned_cols=78 Identities=27% Similarity=0.546 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
...++|||+|||+++++++|+++|++||.|.+|+|++|+. ++++|||||+|.+.++|++||+.|||..|.||+|+|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3468999999999999999999999999999999999985 99999999999999999999999999999999999973
No 31
>KOG4211|consensus
Probab=99.93 E-value=1.8e-23 Score=209.15 Aligned_cols=172 Identities=23% Similarity=0.268 Sum_probs=135.3
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
...+...-|=+++|||++|++|| ++|+-++ |+++.+.+ .+|+..|-|||+|.++|++++|++. +...+..|.|.|.
T Consensus 5 ~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 5 NEGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred cCCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 44556666778999999999999 8888886 67765554 4799999999999999999999976 8899999999999
Q ss_pred ecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCC-CCCCCcEEEEecCCCCCcHHHHHHHHHhcC
Q psy1534 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGI-NCPLINKVFVANLDYKVDEKKLREVFRLAG 184 (587)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 184 (587)
.+..++....- ..... .......|-+++||+.||++||.+||+..-
T Consensus 82 ~~~~~e~d~~~---------------------------------~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~ 128 (510)
T KOG4211|consen 82 TAGGAEADWVM---------------------------------RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLE 128 (510)
T ss_pred ccCCccccccc---------------------------------cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCc
Confidence 98744321100 00000 112345899999999999999999999874
Q ss_pred CeeE-EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 185 KVEN-VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 185 ~i~~-v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.|.. |.++.++.+++.|.|||.|++.+.|++|+.. |...|.-|-|.|-.+
T Consensus 129 Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 129 IVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred ccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4433 5677788899999999999999999999976 778888888888653
No 32
>KOG0109|consensus
Probab=99.92 E-value=4.3e-25 Score=206.22 Aligned_cols=151 Identities=21% Similarity=0.356 Sum_probs=140.2
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
..+|||+|||.++++.+| .+|++||+|.+|.|+++ ||||+.++...|+.||+.||+.+|+|..|.|+.++.+
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 468999999999999999 78999999999999975 9999999999999999999999999999999998855
Q ss_pred cCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEE
Q psy1534 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVE 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~ 190 (587)
.. .+++|+|+||.+.++.++|+..|++||.|.+|+
T Consensus 75 sk---------------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 75 SK---------------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred CC---------------------------------------------CccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 21 246899999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q psy1534 191 IALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241 (587)
Q Consensus 191 i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 241 (587)
|++| |+||.|+-.++|..|++.|+++++.|++++|.++..+-+.
T Consensus 110 ivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 110 IVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred eecc-------eeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 9975 9999999999999999999999999999999998777643
No 33
>KOG0145|consensus
Probab=99.92 E-value=4.6e-24 Score=195.89 Aligned_cols=235 Identities=20% Similarity=0.197 Sum_probs=170.4
Q ss_pred CCCchhHHHHHHcCCCCCcc------ccccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceE
Q psy1534 3 SPVTETELVEQIAHQDFPMF------QRIETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGS 74 (587)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~ 74 (587)
+|-++..|++.+++-.+..+ -|-.+..-...+|||++||..+|..|| .+|++||.|..-+|+.|. +|.+||.
T Consensus 92 ~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGV 171 (360)
T KOG0145|consen 92 RPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGV 171 (360)
T ss_pred ChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecce
Confidence 56677777887777655332 122233345568999999999999999 689999999999999997 9999999
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCC--eEEEEEecccccCCCCC--------CCCCCC-CCC----chhhhhccCCcccC
Q psy1534 75 AIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVEDKGGRRN--------MGGGGG-VDR----DLSALLQNNSSKFG 139 (587)
Q Consensus 75 aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~a~~~~~~~~~--------~~~~~~-~~~----~~~~~~~~~~~~~~ 139 (587)
+||.|...++|+.||+.|||.+-.| .+|.|+++........- ....+. +.. ...... .......
T Consensus 172 gFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~-~~~~~~~ 250 (360)
T KOG0145|consen 172 GFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLD-NLLNPHA 250 (360)
T ss_pred eEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccc-cccchhh
Confidence 9999999999999999999987665 78999998843221110 000000 000 000000 0000000
Q ss_pred CCCCCChhh---h-----hccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCH
Q psy1534 140 NTYGLSPQF---L-----ESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHP 210 (587)
Q Consensus 140 ~~~~~~~~~---~-----~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~ 210 (587)
.....+|.. + ...........+|||-||.++.+|.-|.++|.+||.|..|+|++|.+ .+++||+||.+.+.
T Consensus 251 ~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNY 330 (360)
T KOG0145|consen 251 AQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 330 (360)
T ss_pred hhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecch
Confidence 000000000 0 01111233468999999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 211 VEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 211 ~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
++|..||..|||..+.+|.|.|.+...+
T Consensus 331 dEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 331 DEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999997654
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.3e-23 Score=229.83 Aligned_cols=191 Identities=18% Similarity=0.176 Sum_probs=147.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+|||+|||+++++++| ++|++||+|..|.|+++. +|.++|||||+|.+.++|.+|++.|||..|.|++|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4578999999999999999 899999999999999996 99999999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhh-ccCCCCCCCcEEEEecCCCC--C--------cHHHHH
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLE-SLGINCPLINKVFVANLDYK--V--------DEKKLR 177 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~--~--------te~~l~ 177 (587)
......... .... ..... ........ .......++++|+|.||... + ..++|+
T Consensus 374 ~~~~~~~~~---------~~~~----~~~~~---~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~ 437 (509)
T TIGR01642 374 VGANQATID---------TSNG----MAPVT---LLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVK 437 (509)
T ss_pred cCCCCCCcc---------cccc----ccccc---cccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHH
Confidence 332111000 0000 00000 00000000 00112345789999999642 1 236899
Q ss_pred HHHHhcCCeeEEEEeeCC-C---CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 178 EVFRLAGKVENVEIALDK-D---GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 178 ~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
++|++||.|+.|.|+++. + +...|++||+|.+.++|++||..|||..|.|+.|.|.|...
T Consensus 438 ~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 438 TEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999863 2 45679999999999999999999999999999999998654
No 35
>KOG0127|consensus
Probab=99.91 E-value=2.1e-23 Score=209.94 Aligned_cols=208 Identities=22% Similarity=0.256 Sum_probs=152.8
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
.-+|.|+|||+.+...+| .+|+.||.|.+|.|++.++|+..|||||+|....+|.+|++.+|+..|.||+|-|.|+..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 568999999999999999 7899999999999998887777799999999999999999999999999999999999833
Q ss_pred cC-CCCC---------------------CCCCCCCCCchhhhhccCC-------------------cccCC--CCCCChh
Q psy1534 111 KG-GRRN---------------------MGGGGGVDRDLSALLQNNS-------------------SKFGN--TYGLSPQ 147 (587)
Q Consensus 111 ~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~-------------------~~~~~--~~~~~~~ 147 (587)
.. .... ..+......+......... ..... +....+.
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 21 1100 0000000000000000000 00000 0000000
Q ss_pred ----hhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHh--
Q psy1534 148 ----FLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML-- 220 (587)
Q Consensus 148 ----~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l-- 220 (587)
+.........-..+|||+|||+++||++|.+.|++||+|.++.|+.++. ++++|.|||.|.+..+|++||+.-
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0000111223358999999999999999999999999999999999996 999999999999999999999876
Q ss_pred ---CC-ceeCCeEEEEEEccCCC
Q psy1534 221 ---NN-QNLFERRITVRMDRVAD 239 (587)
Q Consensus 221 ---~g-~~~~g~~l~v~~a~~~~ 239 (587)
.+ ..|.||.|.|..+-.+.
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred cCCCceEEEeccEEeeeeccchH
Confidence 23 67889999999886654
No 36
>KOG0146|consensus
Probab=99.90 E-value=1.2e-23 Score=193.80 Aligned_cols=209 Identities=23% Similarity=0.378 Sum_probs=158.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC-ceeCC--eEEEEEe
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR-FETKG--RKLVIKE 106 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g-~~l~g--r~i~V~~ 106 (587)
+.++|||+-|...-.|+|+ .+|..||+|++|.+++.++|.+||||||.|.+.-+|..||..|+| ..+-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6689999999999999998 899999999999999999999999999999999999999999999 44544 7899999
Q ss_pred cccccCC--CCC--------------------------------------------------------------------
Q psy1534 107 AVEDKGG--RRN-------------------------------------------------------------------- 116 (587)
Q Consensus 107 a~~~~~~--~~~-------------------------------------------------------------------- 116 (587)
++.++.. |+-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 8843321 110
Q ss_pred -----C-C-CCCCC---CC----------chhhhhcc-------------------------------------------
Q psy1534 117 -----M-G-GGGGV---DR----------DLSALLQN------------------------------------------- 133 (587)
Q Consensus 117 -----~-~-~~~~~---~~----------~~~~~~~~------------------------------------------- 133 (587)
. . ....- .. ......+.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0 0 00000 00 00000000
Q ss_pred --CCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCH
Q psy1534 134 --NSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHP 210 (587)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~ 210 (587)
........+..++........+.+.+|+|||-.||.+..+.||.+.|-+||.|++.++..|+. +.+|+|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000000000111111222223567899999999999999999999999999999999999994 99999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 211 VEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 211 ~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
.+|+.||..|||..|+-++|+|.+.+++.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 99999999999999999999999988875
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=1.3e-21 Score=211.04 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=145.7
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+|||+|||.++++++| ++|++||.|..|.|++++ +|+++|||||+|.+.++|.+|++.|||..|.|++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3578999999999999999 899999999999999997 78999999999999999999999999999999999999976
Q ss_pred cccCCCCC--------C--CCCCC-CCCchhhh---------------hccC-----CcccCCC-------------CCC
Q psy1534 109 EDKGGRRN--------M--GGGGG-VDRDLSAL---------------LQNN-----SSKFGNT-------------YGL 144 (587)
Q Consensus 109 ~~~~~~~~--------~--~~~~~-~~~~~~~~---------------~~~~-----~~~~~~~-------------~~~ 144 (587)
........ . ..+.. ........ +... ...+... ...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 22111000 0 00000 00000000 0000 0000000 000
Q ss_pred Chhhhh---ccCCCCCCCcEEEEecCCCCCc----------HHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHH
Q psy1534 145 SPQFLE---SLGINCPLINKVFVANLDYKVD----------EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPV 211 (587)
Q Consensus 145 ~~~~~~---~~~~~~~~~~~l~V~nLp~~~t----------e~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 211 (587)
...... .......+.++|+|.||....+ .+||++.|++||.|++|.|... ...|++||+|.+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e 421 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVD 421 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHH
Confidence 000000 0000235678999999955433 3689999999999999998743 35799999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 212 EAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 212 ~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
+|.+|++.|||+.|.|+.|.|.+....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999999999999999999999986543
No 38
>KOG0144|consensus
Probab=99.88 E-value=2.6e-22 Score=196.94 Aligned_cols=210 Identities=20% Similarity=0.321 Sum_probs=157.3
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC-ceeCC--eEEEEE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR-FETKG--RKLVIK 105 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g-~~l~g--r~i~V~ 105 (587)
+.+++|||+-|+..++|.|+ ++|++||.|++|.|++|+.+.|||||||+|.+.|.|..||+.||+ .++.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 56889999999999999999 899999999999999999999999999999999999999999999 44554 899999
Q ss_pred ecccccCCCCC-------------CCCC--------------------------CC---C------CCc-----------
Q psy1534 106 EAVEDKGGRRN-------------MGGG--------------------------GG---V------DRD----------- 126 (587)
Q Consensus 106 ~a~~~~~~~~~-------------~~~~--------------------------~~---~------~~~----------- 126 (587)
+++.++.+..+ +++. .. . ...
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 99944322110 0000 00 0 000
Q ss_pred --------------h------hh-----hhcc---------------------------CCcccC-------CC------
Q psy1534 127 --------------L------SA-----LLQN---------------------------NSSKFG-------NT------ 141 (587)
Q Consensus 127 --------------~------~~-----~~~~---------------------------~~~~~~-------~~------ 141 (587)
. .. .+.. .+..+. ..
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 0 00 0000 000000 00
Q ss_pred --------CCCChhh-------------------------------------hhccCCCCCCCcEEEEecCCCCCcHHHH
Q psy1534 142 --------YGLSPQF-------------------------------------LESLGINCPLINKVFVANLDYKVDEKKL 176 (587)
Q Consensus 142 --------~~~~~~~-------------------------------------~~~~~~~~~~~~~l~V~nLp~~~te~~l 176 (587)
.+..+.. ......+.+.+..|||.+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 0000000 0000113567889999999999999999
Q ss_pred HHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 177 REVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 177 ~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
-..|..||.|++.++..|+ ++-++.|+||.|++..+|.+||..|||..|..++++|...+.+.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999999999999998 59999999999999999999999999999999999999887665
No 39
>KOG0110|consensus
Probab=99.87 E-value=6.4e-22 Score=205.91 Aligned_cols=175 Identities=23% Similarity=0.388 Sum_probs=148.9
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTG----KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g----~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
.+.+|||+||++++|.++| .+|.+.|.|.+|.|.+.++. .|.|||||+|.++++|+.|++.|+|+.|.|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999 78999999999998877644 366999999999999999999999999999999999
Q ss_pred ecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q psy1534 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185 (587)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 185 (587)
++..+..... + .........++|+|+|||+..+..+++++|..||.
T Consensus 594 ~S~~k~~~~~-----------------------g-----------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq 639 (725)
T KOG0110|consen 594 ISENKPASTV-----------------------G-----------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ 639 (725)
T ss_pred eccCcccccc-----------------------c-----------cccccccccceeeeeccchHHHHHHHHHHHhcccc
Confidence 9982221000 0 00001122579999999999999999999999999
Q ss_pred eeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 186 VENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 186 i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
|.+|+|++... +-++|||||+|-++.+|.+|++.|..+.++||.|.++|+....
T Consensus 640 lksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 640 LKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999998743 7789999999999999999999999999999999999987664
No 40
>KOG4205|consensus
Probab=99.86 E-value=1e-21 Score=193.56 Aligned_cols=175 Identities=23% Similarity=0.344 Sum_probs=152.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+|||++|+++++++.| ++|+.||+|.+|.+++|+ +++++||+||+|++++...+++.. ..+.|.++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 6789999999999999999 889999999999999998 999999999999999999999954 6788999999999998
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
+....... .......+|||+.||.++++++++++|++||.|..
T Consensus 84 ~r~~~~~~-------------------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~ 126 (311)
T KOG4205|consen 84 SREDQTKV-------------------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD 126 (311)
T ss_pred Cccccccc-------------------------------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEe
Confidence 54321110 01113679999999999999999999999999999
Q ss_pred EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCCC
Q psy1534 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRLDGP 244 (587)
Q Consensus 189 v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~~~~ 244 (587)
+.++.|.+ .+++||+||.|.+++.+++++. ..-+.|+++.+.|+.|.++......
T Consensus 127 ~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 127 VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 99999986 9999999999999999999885 4788999999999999888754433
No 41
>KOG0109|consensus
Probab=99.85 E-value=6.1e-21 Score=178.54 Aligned_cols=68 Identities=35% Similarity=0.470 Sum_probs=65.5
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.+|+|.||.+.++-+||+..|.+||.|+.|+|.++ ++||.|+-.++|..||+.||+.+|.|+++.|.+
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc--eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 38999999999999999999999999999999988 999999999999999999999999999999975
No 42
>KOG0105|consensus
Probab=99.83 E-value=2e-19 Score=157.56 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=135.6
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
...+|||+|||.++.+.|| ++|.+||.|.+|.|...+ + ...||||+|+++.+|+.||..-+|..+.|..|+|+++.-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-C-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 5678999999999999999 789999999999876432 2 247999999999999999999999999999999999882
Q ss_pred ccC--CCCC---CCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcC
Q psy1534 110 DKG--GRRN---MGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184 (587)
Q Consensus 110 ~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 184 (587)
-.. .+.. +++..+........++....+ ..|.|.+||.+.+|+||++...+.|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe----------------------~RVvVsGLp~SgSWQDLKDHmReaG 140 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSE----------------------YRVVVSGLPPSGSWQDLKDHMREAG 140 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccc----------------------eeEEEecCCCCCchHHHHHHHHhhC
Confidence 221 1111 111111222222223333333 4899999999999999999999999
Q ss_pred CeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEE
Q psy1534 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF--ERRITVRM 234 (587)
Q Consensus 185 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~ 234 (587)
.|....+.+| |++.|+|...|+.+-|+..|+...+. |....+.+
T Consensus 141 dvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 141 DVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred Ceeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 9999999886 58999999999999999999887764 55544444
No 43
>KOG1190|consensus
Probab=99.82 E-value=1.1e-18 Score=170.41 Aligned_cols=198 Identities=17% Similarity=0.122 Sum_probs=130.8
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR--FETKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g--~~l~gr~i~V 104 (587)
.....+-|.++|||++++|+|| +++.+||+|+.+.+++- +..||++|.+.++|..-+..... -.+.+++|.|
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCcceee
Confidence 3446677899999999999998 99999999999988875 45899999999999885543332 4467999999
Q ss_pred EecccccCCCCCCCC-CCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhc
Q psy1534 105 KEAVEDKGGRRNMGG-GGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLA 183 (587)
Q Consensus 105 ~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~ 183 (587)
+++............ .++. ... ...........................+--+++|.|+-+-++-+-|.++|++|
T Consensus 99 q~sn~~~lkt~s~p~q~r~~-~vy---~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~f 174 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQ-AVY---QAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKF 174 (492)
T ss_pred hhhhHHHHhccCchhhhhhh-hHH---hhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhc
Confidence 998743322111000 0000 000 00000000000000000011111122234567899999999999999999999
Q ss_pred CCeeEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 184 GKVENVEIALDKDGKSRGF-GTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 184 G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
|.|.+|.-.... .+| |.|.|.+.+.|..|...|+|+.|..-.+.+++...+
T Consensus 175 G~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 175 GFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred ceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 999888655432 344 899999999999999999999998665566555444
No 44
>KOG0131|consensus
Probab=99.81 E-value=2.1e-19 Score=157.61 Aligned_cols=79 Identities=37% Similarity=0.491 Sum_probs=74.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
...+|||+||+..++++-|.++|-+.|.|++++|++|+. ..++|||||+|.++|+|+-||+.||..++.||+|+|+.+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 457999999999999999999999999999999999995 7899999999999999999999999999999999998765
No 45
>KOG4211|consensus
Probab=99.79 E-value=1.7e-17 Score=166.59 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=112.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
....|-+++|||++|++||.+||+.+ .|+++.+.+. +|++.|-|||+|.+.|++++|+++ +...+..|.|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc-CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 34578899999999999999999999 5888666553 589999999999999999999965 88888999999988766
Q ss_pred CCCCCCCCCCC------C-CcccccCCCCCCCchHHHHHHhhhccccceeEEEEeccCccceeeeeceeeeeecCCCCCC
Q psy1534 238 ADRLDGPVRLP------E-GLKSIGMGLGANGAPLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDEND 310 (587)
Q Consensus 238 ~~~~~~~~~~~------~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (587)
.+.....++.. . -++-+|||++|+++++.++|..|..+.. -+. ...+...++.
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~--gi~------------------l~~d~rgR~t 145 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD--GIL------------------LPMDQRGRPT 145 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCccccc--cee------------------eeccCCCCcc
Confidence 65433222221 1 1234899999999999999988766422 000 1223344455
Q ss_pred c-eeEecCCCCCCHHHHHHHHhcC
Q psy1534 311 A-ASVNTASKTDSTNAEKDKIGNL 333 (587)
Q Consensus 311 ~-~fv~~~~~~~~~~~~~~ai~~l 333 (587)
+ +||. |.+.+.+++|++..
T Consensus 146 GEAfVq----F~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 146 GEAFVQ----FESQESAEIALGRH 165 (510)
T ss_pred cceEEE----ecCHHHHHHHHHHH
Confidence 5 6999 88888999998743
No 46
>KOG1190|consensus
Probab=99.77 E-value=1e-16 Score=156.87 Aligned_cols=195 Identities=17% Similarity=0.236 Sum_probs=136.1
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEecc--
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAV-- 108 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~a~-- 108 (587)
+++|.++-+.++.+.| .+|++||.|..|.-.....+ -.|+|+|.+.+.|+.|...|+|+.|.. ..|+|.++.
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 6889999999999999 88999999999866654333 359999999999999999999998875 566666665
Q ss_pred --------cc--cCCCCCCCCCCCCCCchhhhhccCCcccC-------CCCCCCh----hhhhccCCCCC-CCcEEEEec
Q psy1534 109 --------ED--KGGRRNMGGGGGVDRDLSALLQNNSSKFG-------NTYGLSP----QFLESLGINCP-LINKVFVAN 166 (587)
Q Consensus 109 --------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~-~~~~l~V~n 166 (587)
.+ .+.++.-..+.+.. .........+. .....+. .....-....+ ..+.|-|.|
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p----~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQP----SLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred cceeeccccccccccCCCCCCCcccc----ccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 11 11111111110000 00000000110 0011111 11111011111 258899999
Q ss_pred CCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 167 LDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 167 Lp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
|.. .+|++.|..+|.-||+|.+|+|+.++ +--|.|.|.+...|+-|++.|+|+.|.|++|+|.+++...
T Consensus 305 ln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 976 59999999999999999999999876 3469999999999999999999999999999999987665
No 47
>KOG0124|consensus
Probab=99.77 E-value=2.1e-18 Score=165.72 Aligned_cols=75 Identities=28% Similarity=0.562 Sum_probs=72.5
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
-|+|||+.|.+.+.|+.|+..|.+||.|.+|.+-+|+ +++++|||||+|+-+|.|+-|++.|||..++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 5899999999999999999999999999999999999 49999999999999999999999999999999999986
No 48
>KOG0147|consensus
Probab=99.77 E-value=3.7e-18 Score=173.58 Aligned_cols=199 Identities=17% Similarity=0.212 Sum_probs=138.2
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
+|||+||..++++++| .+|+.||.|+.|.+.+|. ||++|||+||+|.+.++|++|++.|||.+|.||.|+|.....+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 3999999999999999 789999999999999996 99999999999999999999999999999999999998876222
Q ss_pred CCCC--------C----CCCC--CCC-CCchhhhhccCCcccCCCC--------CCChhhhhc------cCCCC------
Q psy1534 112 GGRR--------N----MGGG--GGV-DRDLSALLQNNSSKFGNTY--------GLSPQFLES------LGINC------ 156 (587)
Q Consensus 112 ~~~~--------~----~~~~--~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~------~~~~~------ 156 (587)
.... + .+-. .++ ....+...+......-.+. .+....... ...+.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 1110 0 0000 000 0011111110000000000 000000000 00111
Q ss_pred -CCCcEEEEecC--CCCCcH--------HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy1534 157 -PLINKVFVANL--DYKVDE--------KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225 (587)
Q Consensus 157 -~~~~~l~V~nL--p~~~te--------~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 225 (587)
.++.++.+.|+ |...|+ +|+.+.|.+||.|.+|.+-+. +-|+.||.|.+.+.|..|+.+|||++|
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhh
Confidence 44556667776 222222 688899999999999888664 349999999999999999999999999
Q ss_pred CCeEEEEEEcc
Q psy1534 226 FERRITVRMDR 236 (587)
Q Consensus 226 ~g~~l~v~~a~ 236 (587)
.|+.|+++|-.
T Consensus 516 ~gr~Ita~~~~ 526 (549)
T KOG0147|consen 516 AGRMITAKYLP 526 (549)
T ss_pred ccceeEEEEee
Confidence 99999999853
No 49
>KOG4206|consensus
Probab=99.74 E-value=9.6e-17 Score=146.93 Aligned_cols=194 Identities=18% Similarity=0.254 Sum_probs=143.9
Q ss_pred cEEEcCCCCCCCHHHH-H----hcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 34 PVVMDLIQGDASLYQI-S----HLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~----~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+|||.||...+..++| + +|++||+|.+|...+ +.+.||.|||.|.+.+.|..|++.|+|..|.|++++|+++.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 9999999999999988 3 799999999987654 56789999999999999999999999999999999999998
Q ss_pred cccCC--CCCC------CCCCCCCCchhhhhccCCcccC--CCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHH
Q psy1534 109 EDKGG--RRNM------GGGGGVDRDLSALLQNNSSKFG--NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLRE 178 (587)
Q Consensus 109 ~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~ 178 (587)
.+..- +..+ .....+.......+......+. .....++++ .....++...||+.|||..++.+.|..
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~---~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF---LAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc---cccCCCCceEEEEecCCcchhHHHHHH
Confidence 44321 1110 0000000000000000001110 111122222 133567889999999999999999999
Q ss_pred HHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q psy1534 179 VFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF-ERRITVRMDR 236 (587)
Q Consensus 179 ~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~a~ 236 (587)
+|..|....+|+++... ++.|||+|.+...|..|...+.+..|. ...+.|.+++
T Consensus 166 lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999888754 679999999999999999999998886 7778777654
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.8e-17 Score=145.77 Aligned_cols=93 Identities=18% Similarity=0.314 Sum_probs=82.2
Q ss_pred CccccccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCcee
Q psy1534 20 PMFQRIETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l 97 (587)
|......+......+|||+|||+++++++| ++|++||+|++|+|++|+ ++++||||||+|.+.++|++|++.||+..|
T Consensus 22 ~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 22 PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred ccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 333334444556779999999999999999 899999999999999997 999999999999999999999999999999
Q ss_pred CCeEEEEEecccccC
Q psy1534 98 KGRKLVIKEAVEDKG 112 (587)
Q Consensus 98 ~gr~i~V~~a~~~~~ 112 (587)
.|++|+|.++..+..
T Consensus 102 ~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 102 NGRHIRVNPANDRPS 116 (144)
T ss_pred CCEEEEEEeCCcCCC
Confidence 999999999985543
No 51
>KOG4307|consensus
Probab=99.70 E-value=1e-15 Score=158.38 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=110.0
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEE-EEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTY-VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~-v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...-|||..||..+++.++ ++|.+--.|++ |.|-+.++++-++.|||+|..++++.+|...-+.+.++.|.|+|....
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 4457999999999999988 89998888888 767677899999999999999999999987666777888999999876
Q ss_pred cccC-CCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhh-ccCCCCCCCcEEEEecCC-CCCcHHHHHHHHHhcCC
Q psy1534 109 EDKG-GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLE-SLGINCPLINKVFVANLD-YKVDEKKLREVFRLAGK 185 (587)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~ 185 (587)
++.. .+.. ............++. +..+. ..........+-.+.+.+ ++.+.-+.+.+-. +.
T Consensus 513 ~~~m~~ek~-------~~~~~~lq~~~~dqr-------e~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~--~~ 576 (944)
T KOG4307|consen 513 DYAMMMEKN-------GEQGIKLQQSDKDQR-------ETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENT--SP 576 (944)
T ss_pred hHHHHHHHh-------HHHHHHHhhhhhHHH-------HHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhc--CC
Confidence 3322 0000 000000000000000 00000 000000001122344555 4666555554433 23
Q ss_pred ee---EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy1534 186 VE---NVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229 (587)
Q Consensus 186 i~---~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 229 (587)
+. .+.+.+|..+++++-+||.|.+...+.+-+. ++-..+.+++
T Consensus 577 ~~~~n~~p~~~dN~~~~~~~~~v~~~n~p~~r~~~~-~~~~~vnn~p 622 (944)
T KOG4307|consen 577 IRSPNRSPLRRDNRDRSRSRSPVRRRNSPRRREEHT-RWCVQVNNVP 622 (944)
T ss_pred ccCccccccccccCCcccccCccccCCCccccchhh-hhhhcccCcc
Confidence 32 3456667668888889999998777766552 2334444444
No 52
>KOG1456|consensus
Probab=99.70 E-value=1.2e-14 Score=140.73 Aligned_cols=165 Identities=18% Similarity=0.240 Sum_probs=128.0
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHH--HhCCceeCCeEEEEEe
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVN--KMHRFETKGRKLVIKE 106 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~--~l~g~~l~gr~i~V~~ 106 (587)
+...-|.|++|-..++|.+| +..+.||+|..|..+.. +..|.|+|++.+.|+.|+. +-+...+.|+.-.+.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 34556899999999999999 89999999999988764 5689999999999999984 2234667888888888
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEE--EecCCCCCcHHHHHHHHHhcC
Q psy1534 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF--VANLDYKVDEKKLREVFRLAG 184 (587)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nLp~~~te~~l~~~F~~~G 184 (587)
+..+...|.. .++..+.+.|. |-|--+.+|-+-|..++...|
T Consensus 104 Stsq~i~R~g------------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~G 147 (494)
T KOG1456|consen 104 STSQCIERPG------------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQG 147 (494)
T ss_pred chhhhhccCC------------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCC
Confidence 8755443321 00112233444 345456799999999999999
Q ss_pred CeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEccCCC
Q psy1534 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDRVAD 239 (587)
Q Consensus 185 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~~~~ 239 (587)
+|.+|.|++. +| --|.|+|++.+.|++|...|||..|+. ++|+|++|++..
T Consensus 148 kVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 148 KVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 9999999985 22 259999999999999999999999873 567788877654
No 53
>KOG1548|consensus
Probab=99.70 E-value=6.3e-16 Score=148.65 Aligned_cols=199 Identities=20% Similarity=0.234 Sum_probs=144.1
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEE--------EEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTY--------VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~--------v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
..|||.|||.++|.+++ ++|++||-|.. |+|.++..|..||-|+|.|...|+++.|++.|++..|.|+.|+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 35999999999999999 89999998874 8999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCCCCC-CCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCC----CCCc------
Q psy1534 104 IKEAVEDKGGRRNMGGGG-GVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLD----YKVD------ 172 (587)
Q Consensus 104 V~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp----~~~t------ 172 (587)
|+.|.-...+...-.... +.............. .+++.+... ........++|.+.|+= ...+
T Consensus 215 VerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k----~~dw~pd~~--~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 215 VERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQK----LLDWRPDRD--DPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred EehhhhhhccCcCcccccccccccHHHHHHHHHh----hcccCCCcc--ccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 999982222111100000 000111111100001 111111110 01122346789999972 1223
Q ss_pred -HHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q psy1534 173 -EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240 (587)
Q Consensus 173 -e~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~ 240 (587)
.++|++-+++||.|.+|.|.-. .+.|.+-|.|.+.++|..||+.|+|+.+.||.|...+...+.+
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 3678888999999999987643 3578999999999999999999999999999999998766653
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=6.8e-16 Score=137.75 Aligned_cols=85 Identities=29% Similarity=0.524 Sum_probs=79.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||++++|++|+++|++||.|.+|.|++|+. ++++|||||+|.+.++|++||+.||++.|.|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876654
No 55
>KOG4212|consensus
Probab=99.68 E-value=7.5e-16 Score=151.66 Aligned_cols=82 Identities=32% Similarity=0.557 Sum_probs=76.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHh-cCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.+.+||.|||+++.|+||+++|.+ .|+|+.|.++.|.+|+++|||.|+|+++|.+++|++.||.+.+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 456999999999999999999975 8999999999999999999999999999999999999999999999999988766
Q ss_pred CCC
Q psy1534 238 ADR 240 (587)
Q Consensus 238 ~~~ 240 (587)
..+
T Consensus 124 ~q~ 126 (608)
T KOG4212|consen 124 EQR 126 (608)
T ss_pred hhh
Confidence 543
No 56
>KOG0106|consensus
Probab=99.68 E-value=1.2e-16 Score=148.13 Aligned_cols=69 Identities=29% Similarity=0.685 Sum_probs=63.5
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEE
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVT 585 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~ 585 (587)
+.++++|.+|+..+.|+||+++|.++|++.+... .++++||+|.++++|.+||..|++..+.+++|+|.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3689999999999999999999999999966655 45799999999999999999999999999999884
No 57
>KOG0106|consensus
Probab=99.65 E-value=2.6e-16 Score=145.84 Aligned_cols=165 Identities=27% Similarity=0.382 Sum_probs=132.4
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
.+|||++||+.+.+.+| ++|.+||.|.+|.+.. ||+||+|.+..+|..|+..||+..|.+-.+.|.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 57999999999999999 6899999999997764 899999999999999999999999999888888888544
Q ss_pred CCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEE
Q psy1534 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEI 191 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 191 (587)
..+.. +.++....|. .....+....+.++|.+++..+.+.+|.+.|.++|.+....+
T Consensus 75 ~~~g~---~~~g~r~~~~--------------------~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~ 131 (216)
T KOG0106|consen 75 RGRGR---PRGGDRRSDS--------------------RRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA 131 (216)
T ss_pred cccCC---CCCCCccchh--------------------hccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh
Confidence 33311 0110000000 011112334678999999999999999999999999855554
Q ss_pred eeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 192 ALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 192 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
. ++++||+|++.++|.+|++.|++..+.++.|.+..
T Consensus 132 ~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 R-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred h-------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 2 56899999999999999999999999999999944
No 58
>KOG1456|consensus
Probab=99.62 E-value=1e-12 Score=127.44 Aligned_cols=201 Identities=21% Similarity=0.224 Sum_probs=138.8
Q ss_pred CCCCcEE---EcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC--eEEE
Q psy1534 30 PLEVPVV---MDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLV 103 (587)
Q Consensus 30 ~~~~~vf---V~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~ 103 (587)
...++|. |-|--+.+|.+.| .+....|+|.+|.|++. +| =.|.|||++.+.|++|.+.|||..|.. ..|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 3444444 4566788999999 88999999999988875 55 369999999999999999999988873 7888
Q ss_pred EEecccccCC--C--------------CCCCCCCCC-CCchh-hhhccCCcccCC-------------CCCCChhhhhc-
Q psy1534 104 IKEAVEDKGG--R--------------RNMGGGGGV-DRDLS-ALLQNNSSKFGN-------------TYGLSPQFLES- 151 (587)
Q Consensus 104 V~~a~~~~~~--~--------------~~~~~~~~~-~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~- 151 (587)
|+++++.+.. + .....+++. .+... .-....+..|+. ....+......
T Consensus 193 IeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~ 272 (494)
T KOG1456|consen 193 IEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGY 272 (494)
T ss_pred EEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccc
Confidence 9988832210 0 000011110 00000 000001111110 00011111000
Q ss_pred -------cCCCCCCCcEEEEecCCCC-CcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc
Q psy1534 152 -------LGINCPLINKVFVANLDYK-VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ 223 (587)
Q Consensus 152 -------~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~ 223 (587)
......+++.+.|-+|... ++-+.|..+|..||.|++|++++.+ .|-|.|++.+..+.++|+..||+.
T Consensus 273 ~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 273 RDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccC
Confidence 0123567899999999975 7778899999999999999999986 578999999999999999999999
Q ss_pred eeCCeEEEEEEccCC
Q psy1534 224 NLFERRITVRMDRVA 238 (587)
Q Consensus 224 ~~~g~~l~v~~a~~~ 238 (587)
.+-|.+|.|.+++..
T Consensus 349 ~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQN 363 (494)
T ss_pred ccccceEEEeecccc
Confidence 999999999887654
No 59
>KOG4205|consensus
Probab=99.60 E-value=2.7e-15 Score=148.29 Aligned_cols=81 Identities=27% Similarity=0.460 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
..++|||++|+|+++++.|++.|+.||+|.+|.+++|+. ++++||+||+|++++...++|.. .-+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 357999999999999999999999999999999999996 99999999999999988888754 5678899998887765
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
+..
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 554
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=5.4e-15 Score=115.41 Aligned_cols=69 Identities=23% Similarity=0.469 Sum_probs=66.6
Q ss_pred EEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 35 VVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 35 vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
|||+|||.++++++| ++|++||+|..++++.+.++.++++|||+|.+.++|++|++.|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999 899999999999999988889999999999999999999999999999999985
No 61
>KOG1457|consensus
Probab=99.59 E-value=3.5e-14 Score=128.53 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=127.4
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeC-C-CCCcceEEEEEECCHHHHHHHHHHhCCceeC---CeEEEE
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILND-D-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETK---GRKLVI 104 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d-~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~---gr~i~V 104 (587)
.-++|||.+||.|+.-.|| .+|..|---+.+.|... + ....+-+|||+|.+..+|..|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3578999999999999999 88999887777766554 3 3346689999999999999999999999997 789999
Q ss_pred EecccccC-CCCCCCCCCCCC----Cchhhhhcc------------CCccc---CC---------CCC--------CCh-
Q psy1534 105 KEAVEDKG-GRRNMGGGGGVD----RDLSALLQN------------NSSKF---GN---------TYG--------LSP- 146 (587)
Q Consensus 105 ~~a~~~~~-~~~~~~~~~~~~----~~~~~~~~~------------~~~~~---~~---------~~~--------~~~- 146 (587)
+.++.... .+.+..+..+.. .+....... .+... .. ++. +.|
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 99883222 222222111100 000000000 00000 00 000 000
Q ss_pred -----hhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy1534 147 -----QFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221 (587)
Q Consensus 147 -----~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 221 (587)
+.............+|||.||..+++|++|+.+|+.|-....++|.. +.| ...||++|++.+.|..|+..|+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHhh
Confidence 00000111223457899999999999999999999997655555432 223 3479999999999999999999
Q ss_pred CceeC
Q psy1534 222 NQNLF 226 (587)
Q Consensus 222 g~~~~ 226 (587)
|..|.
T Consensus 270 g~~~s 274 (284)
T KOG1457|consen 270 GNLLS 274 (284)
T ss_pred cceec
Confidence 87764
No 62
>KOG1365|consensus
Probab=99.59 E-value=8.4e-15 Score=142.17 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=115.1
Q ss_pred EEEcCCCCCCCHHHHHhcccCCCeEE-EEEee-CCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccccC
Q psy1534 35 VVMDLIQGDASLYQISHLSTVGDVTY-VEILN-DDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKG 112 (587)
Q Consensus 35 vfV~nlp~~~t~~~l~~F~~~G~V~~-v~i~~-d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~ 112 (587)
|-.++|||..+..+|..|-+-=.|.. -..+. ...|+..|++.|.|.++|.-+.|++. +...+.+|.|.|-.+.-.+.
T Consensus 63 vRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~f 141 (508)
T KOG1365|consen 63 VRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEEF 141 (508)
T ss_pred EEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchhh
Confidence 34578999999999954322222222 12222 23677779999999999999999987 88889999999998874443
Q ss_pred CCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhc----CCeeE
Q psy1534 113 GRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLA----GKVEN 188 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~ 188 (587)
-...++... ....| . +...--.|.+++||+++++.|+.++|.+- |..+.
T Consensus 142 ~~iagg~s~------------e~~~f----------l-----sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~eg 194 (508)
T KOG1365|consen 142 LKIAGGTSN------------EAAPF----------L-----SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEG 194 (508)
T ss_pred eEecCCccc------------cCCCC----------C-----CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccc
Confidence 222111000 00000 0 00112357788999999999999999632 34577
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy1534 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230 (587)
Q Consensus 189 v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 230 (587)
|.+++.++|+..|-|||.|..+++|+.||.+ |...|+-|.|
T Consensus 195 vLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 195 VLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred eEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 8888878899999999999999999999976 5555554443
No 63
>KOG0120|consensus
Probab=99.56 E-value=5.9e-14 Score=145.35 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=138.1
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccC-----------C-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCcee
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTV-----------G-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~-----------G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l 97 (587)
..+++||+++|..++++.. .+|..- | .|..|.|-.. +.|||++|.+.++|..|+ .+++..+
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~-----~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE-----KNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc-----ccceeEEecCCCchhhhh-cccchhh
Confidence 4558999999999999987 455332 3 3777776554 689999999999999999 5689999
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHH
Q psy1534 98 KGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLR 177 (587)
Q Consensus 98 ~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~ 177 (587)
.|+++++........... ..... .....+...+ .........+++||++||..+++..++
T Consensus 248 ~g~~~~~~r~~d~~~~p~-----------~~~~~-~~~~~~~~~~--------~~t~~~~~~~ki~v~~lp~~l~~~q~~ 307 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPG-----------ITLSP-SQLGKVGLLP--------ASTDVPDSPNKIFVGGLPLYLTEDQVK 307 (500)
T ss_pred CCCCceecccccccCCcc-----------chhhh-ccccccCCcc--------cccCcccccchhhhccCcCccCHHHHH
Confidence 999998876552210000 00000 0000000000 011123345789999999999999999
Q ss_pred HHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q psy1534 178 EVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240 (587)
Q Consensus 178 ~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~ 240 (587)
++...||.+....+..+.. |.++||||.+|.++.....|+..|||..+.+++|.|..|-....
T Consensus 308 Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 308 ELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred HHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 9999999999999999986 89999999999999999999999999999999999998876653
No 64
>KOG0120|consensus
Probab=99.55 E-value=2.1e-14 Score=148.62 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=146.5
Q ss_pred CccccccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCcee
Q psy1534 20 PMFQRIETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97 (587)
Q Consensus 20 ~~~~~~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l 97 (587)
+...+.........++||++||...++.++ |+.+.||++....++.|. +|.+|||||.+|.++-....|++.|||+.+
T Consensus 277 ~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 277 GLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred CCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh
Confidence 344455556667889999999999999998 899999999999999996 899999999999999999999999999999
Q ss_pred CCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCC-CChhhh-hccCCCCCCCcEEEEecC--CCCC-c
Q psy1534 98 KGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYG-LSPQFL-ESLGINCPLINKVFVANL--DYKV-D 172 (587)
Q Consensus 98 ~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~V~nL--p~~~-t 172 (587)
++++|.|+.+......-. .+.+... ..+... ........++..|.+.|+ |.++ +
T Consensus 357 gd~~lvvq~A~~g~~~~~---------------------~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkd 415 (500)
T KOG0120|consen 357 GDKKLVVQRAIVGASNAN---------------------VNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKD 415 (500)
T ss_pred cCceeEeehhhccchhcc---------------------ccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcc
Confidence 999999999883321100 0000000 000000 000112334445555553 1111 1
Q ss_pred H-------HHHHHHHHhcCCeeEEEEeeC-CC---CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 173 E-------KKLREVFRLAGKVENVEIALD-KD---GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 173 e-------~~l~~~F~~~G~i~~v~i~~~-~~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+ |+++..|.+||.|..|.|+++ .+ ....|..||+|.+.+++++|+++|+|.++.+|.|...|-..
T Consensus 416 d~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 416 DEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred hHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 1 467778889999999999998 43 44567899999999999999999999999999999988544
No 65
>KOG0125|consensus
Probab=99.55 E-value=1e-14 Score=139.30 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=75.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...+++|+|+|||+...+.|| .+|++||+|.+|.|+.++.| ||||+||+|++++||++|.++|||..+.||+|.|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 346789999999999999999 78999999999999999877 8999999999999999999999999999999999999
Q ss_pred cc
Q psy1534 108 VE 109 (587)
Q Consensus 108 ~~ 109 (587)
..
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 83
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=3.7e-14 Score=110.67 Aligned_cols=70 Identities=33% Similarity=0.619 Sum_probs=67.3
Q ss_pred EEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 162 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
|||+|||+++++++|+++|++||.|..+.+..+..++.+++|||+|.+.++|++|++.|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999987789999999999999999999999999999999885
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=1e-13 Score=108.26 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 35 VVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 35 vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
|||+|||+++++++| ++|+.||.|..|++..+++++++++|||+|.++++|++|++.+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999 899999999999999997789999999999999999999999999999999885
No 68
>KOG0107|consensus
Probab=99.51 E-value=3e-14 Score=124.64 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
....+|||+||+.++++.|| ..|.+||+|.+|+|.+. ..|||||||+++.||+.|+..|+|..|+|..|+|+.+.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35789999999999999999 57999999999999986 36899999999999999999999999999999999998
No 69
>KOG4206|consensus
Probab=99.51 E-value=1.6e-12 Score=119.40 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=72.8
Q ss_pred CCcEEEEecCCCCCcHHHHHH----HHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLRE----VFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
+..+|||.||...+..++|++ +|++||.|..|...+. .+.+|-|||.|.+.+.|-.|+..|+|..+.|++++|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 344999999999999999988 9999999999887754 4678999999999999999999999999999999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
||+.+.
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 998775
No 70
>KOG0149|consensus
Probab=99.51 E-value=1.9e-14 Score=132.06 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=72.1
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
-.-.||||++|+|++..++| ++|++||+|++..|+.|+ +|+||||+||+|.+.|.|++|++. ..-.|+||+..|..+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 34568999999999999999 899999999999999998 999999999999999999999976 567799999999988
Q ss_pred c
Q psy1534 108 V 108 (587)
Q Consensus 108 ~ 108 (587)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 7
No 71
>KOG1457|consensus
Probab=99.50 E-value=8.4e-13 Score=119.67 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeC---CeEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLNNQNLF---ERRITV 232 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~v 232 (587)
..++|||.+||.++...+|..+|..|-.-+.+.|..... ...+-+|||+|.+..+|..|+..|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 468999999999999999999999987777777665443 345579999999999999999999999986 889999
Q ss_pred EEccCCCCCCCCC
Q psy1534 233 RMDRVADRLDGPV 245 (587)
Q Consensus 233 ~~a~~~~~~~~~~ 245 (587)
++++...+..+.+
T Consensus 113 ElAKSNtK~kr~k 125 (284)
T KOG1457|consen 113 ELAKSNTKRKRRK 125 (284)
T ss_pred eehhcCcccccCC
Confidence 9998887654433
No 72
>KOG0126|consensus
Probab=99.49 E-value=7.6e-15 Score=128.78 Aligned_cols=105 Identities=14% Similarity=0.249 Sum_probs=88.1
Q ss_pred CCchhHHHHHHcCCCCCccccc--cC--CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEE
Q psy1534 4 PVTETELVEQIAHQDFPMFQRI--ET--GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIV 77 (587)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV 77 (587)
|++.-..+.+++.+++...... .. .=.+.--|||+|||+++||.|| -.|++||+|++|.+++|+ ||+|+||||+
T Consensus 3 plt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFL 82 (219)
T KOG0126|consen 3 PLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFL 82 (219)
T ss_pred hhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEE
Confidence 6666677777777766443211 11 1124456999999999999998 889999999999999997 9999999999
Q ss_pred EECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 78 EFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 78 ~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
.|++..+...|+..|||..|.||.|+|....
T Consensus 83 cYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 83 CYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EecCccceEEEEeccCCceecceeEEeeecc
Confidence 9999999999999999999999999999876
No 73
>KOG0122|consensus
Probab=99.47 E-value=1.3e-13 Score=126.88 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=76.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
++.+|=|.||+.+++|++| ++|.+||.|..|.|.+|+ ||.+||||||.|.+.++|.+||+.|||+-+..-.|+|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5667999999999999999 899999999999999997 99999999999999999999999999999999999999997
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 43
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=4e-13 Score=134.62 Aligned_cols=167 Identities=22% Similarity=0.343 Sum_probs=119.6
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..+|||+|||+++++++| ++|.+||+|..|.|..|+ +++++|||||+|.+.++|..|++.+++..|.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999 899999999999999996 999999999999999999999999999999999999999752
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
....+... ... ....+ .................+++.+++..++..++...|..+|.+...
T Consensus 195 ~~~~~~~~-------~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T COG0724 195 ASQPRSEL-------SNN------LDASF------AKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRA 255 (306)
T ss_pred cccccccc-------ccc------cchhh------hccccccccccccccceeeccccccccchhHHHHhccccccceee
Confidence 00000000 000 00000 000001111134456789999999999999999999999999777
Q ss_pred EEeeCCC-CCcceEEEEEecCHHHHHHHH
Q psy1534 190 EIALDKD-GKSRGFGTVEFDHPVEAVQSI 217 (587)
Q Consensus 190 ~i~~~~~-g~~~g~afV~f~~~~~A~~Al 217 (587)
.+..... .......++.+.....+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 256 SLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred eccCCCCCcccccccccchhHHHhhhhhh
Confidence 6666554 223333444444443333333
No 75
>KOG0107|consensus
Probab=99.47 E-value=1.6e-13 Score=120.06 Aligned_cols=79 Identities=28% Similarity=0.472 Sum_probs=74.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|||+||+..+++.||..+|..||.|.+|+|.+.+ .|||||+|+++.+|+.|+..|+|+.|+|..|+|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 36899999999999999999999999999999999854 79999999999999999999999999999999999887
Q ss_pred CCC
Q psy1534 238 ADR 240 (587)
Q Consensus 238 ~~~ 240 (587)
..+
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 765
No 76
>KOG0125|consensus
Probab=99.46 E-value=2e-13 Score=130.56 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|+|+|||+...|.||+.+|++||.|.+|.|+.+.. -+|||+||+|++.+||++|.++|||..+.||+|+|+.+.+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 357999999999999999999999999999999998765 4699999999999999999999999999999999999877
Q ss_pred CCC
Q psy1534 238 ADR 240 (587)
Q Consensus 238 ~~~ 240 (587)
+-.
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 643
No 77
>KOG0122|consensus
Probab=99.46 E-value=2.2e-13 Score=125.45 Aligned_cols=81 Identities=31% Similarity=0.399 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
..++|-|.||+.+++|++|+++|.+||.|..|.|.+|+. |.++|||||.|.+.++|.+||..|||+-++.--|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 467899999999999999999999999999999999996 9999999999999999999999999999999999999998
Q ss_pred CC
Q psy1534 237 VA 238 (587)
Q Consensus 237 ~~ 238 (587)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 78
>KOG0121|consensus
Probab=99.45 E-value=1e-13 Score=114.68 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=74.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
-....+|||+||++-++|++| ++|+++|+|..|.+=.|+ +..+.|||||+|.+.++|+.|++-+++..+..++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 346789999999999999999 999999999999888887 888899999999999999999999999999999999998
Q ss_pred cc
Q psy1534 107 AV 108 (587)
Q Consensus 107 a~ 108 (587)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 76
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=5.1e-13 Score=104.30 Aligned_cols=70 Identities=36% Similarity=0.621 Sum_probs=65.2
Q ss_pred EEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 162 VFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 162 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
|||+|||+++++++|+++|+.||.|..+.+.+++++.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988789999999999999999999999999999999874
No 80
>KOG0149|consensus
Probab=99.44 E-value=2.3e-13 Score=124.96 Aligned_cols=79 Identities=24% Similarity=0.470 Sum_probs=73.3
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
-++|||++|+|.+..++|+++|++||+|++..|+.|+. |++|||+||+|.|.++|.+|++. -.-.|+||+..|++|..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 47999999999999999999999999999999999996 99999999999999999999975 45789999999999876
Q ss_pred C
Q psy1534 238 A 238 (587)
Q Consensus 238 ~ 238 (587)
.
T Consensus 91 g 91 (247)
T KOG0149|consen 91 G 91 (247)
T ss_pred c
Confidence 3
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=4.4e-13 Score=127.76 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=69.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||+++++++| ++|+.||+|++|.|++|+. ++|||||+|.++++|+.|| .|+|..|.|++|.|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 3579999999999999999 8999999999999998853 4699999999999999999 599999999999999986
No 82
>KOG0121|consensus
Probab=99.43 E-value=3.2e-13 Score=111.78 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=75.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..+++|||+||++.++||.|.++|+++|+|..|.+-.|+. ..+.|||||+|.+.++|+.|++.+++..+..++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3578999999999999999999999999999998888885 788999999999999999999999999999999999986
Q ss_pred cC
Q psy1534 236 RV 237 (587)
Q Consensus 236 ~~ 237 (587)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 54
No 83
>KOG1548|consensus
Probab=99.43 E-value=1.7e-11 Score=118.49 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=76.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCee--------EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVE--------NVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 229 (587)
..+.|||.|||.++|.+++.++|++||.|. .|+|.++..|+.+|-|.|.|...+++.-|++.|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356799999999999999999999999874 489999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q psy1534 230 ITVRMDRVADR 240 (587)
Q Consensus 230 l~v~~a~~~~~ 240 (587)
|+|+.|+-..+
T Consensus 213 ~rVerAkfq~K 223 (382)
T KOG1548|consen 213 LRVERAKFQMK 223 (382)
T ss_pred EEEehhhhhhc
Confidence 99999877654
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=125.08 Aligned_cols=78 Identities=22% Similarity=0.452 Sum_probs=71.7
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
.++|||+|||+.++|++|+++|+.||.|.+|.|++++. ++|||||+|.++++|+.|| .|||..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 46999999999999999999999999999999998863 5799999999999999999 59999999999999998654
Q ss_pred C
Q psy1534 239 D 239 (587)
Q Consensus 239 ~ 239 (587)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 85
>KOG4207|consensus
Probab=99.41 E-value=2.3e-13 Score=121.93 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=75.7
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
.....|-|.||.+-++-++| .+|++||.|-+|.|.+|+ |+.++|||||.|.+..||+.|+++|+|..|+|+.|.|+.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 45668999999999999999 899999999999999998 9999999999999999999999999999999999999998
Q ss_pred c
Q psy1534 108 V 108 (587)
Q Consensus 108 ~ 108 (587)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 8
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=1.4e-12 Score=130.70 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCH--HHHHHHHHHhCCceeCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSP--DLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~--e~A~~Al~~l~g~~l~gr~i~V 104 (587)
......+|||+||++++++++| ..|+.||.|.+|.|++ .+| ||||||+|.+. +++.+||+.|||..+.|+.|+|
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3446689999999999999999 7899999999999994 377 89999999988 7899999999999999999999
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
..+.
T Consensus 83 NKAK 86 (759)
T PLN03213 83 EKAK 86 (759)
T ss_pred eecc
Confidence 9998
No 87
>KOG0113|consensus
Probab=99.37 E-value=1.4e-12 Score=123.49 Aligned_cols=78 Identities=17% Similarity=0.347 Sum_probs=73.9
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+=.+|||.-|+++++|..| +.|++||+|+.|+|++|. ||++||||||+|+++.+...|.+..+|..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 4458999999999999999 789999999999999997 99999999999999999999999999999999999998765
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3e-12 Score=120.06 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+...+|||+||++++|+++| ++|+.||+|.+|+|++| +.+++||||+|+++++|+.|+ .|+|..|.+++|.|..+.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35578999999999999999 89999999999999998 445689999999999999999 789999999999999877
No 89
>KOG0130|consensus
Probab=99.36 E-value=8.3e-13 Score=110.26 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=72.9
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
-|||.++..+++|++| +.|..||+|+++++-.|+ ||-.||||+|+|++.++|++|++.+||..|.+++|.|.|+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4999999999999999 889999999999999996 99999999999999999999999999999999999999998
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=4.1e-12 Score=98.92 Aligned_cols=71 Identities=27% Similarity=0.425 Sum_probs=66.7
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
+|||+|||..++.++| ++|++||+|.++++..++ +.++|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5999999999999999 889999999999999887 7788999999999999999999999999999999873
No 91
>KOG0114|consensus
Probab=99.35 E-value=3.7e-12 Score=101.53 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=71.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
++..+-|||+|||+++|.++. ++|.+||+|..|+|=.. ...+|.|||.|++..+|++|++.|+|..+.++.+.|.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 345567999999999999998 99999999999998654 345799999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
...
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 833
No 92
>KOG4207|consensus
Probab=99.35 E-value=3.3e-12 Score=114.53 Aligned_cols=82 Identities=30% Similarity=0.482 Sum_probs=77.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
...|.|-||.+.++.++|+.+|++||.|-+|.|++|+. ..++|||||.|.+..+|+.|+++|+|..++|+.|.|.+|+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 46899999999999999999999999999999999995 99999999999999999999999999999999999999877
Q ss_pred CCC
Q psy1534 238 ADR 240 (587)
Q Consensus 238 ~~~ 240 (587)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 654
No 93
>KOG0113|consensus
Probab=99.35 E-value=6.7e-12 Score=118.87 Aligned_cols=95 Identities=28% Similarity=0.441 Sum_probs=84.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
...+-+||||+-|+.+++|.+|+..|+.||.|..|.|++|+ +|+++|||||+|+++.+...|.+..+|.+|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34678999999999999999999999999999999999997 59999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCCCcc
Q psy1534 234 MDRVADRLDGPVRLPEGLK 252 (587)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~ 252 (587)
+.+....+ .++|..|.
T Consensus 177 vERgRTvk---gW~PRRLG 192 (335)
T KOG0113|consen 177 VERGRTVK---GWLPRRLG 192 (335)
T ss_pred eccccccc---cccccccc
Confidence 98766533 45555553
No 94
>KOG0114|consensus
Probab=99.32 E-value=8.6e-12 Score=99.46 Aligned_cols=71 Identities=25% Similarity=0.457 Sum_probs=66.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeec---CCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEEC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKG---KGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~---~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~ 587 (587)
.-|||+|||+++|.++.-|+|-.||.|..++|.- .+|+|||.|++-.+|.+||++|+|+.+.++.+.|-+|
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4789999999999999999999999999999943 3699999999999999999999999999999999875
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=116.15 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=69.8
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+.+|||+||++.+||++|+++|+.||+|.+|+|++|. +.++||||+|.++++|+.|+ .|+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 5799999999999999999999999999999999884 55689999999999999999 7899999999999987553
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=1.3e-11 Score=95.99 Aligned_cols=72 Identities=40% Similarity=0.616 Sum_probs=67.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 161 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
+|||+|||..+++++|+++|++||.|..+.+..++ +.++++|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999877 7788999999999999999999999999999998873
No 97
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=8e-12 Score=125.31 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCH--HHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHP--VEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~--~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...+|||+||+++++++||+.+|+.||.|.+|.|++.. | ||||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-C--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 45799999999999999999999999999999999543 5 89999999987 7899999999999999999999988
Q ss_pred cCC
Q psy1534 236 RVA 238 (587)
Q Consensus 236 ~~~ 238 (587)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 765
No 98
>KOG4454|consensus
Probab=99.31 E-value=3e-13 Score=122.25 Aligned_cols=145 Identities=23% Similarity=0.313 Sum_probs=125.7
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.++..++|||.|+-..++|+.| |+|-+-|+|..|.|..+++++.| ||||.|+++-.+..|++.+||..+.+++|+|++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4567789999999999999999 89999999999999998888888 999999999999999999999999999887754
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEec----CCCCCcHHHHHHHHHh
Q psy1534 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVAN----LDYKVDEKKLREVFRL 182 (587)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~l~~~F~~ 182 (587)
- .++ |...++++.+.+.|+.
T Consensus 84 r--------------------------------------------------------~G~shapld~r~~~ei~~~v~s~ 107 (267)
T KOG4454|consen 84 R--------------------------------------------------------CGNSHAPLDERVTEEILYEVFSQ 107 (267)
T ss_pred c--------------------------------------------------------cCCCcchhhhhcchhhheeeecc
Confidence 3 333 5667889999999999
Q ss_pred cCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy1534 183 AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229 (587)
Q Consensus 183 ~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 229 (587)
.+.+..+++.++.+|+++-++|+.+.-....-.++....+....=++
T Consensus 108 a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 108 AGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred cCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 99999999999999999999999998887777888776655444333
No 99
>KOG1365|consensus
Probab=99.29 E-value=3.5e-12 Score=124.18 Aligned_cols=188 Identities=18% Similarity=0.166 Sum_probs=134.4
Q ss_pred EEEcCCCCCCCHHHH-Hhccc----CCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 35 VVMDLIQGDASLYQI-SHLST----VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 35 vfV~nlp~~~t~~~l-~~F~~----~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
|-.++||+++++.|+ ++|.. -|-++.|-.++.++|+..|-|||.|..+++|+.|+.+ |...|+-|.|.+.++..
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTA 242 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhH
Confidence 345799999999998 78852 2356678888888999999999999999999999977 77888888888887763
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCC--CCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC-e
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGN--TYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK-V 186 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i 186 (587)
.+....- .+. ....... +...-+..............+|.+++||+..+.|||.++|..|-. |
T Consensus 243 aEvqqvl---------nr~-----~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i 308 (508)
T KOG1365|consen 243 AEVQQVL---------NRE-----VSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDI 308 (508)
T ss_pred HHHHHHH---------Hhh-----ccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhc
Confidence 3211100 000 0000000 000000000111112333568999999999999999999999865 4
Q ss_pred eE--EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 187 EN--VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 187 ~~--v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.. |.+..+..|++.|.|||+|.+.|+|..|....+++....|.|.|--+..
T Consensus 309 ~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 309 RFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred ccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 33 7888888899999999999999999999998888888889988866443
No 100
>KOG0108|consensus
Probab=99.29 E-value=4.6e-12 Score=130.95 Aligned_cols=77 Identities=31% Similarity=0.434 Sum_probs=75.0
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..|||+|||+++++++| ++|+..|.|.+++++.|+ +|++||||||+|.+.++|++|++.||+.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 88999999999999999 899999999999999997 999999999999999999999999999999999999999983
No 101
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.3e-11 Score=95.57 Aligned_cols=69 Identities=30% Similarity=0.478 Sum_probs=64.9
Q ss_pred EcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 37 MDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 37 V~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
|+|||..+++++| ++|++||+|.+|++..++ ++.++|+|||+|.+.++|.+|++.+++..+.+++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999 889999999999999987 78999999999999999999999999999999999873
No 102
>KOG0111|consensus
Probab=99.28 E-value=2.9e-12 Score=115.79 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=77.9
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...++|||++|-.+++|..| ..|-+||.|++|.|+.|- ++++||||||+|.-.|||..||..||+.+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999 789999999999999994 9999999999999999999999999999999999999999
Q ss_pred ccccC
Q psy1534 108 VEDKG 112 (587)
Q Consensus 108 ~~~~~ 112 (587)
.+.+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 96653
No 103
>KOG0111|consensus
Probab=99.27 E-value=3.5e-12 Score=115.29 Aligned_cols=86 Identities=33% Similarity=0.556 Sum_probs=80.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
..++|||++|..+++|.-|...|-+||.|..|.++.|.. +++|||+||+|...|+|..||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 357999999999999999999999999999999999985 9999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy1534 237 VADRLDG 243 (587)
Q Consensus 237 ~~~~~~~ 243 (587)
+.+.+..
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8765443
No 104
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=4.9e-11 Score=93.29 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=68.3
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
+|||++||..+++++| ++|+.||+|..+.+..++...++++|||+|.+.++|..|++.+++..+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999 889999999999999988667889999999999999999999999999999999864
No 105
>KOG0126|consensus
Probab=99.24 E-value=1.1e-12 Score=115.31 Aligned_cols=79 Identities=23% Similarity=0.442 Sum_probs=74.5
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+.-|||+|||+++||.||..+|++||+|+.|.+++|+. |+++||||+.|++..+..-|+..|||..|.||.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 46899999999999999999999999999999999996 99999999999999999999999999999999999986433
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=5.2e-11 Score=92.20 Aligned_cols=70 Identities=43% Similarity=0.666 Sum_probs=65.7
Q ss_pred EecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 164 VANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 164 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
|+|||..+++++|+++|++||.|..+.+..++. +.++++|||+|.+.++|.+|++.+++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999999875 8899999999999999999999999999999998873
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=1.1e-10 Score=91.28 Aligned_cols=74 Identities=43% Similarity=0.634 Sum_probs=69.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 161 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
+|+|+|||..+++++|+++|+.||.|..+.+..++...++++|||+|.+.++|..|++.+++..+.++.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999987777899999999999999999999999999999999864
No 108
>KOG0130|consensus
Probab=99.22 E-value=2.9e-11 Score=101.15 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=77.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+-.|||.++...++|++|.+.|..||+|..+.+-.|+. |..+|||+|+|++.++|++|+..+||..+.+.+|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 45899999999999999999999999999999999985 99999999999999999999999999999999999999877
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
+.
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 65
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=5.9e-11 Score=88.09 Aligned_cols=54 Identities=31% Similarity=0.488 Sum_probs=49.3
Q ss_pred HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 50 SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 50 ~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
++|++||+|.+|++..+. +++|||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 3 ~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 3 KLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred HHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 679999999999998763 589999999999999999999999999999999985
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=99.18 E-value=7.8e-11 Score=91.72 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=52.0
Q ss_pred HHHH-Hhcc----cCCCeEEEE-EeeCC-C--CCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 46 LYQI-SHLS----TVGDVTYVE-ILNDD-T--GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 46 ~~~l-~~F~----~~G~V~~v~-i~~d~-~--g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
+++| ++|+ +||+|.+|. |+.++ + +.++|||||+|.+.++|.+|++.|||..+.||+|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3455 5676 999999996 77765 5 899999999999999999999999999999999987
No 111
>KOG0108|consensus
Probab=99.18 E-value=4e-11 Score=124.04 Aligned_cols=82 Identities=29% Similarity=0.502 Sum_probs=78.4
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
+.|||+|+|++++|++|.++|+..|.|.+++++.|++ |+++||+|++|.+.++|.+|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7999999999999999999999999999999999996 999999999999999999999999999999999999998776
Q ss_pred CCC
Q psy1534 239 DRL 241 (587)
Q Consensus 239 ~~~ 241 (587)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 643
No 112
>KOG0129|consensus
Probab=99.16 E-value=6e-10 Score=113.66 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=119.8
Q ss_pred ccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC--CC--Ccce---EEEEEECCHHHHHHHHHHhCCce
Q psy1534 25 IETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD--TG--KPRG---SAIVEFQSPDLVRKAVNKMHRFE 96 (587)
Q Consensus 25 ~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~--~g--~skG---~aFV~F~~~e~A~~Al~~l~g~~ 96 (587)
....+.-.++|||++||++++|++| ..|..||.|. |.-.... .+ -++| |+|+.|+++..++.-+.++.-
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-- 328 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-- 328 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh--
Confidence 3344456679999999999999999 7799999864 3333211 11 3556 999999999999887765432
Q ss_pred eCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHH
Q psy1534 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKL 176 (587)
Q Consensus 97 l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l 176 (587)
....+.++...+....+ ..+..........+........++.+||||++||.-++-++|
T Consensus 329 -~~~~~yf~vss~~~k~k--------------------~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eL 387 (520)
T KOG0129|consen 329 -GEGNYYFKVSSPTIKDK--------------------EVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEEL 387 (520)
T ss_pred -cccceEEEEecCccccc--------------------ceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHH
Confidence 44444443333111100 000000011111222333445677899999999999999999
Q ss_pred HHHHH-hcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHH
Q psy1534 177 REVFR-LAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 177 ~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
-.+|+ .||.|..+-|-.|++ +.++|-|-|+|.+..+-.+||.+
T Consensus 388 A~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 388 AMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999 699999999999976 89999999999999999999975
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=3.2e-10 Score=84.13 Aligned_cols=56 Identities=32% Similarity=0.490 Sum_probs=51.2
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 176 LREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 176 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
|+++|++||+|.++.+.++. +++|||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998764 589999999999999999999999999999999985
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.10 E-value=3.7e-10 Score=113.02 Aligned_cols=79 Identities=41% Similarity=0.623 Sum_probs=75.8
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|..||.|..+.+..++ .++++|||||+|.+.++|..|++.+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999997 599999999999999999999999999999999999999765
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=7.6e-10 Score=86.14 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=53.7
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCC-C--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 173 EKKLREVFR----LAGKVENVE-IALDK-D--GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 173 e~~l~~~F~----~~G~i~~v~-i~~~~-~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
+++|+++|+ +||.|.+|. |+.++ + ++++||+||+|.+.++|.+|++.|||+.+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 66655 3 889999999999999999999999999999999986
No 116
>KOG4208|consensus
Probab=99.03 E-value=6.4e-10 Score=100.62 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=76.0
Q ss_pred ccCCCCCCCcEEEcCCCCCCCHHHH-HhcccC-CCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeE
Q psy1534 25 IETGAPLEVPVVMDLIQGDASLYQI-SHLSTV-GDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101 (587)
Q Consensus 25 ~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~-G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~ 101 (587)
.......+.-+||+.+|.-+.+.+| .+|.+| |.|..+++-|++ ||.|||||||+|+++|.|+-|-+.||++.|.++.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 3444556667999999999999888 678887 789999998986 9999999999999999999999999999999999
Q ss_pred EEEEecccc
Q psy1534 102 LVIKEAVED 110 (587)
Q Consensus 102 i~V~~a~~~ 110 (587)
|.|.+..+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999998744
No 117
>KOG0128|consensus
Probab=98.95 E-value=9.4e-11 Score=125.63 Aligned_cols=146 Identities=18% Similarity=0.292 Sum_probs=126.1
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeC-CCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
.++||+||++.+.+.+| ..|..+|.+..|+|... .+++.||+|||+|..++++.+||.-.+...+ | +
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g----------K 736 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G----------K 736 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h----------h
Confidence 37999999999999999 67999999888887744 3888999999999999999999976443333 2 1
Q ss_pred cCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEE
Q psy1534 111 KGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVE 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~ 190 (587)
..|+|.|+|+..|.++|+.+|+.+|.+.++.
T Consensus 737 -------------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~ 767 (881)
T KOG0128|consen 737 -------------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLR 767 (881)
T ss_pred -------------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccc
Confidence 2799999999999999999999999999999
Q ss_pred EeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 191 IALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 191 i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
++..+.|+++|.+||.|.+..++.+++...+...+.-+.+.|.++.+.
T Consensus 768 ~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 768 LVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 999889999999999999999999999888877777777777776553
No 118
>KOG0415|consensus
Probab=98.92 E-value=2.4e-09 Score=103.65 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHHH-hcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQIS-HLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l~-~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...|+++-|||=.|.+-+|.++|+ +|+.||+|.+|.|++|. ||.+.-||||+|++.+++++|.-.|++..|.++.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 445788899999999999999996 59999999999999996 9999999999999999999999999999999999999
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
.++.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 9987
No 119
>KOG0415|consensus
Probab=98.90 E-value=2.7e-09 Score=103.33 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=80.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..||.+.|||-.|.+.++.+||.-+|+.||.|.+|.|++|.. |.+..||||+|++.+++++|.-.|++..|..+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 467899999999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
++....
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 876554
No 120
>KOG0226|consensus
Probab=98.89 E-value=1e-09 Score=102.05 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=130.4
Q ss_pred cEEEcCCCCCCCHHH-H---HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 34 PVVMDLIQGDASLYQ-I---SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~-l---~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..|+.++-.++.-+- | ..|+.|-.....+++++.-+.-++++|+.|.....-.++-..-+++++.-++|++.....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 455666544443332 2 458888888888999998777889999999988888887766666777777655443331
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
|.++.. .. -.....+||++.|..+++++-|...|.+|-.....
T Consensus 178 ------------------wedPsl--~e-----------------w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~a 220 (290)
T KOG0226|consen 178 ------------------WEDPSL--AE-----------------WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKA 220 (290)
T ss_pred ------------------cCCccc--cc-----------------CccccceeecccccccccHHHHHHHHHhccchhhc
Confidence 111110 01 11224589999999999999999999999888889
Q ss_pred EEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 190 EIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 190 ~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
++++|+. |+++||+||.|.+.+++.+|+..|+|+.++.|+|+++.+..+.
T Consensus 221 kviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 221 KVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999985 9999999999999999999999999999999999998776655
No 121
>KOG4210|consensus
Probab=98.83 E-value=5.4e-09 Score=103.61 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=134.9
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...++|++++.+++.+.++ .+|.++|.+..+.+.... ...++|+++|.|+..+.+..|+...-...+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 3568999999999988877 678999988888777765 88899999999999999999997633345555555444443
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEE-EecCCCCCcHHHHHHHHHhcCCee
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVF-VANLDYKVDEKKLREVFRLAGKVE 187 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~te~~l~~~F~~~G~i~ 187 (587)
.... +.. . +. .........++| |++|++.+++++|+..|..+|.|.
T Consensus 167 ~~~~-~~~--------------------n--------~~----~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~ 213 (285)
T KOG4210|consen 167 RRGL-RPK--------------------N--------KL----SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT 213 (285)
T ss_pred cccc-ccc--------------------c--------hh----cccccCccccceeecccccccchHHHhhhccCcCcce
Confidence 2210 000 0 00 000111223445 999999999999999999999999
Q ss_pred EEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q psy1534 188 NVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240 (587)
Q Consensus 188 ~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~ 240 (587)
.++++.++. +.++||++|.|.....+..++.. ....+.++++.+....+...
T Consensus 214 ~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 214 SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 999998886 99999999999999999999977 78899999999988877653
No 122
>KOG0132|consensus
Probab=98.76 E-value=1.6e-08 Score=107.46 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++||||+.|+..++|.||..+|+.||+|.+|.++.. ++||||.+....+|.+|+.+|+...+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4789999999999999999999999999999988764 79999999999999999999999999999999999987
Q ss_pred CCCC
Q psy1534 238 ADRL 241 (587)
Q Consensus 238 ~~~~ 241 (587)
+..+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 7543
No 123
>KOG4307|consensus
Probab=98.73 E-value=3.1e-06 Score=89.20 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=130.8
Q ss_pred CcEE--EcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 33 VPVV--MDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 33 ~~vf--V~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
.++| +++.+++..+.|+ ++|.- =.|..+.|..+. .+...|-++|+|....++++|+.. |...+-.|.|.|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g-~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPG-RNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCc-ccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 3455 6789999999999 45422 146677777776 333368999999999999999976 7788889999998877
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhh---hccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFL---ESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 185 (587)
.....-... ...... +......++.......... .....+...+..|||..||..+++.++.++|...-.
T Consensus 388 ~~~~~~a~~---~~~~~~----~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 388 NLGRNGAPP---FQAGVP----PPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred ccccccCcc---ccccCC----CCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 333211100 000000 0000000000000000000 011224556789999999999999999999998767
Q ss_pred eeE-EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 186 VEN-VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 186 i~~-v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
|++ |.|-+.++++-++.|||.|..++++..|+..-+.+.+..|.|+|.-.
T Consensus 461 Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 461 VEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred hhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 776 77877778888999999999999999998776777777888888743
No 124
>KOG4661|consensus
Probab=98.72 E-value=2.8e-08 Score=101.69 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...++|||.+|...+.-.+| .+|++||+|+-.+|+++. +--.+.|+||++.+.++|.+||+.|+.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 35678999999999999999 799999999999999995 5556789999999999999999999999999999999998
Q ss_pred cc
Q psy1534 108 VE 109 (587)
Q Consensus 108 ~~ 109 (587)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 83
No 125
>KOG0153|consensus
Probab=98.71 E-value=4.6e-08 Score=95.15 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=69.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML-NNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~ 233 (587)
+....++|||++|-..++|.+|++.|.+||+|.++.++.. +++|||+|.+.+.|+.|.+.. |...|.|++|+|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3445689999999999999999999999999999998875 579999999999999998765 5567899999999
Q ss_pred EccC
Q psy1534 234 MDRV 237 (587)
Q Consensus 234 ~a~~ 237 (587)
|.++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9887
No 126
>KOG0132|consensus
Probab=98.70 E-value=2.7e-08 Score=105.85 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 512 SNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 512 ~~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
..+...||+|.+||.+++++||+++|+.||+|.++++...++||||.+.++.+|++|+.+|+...+..+.|+|.|
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 456678999999999999999999999999999999999999999999999999999999999999999999876
No 127
>KOG0533|consensus
Probab=98.69 E-value=3.7e-08 Score=93.99 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=76.0
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..+.+|+|.|||+.++.+|| ++|..||+++.+-|-.|++|++.|+|=|.|...+||.+|++.+++..+.|++|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 45578999999999999999 89999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 128
>KOG0153|consensus
Probab=98.69 E-value=4.6e-08 Score=95.14 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCC-cccCceEEEEE
Q psy1534 511 SSNIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT-RIDGKIIDVTF 586 (587)
Q Consensus 511 ~~~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~-~~~g~~i~v~~ 586 (587)
-.+..-.+|+|.+|-+.++++||+|||.+||+|.++.+...++||||+|.++++|+.|.++.-.. -|.|++|+|.|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34555679999999889999999999999999999999988899999999999999999876554 57999999975
No 129
>KOG4208|consensus
Probab=98.68 E-value=5.9e-08 Score=88.05 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhc-CCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLA-GKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
......++|..+|.-+.+.++..+|.+| |.|..+++-|++ +|.++|||||+|++++.|.-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445689999999999999999999998 667888887887 49999999999999999999999999999999999999
Q ss_pred EccCC
Q psy1534 234 MDRVA 238 (587)
Q Consensus 234 ~a~~~ 238 (587)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87665
No 130
>KOG0128|consensus
Probab=98.65 E-value=1.3e-09 Score=117.07 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=119.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH--HhcccCCCeEEEEEeeCCCCCcce-EEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI--SHLSTVGDVTYVEILNDDTGKPRG-SAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l--~~F~~~G~V~~v~i~~d~~g~skG-~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
.-...+.++.++.+...+.++ ..|..+|.|+.|++.......+.. +.++++....+++.|... .+.-+.++.+.|.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCC
Confidence 345667888999888877766 679999999999998743333333 899999999999999954 7888888888888
Q ss_pred ecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q psy1534 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185 (587)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 185 (587)
.+..+..... .+ ..+. .....+++||+||+..+.++||...|..+|.
T Consensus 647 ~ad~~~~~~~--------------------~k------vs~n-------~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~ 693 (881)
T KOG0128|consen 647 LADAEEKEEN--------------------FK------VSPN-------EIRDLIKIFVSNLSPKMSEEDLSERFSPSGT 693 (881)
T ss_pred CCCchhhhhc--------------------cC------cCch-------HHHHHHHHHHhhcchhhcCchhhhhcCccch
Confidence 7774432110 00 0000 0112368999999999999999999999999
Q ss_pred eeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHH
Q psy1534 186 VENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 186 i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
+..++|.-.. .++.+|+||++|..++++.+||..
T Consensus 694 ~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 694 IEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred hhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 8887776333 388899999999999999999854
No 131
>KOG0533|consensus
Probab=98.65 E-value=1.2e-07 Score=90.56 Aligned_cols=83 Identities=27% Similarity=0.398 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
....+|+|.|||+.++++||+++|..||.+..+.+..++.|.+.|.|-|.|...++|.+|++.+|+..+.|+++++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 554
No 132
>KOG0112|consensus
Probab=98.59 E-value=3.8e-08 Score=106.38 Aligned_cols=161 Identities=12% Similarity=0.127 Sum_probs=133.1
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...++||++||+..+++.+| ..|..+|.|.+|.|.+-.-++---|+||.|.+.+.+-+|+..+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 35568999999999999999 68999999999998776444445699999999999999999988887775555554443
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
.+ ..+.+.+|+++|+..+....|...|..||.|..
T Consensus 450 ~k---------------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~ 484 (975)
T KOG0112|consen 450 PK---------------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI 484 (975)
T ss_pred cc---------------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCccee
Confidence 11 123578999999999999999999999999998
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEccCCCC
Q psy1534 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF--ERRITVRMDRVADR 240 (587)
Q Consensus 189 v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~a~~~~~ 240 (587)
|.+-.. .-|++|.|++...|+.|++.|.+..|. .+++.|.++.....
T Consensus 485 Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 485 IDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred eecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 877543 349999999999999999999999997 46788888776553
No 133
>KOG4661|consensus
Probab=98.56 E-value=1.6e-07 Score=96.24 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..+++|||.+|...+.-.||+.+|++||+|+-.+++.+.. --.++|+||++.+.++|.+||+.||...|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3468899999999999999999999999999999998763 345789999999999999999999999999999999987
Q ss_pred cCC
Q psy1534 236 RVA 238 (587)
Q Consensus 236 ~~~ 238 (587)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 654
No 134
>KOG0129|consensus
Probab=98.47 E-value=2.8e-06 Score=87.37 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=51.9
Q ss_pred CCeEEEeCCCCCCChHHHHHHHh-hcCCeeEEEeecC------CCeEEEEECCHHHHHHHHHH
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFR-NCGDIKFAEIKGK------GDIGLVRFDSEWTAKRAIDM 571 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~-~~G~v~~~~~~~~------~g~g~v~f~~~~~a~~Ai~~ 571 (587)
..||||.+||--++.++|..+|. -||.|+++-|+.| +|-|-|.|.+..+--+||.+
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 46999999999999999999999 8999999999665 58899999999999999986
No 135
>KOG0151|consensus
Probab=98.45 E-value=6.1e-07 Score=94.73 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=78.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC----CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD----GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 230 (587)
..+.+++|||+||++.++|+.|...|..||.|..++|+..+. .+.+-|+||.|-+..+|++|++.|+|..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 466789999999999999999999999999999999998763 5567799999999999999999999999999999
Q ss_pred EEEEccCCCCC
Q psy1534 231 TVRMDRVADRL 241 (587)
Q Consensus 231 ~v~~a~~~~~~ 241 (587)
++-|.++..-.
T Consensus 250 K~gWgk~V~ip 260 (877)
T KOG0151|consen 250 KLGWGKAVPIP 260 (877)
T ss_pred eeccccccccC
Confidence 99998665543
No 136
>KOG4454|consensus
Probab=98.45 E-value=7.9e-08 Score=87.59 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..++|||.|+...++|+-|.++|-+.|.|..|.|..+++++.+ ||||.|.++....-|++.+||..+.++.+.|++-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3579999999999999999999999999999999999998888 9999999999999999999999999999988774
No 137
>KOG0226|consensus
Probab=98.43 E-value=1.2e-07 Score=88.35 Aligned_cols=78 Identities=14% Similarity=0.254 Sum_probs=73.0
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+||.+.|--+++.+.| ..|.+|-.-...++++|. ||++|||+||.|.+++++..|+++|+|..++.|+|++..+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 5568999999999999999 789999999999999996 99999999999999999999999999999999999998776
No 138
>KOG4209|consensus
Probab=98.39 E-value=5e-07 Score=86.72 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=73.8
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
...+...|||+|+.+.+|.+++ .+|+.||.|..|.|++|. ++.+|||+||+|.+.+.+++|+. ||+..|.++.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3457789999999999999999 569999999999999998 77899999999999999999997 99999999999999
Q ss_pred ecc
Q psy1534 106 EAV 108 (587)
Q Consensus 106 ~a~ 108 (587)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 877
No 139
>KOG0116|consensus
Probab=98.37 E-value=4.9e-07 Score=93.40 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=65.9
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
.|||+|||.+++..+| +.|..||+|+...|.... .++...||||+|.+.++++.||++ +-..+++++|.|+.-.
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 4999999999999999 789999999998887754 455559999999999999999987 6888999999998755
No 140
>KOG0116|consensus
Probab=98.36 E-value=1.6e-06 Score=89.63 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=69.9
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
...|||+|||.++++++|+++|..||.|+...|.... .++..+||||+|.+.++++.||++ +-..+.+++|.|+-.+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4559999999999999999999999999988877654 345459999999999999999987 67788999999998776
Q ss_pred CCCC
Q psy1534 238 ADRL 241 (587)
Q Consensus 238 ~~~~ 241 (587)
..+.
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 141
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.33 E-value=1.2e-06 Score=73.41 Aligned_cols=70 Identities=17% Similarity=0.427 Sum_probs=48.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCC-----cccCceEEEEE
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT-----RIDGKIIDVTF 586 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~-----~~~g~~i~v~~ 586 (587)
+.|+|.+++..++.++|+++|++||.|.|+++.+....|+|.|.+.+.|+.|++.+.-. .|.+..+++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999999988899999999999999999987655 56666666654
No 142
>KOG4660|consensus
Probab=98.25 E-value=7.5e-07 Score=92.22 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=65.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
.....+|+|-|||.++++++|+++|+.||+|..|+.-+.+ +|.+||+|-|..+|++|+++|++..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456799999999999999999999999999997765543 68999999999999999999999999999887
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=8.5e-06 Score=66.68 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=68.0
Q ss_pred cEEEEecCCCCCcHHHHHHHHHh--cCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeC----CeEEEE
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRL--AGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLF----ERRITV 232 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~l~v 232 (587)
++|-|+|||...+.++|.+++.. .|...-+.++.|.. +.+.|||||.|.+++.|.+-.+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998876 35567778888874 788999999999999999999999999886 567788
Q ss_pred EEccCCC
Q psy1534 233 RMDRVAD 239 (587)
Q Consensus 233 ~~a~~~~ 239 (587)
.+|+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8876553
No 144
>KOG0151|consensus
Probab=98.24 E-value=1.9e-06 Score=91.13 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC----CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD----TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~----~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~ 101 (587)
.+.|...+|||+||+..++++.| ..|..||+|..|+|+.-+ ..+.+-|+||-|-+..||++|++.|+|..+..++
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 45677789999999999999999 789999999999999754 3356689999999999999999999999999999
Q ss_pred EEEEecc
Q psy1534 102 LVIKEAV 108 (587)
Q Consensus 102 i~V~~a~ 108 (587)
+++.|..
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999986
No 145
>KOG4660|consensus
Probab=98.24 E-value=8.5e-07 Score=91.81 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=107.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
....+.|+|-|||.++++++| ++|+.||+|++|+.-+. .+|.+||+|.|..+|+.|+++|++.+|.|+.|+....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 345568999999999999999 89999999999765443 4689999999999999999999999999999882211
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCee
Q psy1534 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVE 187 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~ 187 (587)
.+....-. . ....| ..+... .......... ...+|+ .|++..+..-++..|.-+|.+.
T Consensus 148 ~~~~~~~~-----~--~~~~~-------~~~~~p------~a~s~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~~~~~ 205 (549)
T KOG4660|consen 148 ARRAMGLQ-----S--GTSFL-------NHFGSP------LANSPPGGWP-RGQLFG-MLSPTRSSILLEHISSVDGSSP 205 (549)
T ss_pred ccccchhc-----c--cchhh-------hhccch------hhcCCCCCCc-CCccee-eeccchhhhhhhcchhccCccc
Confidence 11110000 0 00111 011000 0000000111 123333 3888888877777777788765
Q ss_pred EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 188 NVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 188 ~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
. +..... .---|++|.+..++..+...+ |..+.+....+.++.+
T Consensus 206 ~-~~~~~~----~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 206 G-RETPLL----NHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred c-ccccch----hhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 4 211111 113567777777775554432 4555555555555444
No 146
>KOG4209|consensus
Probab=98.23 E-value=1.6e-06 Score=83.22 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=74.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
....+||+|+.+.++.+++...|+.||.|..+.|+.|+. +.++||+||+|.+.+.+++|+. |++..|.++.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 456899999999999999999999999999999999997 7899999999999999999997 99999999999999876
Q ss_pred CC
Q psy1534 237 VA 238 (587)
Q Consensus 237 ~~ 238 (587)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 65
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.22 E-value=5.8e-06 Score=64.16 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=46.2
Q ss_pred eEEEeCCCCCCChHHH----HHHHhhcC-CeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 518 TVVVKNLPPTITWQEL----RDKFRNCG-DIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l----~~~f~~~G-~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.|+|+|||.+.+...+ +.++..+| +|..+ ..++|+|.|.+++.|++|.++|+|..+.|++|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 6899999999987665 45555777 57654 247999999999999999999999999999999975
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.20 E-value=4.3e-06 Score=64.91 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=48.6
Q ss_pred CcEEEcCCCCCCCHHHH-----HhcccCC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 33 VPVVMDLIQGDASLYQI-----SHLSTVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-----~~F~~~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.-|||.|||.+.+-..| .++.-|| +|.+|. .+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 35899999999987765 5677777 787762 37899999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8733
No 149
>KOG2193|consensus
Probab=98.09 E-value=3.5e-07 Score=90.90 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=119.7
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC-ceeCCeEEEEEeccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR-FETKGRKLVIKEAVE 109 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g-~~l~gr~i~V~~a~~ 109 (587)
+++|++||....+-.+| .+|..-- ....-.+++ .||+||.+.+...|.+|++.+++ ..+.|+++.|..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 57999999999999998 5674431 111122333 38999999999999999999998 568899999998875
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
++. .++++-|.|+|+...++-|..+...||.++.|
T Consensus 76 kkq---------------------------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~ 110 (584)
T KOG2193|consen 76 KKQ---------------------------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENC 110 (584)
T ss_pred HHH---------------------------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHh
Confidence 532 13578899999999999999999999999988
Q ss_pred EEee-CCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 190 EIAL-DKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 190 ~i~~-~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.... +.. .-..-|+|...+.+..||..|++..+....++|.|-..
T Consensus 111 eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 111 EQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhccchH---HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 6543 321 22345788999999999999999999999999988544
No 150
>KOG1995|consensus
Probab=98.02 E-value=2.9e-05 Score=76.70 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=61.5
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEE------------e--ecCCCeEEEEECCHHHHHHHHHHhCCCcccCce
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAE------------I--KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKI 581 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~------------~--~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~ 581 (587)
.-+|||.+||+.++.++|.++|.++|.|..-+ + ...++.|.|.|++...|+.||..+++..|++..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 45999999999999999999999999884222 1 122589999999999999999999999999999
Q ss_pred EEEEE
Q psy1534 582 IDVTF 586 (587)
Q Consensus 582 i~v~~ 586 (587)
|+|.+
T Consensus 146 ikvs~ 150 (351)
T KOG1995|consen 146 IKVSL 150 (351)
T ss_pred chhhh
Confidence 99864
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.99 E-value=3.7e-05 Score=62.94 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=63.5
Q ss_pred CcEEEcCCCCCCCHHHH-Hhcc--cCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeC----CeEEEE
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLS--TVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETK----GRKLVI 104 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~--~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~----gr~i~V 104 (587)
.+|-|+|||...|.++| +++. -.|...-+.++.|. ++.+.|||||-|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999987 4332 24677778999995 8889999999999999999999999998886 466677
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7776
No 152
>KOG0112|consensus
Probab=97.79 E-value=2e-05 Score=85.84 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=63.3
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccC--ceEEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDG--KIIDVTF 586 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g--~~i~v~~ 586 (587)
..+++|.+|+.-+....|...|..||.|.-+++....-++.|.|++...++.|++.|-|..|++ ++|+|.|
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3589999999999999999999999999999988777899999999999999999999999985 5566653
No 153
>KOG1995|consensus
Probab=97.72 E-value=2.2e-05 Score=77.58 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=73.9
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeE--------EEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCC
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVT--------YVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG 99 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~--------~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g 99 (587)
....+|||-+||..+++++| ++|.++|.|. .|+|-+|+ |++.||-|.|.|.++..|+.|+..++++.|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 46678999999999999999 7899999887 37888886 99999999999999999999999999999999
Q ss_pred eEEEEEecccc
Q psy1534 100 RKLVIKEAVED 110 (587)
Q Consensus 100 r~i~V~~a~~~ 110 (587)
.+|+|..+.+.
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999988844
No 154
>KOG4676|consensus
Probab=97.72 E-value=3.7e-05 Score=76.19 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=123.1
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC----CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD----TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~----~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..-|-|-||.+.++.+++ .+|.-.|+|.+++|+... -......|||.|.+...+.-|- .|.+++|-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 346889999999999999 789999999999998753 2244579999999999999887 6789999999999988
Q ss_pred cccccCCCC-------CCC-CCCCCCCchhhhhccCCc-c-------cCCCCCCChhhhhccCCCCCCCcEEEEecCCCC
Q psy1534 107 AVEDKGGRR-------NMG-GGGGVDRDLSALLQNNSS-K-------FGNTYGLSPQFLESLGINCPLINKVFVANLDYK 170 (587)
Q Consensus 107 a~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~ 170 (587)
+........ ... ..+-...+. -.+...+. . ...+..+++.... ... .....+++|.+|+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg-~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A-~kl-eeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDG-VLPGDRPLTKINHSPNAILKTPELPPQAAA-KKL-EEIRRTREVQSLISA 162 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCC-ccCCCCccccccCCccceecCCCCChHhhh-hhh-HHHHhhhhhhcchhh
Confidence 762211100 000 000001111 11111110 1 1111112221111 111 112378999999999
Q ss_pred CcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 171 VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 171 ~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
+...++-+.|..+|+|....+.... ..-+|-|+|........|+.. +|..+.
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 9999999999999998877654432 345778999998888888865 777665
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.71 E-value=5.7e-05 Score=63.34 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=44.2
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc-----eeCCeEEEEEE
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ-----NLFERRITVRM 234 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~-----~~~g~~l~v~~ 234 (587)
+.|+|.+++..++.++|+++|+.||.|..|.+.+.. ..|||.|.+.+.|++|+..+.-. .+.+..+.+++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 579999999999999999999999999999887753 37999999999999999877433 44555555443
No 156
>KOG2314|consensus
Probab=97.61 E-value=0.00012 Score=75.87 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=64.0
Q ss_pred CCCcEEEcCCCCCC--CHHHH-----HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC-CeEE
Q psy1534 31 LEVPVVMDLIQGDA--SLYQI-----SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK-GRKL 102 (587)
Q Consensus 31 ~~~~vfV~nlp~~~--t~~~l-----~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~-gr~i 102 (587)
-..-|+|.|+|--- ..+-| ++|+++|+|..+.++.++.|.++||.|++|.+..+|+.|++.|||+.|. .+.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 33468999998533 33332 6899999999999999987779999999999999999999999999887 5677
Q ss_pred EEEecc
Q psy1534 103 VIKEAV 108 (587)
Q Consensus 103 ~V~~a~ 108 (587)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776654
No 157
>KOG0115|consensus
Probab=97.59 E-value=0.00016 Score=68.17 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=80.6
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEE
Q psy1534 83 DLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKV 162 (587)
Q Consensus 83 e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (587)
.-|+.|..+|++....++.++|.++.. ..|
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~--------------------------------------------------a~l 34 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH--------------------------------------------------AEL 34 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc--------------------------------------------------ceE
Confidence 357778888999999999999999984 279
Q ss_pred EEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy1534 163 FVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221 (587)
Q Consensus 163 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 221 (587)
||.||+..++.+.|.+.|+.||.|....+.-|..+++.+-++|.|...-.|.+|+..++
T Consensus 35 ~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 35 YVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred EEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 99999999999999999999999999888888889999999999999999999998774
No 158
>KOG4676|consensus
Probab=97.58 E-value=9.2e-05 Score=73.48 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=62.4
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC----CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD----GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..|.|.||.+.++.+.++.+|.-.|+|.++.|+...+ ....-.|||.|.+...+..|- .|.+..+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3899999999999999999999999999999887543 344568999999998888875 56777888888777654
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=8.5e-05 Score=72.16 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=61.7
Q ss_pred CcEEEcCCCCCCCHHH----H---HhcccCCCeEEEEEeeCC-CCCc-ceEE--EEEECCHHHHHHHHHHhCCceeCCeE
Q psy1534 33 VPVVMDLIQGDASLYQ----I---SHLSTVGDVTYVEILNDD-TGKP-RGSA--IVEFQSPDLVRKAVNKMHRFETKGRK 101 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~----l---~~F~~~G~V~~v~i~~d~-~g~s-kG~a--FV~F~~~e~A~~Al~~l~g~~l~gr~ 101 (587)
.-|||-+||..+-.++ | ++|.+||.|..|.|-+.. .-.+ .+.+ ||+|.+.|||.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3588999988775554 3 789999999998776553 2221 2334 99999999999999999999999999
Q ss_pred EEEEecccc
Q psy1534 102 LVIKEAVED 110 (587)
Q Consensus 102 i~V~~a~~~ 110 (587)
|+..+-..+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987744
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00023 Score=51.54 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=44.8
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHH
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAI 569 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai 569 (587)
+.|.|.+.|.+..+ ++..+|..||+|+...+.......+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 47899999988774 45558999999999999866689999999999999985
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.49 E-value=0.00014 Score=52.71 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=45.2
Q ss_pred CcEEEcCCCCCCCHHHHHhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHH
Q psy1534 33 VPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAV 89 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al 89 (587)
+.|-|.+.+.+..+..|++|..||+|.++.+.. .+.+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 457899999999888889999999999988762 2468999999999999996
No 162
>KOG2193|consensus
Probab=97.49 E-value=1.1e-05 Score=80.48 Aligned_cols=69 Identities=16% Similarity=0.498 Sum_probs=57.4
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeec-CCCeEE--EEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKG-KGDIGL--VRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~-~~g~g~--v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.+-|+|+|....|+=|..|...||.|..|++.. +.-.+. |.|.+.+.++.||.+|||..|...-++|-|
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 577889999999999999999999999888843 333333 588999999999999999999877776654
No 163
>KOG2314|consensus
Probab=97.26 E-value=0.001 Score=69.29 Aligned_cols=78 Identities=27% Similarity=0.362 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCCCc------HHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEE
Q psy1534 158 LINKVFVANLDYKVD------EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF-ERRI 230 (587)
Q Consensus 158 ~~~~l~V~nLp~~~t------e~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l 230 (587)
-.+.|+|-|+|.--. ..-|..+|+++|+|....++.+..|..+||.|++|.+..+|+.|++.|||+.+. .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 357899999986422 234678999999999999999988889999999999999999999999999986 6777
Q ss_pred EEEEc
Q psy1534 231 TVRMD 235 (587)
Q Consensus 231 ~v~~a 235 (587)
.|+.-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77653
No 164
>KOG4210|consensus
Probab=97.21 E-value=0.00033 Score=69.81 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCcEE-EcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 31 LEVPVV-MDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 31 ~~~~vf-V~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...++| |++++.++++++| ++|..+|.|..+++..++ ++.++|||||.|.+...+.+|+.. ....+.++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 444677 9999999999999 699999999999999997 999999999999999999999977 788999999999988
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 744
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0017 Score=53.59 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=50.7
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEE-------------eecCCCeEEEEECCHHHHHHHHHHhCCCcccCceE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAE-------------IKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKII 582 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~-------------~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i 582 (587)
..-|.|.+.|.. .-..+.++|+.||.|+... +.....--.|.|+++.+|++|+.+ ||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 568999999988 4577899999999997664 444557899999999999999998 9999998654
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.09 E-value=0.0013 Score=54.29 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=53.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHhcccCCCeEEEE-EeeC-------CCCCcceEEEEEECCHHHHHHHHHHhCCceeCCe-E
Q psy1534 31 LEVPVVMDLIQGDASLYQISHLSTVGDVTYVE-ILND-------DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR-K 101 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l~~F~~~G~V~~v~-i~~d-------~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr-~ 101 (587)
.+.-|.|=+.|...+...|++|++||+|.+.. +.++ +.-.....-.|+|.++.+|++||.+ ||..|.|. .
T Consensus 5 ~~~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CCeEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 34558888999998888889999999998875 1111 1001246889999999999999976 99999985 5
Q ss_pred EEEEecc
Q psy1534 102 LVIKEAV 108 (587)
Q Consensus 102 i~V~~a~ 108 (587)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.00 E-value=0.0016 Score=63.65 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=63.3
Q ss_pred CcEEEEecCCCCCcHHHH------HHHHHhcCCeeEEEEeeCCC--CCcce-E-EEEEecCHHHHHHHHHHhCCceeCCe
Q psy1534 159 INKVFVANLDYKVDEKKL------REVFRLAGKVENVEIALDKD--GKSRG-F-GTVEFDHPVEAVQSISMLNNQNLFER 228 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l------~~~F~~~G~i~~v~i~~~~~--g~~~g-~-afV~f~~~~~A~~Al~~l~g~~~~g~ 228 (587)
.+-+||-+||+.+-.|++ .++|.+||.|..|.|-+.-. ....+ + .||+|.+.|+|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 457899999988766652 58999999999988866431 11122 2 49999999999999999999999999
Q ss_pred EEEEEEccCC
Q psy1534 229 RITVRMDRVA 238 (587)
Q Consensus 229 ~l~v~~a~~~ 238 (587)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999886544
No 168
>KOG2202|consensus
Probab=96.91 E-value=0.0003 Score=66.56 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=50.3
Q ss_pred ccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 53 STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 53 ~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
.+||+|++++|..+-.-.-+|-+||.|...|+|++|++.||+..+.|++|...+..
T Consensus 91 ~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 91 DKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 39999999988776544567999999999999999999999999999999999887
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.86 E-value=0.0054 Score=53.75 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=54.6
Q ss_pred CCCCCCeEEEeCCC----CC-CChH----HHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceE
Q psy1534 512 SNIERDTVVVKNLP----PT-ITWQ----ELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKII 582 (587)
Q Consensus 512 ~~~~~~~v~V~~Lp----~~-~~~~----~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i 582 (587)
.+++..||.|+=+. .+ ...+ +|.+.|..||+|+-+++..+ +=+|.|.+-++|-+|+.. +|.+++|+.|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaals~-dg~~v~g~~l 99 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAALSL-DGIQVNGRTL 99 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHHHG-CCSEETTEEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHHcc-CCcEECCEEE
Confidence 34557799998444 21 2222 78889999999998888775 899999999999999985 9999999999
Q ss_pred EEEE
Q psy1534 583 DVTF 586 (587)
Q Consensus 583 ~v~~ 586 (587)
+|++
T Consensus 100 ~i~L 103 (146)
T PF08952_consen 100 KIRL 103 (146)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 170
>KOG4849|consensus
Probab=96.85 E-value=0.00088 Score=65.57 Aligned_cols=75 Identities=16% Similarity=0.320 Sum_probs=65.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCC--eeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGK--VENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..++||+||-|.+|++||.+.....|. +.+++++.++. |.++|||+|...+....++.++.|-.++|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 357899999999999999999887764 67888888885 9999999999999999999999999999998765553
No 171
>KOG1855|consensus
Probab=96.81 E-value=0.00082 Score=67.82 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=54.7
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC-------------------CCeEEEEECCHHHHHHHHHHhCCC
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK-------------------GDIGLVRFDSEWTAKRAIDMMDRT 575 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~-------------------~g~g~v~f~~~~~a~~Ai~~l~g~ 575 (587)
+.++|.++|||.+-..|.|.++|..+|.|..++|-.. +-||+|+|+..+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4579999999999999999999999999999998433 257999999999999999998665
Q ss_pred c
Q psy1534 576 R 576 (587)
Q Consensus 576 ~ 576 (587)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 4
No 172
>KOG1855|consensus
Probab=96.73 E-value=0.0013 Score=66.46 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=58.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeC---CC---CCc--------ceEEEEEecCHHHHHHHHHHhC
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD---KD---GKS--------RGFGTVEFDHPVEAVQSISMLN 221 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~---g~~--------~g~afV~f~~~~~A~~Al~~l~ 221 (587)
..++++|.+-|||.+-.-+.|.++|+.+|.|..|+|... +. +.+ +-+|+|+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346889999999999999999999999999999999887 31 222 4579999999999999999886
Q ss_pred Ccee
Q psy1534 222 NQNL 225 (587)
Q Consensus 222 g~~~ 225 (587)
...-
T Consensus 308 ~e~~ 311 (484)
T KOG1855|consen 308 PEQN 311 (484)
T ss_pred hhhh
Confidence 5443
No 173
>KOG2202|consensus
Probab=96.73 E-value=0.00073 Score=64.00 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=54.6
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 174 KKLREVFR-LAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 174 ~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
+||...|+ +||+|++++|-.+..-.-+|-++|.|...++|++|++.||+..+.|++|.+.+..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555666 8999999877765545557889999999999999999999999999999999865443
No 174
>KOG0115|consensus
Probab=96.62 E-value=0.005 Score=58.35 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=64.9
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC----ceeCCeEEEEEec
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR----FETKGRKLVIKEA 107 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g----~~l~gr~i~V~~a 107 (587)
..|||.||..-+..+.| +.|+.||+|+...++.|..++..+-++|+|...-.|.+|++.+.- ....+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999988 789999999998888888888889999999999999999998753 3345677777665
Q ss_pred c
Q psy1534 108 V 108 (587)
Q Consensus 108 ~ 108 (587)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 5
No 175
>KOG4849|consensus
Probab=96.62 E-value=0.0012 Score=64.71 Aligned_cols=75 Identities=11% Similarity=0.185 Sum_probs=65.7
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCC--CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVG--DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G--~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
.+||+||-|-+|.+|| +....-| .+.+++++.++ +|+|||||+|..-+....++-++.|-.++|+|+.-.|....
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 5899999999988888 7666656 67888999887 89999999999999999999999999999999877776665
No 176
>KOG1996|consensus
Probab=96.61 E-value=0.0046 Score=59.42 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=51.3
Q ss_pred HhcccCCCeEEEEEeeCCCC-Cc-ceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 50 SHLSTVGDVTYVEILNDDTG-KP-RGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 50 ~~F~~~G~V~~v~i~~d~~g-~s-kG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
+.+++||.|..|.|..+++- .. -=--||+|+..++|.+|+-.|||..|+||.++.++..-.+
T Consensus 305 eEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 305 EECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 56999999999998887522 11 1236999999999999999999999999999999887443
No 177
>KOG3152|consensus
Probab=96.59 E-value=0.0015 Score=61.67 Aligned_cols=72 Identities=26% Similarity=0.340 Sum_probs=60.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC---------CCcc----eEEEEEecCHHHHHHHHHHhCCce
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD---------GKSR----GFGTVEFDHPVEAVQSISMLNNQN 224 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------g~~~----g~afV~f~~~~~A~~Al~~l~g~~ 224 (587)
..-.||+++||+.+...-|+++|+.||.|-.|.+..... |.++ --|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 346899999999999999999999999999988876431 1222 237899999999999999999999
Q ss_pred eCCeE
Q psy1534 225 LFERR 229 (587)
Q Consensus 225 ~~g~~ 229 (587)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 178
>KOG1996|consensus
Probab=96.51 E-value=0.008 Score=57.82 Aligned_cols=64 Identities=23% Similarity=0.165 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 173 EKKLREVFRLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 173 e~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
++++++.+++||.|..|.|..++. -...---||+|+..++|.+|+-.|||+.|+||.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 357889999999999999888764 1112237999999999999999999999999998876643
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.35 E-value=0.028 Score=49.33 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCCCCcEEEEecCCC------CCcH---HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy1534 155 NCPLINKVFVANLDY------KVDE---KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~------~~te---~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 225 (587)
..|+..+|.|.=+.+ ...+ .+|.+.|..||++.-|++.-+ .-+|+|.+-+.|.+|+ .++|.++
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEE
Confidence 455666777775551 2222 367888999999888887754 4799999999999999 5699999
Q ss_pred CCeEEEEEEccCCCC
Q psy1534 226 FERRITVRMDRVADR 240 (587)
Q Consensus 226 ~g~~l~v~~a~~~~~ 240 (587)
.|+.|+|+...+..-
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999999776653
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.92 E-value=0.051 Score=40.42 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=45.3
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhc---CCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLA---GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l 220 (587)
.+|+|.++. +++.+||+.+|..| .....|.++-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 489999985 58899999999998 125688888875 4889999999999999764
No 181
>KOG0921|consensus
Probab=95.85 E-value=0.056 Score=60.18 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=6.5
Q ss_pred CCcceEEEEEecCH
Q psy1534 197 GKSRGFGTVEFDHP 210 (587)
Q Consensus 197 g~~~g~afV~f~~~ 210 (587)
|+.++|+--.|++.
T Consensus 899 g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDH 912 (1282)
T ss_pred cchhhccccccccc
Confidence 44444544444443
No 182
>KOG3152|consensus
Probab=95.81 E-value=0.0058 Score=57.83 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=57.3
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC------------------CCeEEEEECCHHHHHHHHHHhCCCcccC
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK------------------GDIGLVRFDSEWTAKRAIDMMDRTRIDG 579 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~------------------~g~g~v~f~~~~~a~~Ai~~l~g~~~~g 579 (587)
.|++++||.......|+.++..||+|-++-+-+. -.+|+|+|.+...|.+....||+..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 8999999999999999999999999977766321 0459999999999999999999999999
Q ss_pred ce
Q psy1534 580 KI 581 (587)
Q Consensus 580 ~~ 581 (587)
++
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 86
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.59 E-value=0.049 Score=42.72 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~ 93 (587)
|...-||-=-+|.++...|| ++|+.||.| .|.-+-| .-|||...+.+.|..|+..+.
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 34444554449999999999 999999998 5555555 579999999999999998876
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.46 E-value=0.087 Score=39.19 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=44.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcC---CeeEEEeecCCCeEEEEECCHHHHHHHHHHh
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCG---DIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM 572 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G---~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l 572 (587)
..|+|+|+. +.+-+|++.+|..|- ...+++-..+ ..+-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 389999995 688899999999991 2445565555 67899999999999999875
No 185
>KOG2591|consensus
Probab=95.32 E-value=0.039 Score=57.83 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=57.7
Q ss_pred cEEEEecCCCCCcHHHHHHHHHh--cCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEEc
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRL--AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN--QNLFERRITVRMD 235 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~~a 235 (587)
|.|.|+-||..+-+|+++.+|+. |-.+++|.+-.+. -=||+|++..||+.|.+.|.. ++|.|++|..++.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 68899999999999999999986 6678888876643 248999999999999988853 4677888777664
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.30 E-value=0.058 Score=46.65 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=59.8
Q ss_pred ccCCCCCCCcEEEcCCCCCCCH-HHH----HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC
Q psy1534 25 IETGAPLEVPVVMDLIQGDASL-YQI----SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG 99 (587)
Q Consensus 25 ~~~~~~~~~~vfV~nlp~~~t~-~~l----~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g 99 (587)
+....|+..+|.|+=|..++.- +|+ ...+.||+|.+|.+.- +-.|.|.|.+..+|-+|+.++.. ...|
T Consensus 79 k~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 79 KNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred ccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 3455678889999887777632 233 5579999999998763 45799999999999999998654 6778
Q ss_pred eEEEEEecc
Q psy1534 100 RKLVIKEAV 108 (587)
Q Consensus 100 r~i~V~~a~ 108 (587)
..+.+.|..
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 888888765
No 187
>KOG2416|consensus
Probab=94.99 E-value=0.02 Score=60.45 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHh-cCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CeEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF---ERRI 230 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l 230 (587)
....++.|||.||-.-+|.-.|+.++.. +|.|++.+|-+ -+..|||.|.+.++|...+.+|||..+- .+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3456899999999999999999999995 66676663322 2457999999999999999999998874 6778
Q ss_pred EEEEccCCC
Q psy1534 231 TVRMDRVAD 239 (587)
Q Consensus 231 ~v~~a~~~~ 239 (587)
.+.|.....
T Consensus 515 ~adf~~~de 523 (718)
T KOG2416|consen 515 IADFVRADE 523 (718)
T ss_pred EeeecchhH
Confidence 887766543
No 188
>KOG4285|consensus
Probab=94.22 E-value=0.15 Score=49.66 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=56.7
Q ss_pred cEEEcCCCCCCCHHHHHhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC-eEEEEEecccc
Q psy1534 34 PVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG-RKLVIKEAVED 110 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g-r~i~V~~a~~~ 110 (587)
=|=|=++|....--.|.+|++||+|.++... .+| .+-+|.|.+.-+|++||.. ||+.|.| ..|-|+.+..+
T Consensus 199 WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~--~ng---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQVSIVLNLFSRCGEVVKHVTP--SNG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccchhHHHHHHHhhCeeeeeecC--CCC---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 4667788888888888999999999886543 334 5899999999999999976 9999986 56677776633
No 189
>KOG2068|consensus
Probab=93.83 E-value=0.021 Score=56.59 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCcEEEcCCCCCCCH-HHH---HhcccCCCeEEEEEeeCCC--CCcc--eEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 32 EVPVVMDLIQGDASL-YQI---SHLSTVGDVTYVEILNDDT--GKPR--GSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~-~~l---~~F~~~G~V~~v~i~~d~~--g~sk--G~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
...+||-+|+..... ..| +.|.+||.|..|.+.++++ ..+- --++|+|...|+|..||...+|..+.++.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356888888876643 444 6799999999998888652 1111 1379999999999999999999999999988
Q ss_pred EEecccc
Q psy1534 104 IKEAVED 110 (587)
Q Consensus 104 V~~a~~~ 110 (587)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8777644
No 190
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.82 E-value=0.34 Score=37.75 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=42.9
Q ss_pred eEEEe-CCCCCCChHHHHHHHhhcCCe-----eEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 518 TVVVK-NLPPTITWQELRDKFRNCGDI-----KFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 518 ~v~V~-~Lp~~~~~~~l~~~f~~~G~v-----~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
|+||. +=-+.+++.+|..++...+.| -.++|..+ +.||+-... .|+.+++.|++..+.|++|+|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 55555 556788999999999998754 56666665 888887765 78999999999999999999975
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.77 E-value=0.29 Score=38.49 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=41.8
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDR 574 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g 574 (587)
...+|. .|..+.-.||.++|++||.|.-.=|.. ..|||...+++.+..|++.++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d--TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND--TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT--TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC--CcEEEEeecHHHHHHHHHHhcc
Confidence 344455 999999999999999999986555544 5999999999999999998863
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.74 E-value=0.17 Score=46.89 Aligned_cols=57 Identities=25% Similarity=0.195 Sum_probs=47.3
Q ss_pred hHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhC--CCcccCceEEEEE
Q psy1534 530 WQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMD--RTRIDGKIIDVTF 586 (587)
Q Consensus 530 ~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~--g~~~~g~~i~v~~ 586 (587)
.+.|+++|..++.++.....+.=+..+|.|.+.++|.+|...|+ +..|.|..++|.+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf 67 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYF 67 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE-
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEE
Confidence 57899999999998877777766889999999999999999999 9999999999875
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.59 E-value=0.32 Score=42.22 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=56.1
Q ss_pred CCCCcEEEEecCCCCCcH----HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 156 CPLINKVFVANLDYKVDE----KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
.++-.+|.|+=|..++.. ..+....+.||+|.+|.+.- +--|.|.|.+..+|-+|+.+++. ...|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 456678888776665433 34556677899999998764 34699999999999999999875 56678888
Q ss_pred EEEcc
Q psy1534 232 VRMDR 236 (587)
Q Consensus 232 v~~a~ 236 (587)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88743
No 194
>KOG2591|consensus
Probab=93.27 E-value=0.12 Score=54.26 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=56.8
Q ss_pred CCCCCCeEEEeCCCCCCChHHHHHHHhh--cCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCC--cccCceEE
Q psy1534 512 SNIERDTVVVKNLPPTITWQELRDKFRN--CGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT--RIDGKIID 583 (587)
Q Consensus 512 ~~~~~~~v~V~~Lp~~~~~~~l~~~f~~--~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~--~~~g~~i~ 583 (587)
....+|.|+++-||..+-.+++|.+|+. +-+++.|+.-.+ .-=+|+|++..||+.|.+.|... +|.|+.|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3445678889999999999999999986 557888888655 46799999999999999887654 56666654
No 195
>KOG2416|consensus
Probab=93.25 E-value=0.058 Score=57.03 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-Hhcc-cCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC---CeEEEEE
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLS-TVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK---GRKLVIK 105 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~-~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~---gr~i~V~ 105 (587)
..+-|||.||-.-.|+-+| ++.. ..|.|++.+|-+ -|-.|||.|.+.++|...+.+|||..+- .+.|.+.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 4457999999999999999 6665 788888886533 2467999999999999999999998874 6888888
Q ss_pred eccc
Q psy1534 106 EAVE 109 (587)
Q Consensus 106 ~a~~ 109 (587)
|...
T Consensus 518 f~~~ 521 (718)
T KOG2416|consen 518 FVRA 521 (718)
T ss_pred ecch
Confidence 8773
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.02 E-value=0.23 Score=45.91 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=49.1
Q ss_pred CCCcEEEcCCCCCCCHHHH-Hhccc-CCCe---EEEEEeeC--CCCC-cceEEEEEECCHHHHHHHHHHhCCceeCC---
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLST-VGDV---TYVEILND--DTGK-PRGSAIVEFQSPDLVRKAVNKMHRFETKG--- 99 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~-~G~V---~~v~i~~d--~~g~-skG~aFV~F~~~e~A~~Al~~l~g~~l~g--- 99 (587)
...+|.|++||+++|++++ +..+. ++.- ..+.-... .... .-.-|||.|.+.+++..-.+.++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4469999999999999987 55555 6665 34431222 2222 22569999999999999999999988754
Q ss_pred --eEEEEEecc
Q psy1534 100 --RKLVIKEAV 108 (587)
Q Consensus 100 --r~i~V~~a~ 108 (587)
.+..|+++.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 344555555
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.64 E-value=1.1 Score=37.73 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=49.1
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
..+.+...|..++-++|..+.+.+-. |..++|++|.. .++-.+.++|.+.++|.+-.+.+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444445555666677766666544 78889998764 24557899999999999999999999876
No 198
>KOG2135|consensus
Probab=92.62 E-value=0.065 Score=55.26 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=58.7
Q ss_pred CCeEEEeCCCCCC-ChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEEC
Q psy1534 516 RDTVVVKNLPPTI-TWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587 (587)
Q Consensus 516 ~~~v~V~~Lp~~~-~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~ 587 (587)
.+.+-+.-.|+.. |-.+|-.||.+||.|..|.|....-.|+|+|.+..+|..|-.- .+..|++|-|+|+|.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhcc-ccceecCceeEEEEe
Confidence 3455566555544 5678999999999999999977667899999999999888664 899999999999984
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.33 E-value=0.23 Score=45.95 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=51.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHh-cCCe---eEEEEeeCC--C-CCcceEEEEEecCHHHHHHHHHHhCCceeCC----
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRL-AGKV---ENVEIALDK--D-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE---- 227 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~--~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g---- 227 (587)
..+|.|++||+.+||+++.+.++. ++.- ..+.-.... . -....-|||.|.+.+++..-+..++|+.+.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 469999999999999999997776 5554 333312222 1 1223459999999999999999999988752
Q ss_pred -eEEEEEEccCCC
Q psy1534 228 -RRITVRMDRVAD 239 (587)
Q Consensus 228 -~~l~v~~a~~~~ 239 (587)
.+..|++|-.+.
T Consensus 87 ~~~~~VE~Apyqk 99 (176)
T PF03467_consen 87 EYPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEEE-SS--
T ss_pred CcceeEEEcchhc
Confidence 356677776543
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.27 E-value=0.91 Score=42.17 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEEccCCC
Q psy1534 172 DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN--NQNLFERRITVRMDRVAD 239 (587)
Q Consensus 172 te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~~a~~~~ 239 (587)
..+.|+++|..|+.+....+++. -+-..|.|.+.++|.+|...|+ +..+.|..++|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999888877764 3458999999999999999999 999999999999985443
No 201
>KOG3285|consensus
Probab=89.99 E-value=0.38 Score=43.11 Aligned_cols=44 Identities=41% Similarity=0.819 Sum_probs=39.7
Q ss_pred hHHHHHHhhhccccceeEEEEeccCccceeeeeceeeeeecCCC
Q psy1534 264 PLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSD 307 (587)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (587)
.+.++.+|+....++++++++++..++|++|+|+|.+..+....
T Consensus 67 ilsQ~~~WL~~~kiqklvlvI~~~~tgEvlErWqFnie~~~~~~ 110 (203)
T KOG3285|consen 67 ILSQVHEWLSKGKIQKLVLVITSKHTGEVLERWQFNIETENTAS 110 (203)
T ss_pred HHHHHHHHHHhCCcceEEEEEEecccccchhheeeeeeeecccc
Confidence 67889999999999999999999999999999999998776443
No 202
>KOG4574|consensus
Probab=89.79 E-value=0.29 Score=54.15 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=64.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEccCC
Q psy1534 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF--ERRITVRMDRVA 238 (587)
Q Consensus 161 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~a~~~ 238 (587)
+.++.|.+-..+...|..+|++||.|.+++.+++- -.|.|+|.+.+.|..|+++|+|+++. |-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34445556667778899999999999999998874 37999999999999999999999864 889999998877
Q ss_pred CCCCCC
Q psy1534 239 DRLDGP 244 (587)
Q Consensus 239 ~~~~~~ 244 (587)
+..+.+
T Consensus 375 ~~~ep~ 380 (1007)
T KOG4574|consen 375 PMYEPP 380 (1007)
T ss_pred ccccCC
Confidence 654433
No 203
>KOG4574|consensus
Probab=89.26 E-value=0.19 Score=55.46 Aligned_cols=74 Identities=20% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC--CeEEEEEe
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK--GRKLVIKE 106 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~--gr~i~V~~ 106 (587)
|-..+.++.|.+-..+-..| .+|++||.|.+.+.+++ -..|.|+|.+.|.|..|+++|+|+++. |-+.+|.+
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 34446677777778888888 78999999999999987 357999999999999999999997764 78888888
Q ss_pred cc
Q psy1534 107 AV 108 (587)
Q Consensus 107 a~ 108 (587)
++
T Consensus 371 ak 372 (1007)
T KOG4574|consen 371 AK 372 (1007)
T ss_pred cc
Confidence 87
No 204
>KOG2068|consensus
Probab=88.74 E-value=0.14 Score=50.94 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=60.7
Q ss_pred cEEEEecCCCCCcHHHHH---HHHHhcCCeeEEEEeeCCC--CCc--ceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 160 NKVFVANLDYKVDEKKLR---EVFRLAGKVENVEIALDKD--GKS--RGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~--g~~--~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
+.+||-+|+..+..+++. +.|.+||.|..|.+.++.. ... ..-++|+|...++|..||...+|..+.|+.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888888876555543 5788999999998888762 111 112799999999999999999999999999777
Q ss_pred EEccCC
Q psy1534 233 RMDRVA 238 (587)
Q Consensus 233 ~~a~~~ 238 (587)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 665544
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.55 E-value=2.9 Score=33.63 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=50.1
Q ss_pred EEEEECCHHHHHHHHHHhCC--ceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhcc
Q psy1534 75 AIVEFQSPDLVRKAVNKMHR--FETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL 152 (587)
Q Consensus 75 aFV~F~~~e~A~~Al~~l~g--~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (587)
|+|+|.+++-|++-++. .. ..+.+..+.|....-.... ..++ .
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~---------------------~~k~----------q--- 45 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGH---------------------LQKF----------Q--- 45 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCC---------------------ceEE----------E---
Confidence 68999999999999964 33 4456666666554411100 0000 0
Q ss_pred CCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC
Q psy1534 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD 196 (587)
Q Consensus 153 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 196 (587)
-......++|-|.|||..+++++|++. .++.+-+.++
T Consensus 46 v~~~vs~rtVlvsgip~~l~ee~l~D~-------LeIhFqK~sn 82 (88)
T PF07292_consen 46 VFSGVSKRTVLVSGIPDVLDEEELRDK-------LEIHFQKPSN 82 (88)
T ss_pred EEEcccCCEEEEeCCCCCCChhhheee-------EEEEEecCCC
Confidence 002234578999999999999999864 4565655544
No 206
>KOG4285|consensus
Probab=88.49 E-value=1.6 Score=42.78 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=53.8
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCce
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKI 581 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~ 581 (587)
.++=|.|.+.|.... .-|..+|.+||.|+..---.+...=.|.|.++-+|++||.+ ||+.|.|..
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 467899999987655 45778999999987554445557899999999999999998 999999875
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.29 E-value=2.5 Score=32.00 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 170 KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 170 ~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
.++-++++..+..|. ... |..|+ .|| ||.|.+.++|+++....+++.+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999995 333 44454 355 89999999999999999999888777654
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.25 E-value=28 Score=34.38 Aligned_cols=189 Identities=13% Similarity=0.240 Sum_probs=109.8
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC--------CCCcceEEEEEECCHHHHHH----HHHHhCC--ce
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD--------TGKPRGSAIVEFQSPDLVRK----AVNKMHR--FE 96 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~--------~g~skG~aFV~F~~~e~A~~----Al~~l~g--~~ 96 (587)
.|.|...|+..+++...+ ..|-+||+|++|.++.+. ..+..-...+.|-+.+.+-. .++.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999999887 889999999999999875 22334678999999988754 4444443 55
Q ss_pred eCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHH
Q psy1534 97 TKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKL 176 (587)
Q Consensus 97 l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l 176 (587)
+....|.+.+..-+...... +......+ ..+ . ...+.-.-.....++.|.|. +...+.++++
T Consensus 95 L~S~~L~lsFV~l~y~~~~~--------------~~~~~~~~-~~~-~-~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl 156 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTD--------------PNDEEADF-SDY-L-VASLQYNIINRGATRSLAIE-FKDPVDKDDL 156 (309)
T ss_pred cCCcceeEEEEEEecccccc--------------ccccccch-hhH-H-hhhhhheeecCCcceEEEEE-ecCccchhHH
Confidence 77788888877621110000 00000000 000 0 00000011123345667775 3344433332
Q ss_pred -HHHH---HhcC----CeeEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhC--CceeC-CeEEEEEEccCC
Q psy1534 177 -REVF---RLAG----KVENVEIALDKD---GKSRGFGTVEFDHPVEAVQSISMLN--NQNLF-ERRITVRMDRVA 238 (587)
Q Consensus 177 -~~~F---~~~G----~i~~v~i~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~-g~~l~v~~a~~~ 238 (587)
.+.+ ..-+ .+++|.|+.-.. .-++-||.++|-+..-|.+.++.+. ..... .+...|.++...
T Consensus 157 ~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 157 IEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred HHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 2222 1112 367788776432 4567799999999999999888775 33333 455666665433
No 209
>KOG0804|consensus
Probab=87.16 E-value=2.2 Score=44.20 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=58.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
++.|+|-.+|..++-.||..|+..+-. |.+++|++|... .+=..+|+|.+.++|..-.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 788999999999999999999987654 899999997642 2345899999999999999999999876
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.88 E-value=3.2 Score=32.22 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=36.4
Q ss_pred CCcHHHHHHHHHhcCC-----eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 170 KVDEKKLREVFRLAGK-----VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 170 ~~te~~l~~~F~~~G~-----i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.++..+|..++...+. |-.|.|..+ |+||+-.. +.|.++++.|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788899888887655 456777653 89999876 4899999999999999999999875
No 211
>KOG2135|consensus
Probab=85.98 E-value=0.48 Score=49.12 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=58.3
Q ss_pred cEEEEecCCCCC-cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 160 NKVFVANLDYKV-DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 160 ~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
+.|-+.-.|+.. +-++|...|.+||+|..|.+-... --|.|+|.+..+|-+|. ..++..|.+|.|+|.|..+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 444455556553 458899999999999999886542 35899999999998886 45899999999999998774
Q ss_pred C
Q psy1534 239 D 239 (587)
Q Consensus 239 ~ 239 (587)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 212
>KOG2253|consensus
Probab=85.92 E-value=1.5 Score=47.59 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred CCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEE
Q psy1534 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584 (587)
Q Consensus 514 ~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v 584 (587)
.+..+|||.|+...+..+-++.....+|.|..++... +||++|..+....+|+..+.-..+++.++-+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3467999999999999999999999999998887755 9999999999999999999999998887644
No 213
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.45 E-value=7.9 Score=32.66 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=47.2
Q ss_pred CcEEEcC-CCCCCCHHHHHhc-ccCC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC
Q psy1534 33 VPVVMDL-IQGDASLYQISHL-STVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG 99 (587)
Q Consensus 33 ~~vfV~n-lp~~~t~~~l~~F-~~~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g 99 (587)
..|.|=- .|+-++-++|-.| +.+- .|..++|++|.+. ++=-+.++|.+.++|+.-.+.+||+.|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3454444 4555566666433 4443 5788999998543 45678999999999999999999988864
No 214
>KOG2253|consensus
Probab=83.62 E-value=0.74 Score=49.85 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=63.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
+.++..++||+|+...+..+-++.+...+|.|.++.... |+|+.|..+.-..+|+..++-..+.+..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345667999999999999999999999999998876654 999999999999999999988888888877766
Q ss_pred c
Q psy1534 235 D 235 (587)
Q Consensus 235 a 235 (587)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 4
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.19 E-value=7.8 Score=29.35 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEE
Q psy1534 526 PTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584 (587)
Q Consensus 526 ~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v 584 (587)
..++-+|+|..++.| ...+|..++.-=+|.|.+..+|++..+..|+..+...++.+
T Consensus 10 ~~~~v~d~K~~Lr~y---~~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKY---RWDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcC---CcceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356788999999999 44555555434478999999999999999999988777654
No 216
>KOG4213|consensus
Probab=76.07 E-value=1.4 Score=39.72 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=50.4
Q ss_pred CCCcEEEcCCCCCCCHHHHHhcccCCCeEEEEEeeCCCC--CcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 31 LEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTG--KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l~~F~~~G~V~~v~i~~d~~g--~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
..+++|.+ |++...++|..|.. |.+..|.+-+...+ ..+|--||+|.+.++|..+++. +......+.|.
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~-~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~ 180 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS-GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELK 180 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc-ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHH
Confidence 45578888 77777777755655 89999877665444 6789999999999999998876 44444444433
No 217
>KOG2318|consensus
Probab=74.51 E-value=14 Score=39.78 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=62.7
Q ss_pred CCCCcEEEEecCCCC-CcHHHHHHHHHhc----CCeeEEEEeeCCC-----------CC---------------------
Q psy1534 156 CPLINKVFVANLDYK-VDEKKLREVFRLA----GKVENVEIALDKD-----------GK--------------------- 198 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~-----------g~--------------------- 198 (587)
...+++|-|-|+.|+ +.-.||.-+|..| |.|.+|.|....- |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 8889999998865 5799998865321 11
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEc
Q psy1534 199 ----------------SRGFGTVEFDHPVEAVQSISMLNNQNLF--ERRITVRMD 235 (587)
Q Consensus 199 ----------------~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~a 235 (587)
..-||.|+|.+.+.|.+..+.++|..+. +..|.++|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1237999999999999999999999987 555666653
No 218
>KOG3973|consensus
Probab=72.32 E-value=28 Score=35.05 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=6.1
Q ss_pred EEEecCCCCCcHHH
Q psy1534 162 VFVANLDYKVDEKK 175 (587)
Q Consensus 162 l~V~nLp~~~te~~ 175 (587)
|-+...|.++++-.
T Consensus 152 L~~~k~p~Nin~~~ 165 (465)
T KOG3973|consen 152 LNFPKQPGNINEWK 165 (465)
T ss_pred cCCCCCCCCchHHH
Confidence 33333444555543
No 219
>KOG0804|consensus
Probab=64.01 E-value=21 Score=37.26 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcC-CeeEEEeecCC----CeEEEEECCHHHHHHHHHHhCCCcccC
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCG-DIKFAEIKGKG----DIGLVRFDSEWTAKRAIDMMDRTRIDG 579 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G-~v~~~~~~~~~----g~g~v~f~~~~~a~~Ai~~l~g~~~~g 579 (587)
...|.|.-+|.-.|..||..|.-+|- .|...++.++. =...+.|++.++|..=-+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 56899999999999999999999887 47888887752 348899999999999999999999874
No 220
>KOG4410|consensus
Probab=63.15 E-value=19 Score=35.16 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=38.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCe-eEEEEeeCCCCCcceEEEEEecCHH
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKV-ENVEIALDKDGKSRGFGTVEFDHPV 211 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~ 211 (587)
....+-|+++|||.++.-.||+..+.+.+.+ .++.+.- +.|-||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 3345679999999999999999999887653 4444432 3678999997743
No 221
>KOG2318|consensus
Probab=60.93 E-value=43 Score=36.24 Aligned_cols=72 Identities=24% Similarity=0.244 Sum_probs=57.3
Q ss_pred CCCeEEEeCCCCC-CChHHHHHHHhhc----CCeeEEEeecC--------------C-----------------------
Q psy1534 515 ERDTVVVKNLPPT-ITWQELRDKFRNC----GDIKFAEIKGK--------------G----------------------- 552 (587)
Q Consensus 515 ~~~~v~V~~Lp~~-~~~~~l~~~f~~~----G~v~~~~~~~~--------------~----------------------- 552 (587)
+..||-|.||.|+ +...||.-+|..| |.|.++.|.+. +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3579999999875 6778898888876 47888887221 0
Q ss_pred ----------------CeEEEEECCHHHHHHHHHHhCCCccc--CceEEEEE
Q psy1534 553 ----------------DIGLVRFDSEWTAKRAIDMMDRTRID--GKIIDVTF 586 (587)
Q Consensus 553 ----------------g~g~v~f~~~~~a~~Ai~~l~g~~~~--g~~i~v~~ 586 (587)
=+|+|+|++.+.|...-+.++|.+|. +.+|.+++
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 15999999999999999999999997 55676665
No 222
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=59.46 E-value=47 Score=24.24 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCH----HHHHHHHHH
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSE----WTAKRAIDM 571 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~----~~a~~Ai~~ 571 (587)
|+.|.||--.--...++..+...-.|..+.+....+...|+|+.. ++...+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 567888888888899999999999999999998889999999843 677777776
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.61 E-value=14 Score=31.44 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=31.2
Q ss_pred eEEEeCCCCCC---------ChHHHHHHHhhcCCeeEEEeecC---CCeEEEEEC-CHHHHHHHHHH
Q psy1534 518 TVVVKNLPPTI---------TWQELRDKFRNCGDIKFAEIKGK---GDIGLVRFD-SEWTAKRAIDM 571 (587)
Q Consensus 518 ~v~V~~Lp~~~---------~~~~l~~~f~~~G~v~~~~~~~~---~g~g~v~f~-~~~~a~~Ai~~ 571 (587)
+++|-|+|.+. +-++|++.|+.|..+...-+..+ .++++|+|. +-.-...|++.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 78888886543 67899999999987754444222 478999999 66666666654
No 224
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.67 E-value=46 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=42.1
Q ss_pred EEEecCCCCCcHHHHHHHHHh-cCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy1534 162 VFVANLDYKVDEKKLREVFRL-AGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 162 l~V~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
-|+--++...+..+|++.++. |+. |.+|..+.-+.+ ..-|||++....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHh
Confidence 445557899999999999988 654 788877765533 23599999998888877544
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.82 E-value=62 Score=25.36 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHh-cCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy1534 161 KVFVANLDYKVDEKKLREVFRL-AGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 161 ~l~V~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
.-|+-.++...+..+|++.++. |+. |.+|..+.-+.+ ..-|||++...++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 3456668999999999999987 553 677776665532 23599999988888776544
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.19 E-value=44 Score=26.70 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=43.4
Q ss_pred cEEEcCCCCCCCHHHH-Hhccc-CC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh
Q psy1534 34 PVVMDLIQGDASLYQI-SHLST-VG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKM 92 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~-~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l 92 (587)
+.|+=-.+.+++..+| +.+++ || +|.+|+.+.-+.+. -=|||++...++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 5677777889999999 56655 66 78999988776442 34999999999998876543
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.22 E-value=11 Score=32.25 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=28.1
Q ss_pred cEEEcCCCCCCC---------HHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHH
Q psy1534 34 PVVMDLIQGDAS---------LYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLV 85 (587)
Q Consensus 34 ~vfV~nlp~~~t---------~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A 85 (587)
.+.|-|+|.+.+ -++| +.|+.|.+++ |+.+.++.| +.|++.|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChHH
Confidence 467778876543 2345 7788899974 777777665 679999999877654
No 228
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=49.41 E-value=72 Score=24.78 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=42.4
Q ss_pred EEEeCCCCCCChHHHHHHHhhcCCee--EEEee-cCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 519 VVVKNLPPTITWQELRDKFRNCGDIK--FAEIK-GKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 519 v~V~~Lp~~~~~~~l~~~f~~~G~v~--~~~~~-~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
++.-.+|..++++||.......=.+. ...+. .+..--+|...+.+|.+.||+.+.... .+.++|.+
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~--~~~l~l~v 80 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLG--SKKLRLHV 80 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcC--CceEEEEe
Confidence 33344888999999988866432221 23331 121122999999999999999875433 45566654
No 229
>KOG4019|consensus
Probab=47.05 E-value=18 Score=33.14 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=51.7
Q ss_pred eEEEeCCCCCCCh-----HHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCc-eEEEE
Q psy1534 518 TVVVKNLPPTITW-----QELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGK-IIDVT 585 (587)
Q Consensus 518 ~v~V~~Lp~~~~~-----~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~-~i~v~ 585 (587)
++++.+++..+-. .+.+.+|++|-+.....+.+..+.-.|.|.+++.|..|..+++...|.|+ .+++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 5777777655432 23456777777776666666657778999999999999999999999998 66554
No 230
>KOG4019|consensus
Probab=46.74 E-value=18 Score=33.07 Aligned_cols=76 Identities=9% Similarity=0.164 Sum_probs=54.4
Q ss_pred cEEEEecCCCCCcH-----HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe-EEEEE
Q psy1534 160 NKVFVANLDYKVDE-----KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER-RITVR 233 (587)
Q Consensus 160 ~~l~V~nLp~~~te-----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~v~ 233 (587)
+.+++.+++..+.. .....+|..|-+....++++. .++.-|.|.+++.|..|...++...+.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45677777765332 334566666666555555543 45678899999999999999999999988 78887
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
++.....
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 7766553
No 231
>KOG4483|consensus
Probab=46.62 E-value=47 Score=34.14 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=45.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
-..|-|.++|.....+||...|+.|+. --+|+++-|. .+|-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 467889999999999999999999976 3556666653 699999999999999854
No 232
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=45.17 E-value=15 Score=32.68 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=59.2
Q ss_pred ceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhc
Q psy1534 72 RGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLES 151 (587)
Q Consensus 72 kG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (587)
.++..++|.+.+++.++++. ....+.+..+.++...+..... ...+
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~--------------------~~~~------------- 100 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPS--------------------EVKF------------- 100 (153)
T ss_pred CCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccc--------------------ccce-------------
Confidence 37999999999999999964 5567788888887766322100 0000
Q ss_pred cCCCCCCCcEEEEecCCCC-CcHHHHHHHHHhcCCeeEEEEee
Q psy1534 152 LGINCPLINKVFVANLDYK-VDEKKLREVFRLAGKVENVEIAL 193 (587)
Q Consensus 152 ~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~ 193 (587)
.....-|.|.|||.. .+++-++.+.+.+|.+..+....
T Consensus 101 ----~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 101 ----EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ----eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 001124667899987 77888999999999998887554
No 233
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.04 E-value=36 Score=33.68 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC--------CCCcceEEEEEecCHHHHHHH----HHHhC--Cc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK--------DGKSRGFGTVEFDHPVEAVQS----ISMLN--NQ 223 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--------~g~~~g~afV~f~~~~~A~~A----l~~l~--g~ 223 (587)
.++.|...|+..+++-..+...|-+||.|++|.++.+. +.+......+.|-+.+.+..- ++.|. .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999876 233345688999998876442 22332 24
Q ss_pred eeCCeEEEEEEcc
Q psy1534 224 NLFERRITVRMDR 236 (587)
Q Consensus 224 ~~~g~~l~v~~a~ 236 (587)
.+....|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4666777777654
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.72 E-value=72 Score=25.00 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=43.2
Q ss_pred cEEEcCCCCCCCHHHH-Hhccc-CC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh
Q psy1534 34 PVVMDLIQGDASLYQI-SHLST-VG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKM 92 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~-~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l 92 (587)
+-|+=..+.+++..+| +.++. |+ +|.+|+.+.-+.+. -=|||++...++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHhh
Confidence 5777788899999999 56655 56 78898888766442 34999999999888765443
No 235
>PRK11901 hypothetical protein; Reviewed
Probab=40.22 E-value=1.1e+02 Score=31.10 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=38.5
Q ss_pred CCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEe---ecCCC--eEEE--EECCHHHHHHHHHHhCC
Q psy1534 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI---KGKGD--IGLV--RFDSEWTAKRAIDMMDR 574 (587)
Q Consensus 513 ~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~---~~~~g--~g~v--~f~~~~~a~~Ai~~l~g 574 (587)
....|+|-|..+. ++++|++|.+.++. ....| .++.. |-.| .|.+.++|+.||+.|--
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~L-~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQNL-SHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcCc-CceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3347899987754 58889999998862 22222 22211 2222 68999999999998854
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.69 E-value=54 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=22.9
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 75 AIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 75 aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
|||+|++.++|..|++.+.... .+.+.++.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999998644322 3444565555
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.30 E-value=96 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCeeEEEE
Q psy1534 174 KKLREVFRLAGKVENVEI 191 (587)
Q Consensus 174 ~~l~~~F~~~G~i~~v~i 191 (587)
++|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999865544
No 238
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=33.81 E-value=1.4e+02 Score=32.63 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=61.7
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeCCeEEE-----EEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhh
Q psy1534 74 SAIVEFQSPDLVRKAVNKMHRFETKGRKLV-----IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQF 148 (587)
Q Consensus 74 ~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~-----V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (587)
-||+++.+++.-+--.+.|+...+.+-.|. -+++...+.-| | ...+..
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvr-----------------------F----~dK~~H 290 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVR-----------------------F----ADKERH 290 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhcc-----------------------C----CCCccc
Confidence 599999999988888888776655543222 12222111100 0 001111
Q ss_pred hhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEec
Q psy1534 149 LESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFD 208 (587)
Q Consensus 149 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~ 208 (587)
.--.+++......||+.+|+.++.++-=.++....-..+.+.|++ .||| |+|+
T Consensus 291 qIFlEPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r------pgYA-IEYD 343 (621)
T COG0445 291 QIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR------PGYA-IEYD 343 (621)
T ss_pred eEEecCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec------ccee-eeec
Confidence 112233455577999999999988887777777666678899887 4676 5554
No 239
>KOG4483|consensus
Probab=32.69 E-value=78 Score=32.67 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=44.6
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHH
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDM 571 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~ 571 (587)
-..|-|++.|...--+||-..|..|++=-+-..-.+...++..|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 36889999999999999999999998632222223346889999999999999875
No 240
>KOG4410|consensus
Probab=32.09 E-value=60 Score=31.85 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=38.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCe-eEEEeecCCCeEEEEECCHH
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDI-KFAEIKGKGDIGLVRFDSEW 563 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v-~~~~~~~~~g~g~v~f~~~~ 563 (587)
.-|+|.|||-++.-.|||.-.+..+.+ .++.-..+.+.+|..|.++.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 469999999999999999999999865 44444555689999998653
No 241
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.81 E-value=31 Score=27.78 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=22.1
Q ss_pred CCCCCCeEEEeCCCCCCChHHHHHHHh
Q psy1534 512 SNIERDTVVVKNLPPTITWQELRDKFR 538 (587)
Q Consensus 512 ~~~~~~~v~V~~Lp~~~~~~~l~~~f~ 538 (587)
.++...+|-|.|||...++++|+|...
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 344567999999999999999998754
No 242
>KOG2891|consensus
Probab=31.77 E-value=30 Score=33.61 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCCCCCcEEEcCCCCCC------------CHHHH-HhcccCCCeEEEEEee
Q psy1534 27 TGAPLEVPVVMDLIQGDA------------SLYQI-SHLSTVGDVTYVEILN 65 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~------------t~~~l-~~F~~~G~V~~v~i~~ 65 (587)
.++..+.+||+-+||-.| +++.| ..|+.||.|..|.|+.
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345677799999999543 33445 6799999999998864
No 243
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.35 E-value=1.6e+02 Score=30.58 Aligned_cols=39 Identities=31% Similarity=0.458 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecCCCC-CcHHHHHHHHHhc----CCeeEEEEee
Q psy1534 155 NCPLINKVFVANLDYK-VDEKKLREVFRLA----GKVENVEIAL 193 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~ 193 (587)
...++++|-|-|+.|+ +...||..+|+.| |.|..|.|..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 3567889999999996 8889999998865 5577777753
No 244
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=31.11 E-value=1.6e+02 Score=22.87 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=41.0
Q ss_pred eCCCCCCChHHHHHHHhh-cCCe-eEEEe---ecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEE
Q psy1534 522 KNLPPTITWQELRDKFRN-CGDI-KFAEI---KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVT 585 (587)
Q Consensus 522 ~~Lp~~~~~~~l~~~f~~-~G~v-~~~~~---~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~ 585 (587)
-.++..+++++|....+. |+.. ....+ ..+ | -.|...+-+|.+.|++.+... +++.++|.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~d-g-D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDED-G-DLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETT-S-SEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCC-C-CEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 347888899999988875 4431 11222 122 2 499999999999999998665 44455554
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=28.56 E-value=78 Score=24.11 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=43.6
Q ss_pred HhcccCC-CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 50 SHLSTVG-DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 50 ~~F~~~G-~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
+.|...| +|.+|.-++.+ ++.....-||+.+...+..++ ++=..+++..|+|++..++
T Consensus 6 ~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 6 EELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 5677778 78898888886 777778889999887774444 3456788999999887643
No 246
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=28.10 E-value=69 Score=24.44 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHH-HhcccCC-CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 47 YQI-SHLSTVG-DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 47 ~~l-~~F~~~G-~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
.+| +.|++.| +|..|.-+..+ ++.....=||+.....+-.. -|+=+.+++++|.|+...+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
No 247
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.92 E-value=2.5e+02 Score=20.65 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=31.7
Q ss_pred CHHHH-HhcccCC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCce
Q psy1534 45 SLYQI-SHLSTVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96 (587)
Q Consensus 45 t~~~l-~~F~~~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~ 96 (587)
...++ ++|.+.| .|.++.+....+ +++--+.+.+.+.|.++++. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 44555 7787777 788887655322 36666677777788888866 4543
No 248
>COG4907 Predicted membrane protein [Function unknown]
Probab=27.58 E-value=54 Score=34.50 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=5.2
Q ss_pred cccCCCeEEEEEe
Q psy1534 52 LSTVGDVTYVEIL 64 (587)
Q Consensus 52 F~~~G~V~~v~i~ 64 (587)
|+-|+-++..+..
T Consensus 62 ~eG~~y~~~~rd~ 74 (595)
T COG4907 62 AEGYGYITSLRDF 74 (595)
T ss_pred ccccceEEEEeec
Confidence 3444444433333
No 249
>COG4371 Predicted membrane protein [Function unknown]
Probab=27.16 E-value=1e+02 Score=29.79 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=6.9
Q ss_pred CChHHHHHHHhhc
Q psy1534 528 ITWQELRDKFRNC 540 (587)
Q Consensus 528 ~~~~~l~~~f~~~ 540 (587)
+.-+|||.-....
T Consensus 155 A~a~elk~eL~~i 167 (334)
T COG4371 155 AEADELKSELQRI 167 (334)
T ss_pred hhhHHHHHHHHHH
Confidence 3455666655543
No 250
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.10 E-value=2.4e+02 Score=25.04 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=38.4
Q ss_pred EEEecCCCCCcHHHHHHHHHh-cCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHH
Q psy1534 162 VFVANLDYKVDEKKLREVFRL-AGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSI 217 (587)
Q Consensus 162 l~V~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al 217 (587)
-|+--++...+..+|++.++. |+. |..|..+.-+.|.- -|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 445557889999999999987 653 67777666554332 4999998777765443
No 251
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.87 E-value=2.1e+02 Score=21.07 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=33.7
Q ss_pred eEEEeCCCCC-CChHHHHHHHhhcC-CeeEEEeecC--CCeEEEEECCHHHHHHHHHHhCCCc
Q psy1534 518 TVVVKNLPPT-ITWQELRDKFRNCG-DIKFAEIKGK--GDIGLVRFDSEWTAKRAIDMMDRTR 576 (587)
Q Consensus 518 ~v~V~~Lp~~-~~~~~l~~~f~~~G-~v~~~~~~~~--~g~g~v~f~~~~~a~~Ai~~l~g~~ 576 (587)
++.|. +|.. ..-.++-..|.+.| .|.+.-+... +..-.+.+++.+.+.++++. +|++
T Consensus 3 ri~v~-v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 3 QLSVF-LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred EEEEE-EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 44443 4443 35668889999988 6777666443 23344455666666666655 4444
No 252
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=25.77 E-value=1.5e+02 Score=23.44 Aligned_cols=58 Identities=10% Similarity=0.077 Sum_probs=39.9
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCe--eEEEeec--CCCeEEEEECCHHHHHHHHHHhCCCc
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDI--KFAEIKG--KGDIGLVRFDSEWTAKRAIDMMDRTR 576 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v--~~~~~~~--~~g~g~v~f~~~~~a~~Ai~~l~g~~ 576 (587)
++|.|+ .|.+.+.++|.+..+.-=++ ....+.. .....+|.. +.++++.|+....+..
T Consensus 11 ~tIaIr-vp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~~~~ 72 (80)
T cd06406 11 YTVAIQ-VARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDVWSQAKDGC 72 (80)
T ss_pred EEEEEE-cCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHHHHhhcCCe
Confidence 466666 89999999999888754444 3333321 123355666 8999999999877654
No 253
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=25.77 E-value=1.3e+02 Score=22.89 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCC-eeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 174 KKLREVFRLAGK-VENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 174 ~~l~~~F~~~G~-i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
++|.+.|...|- |..+.-+..+ +..+--.-||+.+...+..+ .++=+.+++..|+|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 467777887775 7777777666 46666778888877655333 34556788888888765443
No 254
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=24.96 E-value=3.5e+02 Score=21.46 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=40.1
Q ss_pred CCC--CCChHHHHHHHhhcCCeeEEEee-cCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 524 LPP--TITWQELRDKFRNCGDIKFAEIK-GKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 524 Lp~--~~~~~~l~~~f~~~G~v~~~~~~-~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
|+. .++|++|+...+..=.+....+. .+--.=.|...+..+.+.|++.+... |+.|+++.
T Consensus 16 ~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~---~~~l~~~v 78 (81)
T cd06396 16 VSDSENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEEALKSAVRQ---GNLLQMNV 78 (81)
T ss_pred ecCCCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHHHHHHHHhC---CCEEEEEE
Confidence 777 88999999988765544322221 01112388899999999999976554 46666654
No 255
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=22.81 E-value=3.4e+02 Score=20.83 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=33.4
Q ss_pred hHHHHHHHhhcCCeeEEEeecC--CCeEEEEECCHHHHHHHHHHhC
Q psy1534 530 WQELRDKFRNCGDIKFAEIKGK--GDIGLVRFDSEWTAKRAIDMMD 573 (587)
Q Consensus 530 ~~~l~~~f~~~G~v~~~~~~~~--~g~g~v~f~~~~~a~~Ai~~l~ 573 (587)
-.++++..+.+| +..+.+... .++-|+-+++.++++++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 357888889998 666777554 5788888889999998888763
No 256
>KOG2295|consensus
Probab=22.77 E-value=15 Score=39.30 Aligned_cols=72 Identities=10% Similarity=-0.008 Sum_probs=52.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFER 228 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 228 (587)
...|.||+.|+++.++-++|..+|+.+-.+..+.+-.+.- .+...+..|+|+---....|+.+||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 3568899999999999999999999886666655443321 33345678899877777777777777665533
No 257
>KOG1295|consensus
Probab=22.18 E-value=90 Score=32.19 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=48.8
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCC-eeEEEeecC--------CCeEEEEECCHHHHHHHHHHhCCCcc
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGD-IKFAEIKGK--------GDIGLVRFDSEWTAKRAIDMMDRTRI 577 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~-v~~~~~~~~--------~g~g~v~f~~~~~a~~Ai~~l~g~~~ 577 (587)
..|.|++||...+.++|.....+|-. |.+...... ...+.|.|.++++...=.+.++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 58999999999999999999999863 444333211 26799999999998888888888876
No 258
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.10 E-value=1.9e+02 Score=25.63 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=40.2
Q ss_pred CcEEEcCCCCCCCHHHH-Hhccc-CC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHH
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLST-VG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAV 89 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~-~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al 89 (587)
.+-||=-.+...+..+| +.+++ |+ .|..|..+.-+.|.- =|||.+....+|....
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 35777777888999999 56665 66 688888887665532 4899998887765543
No 259
>KOG1295|consensus
Probab=21.86 E-value=93 Score=32.06 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=46.9
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCC-eeEEEEeeCC-C--CCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDK-D--GKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~-~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
-++|.|.+||+..++++|.+-..++-. +....+.... . ..-.+.++|.|...++...-...++|+.+-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 368999999999999998887766432 2222232111 1 222567999999999977777777877654
No 260
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=21.07 E-value=1.9e+02 Score=24.40 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=28.4
Q ss_pred CCCCCcHHHHHHHHHh---cCCeeEEEEeeCC-CCCcceEEEEEecCH
Q psy1534 167 LDYKVDEKKLREVFRL---AGKVENVEIALDK-DGKSRGFGTVEFDHP 210 (587)
Q Consensus 167 Lp~~~te~~l~~~F~~---~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 210 (587)
-|..+|-.+++++|++ |-.|.+-.+.+|- ..-+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 4778999999999986 4345444444443 112234788888654
No 261
>KOG4008|consensus
Probab=20.77 E-value=73 Score=30.50 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEe
Q psy1534 513 NIERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEI 548 (587)
Q Consensus 513 ~~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~ 548 (587)
.....++|+-|+|..+|++-|+.+..+.|.+..+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 344579999999999999999999999997655443
No 262
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.52 E-value=2.5e+02 Score=21.31 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC----HHHHHHHHHH
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS----EWTAKRAIDM 571 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~----~~~a~~Ai~~ 571 (587)
.++.|.++.-.-=...++.-......|..+++....+.+.|.|++ .++...||+.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH
Confidence 477888888877788899999999999999999888899999997 3444555554
Done!