Query psy1534
Match_columns 587
No_of_seqs 472 out of 3581
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 18:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-40 7.5E-45 334.6 28.2 161 27-239 36-198 (292)
2 3smz_A Protein raver-1, ribonu 100.0 6.1E-40 2.1E-44 330.0 30.6 152 31-237 21-174 (284)
3 4f02_A Polyadenylate-binding p 100.0 2.2E-33 7.6E-38 269.6 19.8 167 31-239 14-182 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 9.8E-33 3.3E-37 253.9 21.7 163 33-236 1-165 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.2E-32 7.7E-37 252.2 19.6 162 31-235 2-168 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 4.3E-32 1.5E-36 257.0 21.3 175 28-241 9-186 (196)
7 1fxl_A Paraneoplastic encephal 100.0 5.1E-32 1.7E-36 249.3 21.0 161 32-235 2-167 (167)
8 2qfj_A FBP-interacting repress 100.0 1.7E-32 5.8E-37 263.9 18.0 179 31-241 27-208 (216)
9 3nmr_A Cugbp ELAV-like family 100.0 8E-32 2.7E-36 250.1 19.0 164 31-236 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 3.6E-32 1.2E-36 250.6 12.5 162 31-238 2-166 (167)
11 3smz_A Protein raver-1, ribonu 100.0 8E-31 2.7E-35 263.4 22.2 197 3-239 66-265 (284)
12 3tyt_A Heterogeneous nuclear r 100.0 2.6E-30 9E-35 245.8 21.1 192 30-235 2-204 (205)
13 2g4b_A Splicing factor U2AF 65 100.0 5.6E-30 1.9E-34 237.1 18.6 156 31-235 3-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 2.8E-29 9.5E-34 238.0 21.4 181 31-240 3-196 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 1.4E-30 4.8E-35 242.0 11.7 165 28-238 9-174 (175)
16 3pgw_A U1-A; protein-RNA compl 100.0 6.9E-29 2.3E-33 249.0 22.8 202 29-236 6-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-29 5E-34 255.2 17.0 173 29-238 114-291 (292)
18 2adc_A Polypyrimidine tract-bi 100.0 6.9E-29 2.3E-33 241.0 19.8 193 29-238 31-228 (229)
19 4f02_A Polyadenylate-binding p 100.0 2.8E-28 9.5E-33 234.0 19.8 81 157-237 13-94 (213)
20 3sde_A Paraspeckle component 1 100.0 2E-28 6.7E-33 242.6 19.3 156 30-239 20-180 (261)
21 1qm9_A Polypyrimidine tract-bi 100.0 1E-28 3.6E-33 234.2 15.2 191 31-238 2-197 (198)
22 3md3_A Nuclear and cytoplasmic 100.0 3.8E-27 1.3E-31 216.4 20.9 78 160-237 1-78 (166)
23 1b7f_A Protein (SXL-lethal pro 99.9 1E-26 3.6E-31 214.1 21.2 80 158-237 2-82 (168)
24 1fxl_A Paraneoplastic encephal 99.9 3.3E-26 1.1E-30 210.4 22.5 79 159-237 2-81 (167)
25 3pgw_A U1-A; protein-RNA compl 99.9 2.5E-25 8.5E-30 223.0 30.2 83 155-239 5-91 (282)
26 2qfj_A FBP-interacting repress 99.9 3.6E-26 1.2E-30 219.6 19.8 79 159-237 28-107 (216)
27 1l3k_A Heterogeneous nuclear r 99.9 6.6E-26 2.3E-30 214.3 20.7 81 157-238 11-92 (196)
28 3tyt_A Heterogeneous nuclear r 99.9 1.2E-25 4.1E-30 213.6 21.1 78 158-239 3-81 (205)
29 3nmr_A Cugbp ELAV-like family 99.9 1.3E-25 4.4E-30 208.1 19.6 68 159-226 3-73 (175)
30 2adc_A Polypyrimidine tract-bi 99.9 6.1E-25 2.1E-29 213.1 23.4 80 156-239 31-111 (229)
31 1qm9_A Polypyrimidine tract-bi 99.9 1.2E-24 4.2E-29 206.1 20.3 77 159-239 3-80 (198)
32 2g4b_A Splicing factor U2AF 65 99.9 1E-24 3.6E-29 201.5 19.0 70 517-586 95-170 (172)
33 2cjk_A Nuclear polyadenylated 99.9 1.7E-25 5.7E-30 205.9 12.6 75 159-235 3-78 (167)
34 2yh0_A Splicing factor U2AF 65 99.9 4.9E-24 1.7E-28 201.7 21.2 71 516-586 114-190 (198)
35 1fje_B Nucleolin RBD12, protei 99.9 2.2E-25 7.5E-30 206.8 11.2 82 156-238 10-91 (175)
36 3sde_A Paraspeckle component 1 99.9 2.6E-23 8.7E-28 205.8 17.8 75 156-235 19-93 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 2.3E-22 7.7E-27 183.3 15.0 150 60-240 2-152 (158)
38 4f25_A Polyadenylate-binding p 99.9 6.4E-22 2.2E-26 169.9 9.8 80 30-110 3-83 (115)
39 2i2y_A Fusion protein consists 99.8 7.8E-21 2.7E-25 171.4 11.8 139 69-239 10-149 (150)
40 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-19 3.8E-24 151.3 11.3 79 30-108 17-97 (99)
41 4fxv_A ELAV-like protein 1; RN 99.8 4.6E-19 1.6E-23 147.5 12.3 80 158-237 18-98 (99)
42 3s8s_A Histone-lysine N-methyl 99.8 3.4E-19 1.2E-23 151.2 11.4 82 29-110 3-86 (110)
43 2lkz_A RNA-binding protein 5; 99.8 8.7E-19 3E-23 144.2 7.6 79 30-108 7-93 (95)
44 3s8s_A Histone-lysine N-methyl 99.8 6E-18 2.1E-22 143.5 12.3 83 157-239 4-87 (110)
45 4f25_A Polyadenylate-binding p 99.8 4.2E-18 1.4E-22 146.0 11.4 81 159-240 5-85 (115)
46 2lxi_A RNA-binding protein 10; 99.8 6E-19 2.1E-23 144.4 5.7 79 33-111 2-84 (91)
47 2dnz_A Probable RNA-binding pr 99.8 5E-18 1.7E-22 140.3 11.3 83 29-111 2-86 (95)
48 2cq0_A Eukaryotic translation 99.7 1E-17 3.4E-22 140.7 12.4 84 28-111 11-96 (103)
49 2lxi_A RNA-binding protein 10; 99.7 1.9E-18 6.6E-23 141.4 7.8 82 159-240 1-85 (91)
50 2do4_A Squamous cell carcinoma 99.7 1E-17 3.4E-22 139.9 12.3 84 27-110 12-96 (100)
51 2dnh_A Bruno-like 5, RNA bindi 99.7 9.1E-18 3.1E-22 141.5 12.0 85 27-111 10-98 (105)
52 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-17 4E-22 143.3 12.7 86 26-111 19-106 (115)
53 1whw_A Hypothetical protein ri 99.7 8E-18 2.7E-22 140.2 11.2 83 29-111 5-89 (99)
54 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.5E-18 2.2E-22 137.1 10.3 81 30-110 4-86 (87)
55 2d9p_A Polyadenylate-binding p 99.7 1.4E-17 4.6E-22 139.9 12.5 84 27-111 10-94 (103)
56 1x5u_A Splicing factor 3B subu 99.7 6.5E-18 2.2E-22 142.4 10.5 86 26-111 9-96 (105)
57 2lea_A Serine/arginine-rich sp 99.7 1.2E-18 4.1E-23 153.8 6.1 125 73-241 5-130 (135)
58 2e5h_A Zinc finger CCHC-type a 99.7 9.8E-18 3.3E-22 138.2 11.2 82 27-108 11-94 (94)
59 2dgs_A DAZ-associated protein 99.7 1.1E-17 3.7E-22 139.4 11.3 83 28-111 6-90 (99)
60 1x5t_A Splicing factor 3B subu 99.7 5.8E-18 2E-22 140.2 9.5 82 30-111 3-87 (96)
61 3md1_A Nuclear and cytoplasmic 99.7 1.3E-17 4.5E-22 134.0 11.3 78 33-110 2-81 (83)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.4E-18 2.2E-22 136.5 9.3 80 29-108 4-85 (85)
63 2cqc_A Arginine/serine-rich sp 99.7 1.3E-17 4.6E-22 137.7 11.2 82 27-108 10-93 (95)
64 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.4E-18 3.2E-22 140.6 10.3 84 28-111 8-93 (102)
65 2dnm_A SRP46 splicing factor; 99.7 7E-18 2.4E-22 141.7 9.5 85 27-111 8-94 (103)
66 2fy1_A RNA-binding motif prote 99.7 1.1E-17 3.8E-22 143.5 10.8 82 30-111 5-87 (116)
67 2ywk_A Putative RNA-binding pr 99.7 9.6E-18 3.3E-22 138.6 10.0 81 28-108 12-93 (95)
68 1x5s_A Cold-inducible RNA-bind 99.7 6.6E-18 2.2E-22 141.6 8.9 86 27-112 7-94 (102)
69 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.7E-17 5.8E-22 151.9 12.3 141 77-240 11-154 (165)
70 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.6E-17 8.8E-22 133.6 11.6 81 158-238 5-86 (87)
71 1x4h_A RNA-binding protein 28; 99.7 2.6E-17 8.9E-22 140.2 12.0 85 27-111 10-102 (111)
72 3md1_A Nuclear and cytoplasmic 99.7 3.5E-17 1.2E-21 131.5 12.1 80 160-239 2-82 (83)
73 3ulh_A THO complex subunit 4; 99.7 1.9E-17 6.4E-22 140.1 10.9 84 25-108 22-106 (107)
74 2dgo_A Cytotoxic granule-assoc 99.7 4E-17 1.4E-21 140.0 13.0 85 27-111 10-96 (115)
75 2dng_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 137.5 12.1 83 27-111 10-94 (103)
76 2la6_A RNA-binding protein FUS 99.7 1.8E-17 6.3E-22 138.0 10.3 82 27-108 8-99 (99)
77 3lqv_A PRE-mRNA branch site pr 99.7 7E-18 2.4E-22 144.7 7.9 104 29-185 5-109 (115)
78 2cpf_A RNA binding motif prote 99.7 2.6E-17 8.9E-22 136.8 11.0 82 30-111 3-89 (98)
79 2do4_A Squamous cell carcinoma 99.7 4.3E-17 1.5E-21 136.0 12.3 83 157-239 15-97 (100)
80 2lkz_A RNA-binding protein 5; 99.7 1E-17 3.5E-22 137.8 8.3 80 158-237 8-94 (95)
81 2x1f_A MRNA 3'-END-processing 99.7 1.9E-17 6.5E-22 137.1 10.0 80 32-111 2-83 (96)
82 1p27_B RNA-binding protein 8A; 99.7 1.7E-17 5.9E-22 140.0 9.9 81 30-110 21-103 (106)
83 2jrs_A RNA-binding protein 39; 99.7 1.7E-17 5.8E-22 140.4 9.8 86 25-110 19-106 (108)
84 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-17 6.4E-22 140.8 10.1 85 27-111 21-107 (110)
85 1wi8_A EIF-4B, eukaryotic tran 99.7 2.6E-17 9E-22 138.4 10.8 83 27-111 10-95 (104)
86 2cph_A RNA binding motif prote 99.7 2.9E-17 9.9E-22 138.9 11.1 85 27-111 10-98 (107)
87 1whw_A Hypothetical protein ri 99.7 5.1E-17 1.7E-21 135.3 12.4 85 157-241 6-91 (99)
88 2cq3_A RNA-binding protein 9; 99.7 6.6E-17 2.3E-21 135.7 13.2 84 27-111 10-94 (103)
89 2dhg_A TRNA selenocysteine ass 99.7 2.2E-17 7.5E-22 138.9 10.2 84 28-111 5-91 (104)
90 3p5t_L Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 139.7 5.1 78 33-110 2-83 (90)
91 2dnz_A Probable RNA-binding pr 99.7 4.7E-17 1.6E-21 134.4 12.0 84 157-240 3-87 (95)
92 1s79_A Lupus LA protein; RRM, 99.7 9E-18 3.1E-22 140.5 7.7 79 29-108 8-87 (103)
93 2do0_A HnRNP M, heterogeneous 99.7 8.7E-17 3E-21 137.6 14.0 82 29-110 12-94 (114)
94 2cpz_A CUG triplet repeat RNA- 99.7 4.8E-17 1.6E-21 139.5 12.3 86 156-241 22-108 (115)
95 1u6f_A Tcubp1, RNA-binding pro 99.7 3.6E-17 1.2E-21 145.3 11.9 85 27-111 37-123 (139)
96 2cq0_A Eukaryotic translation 99.7 4.8E-17 1.6E-21 136.5 11.9 86 156-241 12-98 (103)
97 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.3E-17 1.8E-21 136.3 12.1 83 28-111 11-94 (103)
98 2dnh_A Bruno-like 5, RNA bindi 99.7 5.4E-17 1.8E-21 136.7 12.2 85 157-241 13-100 (105)
99 3s7r_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 132.2 11.1 79 28-107 7-87 (87)
100 1sjq_A Polypyrimidine tract-bi 99.7 1.4E-17 4.9E-22 138.3 8.1 79 29-112 13-94 (105)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.1E-17 1.4E-21 131.7 10.6 80 157-236 5-85 (85)
102 1x5t_A Splicing factor 3B subu 99.7 3.9E-17 1.3E-21 135.1 10.8 84 158-241 4-89 (96)
103 2dgs_A DAZ-associated protein 99.7 6.3E-17 2.1E-21 134.7 12.0 85 156-241 7-92 (99)
104 2ywk_A Putative RNA-binding pr 99.7 5.4E-17 1.8E-21 134.0 11.4 81 157-237 14-94 (95)
105 1wez_A HnRNP H', FTP-3, hetero 99.7 3E-17 1E-21 137.3 9.8 82 28-111 11-93 (102)
106 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.7E-17 1.3E-21 136.9 10.4 85 157-241 10-95 (102)
107 2do0_A HnRNP M, heterogeneous 99.7 1.2E-16 4E-21 136.8 13.8 85 156-240 12-96 (114)
108 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-17 6.1E-22 139.9 8.4 84 28-111 9-97 (106)
109 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-16 4.5E-21 136.7 14.0 86 156-241 12-98 (115)
110 2x1f_A MRNA 3'-END-processing 99.7 6.4E-17 2.2E-21 133.9 11.6 81 159-239 2-83 (96)
111 2dh8_A DAZ-associated protein 99.7 3.1E-17 1.1E-21 138.2 9.7 84 27-111 11-96 (105)
112 2cqc_A Arginine/serine-rich sp 99.7 7.8E-17 2.7E-21 133.0 11.9 82 156-237 12-94 (95)
113 2cqd_A RNA-binding region cont 99.7 6.3E-17 2.2E-21 139.0 11.7 83 27-110 12-96 (116)
114 2dgw_A Probable RNA-binding pr 99.7 6.2E-17 2.1E-21 132.5 11.1 81 28-110 6-87 (91)
115 2d9p_A Polyadenylate-binding p 99.7 6.1E-17 2.1E-21 135.9 11.2 85 156-241 12-96 (103)
116 2khc_A Testis-specific RNP-typ 99.7 2.6E-17 8.8E-22 141.9 9.0 82 27-108 35-118 (118)
117 3ns6_A Eukaryotic translation 99.7 5.8E-18 2E-22 141.2 4.8 79 32-110 6-93 (100)
118 2cq3_A RNA-binding protein 9; 99.7 1.7E-16 5.7E-21 133.2 13.8 85 156-241 12-96 (103)
119 2cpf_A RNA binding motif prote 99.7 7.8E-17 2.7E-21 133.9 11.6 84 158-241 4-91 (98)
120 2fy1_A RNA-binding motif prote 99.7 7.9E-17 2.7E-21 138.2 11.9 85 157-241 5-89 (116)
121 2cpe_A RNA-binding protein EWS 99.7 4.4E-17 1.5E-21 139.3 10.3 84 28-111 11-104 (113)
122 2dnm_A SRP46 splicing factor; 99.7 4.5E-17 1.5E-21 136.7 10.2 86 156-241 10-96 (103)
123 2ek1_A RNA-binding protein 12; 99.7 1.4E-17 4.7E-22 137.6 6.9 80 29-108 12-93 (95)
124 1x5s_A Cold-inducible RNA-bind 99.7 6.2E-17 2.1E-21 135.6 11.0 85 157-241 10-95 (102)
125 2cqp_A RNA-binding protein 12; 99.7 2.1E-17 7.2E-22 137.4 8.0 83 28-110 11-95 (98)
126 2dgv_A HnRNP M, heterogeneous 99.7 4.3E-17 1.5E-21 133.7 9.8 83 28-111 4-87 (92)
127 2kxn_B Transformer-2 protein h 99.7 2.2E-17 7.6E-22 144.3 8.4 84 27-110 41-126 (129)
128 1sjq_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 135.0 10.1 80 156-240 13-94 (105)
129 2e5h_A Zinc finger CCHC-type a 99.7 6.5E-17 2.2E-21 133.3 10.7 81 156-236 13-94 (94)
130 3ex7_B RNA-binding protein 8A; 99.7 2.8E-17 9.6E-22 143.4 8.8 84 28-111 18-103 (126)
131 2hvz_A Splicing factor, argini 99.7 1.4E-17 4.7E-22 139.3 6.5 75 33-111 1-76 (101)
132 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-16 6.9E-21 132.7 13.7 84 156-240 12-95 (103)
133 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.2E-17 2.8E-21 145.9 12.1 86 27-112 34-121 (156)
134 3n9u_C Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 147.3 10.1 80 31-110 54-137 (156)
135 1x4d_A Matrin 3; structural ge 99.7 3.3E-17 1.1E-21 136.1 8.6 78 29-111 12-93 (102)
136 1x4h_A RNA-binding protein 28; 99.7 1.2E-16 4.1E-21 136.0 12.4 86 156-241 12-104 (111)
137 3r27_A HnRNP L, heterogeneous 99.7 4.1E-17 1.4E-21 134.1 9.0 78 29-111 18-98 (100)
138 3ucg_A Polyadenylate-binding p 99.7 6.2E-17 2.1E-21 131.9 10.1 79 31-110 5-85 (89)
139 3p5t_L Cleavage and polyadenyl 99.7 1.5E-17 5.2E-22 135.9 6.4 81 160-240 2-85 (90)
140 1x5u_A Splicing factor 3B subu 99.7 9.1E-17 3.1E-21 135.3 11.4 85 156-240 12-97 (105)
141 2div_A TRNA selenocysteine ass 99.7 3.8E-17 1.3E-21 136.0 8.8 82 29-110 6-94 (99)
142 1wg5_A Heterogeneous nuclear r 99.7 5.4E-17 1.8E-21 136.4 9.4 82 29-111 12-95 (104)
143 1x4e_A RNA binding motif, sing 99.7 1.3E-17 4.3E-22 134.8 5.3 80 29-108 2-83 (85)
144 3ulh_A THO complex subunit 4; 99.7 1.8E-16 6E-21 134.0 12.6 82 155-236 25-106 (107)
145 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-16 5.3E-21 131.5 11.9 81 158-240 8-92 (96)
146 2dhg_A TRNA selenocysteine ass 99.7 9.7E-17 3.3E-21 134.9 10.9 86 156-241 6-93 (104)
147 2mss_A Protein (musashi1); RNA 99.7 1.5E-17 5.2E-22 130.9 5.5 73 34-107 1-75 (75)
148 2db1_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 140.3 8.6 82 29-111 14-99 (118)
149 2cph_A RNA binding motif prote 99.7 1.3E-16 4.5E-21 134.8 11.4 86 156-241 12-100 (107)
150 2dgp_A Bruno-like 4, RNA bindi 99.7 1E-16 3.5E-21 135.2 10.7 86 156-241 10-99 (106)
151 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.4E-21 126.3 10.4 74 158-236 6-79 (89)
152 2cqd_A RNA-binding region cont 99.7 2.9E-16 9.9E-21 134.8 13.6 84 156-240 14-98 (116)
153 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.4E-21 134.6 11.2 83 157-239 21-104 (106)
154 1x4a_A Splicing factor, argini 99.7 1.4E-16 4.7E-21 135.2 11.4 83 27-111 17-100 (109)
155 4a8x_A RNA-binding protein wit 99.7 4.8E-17 1.6E-21 132.3 8.1 80 31-110 3-85 (88)
156 3r27_A HnRNP L, heterogeneous 99.7 1.2E-16 4.1E-21 131.4 10.5 80 155-239 17-98 (100)
157 2la6_A RNA-binding protein FUS 99.7 1.3E-16 4.4E-21 132.9 10.9 82 155-236 9-99 (99)
158 2cq1_A PTB-like protein L; RRM 99.7 2.3E-16 7.8E-21 131.1 12.3 80 28-112 11-93 (101)
159 2dng_A Eukaryotic translation 99.7 2.2E-16 7.5E-21 132.5 12.3 83 156-240 12-95 (103)
160 2jrs_A RNA-binding protein 39; 99.7 9.8E-17 3.4E-21 135.7 10.1 85 155-239 22-107 (108)
161 2cqg_A TDP-43, TAR DNA-binding 99.7 2.9E-16 9.8E-21 131.7 12.9 83 27-111 10-94 (103)
162 2hgl_A HNRPF protein, heteroge 99.7 3.6E-17 1.2E-21 143.6 7.7 81 29-110 41-125 (136)
163 2rs2_A Musashi-1, RNA-binding 99.7 9.7E-17 3.3E-21 136.0 10.1 84 27-111 20-105 (109)
164 2cpy_A RNA-binding protein 12; 99.7 4E-17 1.4E-21 139.6 7.8 82 29-111 12-95 (114)
165 2dgw_A Probable RNA-binding pr 99.7 2.6E-16 9E-21 128.7 12.3 82 156-239 7-88 (91)
166 2kt5_A RNA and export factor-b 99.7 1.2E-16 4E-21 139.0 10.8 84 28-111 31-115 (124)
167 2err_A Ataxin-2-binding protei 99.7 6.4E-17 2.2E-21 137.2 8.8 83 27-110 24-107 (109)
168 2div_A TRNA selenocysteine ass 99.7 1.3E-16 4.4E-21 132.8 10.5 84 156-239 6-95 (99)
169 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-16 5.2E-21 133.7 11.0 83 157-241 13-97 (104)
170 1p1t_A Cleavage stimulation fa 99.7 2.2E-17 7.5E-22 138.9 5.6 81 31-111 7-89 (104)
171 4a8x_A RNA-binding protein wit 99.7 1.7E-16 5.7E-21 129.0 10.7 81 159-239 4-86 (88)
172 2dgv_A HnRNP M, heterogeneous 99.7 2E-16 6.8E-21 129.7 11.1 83 157-240 6-88 (92)
173 2fc9_A NCL protein; structure 99.7 1.8E-16 6.2E-21 132.4 11.0 81 28-111 11-92 (101)
174 1u6f_A Tcubp1, RNA-binding pro 99.7 3.6E-16 1.2E-20 138.8 13.5 87 155-241 38-125 (139)
175 1oo0_B CG8781-PA, drosophila Y 99.7 2E-16 7E-21 134.4 11.4 84 156-239 23-107 (110)
176 1s79_A Lupus LA protein; RRM, 99.7 6.2E-17 2.1E-21 135.4 8.0 79 158-237 10-88 (103)
177 1x4b_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 138.6 8.5 81 30-111 25-107 (116)
178 3ns6_A Eukaryotic translation 99.7 4.2E-17 1.4E-21 136.0 6.8 81 159-239 6-94 (100)
179 2cpi_A CCR4-NOT transcription 99.7 2.3E-16 7.9E-21 134.2 11.5 82 30-111 13-102 (111)
180 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-16 5.2E-21 131.6 9.9 79 30-110 7-90 (96)
181 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.6E-21 133.1 8.8 79 156-239 12-93 (102)
182 2kt5_A RNA and export factor-b 99.7 4.1E-16 1.4E-20 135.5 13.0 86 156-241 32-117 (124)
183 3ucg_A Polyadenylate-binding p 99.7 3.3E-16 1.1E-20 127.5 11.6 79 159-238 6-85 (89)
184 2cpe_A RNA-binding protein EWS 99.7 2.4E-16 8.3E-21 134.6 11.2 85 156-240 12-105 (113)
185 2khc_A Testis-specific RNP-typ 99.7 1.5E-16 5E-21 137.1 9.9 82 155-236 36-118 (118)
186 1x4c_A Splicing factor, argini 99.7 3.7E-16 1.3E-20 132.3 12.1 70 516-586 15-89 (108)
187 1x5o_A RNA binding motif, sing 99.7 2.6E-16 8.9E-21 134.6 11.2 81 29-109 22-111 (114)
188 2dh8_A DAZ-associated protein 99.7 2.1E-16 7.3E-21 133.0 10.5 84 156-240 13-97 (105)
189 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.8E-17 1.3E-21 129.3 5.5 74 33-107 1-76 (77)
190 2cq4_A RNA binding motif prote 99.7 1.3E-16 4.4E-21 136.5 9.1 78 32-110 25-104 (114)
191 2dnn_A RNA-binding protein 12; 99.7 1.7E-16 5.7E-21 133.9 9.6 77 32-110 16-93 (109)
192 3s7r_A Heterogeneous nuclear r 99.7 4.5E-16 1.6E-20 126.2 11.8 79 156-235 8-87 (87)
193 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-16 4E-21 136.3 8.3 80 28-112 27-109 (119)
194 2kxn_B Transformer-2 protein h 99.7 1.4E-16 4.7E-21 139.3 9.0 85 155-239 42-127 (129)
195 2i2y_A Fusion protein consists 99.7 3.4E-16 1.1E-20 140.9 11.8 71 516-586 73-144 (150)
196 1x4a_A Splicing factor, argini 99.7 5.8E-16 2E-20 131.3 12.6 83 156-240 19-101 (109)
197 1wex_A Hypothetical protein (r 99.7 2E-16 6.9E-21 132.3 9.6 79 29-112 12-93 (104)
198 2err_A Ataxin-2-binding protei 99.7 2.6E-16 8.9E-21 133.4 10.3 83 155-238 25-107 (109)
199 2cq1_A PTB-like protein L; RRM 99.7 5.1E-16 1.7E-20 129.0 11.8 81 155-240 11-93 (101)
200 2cqg_A TDP-43, TAR DNA-binding 99.7 8.8E-16 3E-20 128.8 13.4 84 156-241 12-96 (103)
201 2wbr_A GW182, gawky, LD47780P; 99.7 3.8E-16 1.3E-20 123.6 10.3 71 516-586 7-77 (89)
202 3pgw_S U1-70K; protein-RNA com 99.7 8.3E-17 2.8E-21 169.6 8.6 84 157-240 100-184 (437)
203 2nlw_A Eukaryotic translation 99.7 1.2E-16 4.3E-21 134.4 8.0 78 31-109 14-99 (105)
204 2rs2_A Musashi-1, RNA-binding 99.7 3.3E-16 1.1E-20 132.7 10.6 85 155-240 21-106 (109)
205 2m2b_A RNA-binding protein 10; 99.7 4.7E-17 1.6E-21 142.9 5.5 82 28-110 19-108 (131)
206 2cqp_A RNA-binding protein 12; 99.7 1.9E-16 6.5E-21 131.5 8.9 82 157-238 13-95 (98)
207 1x4c_A Splicing factor, argini 99.7 9.5E-16 3.2E-20 129.7 13.4 78 158-241 14-96 (108)
208 3n9u_C Cleavage and polyadenyl 99.7 3.2E-16 1.1E-20 141.5 11.1 81 158-238 54-137 (156)
209 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.1E-17 2.4E-21 134.7 6.1 80 29-110 16-98 (100)
210 2dnq_A RNA-binding protein 4B; 99.7 3.2E-16 1.1E-20 128.0 9.9 77 28-111 4-81 (90)
211 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-16 3.7E-21 135.4 7.2 81 27-110 23-105 (111)
212 1wel_A RNA-binding protein 12; 99.7 5.8E-17 2E-21 140.9 5.5 83 27-110 20-104 (124)
213 2ad9_A Polypyrimidine tract-bi 99.7 3.5E-16 1.2E-20 133.3 10.2 81 155-240 27-109 (119)
214 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.4E-16 3.2E-20 139.0 13.6 85 156-240 36-121 (156)
215 1wez_A HnRNP H', FTP-3, hetero 99.7 2.6E-16 8.8E-21 131.6 9.0 81 157-239 13-93 (102)
216 2ek1_A RNA-binding protein 12; 99.7 1.5E-16 5.1E-21 131.4 7.4 80 158-237 14-94 (95)
217 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.9E-16 9.9E-21 139.6 9.8 80 28-107 59-140 (140)
218 2ki2_A SS-DNA binding protein 99.7 4.1E-17 1.4E-21 133.3 3.9 77 33-110 2-80 (90)
219 2fc8_A NCL protein; structure 99.7 9.5E-16 3.2E-20 128.3 12.4 81 28-111 11-93 (102)
220 3ex7_B RNA-binding protein 8A; 99.6 3.9E-16 1.3E-20 136.1 10.3 86 156-241 19-105 (126)
221 2fc9_A NCL protein; structure 99.6 6E-16 2.1E-20 129.3 11.0 81 157-240 13-93 (101)
222 2dha_A FLJ20171 protein; RRM d 99.6 8.4E-17 2.9E-21 138.7 5.8 80 30-110 21-105 (123)
223 2dis_A Unnamed protein product 99.6 6.5E-16 2.2E-20 131.0 11.3 85 157-241 6-95 (109)
224 1x4f_A Matrin 3; structural ge 99.6 3E-16 1E-20 132.2 8.8 78 29-111 22-103 (112)
225 2jwn_A Embryonic polyadenylate 99.6 4.2E-16 1.5E-20 135.4 10.0 79 31-110 35-115 (124)
226 2lmi_A GRSF-1, G-rich sequence 99.6 5.4E-17 1.8E-21 137.2 4.1 83 27-110 6-92 (107)
227 2krb_A Eukaryotic translation 99.6 7.3E-17 2.5E-21 129.0 4.6 71 33-104 2-80 (81)
228 2cpi_A CCR4-NOT transcription 99.6 3.9E-16 1.3E-20 132.8 9.5 83 157-239 13-102 (111)
229 2db1_A Heterogeneous nuclear r 99.6 3.6E-16 1.2E-20 134.5 9.3 81 157-238 15-98 (118)
230 2hgl_A HNRPF protein, heteroge 99.6 2.1E-16 7E-21 138.8 7.9 81 157-238 42-125 (136)
231 1p1t_A Cleavage stimulation fa 99.6 3.5E-16 1.2E-20 131.5 8.8 81 159-239 8-89 (104)
232 2cpj_A Non-POU domain-containi 99.6 5.8E-16 2E-20 128.8 10.0 80 27-111 10-90 (99)
233 2lcw_A RNA-binding protein FUS 99.4 1.3E-17 4.6E-22 143.2 0.0 84 29-112 4-97 (116)
234 1wex_A Hypothetical protein (r 99.6 5.7E-16 1.9E-20 129.6 9.9 80 156-240 12-93 (104)
235 2ytc_A PRE-mRNA-splicing facto 99.6 5.2E-16 1.8E-20 125.2 9.3 77 27-108 7-85 (85)
236 2kn4_A Immunoglobulin G-bindin 99.6 4.5E-16 1.5E-20 141.4 10.0 82 29-110 67-150 (158)
237 2dis_A Unnamed protein product 99.6 2.2E-16 7.4E-21 133.9 7.4 82 30-111 6-93 (109)
238 2mss_A Protein (musashi1); RNA 99.6 2E-16 6.7E-21 124.4 6.5 74 161-235 1-75 (75)
239 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.6E-16 2.3E-20 141.3 11.0 81 31-111 71-153 (165)
240 2a3j_A U1 small nuclear ribonu 99.6 6.1E-16 2.1E-20 134.2 10.2 83 155-239 25-111 (127)
241 2jvr_A Nucleolar protein 3; RN 99.6 5.3E-16 1.8E-20 131.1 9.5 80 156-238 25-105 (111)
242 2lea_A Serine/arginine-rich sp 99.6 9.9E-17 3.4E-21 141.4 5.2 85 27-111 42-128 (135)
243 1x4e_A RNA binding motif, sing 99.6 9E-17 3.1E-21 129.7 4.5 79 157-235 3-82 (85)
244 1x5o_A RNA binding motif, sing 99.6 8.1E-16 2.8E-20 131.5 10.6 82 157-238 23-112 (114)
245 2a3j_A U1 small nuclear ribonu 99.6 3.2E-16 1.1E-20 136.0 8.1 80 29-110 26-110 (127)
246 2nlw_A Eukaryotic translation 99.6 7.2E-16 2.5E-20 129.7 10.0 82 157-239 13-101 (105)
247 2dnn_A RNA-binding protein 12; 99.6 6.8E-16 2.3E-20 130.2 9.8 78 159-238 16-93 (109)
248 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.5E-16 5E-21 132.8 5.6 83 155-239 15-99 (100)
249 1wg5_A Heterogeneous nuclear r 99.6 6E-16 2.1E-20 130.0 9.4 82 157-239 13-95 (104)
250 1x4b_A Heterogeneous nuclear r 99.6 9E-16 3.1E-20 131.7 10.7 82 159-241 27-109 (116)
251 2dnq_A RNA-binding protein 4B; 99.6 1.3E-15 4.4E-20 124.3 11.1 79 156-241 5-83 (90)
252 2cpy_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 134.1 7.5 82 157-239 13-95 (114)
253 1iqt_A AUF1, heterogeneous nuc 99.6 8E-17 2.7E-21 126.7 3.5 73 34-107 1-75 (75)
254 1x4g_A Nucleolysin TIAR; struc 99.6 1.6E-15 5.4E-20 128.6 11.8 82 155-241 21-102 (109)
255 2xs2_A Deleted in azoospermia- 99.6 2.6E-16 8.9E-21 131.7 6.6 80 30-111 7-87 (102)
256 2ki2_A SS-DNA binding protein 99.6 1.5E-16 5E-21 130.0 5.0 80 160-240 2-82 (90)
257 2cq4_A RNA binding motif prote 99.6 5.2E-16 1.8E-20 132.7 8.6 80 159-239 25-105 (114)
258 2dgt_A RNA-binding protein 30; 99.6 1.6E-15 5.4E-20 124.4 11.1 77 28-111 6-83 (92)
259 2j8a_A Histone-lysine N-methyl 99.6 4.5E-16 1.5E-20 131.4 7.9 76 33-108 3-94 (136)
260 2m2b_A RNA-binding protein 10; 99.6 2.3E-16 7.7E-21 138.5 6.4 84 156-240 20-110 (131)
261 2hgm_A HNRPF protein, heteroge 99.6 2.2E-16 7.4E-21 136.5 6.0 81 29-111 39-122 (126)
262 2dgt_A RNA-binding protein 30; 99.6 3.2E-15 1.1E-19 122.5 12.8 78 156-240 7-84 (92)
263 2jwn_A Embryonic polyadenylate 99.6 1.7E-15 6E-20 131.5 11.9 80 159-239 36-116 (124)
264 1why_A Hypothetical protein ri 99.6 1.2E-15 4.1E-20 126.4 10.3 79 156-239 14-94 (97)
265 1why_A Hypothetical protein ri 99.6 2.5E-15 8.7E-20 124.4 12.2 71 516-586 17-89 (97)
266 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.6E-16 8.9E-21 124.4 5.9 75 160-235 1-76 (77)
267 3q2s_C Cleavage and polyadenyl 99.6 3.7E-16 1.3E-20 150.5 8.2 79 31-109 67-149 (229)
268 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 4.1E-20 129.3 10.2 79 28-111 21-100 (109)
269 2hvz_A Splicing factor, argini 99.6 8.2E-16 2.8E-20 128.4 9.1 78 160-241 1-78 (101)
270 2dgu_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 124.9 13.1 79 157-242 9-87 (103)
271 2hgn_A Heterogeneous nuclear r 99.6 9.8E-17 3.4E-21 141.3 3.5 81 29-111 43-124 (139)
272 2dnp_A RNA-binding protein 14; 99.6 1.6E-15 5.5E-20 123.7 10.3 77 28-111 5-82 (90)
273 2dgu_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 126.5 11.1 76 29-111 8-84 (103)
274 2cpx_A Hypothetical protein FL 99.6 2.1E-16 7E-21 135.5 5.0 83 29-111 22-106 (115)
275 2xnq_A Nuclear polyadenylated 99.6 3.3E-15 1.1E-19 123.6 11.6 78 155-239 18-96 (97)
276 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.8E-20 127.0 9.5 80 154-238 22-101 (101)
277 2krb_A Eukaryotic translation 99.6 4.4E-16 1.5E-20 124.4 6.0 72 160-232 2-80 (81)
278 2dnp_A RNA-binding protein 14; 99.6 3.8E-15 1.3E-19 121.5 11.6 78 156-240 6-83 (90)
279 2la4_A Nuclear and cytoplasmic 99.6 7.3E-16 2.5E-20 128.7 7.5 76 29-109 24-100 (101)
280 2cpj_A Non-POU domain-containi 99.6 2.9E-15 1E-19 124.6 10.9 73 514-586 13-85 (99)
281 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.2E-15 7.6E-20 133.8 10.8 80 156-235 60-140 (140)
282 2f3j_A RNA and export factor b 99.6 9.7E-16 3.3E-20 141.5 8.6 82 29-110 85-167 (177)
283 1x4f_A Matrin 3; structural ge 99.6 2E-15 7E-20 127.1 9.8 74 513-586 22-98 (112)
284 2cpd_A Apobec-1 stimulating pr 99.6 4.6E-15 1.6E-19 123.4 11.9 78 27-111 10-90 (99)
285 2e5j_A Methenyltetrahydrofolat 99.6 1.8E-15 6.2E-20 125.3 9.4 80 156-239 16-95 (97)
286 1wf1_A RNA-binding protein RAL 99.6 1.8E-15 6.3E-20 128.4 9.7 75 30-111 25-101 (110)
287 2jvo_A Nucleolar protein 3; nu 99.6 1.6E-15 5.4E-20 128.2 9.1 78 26-110 25-103 (108)
288 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4.1E-21 133.5 2.2 81 29-111 14-96 (101)
289 2jvo_A Nucleolar protein 3; nu 99.6 2.3E-15 7.9E-20 127.2 10.2 79 155-240 27-105 (108)
290 1nu4_A U1A RNA binding domain; 99.6 1.1E-15 3.6E-20 126.7 7.7 82 156-239 5-90 (97)
291 2fc8_A NCL protein; structure 99.6 3.8E-15 1.3E-19 124.6 11.1 82 156-240 12-94 (102)
292 2e5j_A Methenyltetrahydrofolat 99.6 9.5E-16 3.2E-20 127.0 7.2 79 28-110 15-94 (97)
293 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-15 3.9E-20 126.3 7.7 79 28-110 12-91 (96)
294 2ytc_A PRE-mRNA-splicing facto 99.6 3.6E-15 1.2E-19 120.2 10.5 73 514-586 10-83 (85)
295 2xnq_A Nuclear polyadenylated 99.6 3.2E-15 1.1E-19 123.8 10.4 77 27-110 17-95 (97)
296 2dha_A FLJ20171 protein; RRM d 99.6 8.1E-16 2.8E-20 132.6 6.9 79 159-238 23-105 (123)
297 2cpd_A Apobec-1 stimulating pr 99.6 8.1E-15 2.8E-19 121.9 12.7 78 156-240 12-91 (99)
298 2xs2_A Deleted in azoospermia- 99.6 1.2E-15 4.2E-20 127.6 7.7 81 158-240 8-88 (102)
299 3beg_B Splicing factor, argini 99.6 2E-15 6.8E-20 129.2 9.1 69 516-585 16-89 (115)
300 2cqh_A IGF-II mRNA-binding pro 99.6 3.2E-15 1.1E-19 122.8 9.9 78 157-240 6-85 (93)
301 2lmi_A GRSF-1, G-rich sequence 99.6 4.3E-16 1.5E-20 131.6 4.6 82 156-238 8-92 (107)
302 2e5g_A U6 snRNA-specific termi 99.6 4.3E-15 1.5E-19 122.3 10.4 76 30-111 6-83 (94)
303 2cpx_A Hypothetical protein FL 99.6 2.8E-15 9.7E-20 128.3 9.6 83 156-241 22-108 (115)
304 2cqh_A IGF-II mRNA-binding pro 99.6 2.7E-15 9.3E-20 123.2 8.8 78 28-111 4-84 (93)
305 1wg1_A KIAA1579 protein, homol 99.6 3.3E-15 1.1E-19 121.3 9.0 74 31-110 4-78 (88)
306 1wf1_A RNA-binding protein RAL 99.6 7.7E-15 2.6E-19 124.5 11.6 77 156-239 24-101 (110)
307 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.2E-20 127.1 7.9 76 30-110 23-106 (114)
308 2kvi_A Nuclear polyadenylated 99.6 1.5E-15 5.3E-20 125.5 6.9 76 29-111 7-84 (96)
309 3q2s_C Cleavage and polyadenyl 99.6 2.4E-15 8.4E-20 144.7 9.3 81 158-238 67-150 (229)
310 1iqt_A AUF1, heterogeneous nuc 99.6 8.2E-16 2.8E-20 120.8 4.9 74 161-235 1-75 (75)
311 2cq2_A Hypothetical protein LO 99.6 4.6E-15 1.6E-19 125.0 9.7 80 155-239 21-107 (114)
312 1whx_A Hypothetical protein ri 99.6 3.7E-15 1.3E-19 126.6 9.2 72 515-586 9-80 (111)
313 2hgn_A Heterogeneous nuclear r 99.6 4.7E-16 1.6E-20 137.0 3.7 80 158-239 45-124 (139)
314 2kvi_A Nuclear polyadenylated 99.6 2.8E-15 9.4E-20 123.9 8.0 79 156-241 7-86 (96)
315 3lqv_A PRE-mRNA branch site pr 99.6 5.2E-15 1.8E-19 126.7 9.9 82 156-239 5-86 (115)
316 1whx_A Hypothetical protein ri 99.6 4.3E-15 1.5E-19 126.2 9.2 76 159-239 10-85 (111)
317 1nu4_A U1A RNA binding domain; 99.6 1.4E-15 4.9E-20 125.9 6.1 80 29-110 5-89 (97)
318 1fj7_A Nucleolin RBD1, protein 99.6 5.2E-16 1.8E-20 129.6 3.3 81 157-239 15-96 (101)
319 2hgm_A HNRPF protein, heteroge 99.6 1.4E-15 4.7E-20 131.4 5.9 80 157-238 40-121 (126)
320 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-15 1.1E-19 123.6 7.9 80 157-240 14-93 (96)
321 2e5g_A U6 snRNA-specific termi 99.6 1E-14 3.4E-19 120.0 10.8 78 158-241 7-85 (94)
322 3zzy_A Polypyrimidine tract-bi 99.6 6.9E-15 2.4E-19 126.9 10.1 77 31-111 27-107 (130)
323 1wel_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 132.1 5.8 81 157-238 23-104 (124)
324 2f3j_A RNA and export factor b 99.6 4.4E-15 1.5E-19 137.0 9.4 85 155-239 84-168 (177)
325 1sjr_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 132.5 9.1 76 32-110 46-124 (164)
326 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-14 3.9E-19 130.3 11.1 78 159-239 46-125 (164)
327 2lcw_A RNA-binding protein FUS 99.3 2.3E-16 8E-21 135.3 0.0 84 157-240 5-97 (116)
328 2j8a_A Histone-lysine N-methyl 99.6 8.2E-15 2.8E-19 123.8 9.1 79 160-238 3-96 (136)
329 1x5p_A Negative elongation fac 99.6 2.8E-14 9.5E-19 118.1 12.4 79 156-241 12-90 (97)
330 3zzy_A Polypyrimidine tract-bi 99.6 1.9E-14 6.5E-19 124.1 11.4 77 159-239 28-107 (130)
331 2pe8_A Splicing factor 45; RRM 99.6 1.6E-14 5.5E-19 120.9 10.7 82 30-111 6-95 (105)
332 1wg1_A KIAA1579 protein, homol 99.6 8.2E-15 2.8E-19 119.0 8.7 76 158-239 4-79 (88)
333 2e44_A Insulin-like growth fac 99.6 5.7E-15 1.9E-19 122.0 7.6 79 29-110 12-92 (96)
334 3egn_A RNA-binding protein 40; 99.6 6.8E-15 2.3E-19 131.2 8.6 85 156-240 42-132 (143)
335 2dnl_A Cytoplasmic polyadenyla 99.5 5.9E-15 2E-19 126.1 7.6 77 29-108 5-86 (114)
336 2e44_A Insulin-like growth fac 99.5 1.8E-14 6.3E-19 118.9 10.3 79 158-239 14-93 (96)
337 3d2w_A TAR DNA-binding protein 99.5 1.3E-14 4.4E-19 118.0 8.6 75 28-110 7-84 (89)
338 3d2w_A TAR DNA-binding protein 99.5 1.9E-14 6.7E-19 116.9 9.6 77 155-239 7-85 (89)
339 2e5i_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 121.8 11.6 72 34-110 27-102 (124)
340 2hzc_A Splicing factor U2AF 65 99.5 2E-14 6.8E-19 116.3 9.4 70 515-585 5-85 (87)
341 2diu_A KIAA0430 protein; struc 99.5 1.7E-14 5.9E-19 115.2 8.6 74 158-240 7-86 (96)
342 3beg_B Splicing factor, argini 99.5 1.2E-14 4.2E-19 124.3 8.3 76 158-239 15-95 (115)
343 3egn_A RNA-binding protein 40; 99.5 6.5E-15 2.2E-19 131.3 6.5 82 29-110 42-130 (143)
344 2voo_A Lupus LA protein; RNA-b 99.5 1E-13 3.5E-18 129.8 14.7 79 159-238 109-187 (193)
345 2diu_A KIAA0430 protein; struc 99.5 1.3E-14 4.3E-19 115.9 6.9 71 31-110 7-84 (96)
346 1wf0_A TDP-43, TAR DNA-binding 99.5 1E-14 3.6E-19 118.3 6.5 76 30-111 3-79 (88)
347 2pe8_A Splicing factor 45; RRM 99.5 7.3E-14 2.5E-18 116.9 11.5 81 157-237 6-93 (105)
348 3pgw_S U1-70K; protein-RNA com 99.5 2.9E-14 1E-18 150.2 11.2 81 31-111 101-183 (437)
349 2e5i_A Heterogeneous nuclear r 99.5 6.2E-14 2.1E-18 120.4 11.1 75 160-239 26-103 (124)
350 1x5p_A Negative elongation fac 99.5 9.5E-14 3.3E-18 114.8 11.6 70 515-586 14-83 (97)
351 2voo_A Lupus LA protein; RNA-b 99.5 4.2E-14 1.4E-18 132.4 10.4 75 33-108 110-185 (193)
352 2hzc_A Splicing factor U2AF 65 99.5 6E-14 2E-18 113.5 9.2 71 158-234 5-86 (87)
353 1wf0_A TDP-43, TAR DNA-binding 99.5 3.6E-14 1.2E-18 115.1 6.9 77 158-240 4-80 (88)
354 2dnl_A Cytoplasmic polyadenyla 99.5 1.2E-13 4.1E-18 117.9 9.6 76 158-236 7-86 (114)
355 2bz2_A Negative elongation fac 99.5 1.1E-13 3.8E-18 119.2 9.2 78 156-240 36-113 (121)
356 1jmt_A Splicing factor U2AF 35 99.5 2.7E-14 9.4E-19 119.4 4.5 72 36-107 19-103 (104)
357 2dit_A HIV TAT specific factor 99.4 4.5E-13 1.5E-17 113.9 11.5 84 24-110 7-102 (112)
358 3u1l_A PRE-mRNA-splicing facto 99.4 2.6E-13 9E-18 129.8 8.6 80 156-240 131-231 (240)
359 3v4m_A Splicing factor U2AF 65 99.4 3.1E-13 1.1E-17 113.1 8.0 82 30-111 3-98 (105)
360 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.9E-17 110.8 12.2 82 156-240 12-104 (112)
361 3u1l_A PRE-mRNA-splicing facto 99.4 1.8E-13 6.3E-18 130.9 7.0 77 29-110 131-229 (240)
362 2bz2_A Negative elongation fac 99.4 5.9E-13 2E-17 114.7 9.4 70 515-586 38-107 (121)
363 3v4m_A Splicing factor U2AF 65 99.4 6.3E-13 2.1E-17 111.3 9.3 82 157-238 3-97 (105)
364 3ue2_A Poly(U)-binding-splicin 99.4 6.4E-13 2.2E-17 113.4 8.2 81 31-111 19-110 (118)
365 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.6E-18 113.5 5.6 72 164-235 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.3 2.9E-12 1E-16 109.3 9.5 80 158-237 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.2E-16 101.4 10.3 75 31-111 9-91 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.3E-11 1.5E-15 98.7 11.4 75 160-240 11-92 (100)
369 3s6e_A RNA-binding protein 39; 99.2 4.3E-11 1.5E-15 101.3 10.0 80 156-238 4-93 (114)
370 3tht_A Alkylated DNA repair pr 99.2 2E-11 7E-16 123.1 8.4 77 27-108 13-97 (345)
371 1owx_A Lupus LA protein, SS-B, 99.2 7.2E-11 2.5E-15 99.9 9.8 73 515-587 17-93 (121)
372 3s6e_A RNA-binding protein 39; 99.2 5.4E-11 1.8E-15 100.7 8.6 77 31-110 6-93 (114)
373 3tht_A Alkylated DNA repair pr 99.2 5E-11 1.7E-15 120.3 9.7 77 155-236 14-97 (345)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 8.2E-11 2.8E-15 93.1 8.8 71 513-586 4-82 (91)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.8E-10 6.1E-15 91.5 6.9 72 512-586 11-91 (95)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 8.8E-10 3E-14 87.2 9.0 76 156-239 4-87 (91)
377 1owx_A Lupus LA protein, SS-B, 99.0 1.3E-09 4.3E-14 92.3 8.1 77 155-236 14-94 (121)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 6E-09 2.1E-13 82.8 7.7 74 155-236 11-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.7 1.2E-08 4.1E-13 97.6 7.1 67 45-111 142-214 (222)
380 3dxb_A Thioredoxin N-terminall 98.6 4.5E-08 1.5E-12 93.6 7.5 68 170-237 140-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 2E-07 6.8E-12 75.4 9.4 70 516-585 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 7E-06 2.4E-10 66.4 9.2 70 159-233 21-95 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 2.5E-05 8.5E-10 62.8 8.5 74 29-110 5-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.8 0.00018 6.2E-09 57.8 10.5 69 516-587 8-81 (104)
385 1wey_A Calcipressin 1; structu 97.7 9E-05 3.1E-09 59.9 6.7 70 517-586 6-80 (104)
386 1wey_A Calcipressin 1; structu 97.6 0.00022 7.4E-09 57.7 8.6 76 159-239 5-85 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.1 0.0009 3.1E-08 55.6 6.7 72 31-108 23-95 (119)
388 1uw4_A UPF3X; nonsense mediate 97.1 0.003 1E-07 50.1 9.0 67 160-226 2-71 (91)
389 1wwh_A Nucleoporin 35, nucleop 96.9 0.0033 1.1E-07 52.2 8.4 69 515-585 23-92 (119)
390 1whv_A Poly(A)-specific ribonu 96.8 0.0038 1.3E-07 49.5 7.5 55 159-221 16-70 (100)
391 3p3d_A Nucleoporin 53; structu 96.7 0.0015 5.3E-08 54.9 4.9 78 31-109 6-98 (132)
392 1uw4_A UPF3X; nonsense mediate 96.7 0.0054 1.9E-07 48.6 7.4 64 517-580 2-73 (91)
393 3p3d_A Nucleoporin 53; structu 96.6 0.0017 5.9E-08 54.6 4.1 70 516-587 7-96 (132)
394 1whv_A Poly(A)-specific ribonu 96.4 0.012 4.2E-07 46.6 7.9 54 518-573 17-70 (100)
395 3ctr_A Poly(A)-specific ribonu 96.3 0.0066 2.3E-07 48.3 5.7 54 160-221 7-60 (101)
396 3ctr_A Poly(A)-specific ribonu 96.2 0.0057 2E-07 48.7 5.1 53 34-93 7-60 (101)
397 2l08_A Regulator of nonsense t 95.5 0.025 8.5E-07 45.1 5.9 69 31-99 8-80 (97)
398 2l08_A Regulator of nonsense t 95.0 0.019 6.5E-07 45.8 3.9 65 516-580 9-81 (97)
399 3pq1_A Poly(A) RNA polymerase; 93.9 0.023 8E-07 59.1 2.7 56 31-91 52-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 93.4 0.044 1.5E-06 57.0 3.7 56 159-219 53-108 (464)
401 3d45_A Poly(A)-specific ribonu 79.9 4.3 0.00015 42.9 8.4 57 158-222 439-495 (507)
402 4eyt_A Telomerase associated p 79.4 11 0.00037 28.9 8.0 59 515-575 11-69 (129)
403 3d45_A Poly(A)-specific ribonu 76.5 6.2 0.00021 41.7 8.3 56 517-575 441-496 (507)
404 2g0c_A ATP-dependent RNA helic 74.1 9.4 0.00032 28.5 6.7 66 518-586 2-73 (76)
405 2vfx_A Mitotic spindle assembl 52.9 26 0.00089 31.9 6.5 62 264-331 69-130 (206)
406 3fry_A Probable copper-exporti 52.1 29 0.00098 25.0 5.6 59 516-576 6-64 (73)
407 3dxs_X Copper-transporting ATP 42.6 67 0.0023 22.8 6.4 55 517-571 4-62 (74)
408 2g0c_A ATP-dependent RNA helic 42.6 52 0.0018 24.2 5.7 59 170-236 12-75 (76)
409 4aez_B MAD2, mitotic spindle c 42.5 27 0.00093 31.7 4.8 41 264-304 67-107 (203)
410 4e8u_A Putative uncharacterize 41.0 50 0.0017 29.0 6.0 56 518-573 14-84 (172)
411 2l3m_A Copper-ION-binding prot 39.6 91 0.0031 21.4 6.9 59 517-576 7-69 (71)
412 4eyt_A Telomerase associated p 39.5 1.3E+02 0.0043 23.0 7.6 56 158-220 11-66 (129)
413 1wj6_A KIAA0049 protein, RSGI 36.3 41 0.0014 26.6 4.2 56 524-586 32-92 (101)
414 4a4j_A Pacszia, cation-transpo 36.0 1.1E+02 0.0036 21.2 6.9 55 517-571 4-61 (69)
415 2xmw_A PACS-N, cation-transpor 33.1 1.2E+02 0.0039 20.7 6.9 58 517-575 5-65 (71)
416 1yg0_A COP associated protein; 32.8 1E+02 0.0034 20.7 5.9 55 518-572 4-61 (66)
417 3j21_T 50S ribosomal protein L 32.3 1.2E+02 0.0042 23.1 6.3 56 162-219 25-82 (86)
418 2bkf_A Zinc-finger protein NBR 31.7 58 0.002 25.0 4.3 55 525-586 25-84 (87)
419 1kvi_A Copper-transporting ATP 30.9 1.4E+02 0.0048 21.0 7.3 60 516-576 9-72 (79)
420 1cpz_A Protein (COPZ); copper 30.2 1.3E+02 0.0043 20.3 7.8 57 518-575 3-63 (68)
421 1q8l_A Copper-transporting ATP 29.5 1.6E+02 0.0055 21.3 8.3 59 517-576 11-73 (84)
422 2kt2_A Mercuric reductase; nme 28.6 1.4E+02 0.0047 20.3 7.1 57 518-575 3-62 (69)
423 2ofg_X Zinc-transporting ATPas 28.5 1.6E+02 0.0053 23.1 6.9 61 516-577 9-73 (111)
424 1osd_A MERP, hypothetical prot 27.9 1.5E+02 0.005 20.3 7.0 58 517-575 5-66 (72)
425 4e8u_A Putative uncharacterize 26.3 1E+02 0.0035 27.0 5.6 48 161-210 14-72 (172)
426 1yjr_A Copper-transporting ATP 25.4 1.7E+02 0.0057 20.1 7.8 56 517-572 6-65 (75)
427 3cjk_B Copper-transporting ATP 24.9 1.8E+02 0.006 20.2 6.7 58 518-576 5-66 (75)
428 3iwl_A Copper transport protei 24.8 1.7E+02 0.006 20.2 6.0 53 517-571 4-57 (68)
429 1aw0_A Menkes copper-transport 23.4 1.4E+02 0.0046 20.5 5.2 58 517-575 5-66 (72)
430 1fvq_A Copper-transporting ATP 23.2 1.7E+02 0.006 19.8 5.8 57 518-575 5-64 (72)
431 3abd_A Mitotic spindle assembl 22.4 83 0.0028 29.0 4.5 39 264-303 83-121 (227)
432 1mwy_A ZNTA; open-faced beta-s 21.7 2E+02 0.0069 19.8 8.3 58 517-575 5-64 (73)
433 2g9o_A Copper-transporting ATP 20.4 1.7E+02 0.0059 21.7 5.4 56 517-572 5-64 (90)
434 1y3j_A Copper-transporting ATP 20.4 1.8E+02 0.0061 20.4 5.4 59 517-576 5-67 (77)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.2e-40 Score=334.56 Aligned_cols=161 Identities=11% Similarity=0.138 Sum_probs=139.3
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
...+..++|||+|||+++|+++| ++|++||+|.+|+|++++.+ ++|||||+|.+.++|++|++ +++..|.|++|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 34457789999999999999999 89999999999999998755 58999999999999999994 89999999999999
Q ss_pred ecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcC-
Q psy1534 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG- 184 (587)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G- 184 (587)
++. .++|||+|||+++++++|+++|+.||
T Consensus 114 ~~~--------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~ 143 (292)
T 2ghp_A 114 HLT--------------------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINV 143 (292)
T ss_dssp ECC--------------------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTC
T ss_pred ECC--------------------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCC
Confidence 864 35899999999999999999999999
Q ss_pred CeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 185 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
.|..|.|++++.+.++|||||+|.+.++|.+|++.||+..+.|++|.|.++.+..
T Consensus 144 ~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 144 VALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp CCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 9999999999888899999999999999999999999999999999999987553
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.1e-40 Score=329.96 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=141.7
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..++|||+|||+++|+++| ++|++|| |.+|++ ++++|||||+|.+.++|++|++.|++..|.|++|.|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence 5589999999999999999 8999999 999988 45689999999999999999999999999999999998652
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
.++|||+|||+++++++|+++|++||.|..|
T Consensus 95 -------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~ 125 (284)
T 3smz_A 95 -------------------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERC 125 (284)
T ss_dssp -------------------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred -------------------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE
Confidence 2589999999999999999999999999999
Q ss_pred EEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 190 EIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 190 ~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.+++++ +|+++|||||+|.+.++|.+|++.||+..+.|++|.|.++.+
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 999987 499999999999999999999999999999999999998754
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.2e-33 Score=269.60 Aligned_cols=167 Identities=23% Similarity=0.340 Sum_probs=150.4
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+..+|||+|||+++|+++| ++|++||+|++|+|++|+ +++++|||||+|.+.++|++|++.+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4568999999999999999 899999999999999997 89999999999999999999999999999999999999887
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
..... .....++|||+|||+++++++|+++|++||.|.+
T Consensus 94 ~~~~~-----------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 132 (213)
T 4f02_A 94 RDPSL-----------------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 132 (213)
T ss_dssp CCTHH-----------------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred ccccc-----------------------------------------cccccccceECCcccccHHHHHHHHHhhcCCeEE
Confidence 33210 0012368999999999999999999999999999
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 189 v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
|+|+++.. .++|||||+|.+.++|++||+.|||..|.|++|.|+++.++.
T Consensus 133 ~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 133 CKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred EEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 99999864 479999999999999999999999999999999999987653
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-33 Score=253.87 Aligned_cols=163 Identities=18% Similarity=0.277 Sum_probs=150.3
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
++|||+|||.++++++| ++|++||+|.+|+|+++++++++|||||+|.+.++|++|++.|++..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999 89999999999999999988999999999999999999999999999999999999987442
Q ss_pred CCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEE
Q psy1534 112 GGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEI 191 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 191 (587)
.. ...+.++|||+|||+++++++|+++|++||.|.++.+
T Consensus 81 ~~-----------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 119 (166)
T 3md3_A 81 QS-----------------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119 (166)
T ss_dssp CC-----------------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred CC-----------------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence 10 1234579999999999999999999999999999999
Q ss_pred eeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 192 ALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 192 ~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
++++. +.++|||||+|.+.++|.+|++.||+..+.|++|+|.+++
T Consensus 120 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 120 MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99964 9999999999999999999999999999999999999985
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.2e-32 Score=252.17 Aligned_cols=162 Identities=22% Similarity=0.362 Sum_probs=150.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+.++|||+|||.++++++| ++|++||+|.+|+|++++ +|+++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4578999999999999999 899999999999999996 89999999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
++.. ....++|||+|||.++++++|+++|++||.|..
T Consensus 82 ~~~~-------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 82 PGGE-------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp CCSS-------------------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred CCcc-------------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 4421 123579999999999999999999999999999
Q ss_pred EEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q psy1534 189 VEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMD 235 (587)
Q Consensus 189 v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a 235 (587)
+.+++++ +++++|||||+|.+.++|.+|++.||+..+.| ++|+|++|
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999998 59999999999999999999999999999987 99999885
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.3e-32 Score=256.99 Aligned_cols=175 Identities=23% Similarity=0.340 Sum_probs=149.6
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
.+...++|||+|||+++|+++| ++|++||+|.+|+|++++ +|+++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 3456779999999999999999 899999999999999997 899999999999999999999976 9999999999999
Q ss_pred ecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q psy1534 106 EAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185 (587)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 185 (587)
++........ .......++|||+|||+++++++|+++|++||.
T Consensus 88 ~~~~~~~~~~-------------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 130 (196)
T 1l3k_A 88 RAVSREDSQR-------------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130 (196)
T ss_dssp ECCC------------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSC
T ss_pred cccCcccccc-------------------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC
Confidence 9874421100 001233579999999999999999999999999
Q ss_pred eeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q psy1534 186 VENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241 (587)
Q Consensus 186 i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 241 (587)
|..|.|++++ +++++|||||+|.+.++|.+|+.. ++..|.|+.|.|+++.++...
T Consensus 131 i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999998 499999999999999999999976 899999999999999887643
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.1e-32 Score=249.32 Aligned_cols=161 Identities=22% Similarity=0.420 Sum_probs=148.1
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
.++|||+|||+++++++| ++|++||+|.+|++++++ +|+++|||||+|.++++|++|++.|++..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 478999999999999999 899999999999999997 999999999999999999999999999999999999999874
Q ss_pred ccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE
Q psy1534 110 DKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENV 189 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 189 (587)
... ....++|||+|||.++++++|+++|++||.|.++
T Consensus 82 ~~~-------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 82 SSA-------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp CCG-------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred Ccc-------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 321 1124689999999999999999999999999999
Q ss_pred EEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE--EEEEEc
Q psy1534 190 EIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR--ITVRMD 235 (587)
Q Consensus 190 ~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~--l~v~~a 235 (587)
.+++++ +++++|||||+|.+.++|.+|++.|||..+.|+. |.|+||
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999988 5899999999999999999999999999999975 777765
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.7e-32 Score=263.89 Aligned_cols=179 Identities=20% Similarity=0.349 Sum_probs=153.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||.++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4578999999999999999 899999999999999997 99999999999999999999999999999999999998876
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
...... .............++|||+|||.++++++|+++|++||.|.+
T Consensus 107 ~~~~~~--------------------------------~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 107 NIGQAQ--------------------------------PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp CCGGGH--------------------------------HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred Cccccc--------------------------------hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE
Confidence 332100 000000001234579999999999999999999999999999
Q ss_pred EEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q psy1534 189 VEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADRL 241 (587)
Q Consensus 189 v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~~ 241 (587)
|+|++++ +++++|||||+|.+.++|.+|++.||+..|.|++|.|.++......
T Consensus 155 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 155 ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999997 4999999999999999999999999999999999999999887543
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=8e-32 Score=250.12 Aligned_cols=164 Identities=21% Similarity=0.322 Sum_probs=147.4
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CC--CcceEEEEEECCHHHHHHHHHHhCCceeC---CeEEE
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TG--KPRGSAIVEFQSPDLVRKAVNKMHRFETK---GRKLV 103 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g--~skG~aFV~F~~~e~A~~Al~~l~g~~l~---gr~i~ 103 (587)
..++|||+|||+++++++| ++|++||+|.+|+|++++ ++ +++|||||+|.+.++|++|++.|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4679999999999999999 899999999999999997 54 89999999999999999999999998876 68888
Q ss_pred EEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhc
Q psy1534 104 IKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLA 183 (587)
Q Consensus 104 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~ 183 (587)
+.++..+.. .....++|||+|||+++++++|+++|++|
T Consensus 82 ~~~~~~~~~------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 119 (175)
T 3nmr_A 82 MKPADSEKN------------------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSF 119 (175)
T ss_dssp EEECGGGCC------------------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG
T ss_pred Ecccccccc------------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC
Confidence 888774421 11235799999999999999999999999
Q ss_pred CCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEEcc
Q psy1534 184 GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF---ERRITVRMDR 236 (587)
Q Consensus 184 G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~v~~a~ 236 (587)
|.|.+|.++++++|+++|||||+|.+.++|.+|++.|||..+. +++|.|+||.
T Consensus 120 G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 120 GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999988999999999999999999999999998876 4999999873
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.6e-32 Score=250.63 Aligned_cols=162 Identities=24% Similarity=0.392 Sum_probs=147.3
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+.++|||+|||+++|+++| ++|++||+|.+|+|++++ +|+++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 3578999999999999999 899999999999999996 899999999999999999999984 678999999999887
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
.+.. ....++|||+|||+++++++|+++|++||.|.+
T Consensus 80 ~~~~-------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 80 PRDE-------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp CHHH-------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred chhh-------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEE
Confidence 3321 012468999999999999999999999999999
Q ss_pred EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 189 VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 189 v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
|.+++++. ++++|||||+|.+.++|.+|++ +++..+.|++|.|+++.++
T Consensus 117 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999974 9999999999999999999997 8999999999999998765
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=8e-31 Score=263.38 Aligned_cols=197 Identities=12% Similarity=0.123 Sum_probs=171.0
Q ss_pred CCCchhHHHHHHcCCCCCccccccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEEC
Q psy1534 3 SPVTETELVEQIAHQDFPMFQRIETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQ 80 (587)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~ 80 (587)
++-+...|...+++..+....-.-...+...+|||+|||+++++++| ++|++||+|.+|+|++++ +|+++|||||+|.
T Consensus 66 ~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 145 (284)
T 3smz_A 66 NGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYM 145 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEEC
Confidence 34455667777777766544222233456789999999999999999 899999999999999997 9999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCc
Q psy1534 81 SPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLIN 160 (587)
Q Consensus 81 ~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (587)
+.++|.+|++.|++..+.|++|.|.++.++.... .....+
T Consensus 146 ~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~----------------------------------------~~~~~~ 185 (284)
T 3smz_A 146 KKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP----------------------------------------ALLHSR 185 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT----------------------------------------TTTSCS
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc----------------------------------------ccCCcc
Confidence 9999999999999999999999999998543110 123457
Q ss_pred EEEEecCCCCC-cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 161 KVFVANLDYKV-DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 161 ~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
+|||+|||+++ ++++|+++|++||.|.+|.|+++.+|+++|||||+|.+.++|.+|++.|||..+.|++|.|.++.++.
T Consensus 186 ~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 186 CLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp EEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred EEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 99999999995 99999999999999999999999999999999999999999999999999999999999999997765
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.6e-30 Score=245.75 Aligned_cols=192 Identities=16% Similarity=0.193 Sum_probs=145.8
Q ss_pred CCCCcEEEcCCC-CCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQ-GDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp-~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
++..+|||+||| +++++++| ++|++||+|.+|+|+++ +||||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 456799999999 89999999 89999999999999986 4799999999999999999999999999999999998
Q ss_pred ccccCCCCC-CCCCCCCC--CchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcC
Q psy1534 108 VEDKGGRRN-MGGGGGVD--RDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG 184 (587)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 184 (587)
..+...... .....+.. .+.... ....+ . ...........++.++|||+|||+++++++|+++|++||
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~r~----~--~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G 148 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSES---RNNRF----S--TPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG 148 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTC---TTCSC----S--SHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT
T ss_pred cCCccCCCcccccccCCccccccCCC---ccccc----c--CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 744321000 00000000 000000 00000 0 000001111235678999999999999999999999999
Q ss_pred Ce--eEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe----EEEEEEc
Q psy1534 185 KV--ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER----RITVRMD 235 (587)
Q Consensus 185 ~i--~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~----~l~v~~a 235 (587)
.| .+|+++.++ +.++|||||+|.+.++|.+||..||+..|.|+ ++.|+++
T Consensus 149 ~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 149 VKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99 899998876 55679999999999999999999999999876 6777775
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=5.6e-30 Score=237.09 Aligned_cols=156 Identities=21% Similarity=0.302 Sum_probs=141.8
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccC----C-------CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTV----G-------DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK 98 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~----G-------~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~ 98 (587)
..++|||+|||+++|+++| ++|++| | .|.++++.++ +|||||+|.++++|++|+ .||+..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4579999999999999999 899999 7 8888887654 799999999999999999 89999999
Q ss_pred CeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHH
Q psy1534 99 GRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLRE 178 (587)
Q Consensus 99 gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~ 178 (587)
|++|.|.++.... .....++|||+|||+++++++|++
T Consensus 77 g~~i~v~~~~~~~-------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~ 113 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ-------------------------------------------PLPGAHKLFIGGLPNYLNDDQVKE 113 (172)
T ss_dssp TEECEEECCSSCC-------------------------------------------CCTTTTCEEEECCCTTCCHHHHHH
T ss_pred CceeeecCCcccC-------------------------------------------CCCCCCEEEEEcCCCcCCHHHHHH
Confidence 9999999876332 111256899999999999999999
Q ss_pred HHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 179 VFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 179 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
+|++||.|.+|.+++++ +++++|||||+|.+.++|.+|++.||+..+.|++|.|++|
T Consensus 114 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999997 5999999999999999999999999999999999999987
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.8e-29 Score=237.98 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=147.3
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccC----C-------CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTV----G-------DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK 98 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~----G-------~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~ 98 (587)
..++|||+|||+++++++| ++|++| | .|.++++. +++|||||+|.+.++|++|+ .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 4689999999999999999 899999 5 67777664 45899999999999999999 89999999
Q ss_pred CeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHH
Q psy1534 99 GRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLRE 178 (587)
Q Consensus 99 gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~ 178 (587)
|++|.|.++.......... . .. ... .+. ..........++|||+|||+++++++|++
T Consensus 77 g~~i~v~~~~~~~~~~~~~--~----~~--------~~~-------~~~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 133 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMS--E----NP--------SVY-------VPG--VVSTVVPDSAHKLFIGGLPNYLNDDQVKE 133 (198)
T ss_dssp TEEEEEECCCCCCCCCCSS--S----CS--------SCC-------CTT--SSCCCSSCCCCEEEEECCCTTCCHHHHHH
T ss_pred CceEEEeCCCCCCCCCCCc--C----CC--------cCC-------CCC--CccCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 9999999987442111000 0 00 000 000 00011234578999999999999999999
Q ss_pred HHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q psy1534 179 VFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVADR 240 (587)
Q Consensus 179 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~~ 240 (587)
+|++||.|.+|.+++++ ++.++|||||+|.+.++|.+|++.||+..+.|++|.|+++.++.+
T Consensus 134 ~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 134 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999997 599999999999999999999999999999999999999987754
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.4e-30 Score=241.98 Aligned_cols=165 Identities=18% Similarity=0.313 Sum_probs=143.3
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+...++|||+|||+++++++| ++|++||.|..+.+....+++++|||||+|.+.++|++|+ .|++..|.|++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 3456789999999999999999 7899999887743333348899999999999999999999 5999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCe
Q psy1534 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKV 186 (587)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i 186 (587)
+..+... .....++|||+|||+++++++|+++|++||.|
T Consensus 88 ~~~~~~~-----------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 88 PKGRDSK-----------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp CCCSSCS-----------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred CCCcccc-----------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 8844210 11235799999999999999999999999987
Q ss_pred eEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 187 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
..+ ..+++++|||||+|.+.++|.+|++.|||..+.|++|.|+++.++
T Consensus 127 ~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 127 RLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 765 456889999999999999999999999999999999999998765
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=6.9e-29 Score=248.98 Aligned_cols=202 Identities=17% Similarity=0.193 Sum_probs=148.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-----HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-----SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-----~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
.+..++|||+|||+++++++| ++|++||+|.+|+|++ ++++||||||+|.+.++|++|++.||+..|.|++|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 356789999999999999995 5899999999999886 788999999999999999999999999999999999
Q ss_pred EEecccccCC--CCCCCC-CCCCCCch--------hhhhccCC------------------------c------------
Q psy1534 104 IKEAVEDKGG--RRNMGG-GGGVDRDL--------SALLQNNS------------------------S------------ 136 (587)
Q Consensus 104 V~~a~~~~~~--~~~~~~-~~~~~~~~--------~~~~~~~~------------------------~------------ 136 (587)
|.++..+... +..+.. .+...... ........ .
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 9998743311 000000 00000000 00000000 0
Q ss_pred ----ccCCCCCCCh---------------hhh--hccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC
Q psy1534 137 ----KFGNTYGLSP---------------QFL--ESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK 195 (587)
Q Consensus 137 ----~~~~~~~~~~---------------~~~--~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 195 (587)
.........+ ... .......++.++|||+|||.++++++|+++|++||.|.+|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 0000000000 000 0001234467899999999999999999999999999999999764
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q psy1534 196 DGKSRGFGTVEFDHPVEAVQSISMLNNQNLF-ERRITVRMDR 236 (587)
Q Consensus 196 ~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~a~ 236 (587)
+|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999985
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.5e-29 Score=255.18 Aligned_cols=173 Identities=19% Similarity=0.221 Sum_probs=147.4
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....+|||+|||+++++++| ++|++|| +|.+|+|++++.+.++|||||+|.+.++|.+|++.|++..|.|++|.|.+
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999 8999999 99999999998888999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCC-CcHHHHHHHHHhcCC
Q psy1534 107 AVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYK-VDEKKLREVFRLAGK 185 (587)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~ 185 (587)
+.++...... .......++|||+|||++ +++++|+++|++||.
T Consensus 194 a~~~~~~~~~------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 194 SNPLEKSKRT------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGS 237 (292)
T ss_dssp CCCC---------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC
T ss_pred CCCCcccccc------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCC
Confidence 8844321100 012334679999999999 999999999999999
Q ss_pred eeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 186 VENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 186 i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
|..|+|+++.. +.++|||||+|.+.++|.+|+ .|||..|.|++|.|.++.++
T Consensus 238 v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 238 IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999987 999999999999999999999 99999999999999999875
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=6.9e-29 Score=241.02 Aligned_cols=193 Identities=16% Similarity=0.234 Sum_probs=148.8
Q ss_pred CCCCCcEEEcCCCC-CCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQG-DASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~-~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+...+|||+|||+ ++++++| ++|++||+|.+|+|++++ +|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999 9999999 899999999999999985 78999999999999999999999999999999999
Q ss_pred cccccCCCCCCC-CCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcC-
Q psy1534 107 AVEDKGGRRNMG-GGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG- 184 (587)
Q Consensus 107 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G- 184 (587)
+..+........ .......+..... .. .... ..........++.++|||+|||+++++++|+++|++||
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~--~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSP---LH----RFKK--PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCS---SC----CCCS--TTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred ecCccccCccccccccccccccccCc---cc----ccCC--ccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 974422111000 0000000000000 00 0000 00011112345678999999999999999999999999
Q ss_pred CeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q psy1534 185 KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF-ERRITVRMDRVA 238 (587)
Q Consensus 185 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~a~~~ 238 (587)
.|.+|+|+.+ .+|||||+|.+.++|.+|++.||+..+. |++|+|.|++++
T Consensus 178 ~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999663 3689999999999999999999999999 999999998764
No 19
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2.8e-28 Score=234.01 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||++++|++|+++|++||.|.+|+|++|+. ++++|||||+|.+.++|++||+.+|+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3568999999999999999999999999999999999985 999999999999999999999999999999999998775
Q ss_pred cC
Q psy1534 236 RV 237 (587)
Q Consensus 236 ~~ 237 (587)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2e-28 Score=242.61 Aligned_cols=156 Identities=23% Similarity=0.262 Sum_probs=143.6
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...++|||+|||+++|+++| ++|++||+|.+|+|.++ +|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45568999999999999999 89999999999999764 7999999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE
Q psy1534 109 EDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN 188 (587)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 188 (587)
. .++|||+|||+.+++++|+++|+.||.|.+
T Consensus 95 ~-------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 125 (261)
T 3sde_A 95 H-------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEK 125 (261)
T ss_dssp C-------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred c-------------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEE
Confidence 2 258999999999999999999999999999
Q ss_pred EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC-CceeC---CeEEEEEEccCCC
Q psy1534 189 VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN-NQNLF---ERRITVRMDRVAD 239 (587)
Q Consensus 189 v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~-g~~~~---g~~l~v~~a~~~~ 239 (587)
|.|+++.+|+++|||||+|.+.++|.+|+..|| +..+. +++|.|.++....
T Consensus 126 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 126 AVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999889999999999999999999999994 55555 9999999987654
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1e-28 Score=234.21 Aligned_cols=191 Identities=17% Similarity=0.249 Sum_probs=147.2
Q ss_pred CCCcEEEcCCCC-CCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQG-DASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~-~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||. ++++++| ++|++||+|.+|+|++++ +|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357899999999 9999999 899999999999999875 6899999999999999999999999999999999988
Q ss_pred cccCCCCCCCCC-CCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcC-Ce
Q psy1534 109 EDKGGRRNMGGG-GGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAG-KV 186 (587)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i 186 (587)
.+.......... .....+.... ....+.. ..........++.++|||+|||..+++++|+++|++|| .|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNS---PLHRFKK------PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCC---CTTSSSS------CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCcCCccccccccccCC---chhhccC------ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 443211110000 0000000000 0000000 00000111235678999999999999999999999999 99
Q ss_pred eEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q psy1534 187 ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF-ERRITVRMDRVA 238 (587)
Q Consensus 187 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~a~~~ 238 (587)
.+|.|+.+. +|||||+|.+.++|.+|++.||+..+. |++|+|.|++++
T Consensus 149 ~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 149 KGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999997643 789999999999999999999999999 999999998764
No 22
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-27 Score=216.38 Aligned_cols=78 Identities=23% Similarity=0.461 Sum_probs=73.5
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
++|||+|||+++++++|+++|++||.|.+|.|++++.++++|||||+|.+.++|.+|++.||+..+.|++|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 489999999999999999999999999999999999889999999999999999999999999999999999988643
No 23
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1e-26 Score=214.07 Aligned_cols=80 Identities=24% Similarity=0.423 Sum_probs=75.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
+.++|||+|||+++++++|+++|++||.|.+|.+++++ +++++|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35799999999999999999999999999999999987 48999999999999999999999999999999999998865
Q ss_pred C
Q psy1534 237 V 237 (587)
Q Consensus 237 ~ 237 (587)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=3.3e-26 Score=210.35 Aligned_cols=79 Identities=28% Similarity=0.488 Sum_probs=75.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|+.||.|.+|.+++++ +++++|||||+|.+.++|.+|++.||+..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999998 599999999999999999999999999999999999988653
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.5e-25 Score=223.03 Aligned_cols=83 Identities=14% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHH----HHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLR----EVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 230 (587)
+..+.++|||+|||+++++++|+ ++|++||.|.+|+|++ +++++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 34567899999999999999977 8999999999999886 57889999999999999999999999999999999
Q ss_pred EEEEccCCC
Q psy1534 231 TVRMDRVAD 239 (587)
Q Consensus 231 ~v~~a~~~~ 239 (587)
+|.+++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986554
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=3.6e-26 Score=219.60 Aligned_cols=79 Identities=25% Similarity=0.481 Sum_probs=71.4
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5799999999999999999999999999999999988 589999999999999999999999999999999999976543
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=6.6e-26 Score=214.28 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=74.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|.+||+. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3468999999999999999999999999999999999985 89999999999999999999976 999999999999886
Q ss_pred cCC
Q psy1534 236 RVA 238 (587)
Q Consensus 236 ~~~ 238 (587)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 543
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=1.2e-25 Score=213.63 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCcEEEEecCC-CCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLD-YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
++++|||+||| +.+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.|||..+.|++|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46799999999 899999999999999999999998863 7999999999999999999999999999999999987
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
.+.
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 554
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=1.3e-25 Score=208.15 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=64.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCC---CcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDG---KSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g---~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
.++|||+|||+++++++|+++|++||.|.+|+|++++.+ +++|||||+|.+.++|++|++.||+..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 579999999999999999999999999999999999864 89999999999999999999999998765
No 30
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=6.1e-25 Score=213.14 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.++.++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++|++.||+..+.|++|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999 99999999999999999999999875 78999999999999999999999999999999999
Q ss_pred ccCCC
Q psy1534 235 DRVAD 239 (587)
Q Consensus 235 a~~~~ 239 (587)
++...
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 87654
No 31
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.2e-24 Score=206.08 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=72.4
Q ss_pred CcEEEEecCCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++.||+..+.|++|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 47999999999 99999999999999999999999875 78999999999999999999999999999999999876
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 32
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=1e-24 Score=201.50 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=66.2
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC------CCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK------GDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~------~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.+|+|+|||.++|+++|+++|++||.|..+.+..+ +|+|||+|++.++|++|++.|||..|+|++|+|.+
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 49999999999999999999999999999999665 47999999999999999999999999999999985
No 33
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.92 E-value=1.7e-25 Score=205.86 Aligned_cols=75 Identities=29% Similarity=0.517 Sum_probs=69.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.++|||+|||+++++++|+++|++||.|.+|.|++++. |+++|||||+|.+.++|++|++. +..+.|+.|.|.++
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 57999999999999999999999999999999999974 99999999999999999999984 67889998877664
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=4.9e-24 Score=201.71 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=67.0
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC------CCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK------GDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~------~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.++|||.|||+++|+++|+++|++||.|..+.+..+ +|+|||+|.+.++|++||+.|||..|+|++|+|.+
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 469999999999999999999999999999999765 58999999999999999999999999999999986
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=2.2e-25 Score=206.80 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|+.||.+..+.+.....++++|||||+|.+.++|.+|+ .||+..+.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 44578999999999999999999999999876633333335888999999999999999999 59999999999999887
Q ss_pred cCC
Q psy1534 236 RVA 238 (587)
Q Consensus 236 ~~~ 238 (587)
...
T Consensus 89 ~~~ 91 (175)
T 1fje_B 89 KGR 91 (175)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=2.6e-23 Score=205.80 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=69.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++|+++|+++|+.||.|.+|.|.++ +|||||+|.+.++|.+|+..||+..+.|++|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 345689999999999999999999999999999999764 799999999999999999999999999999999774
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=2.3e-22 Score=183.29 Aligned_cols=150 Identities=20% Similarity=0.278 Sum_probs=114.9
Q ss_pred EEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccC
Q psy1534 60 YVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFG 139 (587)
Q Consensus 60 ~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (587)
+++|+.+.. +++|||||+|.+.++|++|++.+++....+..+.+............ ..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~--- 59 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG------------------SH--- 59 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC------------------CC---
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc------------------cc---
Confidence 567777754 58999999999999999999988764433333333322211000000 00
Q ss_pred CCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHH
Q psy1534 140 NTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSIS 218 (587)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~ 218 (587)
...........++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++||+
T Consensus 60 ---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 60 ---------HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp ---------CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHH
T ss_pred ---------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 00001123346899999999999999999999999999999999997 49999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCCC
Q psy1534 219 MLNNQNLFERRITVRMDRVADR 240 (587)
Q Consensus 219 ~l~g~~~~g~~l~v~~a~~~~~ 240 (587)
.||+..|.|++|.|+++++...
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HSTTEESSSSEEEEEEECCSSC
T ss_pred HhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999987653
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=6.4e-22 Score=169.94 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
+...+|||+|||+++++++| ++|++||+|.+|+|++|+. .+||||||+|.+.++|++||+.|++..|.|++|+|.++.
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45678999999999999999 8999999999999999863 489999999999999999999999999999999999987
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=7.8e-21 Score=171.42 Aligned_cols=139 Identities=22% Similarity=0.331 Sum_probs=113.1
Q ss_pred CCcceEEEEEECCHHHHHHHHHHh-CCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChh
Q psy1534 69 GKPRGSAIVEFQSPDLVRKAVNKM-HRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQ 147 (587)
Q Consensus 69 g~skG~aFV~F~~~e~A~~Al~~l-~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (587)
...+|+++|+|.+.++|++|++.+ |+..+.| +|.+.++..+...... ... .
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~------------------~~~---------~ 61 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG------------------SHH---------H 61 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS------------------SSS---------C
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc------------------ccc---------c
Confidence 356899999999999999999999 9999999 9999988733210000 000 0
Q ss_pred hhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy1534 148 FLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227 (587)
Q Consensus 148 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 227 (587)
..........+.++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|.+|++.||+..|.|
T Consensus 62 ~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 62 HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 00001113345689999999999999999999999999999999987 58999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q psy1534 228 RRITVRMDRVAD 239 (587)
Q Consensus 228 ~~l~v~~a~~~~ 239 (587)
++|+|+++.++.
T Consensus 138 ~~l~v~~a~~~~ 149 (150)
T 2i2y_A 138 CRVRVELSNGEK 149 (150)
T ss_dssp SCCEEEECCCCC
T ss_pred eEEEEEEcCCCC
Confidence 999999988764
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=151.25 Aligned_cols=79 Identities=14% Similarity=0.340 Sum_probs=75.5
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
....+|||+|||+++|+++| ++|++||+|.+|+|++|+ +|++||||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999 899999999999999997 8999999999999999999999999999999999999998
Q ss_pred c
Q psy1534 108 V 108 (587)
Q Consensus 108 ~ 108 (587)
.
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 6
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=147.51 Aligned_cols=80 Identities=29% Similarity=0.428 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+++|||+|||+++|+++|+++|++||.|.+|+|++|+. |+++|||||+|.+.++|++|++.|||..|.|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467999999999999999999999999999999999985 9999999999999999999999999999999999999987
Q ss_pred C
Q psy1534 237 V 237 (587)
Q Consensus 237 ~ 237 (587)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=151.21 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
+++.++|||+|||+++++++| ++|++||+|++|+|++|+ ++++||||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999999999999999 899999999999999997 899999999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+.+.
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8743
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=8.7e-19 Score=144.17 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=73.7
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCC--eEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCc----eeCCeE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGD--VTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRF----ETKGRK 101 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~--V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~----~l~gr~ 101 (587)
....+|||+|||+++|+++| ++|++||. |.+|+|++|+ +|++||||||+|.+.++|++|++.||+. .|.||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 46689999999999999999 89999995 6799999997 8999999999999999999999999986 599999
Q ss_pred EEEEecc
Q psy1534 102 LVIKEAV 108 (587)
Q Consensus 102 i~V~~a~ 108 (587)
|.|.++.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=143.48 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=78.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
++.++|||+|||+++++++|+++|++||.|.+|+|++|+. ++++|||||+|.+.++|++||+.||+..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567999999999999999999999999999999999986 999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=4.2e-18 Score=145.98 Aligned_cols=81 Identities=26% Similarity=0.462 Sum_probs=75.4
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
.++|||+|||+++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|++||+.||+..|.|++|.|.++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46899999999999999999999999999999999864 57999999999999999999999999999999999998775
Q ss_pred CC
Q psy1534 239 DR 240 (587)
Q Consensus 239 ~~ 240 (587)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=6e-19 Score=144.43 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=73.2
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCC-CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhC-CceeCCeEEEEEecc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVG-DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMH-RFETKGRKLVIKEAV 108 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G-~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~-g~~l~gr~i~V~~a~ 108 (587)
++|||+|||+++|+++| ++|++|| +|++|+|++|+ ++++||||||+|.+.++|++|++.++ +..|.|++|+|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 68999999999999999 8999999 89999999997 89999999999999999999999874 578999999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
+++
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 47
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=140.28 Aligned_cols=83 Identities=16% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
++..++|||+|||.++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 457789999999999999999 899999999999999997 899999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98554
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=140.72 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+...+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999 899999999999999996 99999999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998554
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=141.39 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=75.5
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcC-CeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEEc
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAG-KVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISML-NNQNLFERRITVRMD 235 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~~a 235 (587)
+++|||+|||+++||++|+++|++|| .|.+|+|++|+. ++++|||||+|.+.++|++||+.+ ++..+.|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 799999999985 999999999999999999999987 456799999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
.++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87764
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=139.87 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=78.9
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
......++|||+|||+++++++| ++|++||+|.+|+|+++++++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457789999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q psy1534 106 EAVED 110 (587)
Q Consensus 106 ~a~~~ 110 (587)
++.++
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99854
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=9.1e-18 Score=141.50 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=79.2
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC---eEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG---RKL 102 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g---r~i 102 (587)
...+..++|||+|||+++++++| ++|++||+|.+|+|+++++++++|||||+|.+.++|++|++.||+..+.+ ++|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34456789999999999999999 89999999999999999999999999999999999999999999999998 999
Q ss_pred EEEeccccc
Q psy1534 103 VIKEAVEDK 111 (587)
Q Consensus 103 ~V~~a~~~~ 111 (587)
+|.++..+.
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999998554
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.2e-17 Score=143.33 Aligned_cols=86 Identities=13% Similarity=0.240 Sum_probs=79.7
Q ss_pred cCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 26 ETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 26 ~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
....+..++|||+|||+++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344456789999999999999999 899999999999999997 999999999999999999999999999999999999
Q ss_pred EEeccccc
Q psy1534 104 IKEAVEDK 111 (587)
Q Consensus 104 V~~a~~~~ 111 (587)
|.++.++.
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99998554
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=140.22 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=78.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
....++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999 899999999999999997 999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98654
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=137.11 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=74.6
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
+...+|||+|||.++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35678999999999999999 899999999999999996 9999999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 743
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=139.89 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
.......+|||+|||+++++++| ++|++||+|.+|+|+++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34457789999999999999999 89999999999999999 99999999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998554
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=142.39 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=79.9
Q ss_pred cCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 26 ETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 26 ~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
....+...+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344567789999999999999999 899999999999999997 999999999999999999999999999999999999
Q ss_pred EEeccccc
Q psy1534 104 IKEAVEDK 111 (587)
Q Consensus 104 V~~a~~~~ 111 (587)
|.++..++
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99998554
No 57
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.2e-18 Score=153.76 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=79.7
Q ss_pred eEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhcc
Q psy1534 73 GSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESL 152 (587)
Q Consensus 73 G~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (587)
-++|++|++...|.+|++.+++....++.- +.+..+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~------------------------------------------- 40 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP------------------------------------------- 40 (135)
T ss_dssp -------------------------------CCSCCS-------------------------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC-------------------------------------------
Confidence 367888888888899998888765544321 000000
Q ss_pred CCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 153 GINCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 153 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
.......++|||+|||+++++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|++||+.||+..|.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 00122357999999999999999999999999999999999874 89999999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q psy1534 232 VRMDRVADRL 241 (587)
Q Consensus 232 v~~a~~~~~~ 241 (587)
|++++.....
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=138.22 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34467789999999999999999 899999999999999997 7999999999999999999999999999999999999
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 59
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=139.37 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=77.5
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
.....++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++ |++..|.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3457789999999999999999 899999999999999997 89999999999999999999998 99999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998554
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=140.17 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEE-EEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYV-EILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v-~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
+..++|||+|||+++++++| ++|++||+|.+| +|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46789999999999999999 899999999999 999995 999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98554
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.3e-17 Score=133.98 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=74.5
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
.+|||+|||.++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..+.|++|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999 899999999999999996 9999999999999999999999999999999999999999854
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=6.4e-18 Score=136.49 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=75.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457789999999999999999 899999999999999995 999999999999999999999999999999999999998
Q ss_pred cc
Q psy1534 107 AV 108 (587)
Q Consensus 107 a~ 108 (587)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=137.67 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
..++..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999 899999999999999997 8999999999999999999999999999999999999
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9886
No 64
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=140.60 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=78.6
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+..++|||+|||+++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457789999999999999999 899999999999999996 89999999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++..+.
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998554
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=141.67 Aligned_cols=85 Identities=24% Similarity=0.237 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.......+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999 899999999999999997 7999999999999999999999999999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998543
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=143.54 Aligned_cols=82 Identities=17% Similarity=0.307 Sum_probs=77.8
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
....+|||+|||+++++++| ++|++||+|++|+|+++++++++|||||+|.+.++|++|++.||+..|.|++|+|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 46689999999999999999 89999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=9.6e-18 Score=138.56 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=76.4
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+..++|||+|||+++++++| ++|++||+|++|+|+++++++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456689999999999999999 899999999999999998899999999999999999999999999999999999998
Q ss_pred cc
Q psy1534 107 AV 108 (587)
Q Consensus 107 a~ 108 (587)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=141.56 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=79.5
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+..++|||+|||+++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457789999999999999999 899999999999999997 8999999999999999999999999999999999999
Q ss_pred EecccccC
Q psy1534 105 KEAVEDKG 112 (587)
Q Consensus 105 ~~a~~~~~ 112 (587)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99986543
No 69
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.7e-17 Score=151.90 Aligned_cols=141 Identities=19% Similarity=0.257 Sum_probs=79.1
Q ss_pred EEECCHHHHHHHHHHhCCceeC--CeEEEEEecccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCC
Q psy1534 77 VEFQSPDLVRKAVNKMHRFETK--GRKLVIKEAVEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGI 154 (587)
Q Consensus 77 V~F~~~e~A~~Al~~l~g~~l~--gr~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (587)
.+|++.++|+.|+..|++.... |+.+.+.+..+..... +.... + ..+........
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~-------------~~~~~-------~---s~~~~~~~~~~ 67 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS-------------YERVR-------N---EDDDELEPGPQ 67 (165)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC-------------ccccc-------c---CCCCCCCCCCC
Confidence 7999999999999998875554 5555444432111000 00000 0 00000001111
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
...+.++|||+|||+.+++++|+++|++||.|..|.|++++ ++.++|||||+|.+.++|++||+.||+..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 23456899999999999999999999999999999999997 49999999999999999999999999999999999999
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
++..+..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987664
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=133.57 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=75.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
+.++|||+|||+++++++|+++|++||.|.+|.|++++ .++++|||||+|.+.++|++|++.||+..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46799999999999999999999999999999999997 59999999999999999999999999999999999999987
Q ss_pred CC
Q psy1534 237 VA 238 (587)
Q Consensus 237 ~~ 238 (587)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 71
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=140.16 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhC------CceeC
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMH------RFETK 98 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~------g~~l~ 98 (587)
......++|||+|||+++++++| ++|++||+|.+|+|++|+ +++++|||||+|.+.++|++|++.|| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 44557789999999999999999 899999999999999997 89999999999999999999999999 99999
Q ss_pred CeEEEEEeccccc
Q psy1534 99 GRKLVIKEAVEDK 111 (587)
Q Consensus 99 gr~i~V~~a~~~~ 111 (587)
|++|+|.++..+.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998553
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=3.5e-17 Score=131.49 Aligned_cols=80 Identities=25% Similarity=0.429 Sum_probs=76.3
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
.+|||+|||+++++++|+++|++||.|.+|.+++++. ++++|||||+|.+.++|++|++.||+..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999999964 999999999999999999999999999999999999999876
Q ss_pred C
Q psy1534 239 D 239 (587)
Q Consensus 239 ~ 239 (587)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.9e-17 Score=140.06 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=77.6
Q ss_pred ccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 25 IETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 25 ~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
.+...+...+|||+|||+++++++| ++|++||+|.+|+|+++++++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445567789999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q psy1534 104 IKEAV 108 (587)
Q Consensus 104 V~~a~ 108 (587)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 74
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=4e-17 Score=139.97 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.......+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457789999999999999999 899999999999999996 9999999999999999999999999999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++.++.
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9998554
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.3e-17 Score=137.54 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+...+|||+|||+++++++| ++|++|| |.+|+|++++ +++++|||||+|.+.++|++|+ .||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 44456789999999999999999 8999997 9999999997 8999999999999999999999 89999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998554
No 76
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=138.00 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEE--------EEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCce
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTY--------VEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFE 96 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~--------v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~ 96 (587)
..++...+|||+|||+++++++| ++|++||.|.+ |+|++++ +|+++|||||+|.+.++|++|++.||+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45567889999999999999999 89999999999 9999996 89999999999999999999999999999
Q ss_pred eCCeEEEEEecc
Q psy1534 97 TKGRKLVIKEAV 108 (587)
Q Consensus 97 l~gr~i~V~~a~ 108 (587)
|.|++|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 77
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=7e-18 Score=144.72 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=92.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
++..++|||+|||+++++++| ++|++||+|.+|+|+++ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456789999999999999999 89999999999999976 455899999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhccCCcccCCCCCCChhhhhccCCCCCCCcEEEEecCCCCCcHHHHHHHHHhcCC
Q psy1534 108 VEDKGGRRNMGGGGGVDRDLSALLQNNSSKFGNTYGLSPQFLESLGINCPLINKVFVANLDYKVDEKKLREVFRLAGK 185 (587)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 185 (587)
..+.. . .+++...++++|+++|++||.
T Consensus 83 ~~~~~-----------------------------------------------~----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRA-----------------------------------------------F----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHH-----------------------------------------------T----TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChh-----------------------------------------------h----hhhhHhHhHHHHHHHHHHhCC
Confidence 84431 0 456778899999999999984
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=136.80 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC----CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD----TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~----~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 56789999999999999999 899999999999999985 3489999999999999999999999999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998554
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=136.02 Aligned_cols=83 Identities=20% Similarity=0.452 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
...++|||+|||+++++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++|++.||+..+.|++|+|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 80
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=137.77 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=74.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCC--eeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCc----eeCCeEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGK--VENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQ----NLFERRI 230 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~l 230 (587)
.-.+|||+|||+++|+++|+++|++||. |.+|+|++|+. ++++|||||+|.+.++|++||+.||+. .|.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3579999999999999999999999995 67999999985 999999999999999999999999986 5899999
Q ss_pred EEEEccC
Q psy1534 231 TVRMDRV 237 (587)
Q Consensus 231 ~v~~a~~ 237 (587)
.|++|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 81
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.9e-17 Score=137.06 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=75.9
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
.++|||+|||.++++++| ++|++||+|.+|+|++++ +|+++|||||+|.+.++|++|++.||+..|.|++|+|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 478999999999999999 899999999999999996 899999999999999999999999999999999999999985
Q ss_pred cc
Q psy1534 110 DK 111 (587)
Q Consensus 110 ~~ 111 (587)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 82
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=140.04 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=76.4
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45578999999999999999 899999999999999997 8999999999999999999999999999999999999999
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
..+
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 854
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=140.40 Aligned_cols=86 Identities=16% Similarity=0.402 Sum_probs=79.6
Q ss_pred ccCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q psy1534 25 IETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102 (587)
Q Consensus 25 ~~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i 102 (587)
.+...+..++|||+|||.++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.|++..|.|++|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3455667789999999999999999 899999999999999996 89999999999999999999999999999999999
Q ss_pred EEEecccc
Q psy1534 103 VIKEAVED 110 (587)
Q Consensus 103 ~V~~a~~~ 110 (587)
+|.++.++
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998744
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.9e-17 Score=140.84 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+...+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 33456678999999999999999 899999999999999996 9999999999999999999999999999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998543
No 85
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=138.39 Aligned_cols=83 Identities=11% Similarity=0.169 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-C-CCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-T-GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~-g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
...+...+|||+|||+++++++| ++|++|| |.+|+|++++ + ++++|||||+|.+.++|++|| .||+..|.|++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 34456789999999999999999 8999999 9999999997 5 999999999999999999999 9999999999999
Q ss_pred EEeccccc
Q psy1534 104 IKEAVEDK 111 (587)
Q Consensus 104 V~~a~~~~ 111 (587)
|.++..+.
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998654
No 86
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=138.89 Aligned_cols=85 Identities=26% Similarity=0.344 Sum_probs=78.9
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeC-C-CCCcceEEEEEECCHHHHHHHHHHh-CCceeCCeEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILND-D-TGKPRGSAIVEFQSPDLVRKAVNKM-HRFETKGRKL 102 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d-~-~g~skG~aFV~F~~~e~A~~Al~~l-~g~~l~gr~i 102 (587)
...+...+|||+|||+++++++| ++|++||+|++|+|+++ + +++++|||||+|.+.++|++|++.| |+..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34457789999999999999999 89999999999999999 4 9999999999999999999999999 9999999999
Q ss_pred EEEeccccc
Q psy1534 103 VIKEAVEDK 111 (587)
Q Consensus 103 ~V~~a~~~~ 111 (587)
+|.++..+.
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998554
No 87
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=135.31 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=79.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++ .++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 446899999999999999999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887643
No 88
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=135.66 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
......++|||+|||+++++++| ++|++||+|.+|+|++++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457789999999999999999 89999999999999998755 89999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++..+.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998554
No 89
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=138.86 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=78.4
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-Hhccc-CCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCce-eCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLST-VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE-TKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~-~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~-l~gr~i~V 104 (587)
......+|||+|||+++++++| ++|++ ||+|.+|+|+++++++++|||||+|.+.++|++|++.|++.. |.|++|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3456789999999999999999 89999 999999999999999999999999999999999999999999 99999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9998554
No 90
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=3.5e-18 Score=139.71 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=70.5
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCC--CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVG--DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G--~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
.+|||+|||+++++++| ++|++|| +|.+|+|++|+ +|++||||||+|.+.++|++|++.||+..|.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 47999999999999999 8999999 99999999997 99999999999999999999999999999999999999998
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
.+
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 91
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=134.39 Aligned_cols=84 Identities=26% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
++.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3468999999999999999999999999999999999985 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87754
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-18 Score=140.53 Aligned_cols=79 Identities=23% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
....++|||+|||+++|+++| ++|++||+|.+|+|++|+++++||||||+|.+.++|++|++ +++..|.|++|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999 89999999999999999889999999999999999999998 8999999999999987
Q ss_pred c
Q psy1534 108 V 108 (587)
Q Consensus 108 ~ 108 (587)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 7
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-17 Score=137.59 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
.+..++|||+|||+++++++| ++|++||+|++|+|+++++++++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 356789999999999999999 8999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 743
No 94
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=4.8e-17 Score=139.47 Aligned_cols=86 Identities=26% Similarity=0.432 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.+..++|||+|||+++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+.||+..|.|++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9877643
No 95
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=145.27 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
......++|||+|||.++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456679999999999999999 899999999999999997 8999999999999999999999999999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998554
No 96
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=136.51 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=79.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456899999999999999999999999999999999997 499999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9877643
No 97
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=136.26 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....++|||+|||+++++++| ++|++||+|++|+|++++.. ++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999 89999999999999998643 689999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98554
No 98
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=5.4e-17 Score=136.72 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC---eEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE---RRITVR 233 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g---~~l~v~ 233 (587)
+..++|||+|||+++++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++||+.||+..+.+ ++|.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999989999999999999999999999999999998 999999
Q ss_pred EccCCCCC
Q psy1534 234 MDRVADRL 241 (587)
Q Consensus 234 ~a~~~~~~ 241 (587)
+++.+..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99887643
No 99
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=4.4e-17 Score=132.23 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++. ++..|.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 3457789999999999999999 899999999999999997 899999999999999999999964 8889999999998
Q ss_pred ec
Q psy1534 106 EA 107 (587)
Q Consensus 106 ~a 107 (587)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 100
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=138.32 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=72.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC--CceeCCeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH--RFETKGRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~--g~~l~gr~i~V~ 105 (587)
++...+|||+|||+++++++| ++|++||+|++|+|+++ ||||||+|.+.++|++|++.|+ +..|.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457789999999999999999 89999999999999986 7999999999999999999886 478999999999
Q ss_pred ecccccC
Q psy1534 106 EAVEDKG 112 (587)
Q Consensus 106 ~a~~~~~ 112 (587)
++..+..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9985543
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.1e-17 Score=131.74 Aligned_cols=80 Identities=33% Similarity=0.543 Sum_probs=75.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999986 4889999999999999999999999999999999999997
Q ss_pred c
Q psy1534 236 R 236 (587)
Q Consensus 236 ~ 236 (587)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=135.14 Aligned_cols=84 Identities=30% Similarity=0.406 Sum_probs=78.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE-EEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENV-EIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
+.++|||+|||+++++++|+++|++||.|.+| +|++++ .++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 999996 4999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877643
No 103
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.3e-17 Score=134.74 Aligned_cols=85 Identities=25% Similarity=0.469 Sum_probs=78.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++||+ ||+..|.|++|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999975 8999999999999999999998 999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9877643
No 104
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=134.02 Aligned_cols=81 Identities=37% Similarity=0.558 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
...++|||+|||+++++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++|++.||+..+.|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999976
Q ss_pred C
Q psy1534 237 V 237 (587)
Q Consensus 237 ~ 237 (587)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=137.30 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+....+|||+|||+++|+++| ++|++||.| +|+|++|+++++||||||+|.+.++|++|| .+|+..|.+|.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 3456789999999999999999 899999955 999999999999999999999999999999 5799999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88543
No 106
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=136.91 Aligned_cols=85 Identities=31% Similarity=0.493 Sum_probs=79.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 3568999999999999999999999999999999999875 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887644
No 107
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=136.80 Aligned_cols=85 Identities=58% Similarity=0.792 Sum_probs=79.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++||+.||+..|.|+.|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76543
No 108
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=1.8e-17 Score=139.93 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=78.0
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCcee---CCeEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFET---KGRKL 102 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l---~gr~i 102 (587)
..+...+|||+|||.++++++| ++|++||+|.+|+|++|+ +++++|||||+|.+.++|++|++.||+..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999 899999999999999997 899999999999999999999999999988 89999
Q ss_pred EEEeccccc
Q psy1534 103 VIKEAVEDK 111 (587)
Q Consensus 103 ~V~~a~~~~ 111 (587)
+|.++..+.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998554
No 109
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=1.3e-16 Score=136.69 Aligned_cols=86 Identities=23% Similarity=0.352 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|+.||.|..|.|++++ .++++|||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
+..+...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877643
No 110
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=6.4e-17 Score=133.85 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=77.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+++|||+|||.++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..+.|+.|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999975 89999999999999999999999999999999999999987
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 111
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=138.23 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++||+. ++..|.|++|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567789999999999999999 899999999999999996 899999999999999999999998 999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9998554
No 112
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=133.03 Aligned_cols=82 Identities=30% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.++.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred ccC
Q psy1534 235 DRV 237 (587)
Q Consensus 235 a~~ 237 (587)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 113
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=138.95 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
......++|||+|||+++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.|++ .|.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 44557789999999999999999 899999999999999997 899999999999999999999999998 899999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++..+
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 999744
No 114
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=132.52 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=76.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
......+|||+|||+++++++| ++|++| .|.+|+|+++.+|+++|||||+|.+.++|++|++ ||+..|.|++|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456789999999999999999 899999 9999999999999999999999999999999999 999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9854
No 115
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=135.86 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=79.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|.+|.|+++ .++++|||||+|.+.++|++||+.||+..|.|++|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345689999999999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887643
No 116
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.6e-17 Score=141.85 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456679999999999999999 899999999999999996 8999999999999999999999999999999999999
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 117
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=5.8e-18 Score=141.24 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCcEEEcCCCC------CCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCC-eEE
Q psy1534 32 EVPVVMDLIQG------DASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG-RKL 102 (587)
Q Consensus 32 ~~~vfV~nlp~------~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g-r~i 102 (587)
.++|||+|||+ ++++++| ++|++||+|.+|+|++|+ +|++||||||+|.+.++|++|++.||+..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 9999999 899999999999999997 79999999999999999999999999999999 999
Q ss_pred EEEecccc
Q psy1534 103 VIKEAVED 110 (587)
Q Consensus 103 ~V~~a~~~ 110 (587)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999843
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=133.19 Aligned_cols=85 Identities=26% Similarity=0.444 Sum_probs=78.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|.+|+|++++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999999998754 8999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 887643
No 119
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=133.89 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC--C--CcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD--G--KSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g--~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
+.++|||+|||+++++++|+++|++||.|..|.|++++. | +++|||||+|.+.++|++|++.||+..|.|++|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467999999999999999999999999999999998764 4 889999999999999999999999999999999999
Q ss_pred EccCCCCC
Q psy1534 234 MDRVADRL 241 (587)
Q Consensus 234 ~a~~~~~~ 241 (587)
++..+...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99877643
No 120
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-17 Score=138.19 Aligned_cols=85 Identities=27% Similarity=0.469 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
...++|||+|||+++++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy1534 237 VADRL 241 (587)
Q Consensus 237 ~~~~~ 241 (587)
.....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76643
No 121
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=139.25 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=77.9
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeE--------EEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCcee
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVT--------YVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFET 97 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~--------~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l 97 (587)
.....++|||+|||+++++++| ++|++||.|. .|+|++++ +++++|||||+|.+.++|++|++.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3456789999999999999999 8999999999 69999995 999999999999999999999999999999
Q ss_pred CCeEEEEEeccccc
Q psy1534 98 KGRKLVIKEAVEDK 111 (587)
Q Consensus 98 ~gr~i~V~~a~~~~ 111 (587)
.|++|+|.++..+.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998554
No 122
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=136.70 Aligned_cols=86 Identities=27% Similarity=0.392 Sum_probs=79.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|++||+.||+..|.|++|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
++.....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 123
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.4e-17 Score=137.60 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+...+|||+|||+++++++| ++|++||+|.+|++++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 445689999999999999999 899999999999999886 899999999999999999999999999999999999998
Q ss_pred cc
Q psy1534 107 AV 108 (587)
Q Consensus 107 a~ 108 (587)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 124
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-17 Score=135.57 Aligned_cols=85 Identities=27% Similarity=0.469 Sum_probs=79.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||+++++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999999875 889999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
+.+...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 877643
No 125
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=137.37 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=76.8
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+...+|||+|||+++++++| ++|++||+|.+|++++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456788999999999999999 899999999999888886 99999999999999999999999999999999999999
Q ss_pred ecccc
Q psy1534 106 EAVED 110 (587)
Q Consensus 106 ~a~~~ 110 (587)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98743
No 126
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=4.3e-17 Score=133.75 Aligned_cols=83 Identities=20% Similarity=0.431 Sum_probs=76.8
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+...+|||+|||+++++++| ++|++||+|.+|+|+++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457789999999999999999 89999999999999985 888999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98543
No 127
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.2e-17 Score=144.32 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
..++..++|||+|||+++++++| ++|++||+|++|+|++|+ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567789999999999999999 899999999999999997 8999999999999999999999999999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++..+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 999854
No 128
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=134.97 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN--NQNLFERRITVR 233 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~ 233 (587)
.++.++|||+|||++++|++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.|+ +..|.|++|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 455789999999999999999999999999999999986 6999999999999999999886 478999999999
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
+++.+..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9877653
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=133.25 Aligned_cols=81 Identities=32% Similarity=0.468 Sum_probs=76.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.++.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred cc
Q psy1534 235 DR 236 (587)
Q Consensus 235 a~ 236 (587)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 130
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=2.8e-17 Score=143.37 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=78.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+...+|||+|||+++++++| ++|++||+|.+|+|++++ ++.++|||||+|.+.++|++|++.||+..|.|++|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445679999999999999999 899999999999999997 99999999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++..+.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 998554
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=139.32 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=70.7
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
.+|||+|||+++++++| ++|++||+|.+|+|+++ ++|||||+|.+.++|++|++.|++..+.|++|+|.++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 37999999999999999 89999999999999987 78999999999999999999999999999999999998554
No 132
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-16 Score=132.69 Aligned_cols=84 Identities=15% Similarity=0.297 Sum_probs=77.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++++.. ++|||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345689999999999999999999999999999999998654 6899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
+.+..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87653
No 133
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=8.2e-17 Score=145.95 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=79.3
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+...+|||+|||+++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33456789999999999999999 899999999999999997 8999999999999999999999999999999999999
Q ss_pred EecccccC
Q psy1534 105 KEAVEDKG 112 (587)
Q Consensus 105 ~~a~~~~~ 112 (587)
.++.....
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99985443
No 134
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=147.30 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCC--CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVG--DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G--~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
...+|||+|||+++++++| ++|++|| +|.+|+|++|+ +|++||||||+|.+.++|++||+.||+..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 4579999999999999999 8999999 99999999997 999999999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9743
No 135
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=136.12 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCCCCcEEEcCCCC-CCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEE
Q psy1534 29 APLEVPVVMDLIQG-DASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR--FETKGRKLVI 104 (587)
Q Consensus 29 ~~~~~~vfV~nlp~-~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g--~~l~gr~i~V 104 (587)
..+.++|||+|||+ ++++++| ++|++||+|.+|+|+++ ||||||+|++.++|++|++.|++ ..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34678999999999 9999999 89999999999999976 58999999999999999999885 5699999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++.+.+
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998543
No 136
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=136.00 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=79.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhC------CceeCCe
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLN------NQNLFER 228 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~------g~~~~g~ 228 (587)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++||+.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 34568999999999999999999999999999999999985 8999999999999999999999999 9999999
Q ss_pred EEEEEEccCCCCC
Q psy1534 229 RITVRMDRVADRL 241 (587)
Q Consensus 229 ~l~v~~a~~~~~~ 241 (587)
+|+|+++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999877543
No 137
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=134.13 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCce--eCCeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE--TKGRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~--l~gr~i~V~ 105 (587)
.++.++|||+|||+++|+++| ++|++||+|++|+|+++ ||||||+|++.++|++|++.|++.. |.||+|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 456788999999999999999 89999999999999864 7999999999999999999999864 889999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++..++
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998553
No 138
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=6.2e-17 Score=131.87 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=74.6
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|+ .||+..|.|++|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3478999999999999999 899999999999999997 9999999999999999999999 999999999999999987
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 139
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=1.5e-17 Score=135.87 Aligned_cols=81 Identities=16% Similarity=0.337 Sum_probs=71.2
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcC--CeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAG--KVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+|||+|||+++++++|+++|++|| .|.+|+|++++. |+++|||||+|.+.++|++|++.||+..+.|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 999999999984 9999999999999999999999999999999999999988
Q ss_pred CCCC
Q psy1534 237 VADR 240 (587)
Q Consensus 237 ~~~~ 240 (587)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 140
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.1e-17 Score=135.31 Aligned_cols=85 Identities=31% Similarity=0.448 Sum_probs=79.7
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987754
No 141
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=136.05 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=77.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeE-EEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeE----
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVT-YVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK---- 101 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~-~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~---- 101 (587)
....++|||+|||+++++++| ++|++||+|. +|+|++++ +++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 356789999999999999999 8999999999 99999997 9999999999999999999999999999999999
Q ss_pred EEEEecccc
Q psy1534 102 LVIKEAVED 110 (587)
Q Consensus 102 i~V~~a~~~ 110 (587)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998744
No 142
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-17 Score=136.42 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEE-EEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTY-VEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~-v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....+|||+|||+++++++| ++|++||.|.+ |+|+++.+|+++|||||+|.+.++|++||+. ++..|.||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346689999999999999999 89999999998 9999999999999999999999999999987 99999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+.+++
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 88554
No 143
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-17 Score=134.78 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 356789999999999999999 889999999999999996 899999999999999999999999999999999988765
Q ss_pred cc
Q psy1534 107 AV 108 (587)
Q Consensus 107 a~ 108 (587)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 144
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=1.8e-16 Score=134.03 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=77.8
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
...+.++|||+|||+.+++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy1534 235 DR 236 (587)
Q Consensus 235 a~ 236 (587)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 145
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=131.52 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=75.7
Q ss_pred CCcEEEEecCCCCCcHHHHH----HHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLR----EVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..++|||+|||+++++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|++||+.||+..+.|++|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45799999999999999999 99999999999999998766 8899999999999999999999999999999999
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
++++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9977653
No 146
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=134.88 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHh-cCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce-eCCeEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRL-AGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN-LFERRITVR 233 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~-~~g~~l~v~ 233 (587)
..+.++|||+|||+++++++|+++|++ ||.|.+|.|+++++++++|||||+|.+.++|.+||+.||+.. +.|++|.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345689999999999999999999999 999999999999989999999999999999999999999999 999999999
Q ss_pred EccCCCCC
Q psy1534 234 MDRVADRL 241 (587)
Q Consensus 234 ~a~~~~~~ 241 (587)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99776543
No 147
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=1.5e-17 Score=130.86 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=69.9
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++ |++..|.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 6999999999999999 899999999999999997 89999999999999999999997 8999999999999875
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.2e-17 Score=140.34 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=76.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCC---eEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGD---VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~---V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.....+|||+|||+++|+++| ++|++||. |.+|+|+++++|++||||||+|.+.++|++||+ ||+..|.||.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456688999999999999999 89999999 899999999889999999999999999999998 8999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998443
No 149
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=134.82 Aligned_cols=86 Identities=23% Similarity=0.502 Sum_probs=79.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeC-C-CCCcceEEEEEecCHHHHHHHHHHh-CCceeCCeEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALD-K-DGKSRGFGTVEFDHPVEAVQSISML-NNQNLFERRITV 232 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v 232 (587)
....++|||+|||+.+++++|+++|++||.|..|.|+++ + .++++|||||+|.+.++|++||+.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345689999999999999999999999999999999998 4 5999999999999999999999999 999999999999
Q ss_pred EEccCCCCC
Q psy1534 233 RMDRVADRL 241 (587)
Q Consensus 233 ~~a~~~~~~ 241 (587)
+++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999887543
No 150
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=1e-16 Score=135.23 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCcee---CCeEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNL---FERRIT 231 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~ 231 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..+ .+++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999988 899999
Q ss_pred EEEccCCCCC
Q psy1534 232 VRMDRVADRL 241 (587)
Q Consensus 232 v~~a~~~~~~ 241 (587)
|+++..+.+.
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999877643
No 151
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.3e-16 Score=126.28 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+.++.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999976 58999999999999999999999999999999999983
No 152
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-16 Score=134.78 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|++||+.|++ .|.|++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34568999999999999999999999999999999999975 99999999999999999999999998 89999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
+....+
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 977653
No 153
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=134.62 Aligned_cols=83 Identities=25% Similarity=0.381 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..|.|++|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4468999999999999999999999999999999999986 999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 154
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=135.17 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
......++|||+|||+++++++| ++|++||+|++|+|+.+ +.++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456789999999999999999 89999999999999654 5578999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++..++
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998554
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=132.26 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCC-cceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGK-PRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~-skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...+|||+|||+++++++| ++|++||+|.+|+|++++ ++. ++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 5689999999999999999 899999999999999987 444 8999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
.++
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 744
No 156
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=131.40 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce--eCCeEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN--LFERRITV 232 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~v 232 (587)
..+++++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3456889999999999999999999999999999999864 7899999999999999999999875 78999999
Q ss_pred EEccCCC
Q psy1534 233 RMDRVAD 239 (587)
Q Consensus 233 ~~a~~~~ 239 (587)
.+++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997654
No 157
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=132.86 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=77.1
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE--------EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVEN--------VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNL 225 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 225 (587)
..++.++|||+|||+++++++|+++|++||.|.+ |+|++++. ++++|||||+|.+.++|++|++.||+..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4556789999999999999999999999999999 99999975 99999999999999999999999999999
Q ss_pred CCeEEEEEEcc
Q psy1534 226 FERRITVRMDR 236 (587)
Q Consensus 226 ~g~~l~v~~a~ 236 (587)
.|++|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 158
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=131.15 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh--CCceeCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKM--HRFETKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l--~g~~l~gr~i~V 104 (587)
..++.++|||+|||+++++++| ++|++||+|.+|+|+++ ||||||+|.+.++|++|++.| ++..|.|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999 89999999999999875 799999999999999999977 468899999999
Q ss_pred EecccccC
Q psy1534 105 KEAVEDKG 112 (587)
Q Consensus 105 ~~a~~~~~ 112 (587)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99985543
No 159
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.2e-16 Score=132.46 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=77.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|++|| |.+|.|++++. ++++|||||+|.+.++|++|| .||+..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999996 99999999985 999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 160
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=135.71 Aligned_cols=85 Identities=24% Similarity=0.477 Sum_probs=79.2
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..+..++|||+|||+.+++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..|.|++|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455678999999999999999999999999999999999975 8999999999999999999999999999999999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 987653
No 161
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-16 Score=131.73 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=75.8
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.......+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++ ++..|.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34456789999999999999999 899999999999999996 89999999999999999999998 478999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998553
No 162
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3.6e-17 Score=143.65 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=75.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCC---eEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGD---VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~---V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.....+|||+|||+++|+++| ++|++||. |.+|+|++|++|++||||||+|.+.++|++||+ ||+..|.||+|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 446678999999999999999 89999999 899999999889999999999999999999998 9999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++.++
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998744
No 163
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=9.7e-17 Score=136.02 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
......++|||+|||+++++++| ++|++||+|.+|+|++++ +|+++|||||+|.+.++|++|++.+ +..|.|++|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34457789999999999999999 899999999999999997 8999999999999999999999886 59999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998543
No 164
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4e-17 Score=139.65 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=76.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCe-EEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDV-TYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V-~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
....++|||+|||+++++++| ++|++||.| .+|+|++|++|+++|||||+|.+.++|++||+. |+..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 456789999999999999999 899999999 899999999999999999999999999999987 99999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98443
No 165
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=128.74 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=76.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|+.| .|.+|.|+++.+|+++|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3446899999999999999999999999 9999999999779999999999999999999999 9999999999999998
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7764
No 166
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=138.98 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=78.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
......+|||+|||+++++++| ++|++||+|++|+|+++++|+++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3455679999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98543
No 167
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.4e-17 Score=137.17 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
......++|||+|||.++++++| ++|++||+|.+|+|++++. .++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44457789999999999999999 8999999999999999864 489999999999999999999999999999999999
Q ss_pred ecccc
Q psy1534 106 EAVED 110 (587)
Q Consensus 106 ~a~~~ 110 (587)
++..+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98744
No 168
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=132.83 Aligned_cols=84 Identities=18% Similarity=0.301 Sum_probs=78.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCee-EEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVE-NVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR---- 229 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~---- 229 (587)
..+.++|||+|||+++++++|+++|++||.|. +|+|++++. ++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 999999984 999999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q psy1534 230 ITVRMDRVAD 239 (587)
Q Consensus 230 l~v~~a~~~~ 239 (587)
|+|.++++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987664
No 169
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=133.70 Aligned_cols=83 Identities=27% Similarity=0.450 Sum_probs=77.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.+.++|||+|||+++++++|+++|++|| |.+|.|++++. ++++|||||+|.+.++|++|| .||+..|.|++|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4468999999999999999999999999 99999999985 899999999999999999999 9999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887644
No 170
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-17 Score=138.86 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=76.4
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||+++++++| ++|++||+|.+|+|++++ +|+++|||||+|.+.++|++|++.||+..|.|++|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 5579999999999999999 899999999999999996 89999999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
.+.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 171
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=128.99 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=75.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..+.|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 57999999999999999999999999999999999885 3489999999999999999999999999999999999987
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=2e-16 Score=129.74 Aligned_cols=83 Identities=35% Similarity=0.557 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+.++|||+|||+++++++|+++|++||.|..|.|+++ .++++|||||+|.+.++|++|++.||+..+.|++|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45689999999999999999999999999999999984 68899999999999999999999999999999999999998
Q ss_pred CCCC
Q psy1534 237 VADR 240 (587)
Q Consensus 237 ~~~~ 240 (587)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 173
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=132.45 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=74.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....++|||+|||+++++++| ++|++||+| +|+++.+++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4457789999999999999999 899999987 677778899999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98554
No 174
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-16 Score=138.82 Aligned_cols=87 Identities=30% Similarity=0.517 Sum_probs=80.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
.....++|||+|||+++++++|+++|+.||.|.+|+|++++. ++++|||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445678999999999999999999999999999999999985 8999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q psy1534 234 MDRVADRL 241 (587)
Q Consensus 234 ~a~~~~~~ 241 (587)
+++.+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887643
No 175
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=2e-16 Score=134.35 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=78.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+.+++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|+..||+..|.|++|.|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999874 99999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy1534 235 DRVAD 239 (587)
Q Consensus 235 a~~~~ 239 (587)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98765
No 176
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.2e-17 Score=135.42 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|||+|||+++|+++|+++|++||.|.+|.|++++.++++|||||+|.+.++|.+||. +++..+.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 3579999999999999999999999999999999999889999999999999999999998 899999999999998755
No 177
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7e-17 Score=138.64 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++||+. ++..|.|++|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34578999999999999999 899999999999999996 899999999999999999999987 999999999999999
Q ss_pred cccc
Q psy1534 108 VEDK 111 (587)
Q Consensus 108 ~~~~ 111 (587)
..+.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8554
No 178
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=4.2e-17 Score=135.99 Aligned_cols=81 Identities=27% Similarity=0.329 Sum_probs=77.1
Q ss_pred CcEEEEecCCC------CCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCC-eEE
Q psy1534 159 INKVFVANLDY------KVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE-RRI 230 (587)
Q Consensus 159 ~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~l 230 (587)
.++|||+|||+ ++++++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|++||+.|||..+.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57999999999 999999999999999999999999986 9999999999999999999999999999999 999
Q ss_pred EEEEccCCC
Q psy1534 231 TVRMDRVAD 239 (587)
Q Consensus 231 ~v~~a~~~~ 239 (587)
+|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999987653
No 179
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=134.21 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=74.8
Q ss_pred CCCCcEEEcCCCCCCCHHHH----HhcccCCCeEEEEEeeCC-CC---CcceEEEEEECCHHHHHHHHHHhCCceeCCeE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI----SHLSTVGDVTYVEILNDD-TG---KPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l----~~F~~~G~V~~v~i~~d~-~g---~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~ 101 (587)
....+|||+|||+++++++| ++|++||+|.+|+|++++ ++ +++|||||+|.+.++|++|++.||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 45689999999999999998 679999999999999986 43 56699999999999999999999999999999
Q ss_pred EEEEeccccc
Q psy1534 102 LVIKEAVEDK 111 (587)
Q Consensus 102 i~V~~a~~~~ 111 (587)
|+|.++..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998664
No 180
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=131.55 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCCCcEEEcCCCCCCCHHHH-----HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-----SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-----~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
....+|||+|||+++++++| ++|++||+|.+|+|++|+.. ||||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35678999999999999998 57999999999999999754 899999999999999999999999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999744
No 181
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=133.07 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEE
Q psy1534 156 CPLINKVFVANLDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN--QNLFERRITV 232 (587)
Q Consensus 156 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v 232 (587)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+||+.||+ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34578999999999 9999999999999999999999876 58999999999999999999886 4599999999
Q ss_pred EEccCCC
Q psy1534 233 RMDRVAD 239 (587)
Q Consensus 233 ~~a~~~~ 239 (587)
.+++...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 182
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=4.1e-16 Score=135.53 Aligned_cols=86 Identities=22% Similarity=0.410 Sum_probs=80.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|.+|.|+++++++++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
......
T Consensus 112 ~~~~~~ 117 (124)
T 2kt5_A 112 ASQIDL 117 (124)
T ss_dssp CCTTCC
T ss_pred CCCCCC
Confidence 876543
No 183
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=3.3e-16 Score=127.54 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=75.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|++||.|.+|.+++++ +++++|||||+|.+.++|++|+ .||+..+.|++|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4699999999999999999999999999999999997 4999999999999999999999 9999999999999999876
Q ss_pred C
Q psy1534 238 A 238 (587)
Q Consensus 238 ~ 238 (587)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 184
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=134.59 Aligned_cols=85 Identities=24% Similarity=0.415 Sum_probs=78.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCee--------EEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVE--------NVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
....++|||+|||+++++++|+++|++||.|. .|+|++++ +++++|||||+|.+.++|++||+.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999998 69999996 4999999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q psy1534 227 ERRITVRMDRVADR 240 (587)
Q Consensus 227 g~~l~v~~a~~~~~ 240 (587)
|++|+|++++.+..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987654
No 185
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.5e-16 Score=137.08 Aligned_cols=82 Identities=26% Similarity=0.418 Sum_probs=76.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..+..++|||+|||+++++++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|++|++.||+..|.|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999975 8999999999999999999999999999999999999
Q ss_pred Ecc
Q psy1534 234 MDR 236 (587)
Q Consensus 234 ~a~ 236 (587)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 186
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-16 Score=132.27 Aligned_cols=70 Identities=31% Similarity=0.603 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccC-----ceEEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDG-----KIIDVTF 586 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g-----~~i~v~~ 586 (587)
.++|||.|||+++|++||+++|++||.|..++|..+ ++|||+|++.++|++||+.||+.+|.| ++|+|.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 689999999999999999999999999999999888 999999999999999999999999999 9999975
No 187
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=134.63 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=75.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCcee--------CC
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET--------KG 99 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l--------~g 99 (587)
.....+|||+|||+++++++| ++|++||+|.+|+|+++++++++|||||+|.+.++|++|++.||+..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356789999999999999999 899999999999999999999999999999999999999999999999 57
Q ss_pred eEEEEEeccc
Q psy1534 100 RKLVIKEAVE 109 (587)
Q Consensus 100 r~i~V~~a~~ 109 (587)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999873
No 188
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=133.02 Aligned_cols=84 Identities=30% Similarity=0.410 Sum_probs=78.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++||+. |+..|.|+.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34568999999999999999999999999999999999975 99999999999999999999998 99999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887654
No 189
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-17 Score=129.26 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=70.8
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
.+|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999 899999999999999997 89999999999999999999999998 9999999999986
No 190
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=136.55 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=74.0
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
.++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|+ .||+..|.|++|+|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 458999999999999999 899999999999999997 7999999999999999999999 9999999999999999984
Q ss_pred c
Q psy1534 110 D 110 (587)
Q Consensus 110 ~ 110 (587)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 191
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=133.94 Aligned_cols=77 Identities=23% Similarity=0.313 Sum_probs=72.5
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
..+|||+|||+++++++| ++|++| .|.+|+|++|++|+++|||||+|.+.++|++|| .+|+..|.||.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 458999999999999999 899999 899999999989999999999999999999999 68999999999999988744
No 192
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=4.5e-16 Score=126.16 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++. ++..+.|++|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999975 99999999999999999999954 88899999999987
Q ss_pred c
Q psy1534 235 D 235 (587)
Q Consensus 235 a 235 (587)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 193
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=136.31 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR--FETKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g--~~l~gr~i~V 104 (587)
..++.++|||+|||+++++++| ++|++||+|++|+|+++ ||||||+|++.++|++|++.|++ ..|.|++|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3456778999999999999999 89999999999999986 79999999999999999998874 6899999999
Q ss_pred EecccccC
Q psy1534 105 KEAVEDKG 112 (587)
Q Consensus 105 ~~a~~~~~ 112 (587)
.++..+..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99986543
No 194
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=1.4e-16 Score=139.26 Aligned_cols=85 Identities=31% Similarity=0.350 Sum_probs=79.2
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..++.++|||+|||+++++++|+++|++||.|..|+|++++. ++++|||||+|.+.++|++||+.||+..|.|++|.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345578999999999999999999999999999999999975 8999999999999999999999999999999999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987754
No 195
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=3.4e-16 Score=140.92 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=68.1
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC-CCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK-GDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~-~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.++|||.|||+++|+++|+++|++||.|..+++..+ +|+|||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 469999999999999999999999999999999876 89999999999999999999999999999999986
No 196
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=131.29 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=75.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|..|.|..+ ++++|||||+|.+.++|++||+.||+..|.|++|+|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345689999999999999999999999999999999664 457999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
+...+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 197
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=132.32 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR--FETKGRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g--~~l~gr~i~V~ 105 (587)
.++.++|||+|||+++++++| ++|++||+|.+|+|+++ ||||||+|.+.++|++|++.|++ ..|.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 356689999999999999999 89999999999999874 79999999999999999998865 45999999999
Q ss_pred ecccccC
Q psy1534 106 EAVEDKG 112 (587)
Q Consensus 106 ~a~~~~~ 112 (587)
++..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9986543
No 198
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=133.38 Aligned_cols=83 Identities=27% Similarity=0.462 Sum_probs=77.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.....++|||+|||.++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|++|++.||+..+.|++|+|++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred ccCC
Q psy1534 235 DRVA 238 (587)
Q Consensus 235 a~~~ 238 (587)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 199
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=129.05 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh--CCceeCCeEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML--NNQNLFERRITV 232 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l--~g~~~~g~~l~v 232 (587)
..+++++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.| ++..+.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999999875 799999999999999999977 567899999999
Q ss_pred EEccCCCC
Q psy1534 233 RMDRVADR 240 (587)
Q Consensus 233 ~~a~~~~~ 240 (587)
.+++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987653
No 200
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.8e-16 Score=128.75 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=77.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|++||+ +++.|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 34568999999999999999999999999999999999975 9999999999999999999998 57899999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887644
No 201
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=3.8e-16 Score=123.58 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=68.3
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
..-|+|+||++.+|+++|+++|.+||+|..+.+..++|+|||+|.++++|++||+.||+.++.||.|+|.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 45999999999999999999999999999999998899999999999999999999999999999999974
No 202
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=8.3e-17 Score=169.59 Aligned_cols=84 Identities=25% Similarity=0.517 Sum_probs=78.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999997 4999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87654
No 203
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=134.41 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCcEEEcCCCCCC------CHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCe-EE
Q psy1534 31 LEVPVVMDLIQGDA------SLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR-KL 102 (587)
Q Consensus 31 ~~~~vfV~nlp~~~------t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr-~i 102 (587)
..++|||+|||+++ ++++| ++|++||+|.+|+|+ ..+|+++|||||+|.+.++|++|++.|||..|.|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46789999999999 77888 899999999999998 46899999999999999999999999999999998 99
Q ss_pred EEEeccc
Q psy1534 103 VIKEAVE 109 (587)
Q Consensus 103 ~V~~a~~ 109 (587)
+|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999873
No 204
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=3.3e-16 Score=132.70 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=75.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
.....++|||+|||+++++++|+++|+.||.|.+|.|++++. ++++|||||+|.+.++|++||+.+ +..+.|+.|.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 344578999999999999999999999999999999999985 999999999999999999999886 599999999999
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 205
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-17 Score=142.93 Aligned_cols=82 Identities=12% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEE--EEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCc----eeCC
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTY--VEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRF----ETKG 99 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~--v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~----~l~g 99 (587)
.....++|||+|||+++++++| ++|++||+|.. |+|++|+ +|++||||||+|.+. +|.+|++.||+. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456779999999999999999 89999999977 9999998 999999999999999 999999999999 9999
Q ss_pred eEEEEEecccc
Q psy1534 100 RKLVIKEAVED 110 (587)
Q Consensus 100 r~i~V~~a~~~ 110 (587)
++|+|.++..+
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999854
No 206
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=131.53 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
+..++|||+|||+++++++|+++|++||.|..+.+++++. ++++|||||+|.+.++|++||+.||+..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3467999999999999999999999999999888887764 899999999999999999999999999999999999998
Q ss_pred cCC
Q psy1534 236 RVA 238 (587)
Q Consensus 236 ~~~ 238 (587)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 207
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.5e-16 Score=129.71 Aligned_cols=78 Identities=26% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC-----eEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE-----RRITV 232 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-----~~l~v 232 (587)
..++|||+|||+++++++|+++|++||.|..|.|+++ |||||+|.+.++|++||+.||+..|.| ++|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4679999999999999999999999999999999886 899999999999999999999999999 99999
Q ss_pred EEccCCCCC
Q psy1534 233 RMDRVADRL 241 (587)
Q Consensus 233 ~~a~~~~~~ 241 (587)
+++.++.+.
T Consensus 88 ~~a~~~~~~ 96 (108)
T 1x4c_A 88 KVDGPRSPS 96 (108)
T ss_dssp EESSCCSCC
T ss_pred EeCCCCCCC
Confidence 999886643
No 208
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=141.46 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcC--CeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAG--KVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..++|||+|||+++++++|+++|+.|| .|.+|+|++|+. |+++|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999975 99999999999999999999999999999999999999
Q ss_pred ccCC
Q psy1534 235 DRVA 238 (587)
Q Consensus 235 a~~~ 238 (587)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 209
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-17 Score=134.67 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC--CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD--TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~--~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
....++|||+|||+++++++| ++|++|| |.+|+|++++ +|+++|||||+|.+.++|++|+ .|++..|.|++|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 456789999999999999999 8999999 9999999996 8999999999999999999999 899999999999999
Q ss_pred ecccc
Q psy1534 106 EAVED 110 (587)
Q Consensus 106 ~a~~~ 110 (587)
++..+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98743
No 210
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=127.97 Aligned_cols=77 Identities=16% Similarity=0.324 Sum_probs=71.4
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+..++|||+|||+++++++| ++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457789999999999999999 899999999999998 48999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98554
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.1e-16 Score=135.36 Aligned_cols=81 Identities=12% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCC-CeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVG-DVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G-~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
..++...+|||+|||+++++++| ++|++|| +|..|+|+.+ .++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44556789999999999999999 8999999 9999998643 47899999999999999999999999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998743
No 212
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.8e-17 Score=140.92 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeC-CCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILND-DTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d-~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
.......+|||+|||+++++++| ++|++||.|.+|.++.+ .+|+++|||||+|.+.++|++||+ ||+..|.|++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34456689999999999999999 89999999999555555 599999999999999999999998 9999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++.++
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999854
No 213
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=133.33 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN--QNLFERRITV 232 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v 232 (587)
..+++++|||+|||++++|++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3456789999999999999999999999999999999986 79999999999999999998874 6899999999
Q ss_pred EEccCCCC
Q psy1534 233 RMDRVADR 240 (587)
Q Consensus 233 ~~a~~~~~ 240 (587)
.+++.+..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99987653
No 214
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=9.4e-16 Score=138.95 Aligned_cols=85 Identities=24% Similarity=0.369 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|++||+.||+..|.|++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
+++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987653
No 215
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=131.56 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
...++|||+|||+++++++|+++|++|| +++|+|+++++++++|||||+|.+.++|++|| .+|++.|.+|.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 3467999999999999999999999999 45999999999999999999999999999999 579999999999999887
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 216
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.5e-16 Score=131.37 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
+.++|||+|||+++++++|+++|++||.|..+.+++++. ++++|||||+|.+.++|++||+.||+..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457999999999999999999999999999888888765 8999999999999999999999999999999999999875
Q ss_pred C
Q psy1534 237 V 237 (587)
Q Consensus 237 ~ 237 (587)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 217
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=139.55 Aligned_cols=80 Identities=25% Similarity=0.298 Sum_probs=74.6
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+..++|||+|||.++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999 899999999999999996 89999999999999999999999999999999999998
Q ss_pred ec
Q psy1534 106 EA 107 (587)
Q Consensus 106 ~a 107 (587)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 218
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=4.1e-17 Score=133.29 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=71.7
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecccc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~ 110 (587)
++|||+|||.++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.+ |++|++.||+..+.|++|+|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999 899999999999999997 8999999999999999 99999999999999999999999854
No 219
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.5e-16 Score=128.29 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
..+..++|||+|||+++++++| ++|+.| .+|++++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3457789999999999999999 889987 378888886 99999999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++..+.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998654
No 220
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=3.9e-16 Score=136.11 Aligned_cols=86 Identities=24% Similarity=0.357 Sum_probs=80.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4457899999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877643
No 221
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=129.26 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+.++|||+|||+++++++|+++|++||.| +++++..++++|||||+|.+.++|++||+.||+..|.|++|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999976 67777678999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy1534 237 VADR 240 (587)
Q Consensus 237 ~~~~ 240 (587)
++.+
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 222
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.4e-17 Score=138.72 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=74.0
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCe----EEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDV----TYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V----~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
....+|||+|||+++|+++| ++|++||+| .+|+|++|++|++||||||+|.+.++|++||+. |+..|.+|.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45689999999999999999 899999986 699999999999999999999999999999986 999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998744
No 223
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=131.00 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCC-eeEEEEe-eCCC-CCcceEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGK-VENVEIA-LDKD-GKSRGFGTVEFDHPVEAVQSISMLN--NQNLFERRIT 231 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~-g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~ 231 (587)
.+.++|||+|||+++++++|+++|++||. |.+|.|+ +++. ++++|||||+|.+.++|++|++.|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34689999999999999999999999998 9999998 6664 8999999999999999999999996 5899999999
Q ss_pred EEEccCCCCC
Q psy1534 232 VRMDRVADRL 241 (587)
Q Consensus 232 v~~a~~~~~~ 241 (587)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887643
No 224
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=132.21 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCCCCcEEEcCCCCC-CCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC--CceeCCeEEEE
Q psy1534 29 APLEVPVVMDLIQGD-ASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH--RFETKGRKLVI 104 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~-~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~--g~~l~gr~i~V 104 (587)
.++.++|||+|||++ +++++| ++|++||+|.+|+|++ +||||||+|.+.++|++|++.|+ +..|.||+|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999998 999999 8999999999999985 47999999999999999999886 46699999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++.++.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9998554
No 225
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=4.2e-16 Score=135.44 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
..++|||+|||+++++++| ++|++||+|.+|+|++++ +++++|||||+|.+.++|++|+ .||+..|.|++|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3568999999999999999 899999999999999996 9999999999999999999999 899999999999999988
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 226
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-17 Score=137.19 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCC---eEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGD---VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~---V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i 102 (587)
.......+|||+|||+++|+++| ++|+.||. |.+|+|++|+.|+++|||||+|.+.++|++||+ +|+..|.||.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34457789999999999999999 89999998 999999999889999999999999999999998 89999999999
Q ss_pred EEEecccc
Q psy1534 103 VIKEAVED 110 (587)
Q Consensus 103 ~V~~a~~~ 110 (587)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998844
No 227
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-17 Score=129.00 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=66.2
Q ss_pred CcEEEcCCCCCC------CHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCe-EEEE
Q psy1534 33 VPVVMDLIQGDA------SLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGR-KLVI 104 (587)
Q Consensus 33 ~~vfV~nlp~~~------t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr-~i~V 104 (587)
++|||+|||+++ ++++| ++|++||+|.+|+|+ ..+|+++|||||+|.+.++|++|++.|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 67888 899999999999988 45899999999999999999999999999999999 8876
No 228
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-16 Score=132.79 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCCCCcHHHHH---HHHHhcCCeeEEEEeeCCC----CCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy1534 157 PLINKVFVANLDYKVDEKKLR---EVFRLAGKVENVEIALDKD----GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 229 (587)
...++|||+|||+++++++|+ ++|++||.|.+|.|++++. ++++|||||+|.+.++|++||+.||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 9999999999999998874 356799999999999999999999999999999
Q ss_pred EEEEEccCCC
Q psy1534 230 ITVRMDRVAD 239 (587)
Q Consensus 230 l~v~~a~~~~ 239 (587)
|+|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 229
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=3.6e-16 Score=134.50 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCC---eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGK---VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
...++|||+|||+++++++|+++|+.||. |..|+|++++.|+++|||||+|.+.++|++||+ ||++.|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34679999999999999999999999999 899999999889999999999999999999998 89999999999999
Q ss_pred EccCC
Q psy1534 234 MDRVA 238 (587)
Q Consensus 234 ~a~~~ 238 (587)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 230
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=2.1e-16 Score=138.84 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCC---eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGK---VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
...++|||+|||+++|+++|+++|++||. |.+|+|++++.|+++|||||+|.+.++|++||+ ||+..|.||.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34679999999999999999999999999 899999999889999999999999999999998 99999999999999
Q ss_pred EccCC
Q psy1534 234 MDRVA 238 (587)
Q Consensus 234 ~a~~~ 238 (587)
++..+
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 97544
No 231
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=131.45 Aligned_cols=81 Identities=26% Similarity=0.545 Sum_probs=77.1
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++|++.||+..+.|+.|+|+++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4799999999999999999999999999999999997 489999999999999999999999999999999999999887
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
+.
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 232
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=128.84 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
...+..++|||+|||+++++++| ++|++||+|.+|+|+++ ||||||+|.+.++|++|++.||+..|.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 33457789999999999999999 89999999999999865 7999999999999999999999999999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998654
No 233
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.3e-17 Score=143.19 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=78.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEE--------EEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeC
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTY--------VEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETK 98 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~--------v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~ 98 (587)
.+..++|||+|||+++++++| ++|++||+|.+ |+|++++ +++++|||||+|.+.++|++|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999 89999999999 9999996 8999999999999999999999999999999
Q ss_pred CeEEEEEecccccC
Q psy1534 99 GRKLVIKEAVEDKG 112 (587)
Q Consensus 99 gr~i~V~~a~~~~~ 112 (587)
|++|+|.++.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986543
No 234
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=129.57 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCc--eeCCeEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQ--NLFERRITVR 233 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~v~ 233 (587)
.++.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++. .+.|++|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 445789999999999999999999999999999999874 789999999999999999988654 5899999999
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
+++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987653
No 235
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=125.22 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh-CCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKM-HRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l-~g~~l~gr~i~V 104 (587)
...+..++|||+|||.++++++| ++|++||+|.+|+++++ ||||||+|.+.++|++|++.| ++..+.|++|+|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 44567789999999999999999 89999999999999974 799999999999999999999 999999999999
Q ss_pred Eecc
Q psy1534 105 KEAV 108 (587)
Q Consensus 105 ~~a~ 108 (587)
.++.
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 236
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=4.5e-16 Score=141.39 Aligned_cols=82 Identities=23% Similarity=0.208 Sum_probs=77.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....+|||+|||+++++++| ++|++||+|.+|+|++|+ +|+++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345679999999999999999 899999999999999996 999999999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+..+
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9854
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=133.95 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=75.1
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCC-eEEEEEe-eCC-CCCcceEEEEEECCHHHHHHHHHHhC--CceeCCeEEE
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGD-VTYVEIL-NDD-TGKPRGSAIVEFQSPDLVRKAVNKMH--RFETKGRKLV 103 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~-V~~v~i~-~d~-~g~skG~aFV~F~~~e~A~~Al~~l~--g~~l~gr~i~ 103 (587)
...++|||+|||+++++++| ++|++||+ |.+|+|+ +++ +++++|||||+|.+.++|++|++.|+ +..|.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999 89999998 9999998 666 88999999999999999999999996 5999999999
Q ss_pred EEeccccc
Q psy1534 104 IKEAVEDK 111 (587)
Q Consensus 104 V~~a~~~~ 111 (587)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998543
No 238
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=2e-16 Score=124.43 Aligned_cols=74 Identities=22% Similarity=0.433 Sum_probs=70.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 161 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
+|||+|||+++++++|+++|++||.|.+|.+++++. ++++|||||+|.+.++|++|++ ||+..+.|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999999984 9999999999999999999997 8999999999999875
No 239
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=6.6e-16 Score=141.29 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=75.7
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+|||+|||+++++++| ++|++||+|.+|+|++++ +|.++|||||+|.+.++|++||+.||+..|.|++|.|.++.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4457999999999999999 899999999999999996 99999999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
.+.
T Consensus 151 ~~~ 153 (165)
T 1rk8_A 151 VKG 153 (165)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 240
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=134.22 Aligned_cols=83 Identities=12% Similarity=0.232 Sum_probs=74.8
Q ss_pred CCCCCcEEEEecCCCCCcHHHHH----HHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLR----EVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRI 230 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 230 (587)
..++.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 34567899999999999999876 6999999999988754 57889999999999999999999999999999999
Q ss_pred EEEEccCCC
Q psy1534 231 TVRMDRVAD 239 (587)
Q Consensus 231 ~v~~a~~~~ 239 (587)
+|.+++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999988764
No 241
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=5.3e-16 Score=131.13 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcC-CeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAG-KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.+..++|||+|||+++++++|+++|++|| .|..+.|..+ +++|||||+|.+.++|++||+.|||..|.|++|+|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44568999999999999999999999999 8999988643 4789999999999999999999999999999999999
Q ss_pred ccCC
Q psy1534 235 DRVA 238 (587)
Q Consensus 235 a~~~ 238 (587)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 242
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=9.9e-17 Score=141.42 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+..++|||+|||+++++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.||+..|.|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33445678999999999999999 899999999999999997 8999999999999999999999999999999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998543
No 243
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9e-17 Score=129.74 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=73.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+.++|||+|||+++++++|+++|++||.|.+|.|++++. ++++|||||+|.+.++|++|++.||+..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3468999999999999999999999999999999999975 999999999999999999999999999999998877654
No 244
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.1e-16 Score=131.55 Aligned_cols=82 Identities=20% Similarity=0.348 Sum_probs=76.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--------CCe
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--------FER 228 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--------~g~ 228 (587)
...++|||+|||+++++++|+++|++||.|.+|+|+++++++++|||||+|.+.++|++|++.||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 446899999999999999999999999999999999998899999999999999999999999999999 588
Q ss_pred EEEEEEccCC
Q psy1534 229 RITVRMDRVA 238 (587)
Q Consensus 229 ~l~v~~a~~~ 238 (587)
+|.|+|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 245
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=135.96 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-----HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-----SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-----~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
.++..+|||+|||+++++++| ++|++||+|.+|.+. .++++||||||+|.+.++|++|++.|||..|.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345678999999999999986 479999999998875 3688999999999999999999999999999999999
Q ss_pred EEecccc
Q psy1534 104 IKEAVED 110 (587)
Q Consensus 104 V~~a~~~ 110 (587)
|.++..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999844
No 246
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=129.72 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCCC------cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe-E
Q psy1534 157 PLINKVFVANLDYKV------DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER-R 229 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~ 229 (587)
...++|||+|||+.+ ++++|+++|++||.|.+|.|+ ..+|+++|||||+|.+.++|.+||+.|||..|.|+ +
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 889999999999999999998 34689999999999999999999999999999998 9
Q ss_pred EEEEEccCCC
Q psy1534 230 ITVRMDRVAD 239 (587)
Q Consensus 230 l~v~~a~~~~ 239 (587)
|+|+++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987654
No 247
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=130.20 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=73.1
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
.++|||+|||+++++++|+++|+.| .|.+|.|+++++|+++|||||+|.+.++|++|| .+|++.|.||.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4699999999999999999999999 899999999988999999999999999999999 68999999999999887543
No 248
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=132.75 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC--CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK--DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
.....++|||+|||+++++++|+++|+.|| |.+|.|++++ .++++|||||+|.+.++|.+|| .||+..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345578999999999999999999999999 9999999997 4999999999999999999999 89999999999999
Q ss_pred EEccCCC
Q psy1534 233 RMDRVAD 239 (587)
Q Consensus 233 ~~a~~~~ 239 (587)
++++.+.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9987654
No 249
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6e-16 Score=129.96 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=75.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE-EEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVEN-VEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...++|||+|||+++++++|+++|++||.|.+ |.|+++.+++++|||||+|.+.++|++||+. |+..+.||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34679999999999999999999999999987 8899987799999999999999999999987 999999999999988
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
..+.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6554
No 250
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9e-16 Score=131.67 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=77.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|++||.|..|.|++++. ++++|||||+|.+.++|++||+. ++..|.|+.|.|+++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 57999999999999999999999999999999999975 99999999999999999999988 99999999999999987
Q ss_pred CCCC
Q psy1534 238 ADRL 241 (587)
Q Consensus 238 ~~~~ 241 (587)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7643
No 251
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=124.32 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..+.++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3456899999999999999999999999999999997 579999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
+++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 877643
No 252
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=134.11 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCe-eEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKV-ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...++|||+|||+++++++|+++|+.||.| ..|+|+++++++++|||||+|.+.++|++||+. |+..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 346799999999999999999999999999 899999999999999999999999999999987 999999999999998
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
..+.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 253
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=8e-17 Score=126.68 Aligned_cols=73 Identities=25% Similarity=0.327 Sum_probs=69.1
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
+|||+|||+++++++| ++|++||+|.+|++++++ +++++|||||+|.+.++|++|++. ++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999999999999 899999999999999996 899999999999999999999975 899999999999875
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=128.59 Aligned_cols=82 Identities=13% Similarity=0.309 Sum_probs=75.6
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.....++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3445789999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
++++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9887643
No 255
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.6e-16 Score=131.75 Aligned_cols=80 Identities=26% Similarity=0.354 Sum_probs=74.9
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...++|||+|||+++++++| ++|++||+|.+|+|+++++++++|||||+|.+.++|++|++ ++..|.|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45679999999999999999 89999999999999999999999999999999999999997 9999999999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 553
No 256
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.5e-16 Score=129.97 Aligned_cols=80 Identities=30% Similarity=0.548 Sum_probs=72.7
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
++|||+|||+++++++|+++|++||.|.+|.+++++. ++++|||||+|.+.+ |.+|++.||+..+.|++|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999999986 999999999999999 99999999999999999999999876
Q ss_pred CC
Q psy1534 239 DR 240 (587)
Q Consensus 239 ~~ 240 (587)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 257
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=132.73 Aligned_cols=80 Identities=28% Similarity=0.425 Sum_probs=76.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|+.||.|.+|.|++++. ++++|||||+|.+.++|++|| .||+..|.|+.|.|+++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 57999999999999999999999999999999999986 899999999999999999999 9999999999999999876
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 258
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=124.37 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=71.0
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+..++|||+|||+++++++| ++|++||+|.+|+|++ +||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3456789999999999999999 8999999999999985 4999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98554
No 259
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-16 Score=131.44 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=69.9
Q ss_pred CcEEEcCC----CCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECC----HHH----HHHHHH--HhCCce
Q psy1534 33 VPVVMDLI----QGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQS----PDL----VRKAVN--KMHRFE 96 (587)
Q Consensus 33 ~~vfV~nl----p~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~----~e~----A~~Al~--~l~g~~ 96 (587)
.+|||+|| |+.+++++| ++|++||+|.+|+++.|+ ||+++|||||+|.+ +++ |.+|++ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999 899999999999999998 99999999999996 444 899998 789999
Q ss_pred eCCeEEEEEecc
Q psy1534 97 TKGRKLVIKEAV 108 (587)
Q Consensus 97 l~gr~i~V~~a~ 108 (587)
|.|++|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999876
No 260
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-16 Score=138.54 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE--EEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVEN--VEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQ----NLFER 228 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~ 228 (587)
....++|||+|||+++++++|+++|++||.|.. |+|++|+ +++++|||||+|.+. +|.+|++.||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999976 9999999 599999999999999 999999999999 99999
Q ss_pred EEEEEEccCCCC
Q psy1534 229 RITVRMDRVADR 240 (587)
Q Consensus 229 ~l~v~~a~~~~~ 240 (587)
+|.|+++++..+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987653
No 261
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=2.2e-16 Score=136.45 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeE--EEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVT--YVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIK 105 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~--~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~ 105 (587)
.....+|||+|||+++|+++| ++|++| .|. +|+|++|++|++||||||+|.++++|++||+. ++..|.||+|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 346678999999999999999 899999 677 99999998899999999999999999999975 7899999999999
Q ss_pred eccccc
Q psy1534 106 EAVEDK 111 (587)
Q Consensus 106 ~a~~~~ 111 (587)
++.+++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 262
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=122.50 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|.+|.+++ +||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 44578999999999999999999999999999999985 49999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
+++.+
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87754
No 263
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1.7e-15 Score=131.53 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=75.7
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
.++|||+|||+++++++|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++|| .||+..|.|+.|+|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5799999999999999999999999999999999997 4999999999999999999999 8999999999999999876
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 264
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=126.43 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF--ERRITVR 233 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~ 233 (587)
.++.++|||+|||+++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.||+..+. |++|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999999865 689999999999999999999999999 9999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
+++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998765
No 265
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=124.43 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=68.5
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCccc--CceEEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRID--GKIIDVTF 586 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~--g~~i~v~~ 586 (587)
.++|||.|||+++|++||+++|++||.|..+++..++++|||+|++.++|++||+.||+..|. |++|+|.+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 579999999999999999999999999999999888899999999999999999999999999 99999986
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-16 Score=124.39 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=71.7
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
++|||+|||+++++++|+++|++||.|.+|.+++++. ++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999999975 9999999999999999999999999 9999999999986
No 267
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=3.7e-16 Score=150.48 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=74.3
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCC--CeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVG--DVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G--~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
...+|||+|||+++|+++| ++|++|| +|++|+|++|+ ++++||||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 4568999999999999999 8999999 99999999997 999999999999999999999999999999999999999
Q ss_pred ccc
Q psy1534 107 AVE 109 (587)
Q Consensus 107 a~~ 109 (587)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 873
No 268
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=129.33 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+..++|||+|||.++++++| ++|++||+|.+|+|+++ +|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3456789999999999999999 89999999999999986 79999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98554
No 269
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=128.42 Aligned_cols=78 Identities=28% Similarity=0.434 Sum_probs=73.5
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVAD 239 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~~ 239 (587)
++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++|++.||+..+.|++|.|+++..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999987 68999999999999999999999999999999999998876
Q ss_pred CC
Q psy1534 240 RL 241 (587)
Q Consensus 240 ~~ 241 (587)
+.
T Consensus 77 ~~ 78 (101)
T 2hvz_A 77 RR 78 (101)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 270
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=3.7e-15 Score=124.90 Aligned_cols=79 Identities=25% Similarity=0.394 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+.++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++||+.||+..|.|++|.|+++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 3468999999999999999999999999999999874 599999999999999999999999999999999998
Q ss_pred CCCCCC
Q psy1534 237 VADRLD 242 (587)
Q Consensus 237 ~~~~~~ 242 (587)
++....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 876443
No 271
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=9.8e-17 Score=141.33 Aligned_cols=81 Identities=20% Similarity=0.134 Sum_probs=73.9
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
.....+|||+|||+++|+++| ++|++|| |.+|+|++|++|++||||||+|.+.++|++|| .+|+..|.+|.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 346679999999999999999 8999999 67999999988999999999999999999999 78999999999999998
Q ss_pred cccc
Q psy1534 108 VEDK 111 (587)
Q Consensus 108 ~~~~ 111 (587)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8554
No 272
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=123.75 Aligned_cols=77 Identities=12% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+..++|||+|||+++++++| ++|++||+|.+|+|++ +||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467789999999999999999 8999999999999985 4999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+.++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98553
No 273
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=2e-15 Score=126.52 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=70.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
....++|||+|||+++++++| ++|++||+|.+|+|++ +||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 346689999999999999999 8999999999999874 69999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 108 VEDK 111 (587)
Q Consensus 108 ~~~~ 111 (587)
..+.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8554
No 274
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-16 Score=135.48 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+...+|||+|||+++++++| ++|++||.|.+|.+..+. +++++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346689999999999999999 899999999544333332 788999999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98554
No 275
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=3.3e-15 Score=123.65 Aligned_cols=78 Identities=19% Similarity=0.445 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 155 NCPLINKVFVANLDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..++.++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|.+|++.||+..+.|++|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455688999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 987654
No 276
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-15 Score=127.00 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 154 INCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 154 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
...+..++|||+|||+++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3455678999999999999999999999999999999984 47999999999999999999999999999999999
Q ss_pred EccCC
Q psy1534 234 MDRVA 238 (587)
Q Consensus 234 ~a~~~ 238 (587)
+++++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 98753
No 277
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=124.41 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=67.2
Q ss_pred cEEEEecCCCCC------cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCe-EEEE
Q psy1534 160 NKVFVANLDYKV------DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFER-RITV 232 (587)
Q Consensus 160 ~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~v 232 (587)
++|||+|||+.+ ++++|+++|++||.|.+|.|+ ..+|+++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 789999999999999999988 34689999999999999999999999999999999 8876
No 278
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=121.55 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
....++|||+|||+++++++|+++|++||.|.+|.|++ +||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34568999999999999999999999999999999985 49999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 279
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.3e-16 Score=128.72 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
.+..++|||+|||.++++++| ++|++||+|.+|+|++ ++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 345689999999999999999 8999999999999984 5799999999999999999999999999999999988
Q ss_pred cc
Q psy1534 108 VE 109 (587)
Q Consensus 108 ~~ 109 (587)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 280
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=124.55 Aligned_cols=73 Identities=30% Similarity=0.458 Sum_probs=69.8
Q ss_pred CCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 514 ~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.+.++|||.|||+++|+++|+++|++||.|..+.+.+++++|||+|++.++|++||+.||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3467999999999999999999999999999999999899999999999999999999999999999999986
No 281
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=133.77 Aligned_cols=80 Identities=33% Similarity=0.545 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999975 89999999999999999999999999999999999987
Q ss_pred c
Q psy1534 235 D 235 (587)
Q Consensus 235 a 235 (587)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 282
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=9.7e-16 Score=141.45 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
.+...+|||+|||+++++++| ++|++||+|++|+|+.++++.++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345679999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy1534 108 VED 110 (587)
Q Consensus 108 ~~~ 110 (587)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 844
No 283
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=127.12 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCCCeEEEeCCCCC-CChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCC--CcccCceEEEEE
Q psy1534 513 NIERDTVVVKNLPPT-ITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDR--TRIDGKIIDVTF 586 (587)
Q Consensus 513 ~~~~~~v~V~~Lp~~-~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g--~~~~g~~i~v~~ 586 (587)
..+..+|||+|||++ +|++||+++|++||.|..+.|.+.+++|||+|++.++|+.||+.||+ ..|.||+|+|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 445789999999998 99999999999999999999998899999999999999999998864 569999999975
No 284
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-15 Score=123.38 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCCCCCCcEEEcCCCCCCCHHHH-HhcccC--CCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 27 TGAPLEVPVVMDLIQGDASLYQI-SHLSTV--GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~--G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
...+..++|||+|||+++++++| ++|++| |.|.+|+++ +|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 33456789999999999999999 899999 999999875 47999999999999999999999999999999
Q ss_pred EEeccccc
Q psy1534 104 IKEAVEDK 111 (587)
Q Consensus 104 V~~a~~~~ 111 (587)
|.++..+.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998554
No 285
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=125.31 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.+..++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.||+..|.|++|.|+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34468999999999999999999999999997 667664 56899999999999999999999999999999999999
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 286
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=1.8e-15 Score=128.40 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCCcEEEcCCCCC-CCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGD-ASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~-~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
+..++|||+|||++ +++++| ++|++||+|.+|+| ++|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45579999999999 999999 89999999999998 4699999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 108 VEDK 111 (587)
Q Consensus 108 ~~~~ 111 (587)
..++
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8443
No 287
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.6e-15 Score=128.22 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=70.6
Q ss_pred cCCCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 26 ETGAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 26 ~~~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
........+|||+|||+++++++| ++|++||+|++|+|+ +|||||+|.+.++|++|++.||+..|.|++|.|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344567789999999999999999 899999999999998 589999999999999999999999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++..+
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 999854
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-16 Score=133.54 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=73.3
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....+|||+|||+++++++| ++|++||+|.+ .++++. +++++|||||+|.+.++|++|++ ||+..|.|++|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345679999999999999999 89999999998 666665 89999999999999999999998 999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98543
No 289
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=2.3e-15 Score=127.18 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.....++|||+|||+++++++|+++|++||.|.+|.|+ +|||||+|.+.++|++|++.||+..+.|++|.|++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999998 58999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
++.+.+
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=1.1e-15 Score=126.69 Aligned_cols=82 Identities=15% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHH----HHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLR----EVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
.++.++|||+|||+++++++|+ ++|++||.|.+|.+++ +++++|||||+|.+.++|.+|++.||+..+.|++|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567899999999999999999 9999999999999874 466789999999999999999999999999999999
Q ss_pred EEEccCCC
Q psy1534 232 VRMDRVAD 239 (587)
Q Consensus 232 v~~a~~~~ 239 (587)
|++++++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998765
No 291
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=124.61 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=74.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..+.++|||+|||+++++++|+++|+.| ..|.+++++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999999999999977 378888887 489999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987754
No 292
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-16 Score=127.03 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+...+|||+|||+++++++| ++|++||+|. ++++.+ +++|||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456789999999999999999 8999999997 777764 6789999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+..+
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9854
No 293
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=126.27 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=71.3
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
..+...+|||+|||+++++++| ++|++||+|..| ..+++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3446689999999999999999 899999988766 44788999999999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+..+
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 9754
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=120.23 Aligned_cols=73 Identities=22% Similarity=0.385 Sum_probs=69.5
Q ss_pred CCCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHh-CCCcccCceEEEEE
Q psy1534 514 IERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMM-DRTRIDGKIIDVTF 586 (587)
Q Consensus 514 ~~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l-~g~~~~g~~i~v~~ 586 (587)
.+.++|||.|||.++|+++|+++|++||.|..+.+.+++++|||+|++.++|++||+.| |+..|.|++|+|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34679999999999999999999999999999999998899999999999999999999 99999999999986
No 295
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.2e-15 Score=123.76 Aligned_cols=77 Identities=17% Similarity=0.325 Sum_probs=69.6
Q ss_pred CCCCCCCcEEEcCCCC-CCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 27 TGAPLEVPVVMDLIQG-DASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVI 104 (587)
Q Consensus 27 ~~~~~~~~vfV~nlp~-~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V 104 (587)
...+..++|||+|||+ ++++++| ++|++||+|.+|+|. +|||||+|.+.++|++|++.||+..+.|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445778999999998 9999999 899999999999984 689999999999999999999999999999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++..+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998743
No 296
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=132.56 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=73.0
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCe----eEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKV----ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.++|||+|||+++|+++|+++|++||.| ..|.|+++++|+++|||||+|.+.++|++||+. |++.|.+|.|.|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 5799999999999999999999999975 689999998899999999999999999999986 99999999999988
Q ss_pred ccCC
Q psy1534 235 DRVA 238 (587)
Q Consensus 235 a~~~ 238 (587)
+..+
T Consensus 102 a~~~ 105 (123)
T 2dha_A 102 STAA 105 (123)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7544
No 297
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.1e-15 Score=121.85 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhc--CCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLA--GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..+.++|||+|||+++++++|+++|++| |.|.+|.+. +|||||+|.+.++|++|++.||+..|.|++|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457899999999999999999999999 999999875 5799999999999999999999999999999999
Q ss_pred EccCCCC
Q psy1534 234 MDRVADR 240 (587)
Q Consensus 234 ~a~~~~~ 240 (587)
+++++.+
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987764
No 298
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=1.2e-15 Score=127.61 Aligned_cols=81 Identities=27% Similarity=0.512 Sum_probs=75.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|||+|||+++++++|+++|+.||.|.+|.|++++.++++|||||+|.+.++|++|++ ++..+.|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4579999999999999999999999999999999999889999999999999999999997 99999999999999877
Q ss_pred CCC
Q psy1534 238 ADR 240 (587)
Q Consensus 238 ~~~ 240 (587)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 653
No 299
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=2e-15 Score=129.20 Aligned_cols=69 Identities=32% Similarity=0.607 Sum_probs=65.1
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCce-----EEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKI-----IDVT 585 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~-----i~v~ 585 (587)
.++|||.|||+++||+||+++|++||+|..+.|..+ ++|||+|++.++|++||+.||+.+|.|++ |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 689999999999999999999999999999999887 99999999999999999999999999998 6664
No 300
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-15 Score=122.80 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN-QNLFERRITVRM 234 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~l~v~~ 234 (587)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|++|+|++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 44679999999999999999999999999 6666663 378999999999999999999999 999999999999
Q ss_pred ccCCCC
Q psy1534 235 DRVADR 240 (587)
Q Consensus 235 a~~~~~ 240 (587)
++++..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987654
No 301
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-16 Score=131.57 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=76.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCC---eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGK---VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
....++|||+|||+++++++|+++|+.||. |.+|.|++++.|+++|||||+|.+.++|++||+ +|+..+.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345689999999999999999999999988 899999999889999999999999999999998 8999999999999
Q ss_pred EEccCC
Q psy1534 233 RMDRVA 238 (587)
Q Consensus 233 ~~a~~~ 238 (587)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 987654
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=122.26 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=68.0
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEA 107 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a 107 (587)
...++|||+|||+++++++| ++|++||+|.+| +.++ +++ ||||+|.+.++|++|++ ||+..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 45679999999999999999 899999999997 5554 664 99999999999999999 9999999999999988
Q ss_pred cccc
Q psy1534 108 VEDK 111 (587)
Q Consensus 108 ~~~~ 111 (587)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7543
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=128.33 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCe----eEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKV----ENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
..+.++|||+|||+++++++|+++|++||.| ..+.+. .++++|||||+|.+.++|++||+.||+..|.|++|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3457899999999999999999999999998 455544 578899999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q psy1534 232 VRMDRVADRL 241 (587)
Q Consensus 232 v~~a~~~~~~ 241 (587)
|+++..+...
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999887643
No 304
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=123.18 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=69.7
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCC-eEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC-ceeCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGD-VTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHR-FETKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~-V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g-~~l~gr~i~V 104 (587)
..+..++|||+|||+++++++| ++|++||+ |..+.+. ++|||||+|.+.++|++|++.||+ ..|.|++|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 3456789999999999999999 89999999 6767664 379999999999999999999999 9999999999
Q ss_pred Eeccccc
Q psy1534 105 KEAVEDK 111 (587)
Q Consensus 105 ~~a~~~~ 111 (587)
.++..+.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998553
No 305
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=3.3e-15 Score=121.33 Aligned_cols=74 Identities=15% Similarity=0.341 Sum_probs=69.2
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVE 109 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~ 109 (587)
..++|||+|||+++++++| ++|++| +|.+|+|. +++|||||+|.+.++|++|++.||+..+.|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 5689999999999999999 899999 99999985 5789999999999999999999999999999999999974
Q ss_pred c
Q psy1534 110 D 110 (587)
Q Consensus 110 ~ 110 (587)
+
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 306
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=7.7e-15 Score=124.52 Aligned_cols=77 Identities=18% Similarity=0.368 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCC-CcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDYK-VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
....++|||+|||++ +++++|+++|++||.|.+|.| ++|||||+|.+.++|++|++.||+..|.|++|+|++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 334689999999999 999999999999999999998 378999999999999999999999999999999999
Q ss_pred ccCCC
Q psy1534 235 DRVAD 239 (587)
Q Consensus 235 a~~~~ 239 (587)
++...
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97654
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=127.11 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=68.6
Q ss_pred CCCCcEEE--cCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCcee-----CCeE
Q psy1534 30 PLEVPVVM--DLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET-----KGRK 101 (587)
Q Consensus 30 ~~~~~vfV--~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l-----~gr~ 101 (587)
++.++||| +||++++++++| ++|++||+|++|.|+.+ ||||||+|.+.++|++|++.|||..| .+++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45678999 779999999999 89999999999988753 79999999999999999999999998 6899
Q ss_pred EEEEecccc
Q psy1534 102 LVIKEAVED 110 (587)
Q Consensus 102 i~V~~a~~~ 110 (587)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998844
No 308
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.5e-15 Score=125.48 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=69.2
Q ss_pred CCCCCcEEEcCCCC-CCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQG-DASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~-~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.+...+|||+|||+ ++++++| ++|++||+|.+|+|. +|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35678999999998 9999999 899999999999985 58999999999999999999999999999999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
+..+.
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 98543
No 309
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=2.4e-15 Score=144.75 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcC--CeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAG--KVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
..++|||+|||+++++++|+++|++|| .|++|+|++|+ +++++|||||+|.+.++|++||+.||++.|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457999999999999999999999999 99999999997 499999999999999999999999999999999999999
Q ss_pred ccCC
Q psy1534 235 DRVA 238 (587)
Q Consensus 235 a~~~ 238 (587)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 310
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=8.2e-16 Score=120.83 Aligned_cols=74 Identities=27% Similarity=0.460 Sum_probs=69.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 161 KVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 161 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
+|||+|||+++++++|+++|++||.|.+|.+++++. ++++|||||+|.+.++|++|++. ++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999875 89999999999999999999975 899999999999875
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=124.99 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCCCCcEEEE--ecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-----CC
Q psy1534 155 NCPLINKVFV--ANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL-----FE 227 (587)
Q Consensus 155 ~~~~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~-----~g 227 (587)
...++++||| +||++++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|||+.+ .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 4456789999 779999999999999999999999988753 78999999999999999999999998 68
Q ss_pred eEEEEEEccCCC
Q psy1534 228 RRITVRMDRVAD 239 (587)
Q Consensus 228 ~~l~v~~a~~~~ 239 (587)
++|.|.++...+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999987554
No 312
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=126.60 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=68.9
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
..++|||.|||+++|++||+++|.+||.|..+.+...+++|||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 357999999999999999999999999999999988889999999999999999999999999999999976
No 313
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=4.7e-16 Score=136.97 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=74.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|||+|||++++|++|+++|++|| |++|.|+++++++++|||||+|.+.++|++|| .+|+..|.+|.|+|.++..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 357999999999999999999999999 77999999988999999999999999999999 7899999999999998876
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
..
T Consensus 123 ~~ 124 (139)
T 2hgn_A 123 TG 124 (139)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 314
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.8e-15 Score=123.94 Aligned_cols=79 Identities=22% Similarity=0.463 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCC-CCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 156 CPLINKVFVANLDY-KVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 156 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
.++.++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++|++.||+..+.|++|.|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44578999999998 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy1534 235 DRVADRL 241 (587)
Q Consensus 235 a~~~~~~ 241 (587)
++.+.+.
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9877543
No 315
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=5.2e-15 Score=126.65 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
.++.++|||+|||+++++++|+++|++||.|.+|.|+++ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 445789999999999999999999999999999999875 456899999999999999999999999999999999998
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7654
No 316
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=126.20 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=71.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
.++|||+|||+++++++|+++|++||.|..|.|++ ++|||||+|.+.++|++||+.||+..+.|++|.|.|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57999999999999999999999999999999875 4789999999999999999999999999999999998765
Q ss_pred C
Q psy1534 239 D 239 (587)
Q Consensus 239 ~ 239 (587)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 317
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=1.4e-15 Score=125.89 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-----HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-----SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-----~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
.+..++|||+|||+++++++| ++|++||+|.+|+|++ ++.++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 356789999999999999987 4799999999999874 577889999999999999999999999999999999
Q ss_pred EEecccc
Q psy1534 104 IKEAVED 110 (587)
Q Consensus 104 V~~a~~~ 110 (587)
|.++..+
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999854
No 318
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-16 Score=129.63 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=73.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCC-CCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDK-DGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...++|||+|||+++++++|+++|++||.|.. .++.+. .++++|||||+|.+.++|++||+ ||+..|.|+.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34689999999999999999999999999877 555554 48899999999999999999998 9999999999999999
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8765
No 319
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=1.4e-15 Score=131.39 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=72.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCee--EEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVE--NVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
...++|||+|||+++++++|+++|++| .|+ +|+|++|++|+++|||||+|.+.++|++||+. ++..|.||.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 346799999999999999999999999 677 99999998899999999999999999999975 77999999999988
Q ss_pred ccCC
Q psy1534 235 DRVA 238 (587)
Q Consensus 235 a~~~ 238 (587)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7543
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=123.57 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+.++|||+|||+++++++|+++|++||.|..+ ...++++|||||+|.+.++|.+|++.||+..+.|++|.|+++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 346899999999999999999999999988666 3457889999999999999999999999999999999999998
Q ss_pred CCCC
Q psy1534 237 VADR 240 (587)
Q Consensus 237 ~~~~ 240 (587)
++.+
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 321
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=120.05 Aligned_cols=78 Identities=29% Similarity=0.367 Sum_probs=68.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
..++|||+|||+++++++|+++|++||.|.+| +.++. ++ ||||+|.+.++|++||+ ||+..|.|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 35799999999999999999999999999987 44443 44 99999999999999999 99999999999999887
Q ss_pred CCCCC
Q psy1534 237 VADRL 241 (587)
Q Consensus 237 ~~~~~ 241 (587)
.+...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 66543
No 322
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=6.9e-15 Score=126.86 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCceeCC--eEEEEEe
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGS-AIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKE 106 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~-aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~ 106 (587)
.-.+|||+||++++|+++| ++|++||+|.+|+|+.+ ++|| |||+|.+.++|++|++.|||..|.+ ++|+|.+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3457999999999999999 89999999999999874 3677 9999999999999999999999998 9999999
Q ss_pred ccccc
Q psy1534 107 AVEDK 111 (587)
Q Consensus 107 a~~~~ 111 (587)
++.+.
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98543
No 323
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=132.06 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEe-eCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIA-LDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
...++|||+|||+++++++|+++|+.||.|.++.++ .+.+|+++|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345799999999999999999999999999885444 44569999999999999999999998 9999999999999998
Q ss_pred cCC
Q psy1534 236 RVA 238 (587)
Q Consensus 236 ~~~ 238 (587)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=4.4e-15 Score=137.00 Aligned_cols=85 Identities=21% Similarity=0.402 Sum_probs=80.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRM 234 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 234 (587)
...+.++|||+|||+.+++++|+++|++||.|.+|.|+.+++++++|||||+|.+.++|++||+.||+..|.|++|+|++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy1534 235 DRVAD 239 (587)
Q Consensus 235 a~~~~ 239 (587)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87654
No 325
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=5.2e-15 Score=132.51 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=69.2
Q ss_pred CCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEecc
Q psy1534 32 EVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAV 108 (587)
Q Consensus 32 ~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~a~ 108 (587)
..+|||+||++++|+++| ++|++||+|++|+|+.++ ++|||||+|.+.++|++|++.|||..|.+ ++|+|.++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 347899999999999999 899999999999997653 57999999999999999999999999966 999999998
Q ss_pred cc
Q psy1534 109 ED 110 (587)
Q Consensus 109 ~~ 110 (587)
.+
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 326
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=1.1e-14 Score=130.32 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=71.4
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEcc
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDR 236 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~ 236 (587)
..+|||+||++.+++++|+++|++||.|++|.|..++ ++|||||+|.+.++|++|++.|||..|.+ ++|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4678999999999999999999999999999997643 57899999999999999999999999976 999999998
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
.+.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-16 Score=135.35 Aligned_cols=84 Identities=24% Similarity=0.402 Sum_probs=78.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHHHhcCCeeE--------EEEeeCCC-CCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy1534 157 PLINKVFVANLDYKVDEKKLREVFRLAGKVEN--------VEIALDKD-GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227 (587)
Q Consensus 157 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 227 (587)
.+.++|||+|||+++++++|+++|++||.|.. |.|++++. ++++|||||+|.+.++|++|++.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34679999999999999999999999999998 89999865 8999999999999999999999999999999
Q ss_pred eEEEEEEccCCCC
Q psy1534 228 RRITVRMDRVADR 240 (587)
Q Consensus 228 ~~l~v~~a~~~~~ 240 (587)
++|+|+++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999887653
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.2e-15 Score=123.78 Aligned_cols=79 Identities=9% Similarity=0.167 Sum_probs=71.5
Q ss_pred cEEEEecC----CCCCcHHHHHHHHHhcCCeeEEEEeeCCC-CCcceEEEEEecC----HHH----HHHHHH--HhCCce
Q psy1534 160 NKVFVANL----DYKVDEKKLREVFRLAGKVENVEIALDKD-GKSRGFGTVEFDH----PVE----AVQSIS--MLNNQN 224 (587)
Q Consensus 160 ~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~----~~~----A~~Al~--~l~g~~ 224 (587)
++|||+|| |+.+++++|+++|+.||+|.+|.++.|+. |+++|||||+|.+ +++ |.+|+. .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 99999999999999999999999999996 9999999999996 333 899998 789999
Q ss_pred eCCeEEEEEEccCC
Q psy1534 225 LFERRITVRMDRVA 238 (587)
Q Consensus 225 ~~g~~l~v~~a~~~ 238 (587)
|.|++|+|++.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987654
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=118.11 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..+.++|||+|| ++++++|+++|++||.|.+|.|. +++|||||+|.+.++|++||+.||+..|.|++|+|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345689999996 89999999999999999999985 35799999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy1534 236 RVADRL 241 (587)
Q Consensus 236 ~~~~~~ 241 (587)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 330
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.9e-14 Score=124.11 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=70.3
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGF-GTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMD 235 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a 235 (587)
...|||+||++.+|+++|+++|++||.|.+|.|+.+. +|| |||+|.+.++|++|++.|||..|.+ ++|+|.|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 4578899999999999999999999999999988743 688 9999999999999999999999998 89999999
Q ss_pred cCCC
Q psy1534 236 RVAD 239 (587)
Q Consensus 236 ~~~~ 239 (587)
+.+.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 331
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.6e-14 Score=120.93 Aligned_cols=82 Identities=17% Similarity=0.074 Sum_probs=72.0
Q ss_pred CCCCcEEEcCCCC-----CCCHHHH-HhcccCCCeEEEEEeeCC--CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeE
Q psy1534 30 PLEVPVVMDLIQG-----DASLYQI-SHLSTVGDVTYVEILNDD--TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101 (587)
Q Consensus 30 ~~~~~vfV~nlp~-----~~t~~~l-~~F~~~G~V~~v~i~~d~--~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~ 101 (587)
.+.+.|+|+|+.. +.++++| ++|++||+|++|+|++++ +++++|||||+|.+.++|++|++.|||..|.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 3477888 789999999999999986 4789999999999999999999999999999999
Q ss_pred EEEEeccccc
Q psy1534 102 LVIKEAVEDK 111 (587)
Q Consensus 102 i~V~~a~~~~ 111 (587)
|.|.++....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999998543
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=8.2e-15 Score=118.96 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
..++|||+|||+++++++|+++|++| .|.+|+|. +++|||||+|.+.++|++|++.||+..+.|++|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35789999999999999999999999 99999885 4689999999999999999999999999999999999865
Q ss_pred CC
Q psy1534 238 AD 239 (587)
Q Consensus 238 ~~ 239 (587)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=122.02 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEE-EEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYV-EILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKE 106 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v-~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~ 106 (587)
.....+|||+|||+++++++| ++|++||+|.+| .|++++. .+.|||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999 899999999999 4888752 23499999999999999999999999999999999
Q ss_pred cccc
Q psy1534 107 AVED 110 (587)
Q Consensus 107 a~~~ 110 (587)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9855
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=6.8e-15 Score=131.18 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=74.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE------EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENV------EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v------~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 229 (587)
..+.++|||+|||+++++++|+++|++||.|..| .+....+++++|||||+|.+.++|.+||..||+..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999998764 1222235889999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q psy1534 230 ITVRMDRVADR 240 (587)
Q Consensus 230 l~v~~a~~~~~ 240 (587)
|.|.+++....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977643
No 335
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=126.09 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-C---CCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-T---GKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~---g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
....++|||+|||+++++++| ++|++||+|. +.++.++ + |++||||||+|.+.++|++|++.|+ .+.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 346789999999999999999 8999999999 8888876 5 7999999999999999999999983 36666666
Q ss_pred EEecc
Q psy1534 104 IKEAV 108 (587)
Q Consensus 104 V~~a~ 108 (587)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65443
No 336
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=118.94 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEE-EEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENV-EIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
..++|||+|||+++++++|+++|++||.|.+| .|++++. .+.|||+|.+.++|++|++.||+..|.|++|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46799999999999999999999999999999 5888754 3449999999999999999999999999999999998
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 337
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=1.3e-14 Score=117.95 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCce--eCCeEEEE
Q psy1534 28 GAPLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFE--TKGRKLVI 104 (587)
Q Consensus 28 ~~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~--l~gr~i~V 104 (587)
..+...+|||+|||+++|+++| ++|++||+|.+|+|+++ +||||||+|.+.++|++ +++.. +.+++|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 3467789999999999999999 89999999999999985 78999999999999984 35544 56999999
Q ss_pred Eecccc
Q psy1534 105 KEAVED 110 (587)
Q Consensus 105 ~~a~~~ 110 (587)
.++.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 999854
No 338
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=1.9e-14 Score=116.88 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee--CCeEEEE
Q psy1534 155 NCPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL--FERRITV 232 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v 232 (587)
..++.++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++ +++..+ .|++|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 3455789999999999999999999999999999999985 68999999999999984 455554 5999999
Q ss_pred EEccCCC
Q psy1534 233 RMDRVAD 239 (587)
Q Consensus 233 ~~a~~~~ 239 (587)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987764
No 339
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=3.7e-14 Score=121.80 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=65.7
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCceeCC--eEEEEEeccc
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGS-AIVEFQSPDLVRKAVNKMHRFETKG--RKLVIKEAVE 109 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~-aFV~F~~~e~A~~Al~~l~g~~l~g--r~i~V~~a~~ 109 (587)
.|||+||++++++++| ++|++||+|++|+|+.. .|| |||+|.+.++|++|++.|||..|.| ++|+|.++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4789999999999999 89999999999999763 276 9999999999999999999999987 6999999985
Q ss_pred c
Q psy1534 110 D 110 (587)
Q Consensus 110 ~ 110 (587)
+
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 4
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=2e-14 Score=116.35 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhc----C-------CeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEE
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNC----G-------DIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIID 583 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~ 583 (587)
+.++|||.|||+++|++||+++|++| | .|..+.+..++++|||+|.+.++|++|| .||+..|.|++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 35799999999999999999999999 8 9999999988999999999999999999 9999999999999
Q ss_pred EE
Q psy1534 584 VT 585 (587)
Q Consensus 584 v~ 585 (587)
|.
T Consensus 84 V~ 85 (87)
T 2hzc_A 84 IR 85 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 96
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=115.15 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=65.8
Q ss_pred CCcE-EEEecCCCCCcHHH----HHHHHHhc-CCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 158 LINK-VFVANLDYKVDEKK----LREVFRLA-GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 158 ~~~~-l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
+..+ |||+|||+++++++ |+++|++| |+|.+| . .|+|||+|.+.++|.+|++.|||..+.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3445 99999999999988 55899999 599998 2 29999999999999999999999999999999
Q ss_pred EEEccCCCC
Q psy1534 232 VRMDRVADR 240 (587)
Q Consensus 232 v~~a~~~~~ 240 (587)
|.+|+.+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987763
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.2e-14 Score=124.28 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeE-----EEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR-----ITV 232 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~-----l~v 232 (587)
..++|||+|||+++++++|+++|++||.|.+|.|+.+ |||||+|.+.++|++||+.||+..|.|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3579999999999999999999999999999999875 89999999999999999999999999988 777
Q ss_pred EEccCCC
Q psy1534 233 RMDRVAD 239 (587)
Q Consensus 233 ~~a~~~~ 239 (587)
..+.+..
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7766544
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=6.5e-15 Score=131.31 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=71.8
Q ss_pred CCCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEE------EeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeE
Q psy1534 29 APLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVE------ILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRK 101 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~------i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~ 101 (587)
.....+|||+|||+++++++| ++|++||.|.+|. +....+++++|||||+|.+.++|++|++.||+..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 446679999999999999999 8999999998751 222247899999999999999999999999999999999
Q ss_pred EEEEecccc
Q psy1534 102 LVIKEAVED 110 (587)
Q Consensus 102 i~V~~a~~~ 110 (587)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999743
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=1e-13 Score=129.78 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=73.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRVA 238 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~~ 238 (587)
.++|||+|||+++++++|+++|++||.|.+|+|+++.+++++|||||+|.+.++|++|+..++ ..+.|++|.|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 479999999999999999999999999999999999889999999999999999999997654 6999999999987553
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=115.91 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=63.6
Q ss_pred CCCc-EEEcCCCCCCCHHHH-----HhcccC-CCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 31 LEVP-VVMDLIQGDASLYQI-----SHLSTV-GDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLV 103 (587)
Q Consensus 31 ~~~~-vfV~nlp~~~t~~~l-----~~F~~~-G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~ 103 (587)
+..+ |||+|||+++++++| ++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+|..|.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3444 999999999999884 589999 599998 33 9999999999999999999999999999999
Q ss_pred EEecccc
Q psy1534 104 IKEAVED 110 (587)
Q Consensus 104 V~~a~~~ 110 (587)
|.++..+
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9999844
No 346
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=118.33 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 30 PLEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 30 ~~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...++|||+|||+++++++| ++|++||+|.+|+|+++ +||||||+|.+.++|++|+.. ...+.+++|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 35689999999999999999 89999999999999876 689999999999999875432 455689999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=7.3e-14 Score=116.90 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCC-----CCcHHHHHHHHHhcCCeeEEEEeeCCC--CCcceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy1534 157 PLINKVFVANLDY-----KVDEKKLREVFRLAGKVENVEIALDKD--GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERR 229 (587)
Q Consensus 157 ~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 229 (587)
.++++|+|.||.. +-++++|+++|++||.|.+|.|++++. ++++||+||+|.+.++|.+|++.|||+.+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 237899999999999999999999864 688999999999999999999999999999999
Q ss_pred EEEEEccC
Q psy1534 230 ITVRMDRV 237 (587)
Q Consensus 230 l~v~~a~~ 237 (587)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 348
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=2.9e-14 Score=150.17 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=76.3
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD-TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~-~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
...+|||+|||+++|+++| ++|++||+|+.|+|+.++ ++.++|||||+|.+.++|.+||+.||+..|.|++|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4579999999999999999 899999999999999996 99999999999999999999999999999999999999998
Q ss_pred ccc
Q psy1534 109 EDK 111 (587)
Q Consensus 109 ~~~ 111 (587)
.+.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 443
No 349
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=6.2e-14 Score=120.41 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEcc
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGF-GTVEFDHPVEAVQSISMLNNQNLFE--RRITVRMDR 236 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~a~ 236 (587)
..|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|.+|++.|||..|.| ++|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999999763 386 9999999999999999999999987 689999988
Q ss_pred CCC
Q psy1534 237 VAD 239 (587)
Q Consensus 237 ~~~ 239 (587)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 350
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.5e-14 Score=114.85 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
+.++|||.|| ++|++||+++|++||.|..+.+...+++|||+|++.++|++||+.||+..|.|++|+|.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4679999996 999999999999999999999988889999999999999999999999999999999975
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=4.2e-14 Score=132.43 Aligned_cols=75 Identities=24% Similarity=0.204 Sum_probs=70.6
Q ss_pred CcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEecc
Q psy1534 33 VPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAV 108 (587)
Q Consensus 33 ~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~ 108 (587)
++|||+|||+++++++| ++|++||+|.+|+|+++.+++++|||||+|.+.++|++|++.+ +..|.|++|.|.+..
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 68999999999999999 8999999999999999989999999999999999999999765 569999999999876
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=6e-14 Score=113.49 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhc----C-------CeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLA----G-------KVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .||+..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 35799999999999999999999999 8 8999999875 799999999999999999 99999999
Q ss_pred CeEEEEEE
Q psy1534 227 ERRITVRM 234 (587)
Q Consensus 227 g~~l~v~~ 234 (587)
|++|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999873
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=115.14 Aligned_cols=77 Identities=22% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+.++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++|+.. ...+.+++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999875 589999999999999765321 3445899999999877
Q ss_pred CCC
Q psy1534 238 ADR 240 (587)
Q Consensus 238 ~~~ 240 (587)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=117.91 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=65.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC----CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD----GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
..++|||+|||+++++++|+++|++||.|. +.++.++. |+++|||||+|.+.++|++||+.|+ .+.|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457999999999999999999999999999 88887763 6899999999999999999999983 3666666665
Q ss_pred Ecc
Q psy1534 234 MDR 236 (587)
Q Consensus 234 ~a~ 236 (587)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 443
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.1e-13 Score=119.21 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEc
Q psy1534 156 CPLINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMD 235 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a 235 (587)
..+.++|||+|| ++++++|+++|++||.|.+|.|. +++|||||+|.+.++|++||+.||+..+.|++|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 345789999996 69999999999999999999986 35899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy1534 236 RVADR 240 (587)
Q Consensus 236 ~~~~~ 240 (587)
..+..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87653
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.7e-14 Score=119.42 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=63.8
Q ss_pred EEcCCCCCCCHHHH-Hhc------------ccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q psy1534 36 VMDLIQGDASLYQI-SHL------------STVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102 (587)
Q Consensus 36 fV~nlp~~~t~~~l-~~F------------~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i 102 (587)
.+.+||+++++++| ++| ++||+|++|+|+++.+++++|||||+|.++++|++|++.|||..|.||+|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 35677777777766 455 99999999999998888999999999999999999999999999999999
Q ss_pred EEEec
Q psy1534 103 VIKEA 107 (587)
Q Consensus 103 ~V~~a 107 (587)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.5e-13 Score=113.92 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=69.9
Q ss_pred cccCCCCCCCcEEEcCCCCCCC-----------HHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH
Q psy1534 24 RIETGAPLEVPVVMDLIQGDAS-----------LYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNK 91 (587)
Q Consensus 24 ~~~~~~~~~~~vfV~nlp~~~t-----------~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~ 91 (587)
+....+...+.|+|+||....+ +++| ++|++||+|.+|.| .++ .++|||||+|.+.++|++|++.
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHH
Confidence 3344556778899999944432 4677 78999999999965 554 3789999999999999999999
Q ss_pred hCCceeCCeEEEEEecccc
Q psy1534 92 MHRFETKGRKLVIKEAVED 110 (587)
Q Consensus 92 l~g~~l~gr~i~V~~a~~~ 110 (587)
|||..|.|++|+|.++..+
T Consensus 84 lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp STTCEETTEECEEEECCSC
T ss_pred cCCCEECCcEEEEEEeCCC
Confidence 9999999999999999854
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=2.6e-13 Score=129.84 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCCC---------cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee-
Q psy1534 156 CPLINKVFVANLDYKV---------DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL- 225 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~- 225 (587)
....++|||+||+..+ +|++|+++|++||.|++|+|+.+ +|||||+|.+.++|+.|++.|+++.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999998 79999999999999999999864 79999999999999999999999999
Q ss_pred -----------CCeEEEEEEccCCCC
Q psy1534 226 -----------FERRITVRMDRVADR 240 (587)
Q Consensus 226 -----------~g~~l~v~~a~~~~~ 240 (587)
.|+.|.|+||+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.1e-13 Score=113.12 Aligned_cols=82 Identities=20% Similarity=0.108 Sum_probs=69.3
Q ss_pred CCCCcEEEcCC--CCCCC--------HHHH-HhcccCCCeEEEEEeeCCC---CCcceEEEEEECCHHHHHHHHHHhCCc
Q psy1534 30 PLEVPVVMDLI--QGDAS--------LYQI-SHLSTVGDVTYVEILNDDT---GKPRGSAIVEFQSPDLVRKAVNKMHRF 95 (587)
Q Consensus 30 ~~~~~vfV~nl--p~~~t--------~~~l-~~F~~~G~V~~v~i~~d~~---g~skG~aFV~F~~~e~A~~Al~~l~g~ 95 (587)
.+.+.|.+.|+ |.++. +++| +.|++||+|++|+|++++. ++++|+|||+|.+.++|++|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45677889998 33333 3466 7899999999999999863 468999999999999999999999999
Q ss_pred eeCCeEEEEEeccccc
Q psy1534 96 ETKGRKLVIKEAVEDK 111 (587)
Q Consensus 96 ~l~gr~i~V~~a~~~~ 111 (587)
.|.||+|+|.++....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999988543
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-12 Score=110.75 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=70.5
Q ss_pred CCCCcEEEEecCCCCCc-----------HHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCce
Q psy1534 156 CPLINKVFVANLDYKVD-----------EKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQN 224 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~ 224 (587)
..++++|+|.||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34578999999954432 6899999999999999966 544 379999999999999999999999999
Q ss_pred eCCeEEEEEEccCCCC
Q psy1534 225 LFERRITVRMDRVADR 240 (587)
Q Consensus 225 ~~g~~l~v~~a~~~~~ 240 (587)
+.|++|+|.++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999887653
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=1.8e-13 Score=130.92 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=69.6
Q ss_pred CCCCCcEEEcCCCCCC---------CHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCcee-
Q psy1534 29 APLEVPVVMDLIQGDA---------SLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFET- 97 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~---------t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l- 97 (587)
....++|||+|||.++ ++++| ++|++||+|++|+|+. +||||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3466799999999998 68889 8999999999999996 489999999999999999999999999
Q ss_pred -----------CCeEEEEEecccc
Q psy1534 98 -----------KGRKLVIKEAVED 110 (587)
Q Consensus 98 -----------~gr~i~V~~a~~~ 110 (587)
.|+.|.|.|+..+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999844
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=5.9e-13 Score=114.67 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
+.++|||.|| ++|+++|+++|++||.|..+.+...+++|||+|++.++|++||+.||+..|.|++|+|.+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4679999996 699999999999999999999988889999999999999999999999999999999986
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=6.3e-13 Score=111.26 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=71.3
Q ss_pred CCCcEEEEecC--CCCCc--------HHHHHHHHHhcCCeeEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhCCc
Q psy1534 157 PLINKVFVANL--DYKVD--------EKKLREVFRLAGKVENVEIALDKD---GKSRGFGTVEFDHPVEAVQSISMLNNQ 223 (587)
Q Consensus 157 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~g~ 223 (587)
.+++.|.|.|+ |.++. ++||++.|++||.|.+|.|++++. ++++|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 43443 379999999999999999999875 368999999999999999999999999
Q ss_pred eeCCeEEEEEEccCC
Q psy1534 224 NLFERRITVRMDRVA 238 (587)
Q Consensus 224 ~~~g~~l~v~~a~~~ 238 (587)
.+.||+|+|.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997543
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=6.4e-13 Score=113.38 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCcEEEcCCCC-----CCCHHHH-HhcccCCCeEEEEEeeCC-----CCCcceEEEEEECCHHHHHHHHHHhCCceeCC
Q psy1534 31 LEVPVVMDLIQG-----DASLYQI-SHLSTVGDVTYVEILNDD-----TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG 99 (587)
Q Consensus 31 ~~~~vfV~nlp~-----~~t~~~l-~~F~~~G~V~~v~i~~d~-----~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g 99 (587)
+.+.|+++|+-. +..++|| +.|++||+|.+|+|++++ +++++|++||+|.+.++|.+|++.|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999843 2235667 789999999999999985 35678999999999999999999999999999
Q ss_pred eEEEEEeccccc
Q psy1534 100 RKLVIKEAVEDK 111 (587)
Q Consensus 100 r~i~V~~a~~~~ 111 (587)
|+|+|.++....
T Consensus 99 R~i~v~~~~~~~ 110 (118)
T 3ue2_A 99 RKVVAEVYDQER 110 (118)
T ss_dssp EECEEEEECHHH
T ss_pred cEEEEEEcChHh
Confidence 999999987443
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=2.5e-13 Score=113.54 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=64.9
Q ss_pred EecCCCCCcHHHHHHHH------------HhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy1534 164 VANLDYKVDEKKLREVF------------RLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRIT 231 (587)
Q Consensus 164 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 231 (587)
+.+||+.+++++|++.| ++||.|.+|.|+++..++++|||||+|.+.++|.+|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777778887776666 999999999999988889999999999999999999999999999999999
Q ss_pred EEEc
Q psy1534 232 VRMD 235 (587)
Q Consensus 232 v~~a 235 (587)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=2.9e-12 Score=109.28 Aligned_cols=80 Identities=20% Similarity=0.119 Sum_probs=70.4
Q ss_pred CCcEEEEecCCC--C---CcHHHHHHHHHhcCCeeEEEEeeCCC-----CCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy1534 158 LINKVFVANLDY--K---VDEKKLREVFRLAGKVENVEIALDKD-----GKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227 (587)
Q Consensus 158 ~~~~l~V~nLp~--~---~te~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 227 (587)
++++|+|.|+-. + -.++||++.|++||.|.+|.|++++. ++++|++||+|.+.++|.+|++.|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 2 24689999999999999999999863 4678999999999999999999999999999
Q ss_pred eEEEEEEccC
Q psy1534 228 RRITVRMDRV 237 (587)
Q Consensus 228 ~~l~v~~a~~ 237 (587)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-11 Score=101.44 Aligned_cols=75 Identities=20% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCCcEEEcCCC-------CCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q psy1534 31 LEVPVVMDLIQ-------GDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102 (587)
Q Consensus 31 ~~~~vfV~nlp-------~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i 102 (587)
...+|-|.-.+ .++++++| ++|++||+|.+|+|+. ++||||||+|.+.++|++|++.++ .+.+++|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 35566666554 45799999 8999999999999983 678999999999999999998854 4689999
Q ss_pred EEEeccccc
Q psy1534 103 VIKEAVEDK 111 (587)
Q Consensus 103 ~V~~a~~~~ 111 (587)
+|.++..+.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988543
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.3e-11 Score=98.74 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred cEEEEecCC-------CCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy1534 160 NKVFVANLD-------YKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITV 232 (587)
Q Consensus 160 ~~l~V~nLp-------~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 232 (587)
.+|.|.-.. ..+++++|+++|++||.|.+|.|+. +++|||||+|.+.++|++||+.+++ +.+++|+|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 456665443 4589999999999999999999983 5799999999999999999987544 67999999
Q ss_pred EEccCCCC
Q psy1534 233 RMDRVADR 240 (587)
Q Consensus 233 ~~a~~~~~ 240 (587)
+|++.+..
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99877653
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=4.3e-11 Score=101.25 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=67.4
Q ss_pred CCCCcEEEEecCCCCC----------cHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy1534 156 CPLINKVFVANLDYKV----------DEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225 (587)
Q Consensus 156 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 225 (587)
..+++.|.|.|+=..- .++||++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|++.|||+.+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3457789999973221 136899999999999999997764 589999999999999999999999999
Q ss_pred CCeEEEEEEccCC
Q psy1534 226 FERRITVRMDRVA 238 (587)
Q Consensus 226 ~g~~l~v~~a~~~ 238 (587)
.||.|.|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999997543
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=2e-11 Score=123.10 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=66.0
Q ss_pred CCCCCCCcEEEcC--CCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeC---Ce
Q psy1534 27 TGAPLEVPVVMDL--IQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETK---GR 100 (587)
Q Consensus 27 ~~~~~~~~vfV~n--lp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~---gr 100 (587)
...++.++|||+| |++++|+++| ++|++||+|++|++.+ +||||||+|.+.++|++|++.|||..+. |+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 3446778999999 6899999999 8999999999987754 4799999999999999999999998883 45
Q ss_pred --EEEEEecc
Q psy1534 101 --KLVIKEAV 108 (587)
Q Consensus 101 --~i~V~~a~ 108 (587)
+|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67777775
No 371
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=7.2e-11 Score=99.93 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=67.9
Q ss_pred CCCeEEEeCCCCC-CChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC-HHHHHHHHHHhC--CCcccCceEEEEEC
Q psy1534 515 ERDTVVVKNLPPT-ITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS-EWTAKRAIDMMD--RTRIDGKIIDVTFF 587 (587)
Q Consensus 515 ~~~~v~V~~Lp~~-~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~-~~~a~~Ai~~l~--g~~~~g~~i~v~~~ 587 (587)
+++.|+|.||+++ ++++||+++|++||+|.+|++..+..+|||+|.+ .++|..|++.|| +.+|++..++|+++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4679999999999 9999999999999999999999988899999999 899999999995 77899999998864
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=5.4e-11 Score=100.67 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=63.4
Q ss_pred CCCcEEEcCCCCCCC----------HHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC
Q psy1534 31 LEVPVVMDLIQGDAS----------LYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG 99 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t----------~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g 99 (587)
..+.|.+.|+-.... ++|| +.|++||+|++|+|.++. ++|++||+|.+.++|++|++.|||..|.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 445688888744322 2244 679999999999997653 58999999999999999999999999999
Q ss_pred eEEEEEecccc
Q psy1534 100 RKLVIKEAVED 110 (587)
Q Consensus 100 r~i~V~~a~~~ 110 (587)
|+|+|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999999743
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=5e-11 Score=120.25 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=66.5
Q ss_pred CCCCCcEEEEec--CCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeC---Ce-
Q psy1534 155 NCPLINKVFVAN--LDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLF---ER- 228 (587)
Q Consensus 155 ~~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~- 228 (587)
...++++|||+| |++.+||++|+++|++||+|.+|.+.. +||||||+|.+.++|++||+.|||+.+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 456788999999 578999999999999999999987764 3799999999999999999999999883 45
Q ss_pred -EEEEEEcc
Q psy1534 229 -RITVRMDR 236 (587)
Q Consensus 229 -~l~v~~a~ 236 (587)
+|.|.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56777753
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=8.2e-11 Score=93.09 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=62.0
Q ss_pred CCCCCeEEEeCCCC----CCCh----HHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEE
Q psy1534 513 NIERDTVVVKNLPP----TITW----QELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDV 584 (587)
Q Consensus 513 ~~~~~~v~V~~Lp~----~~~~----~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v 584 (587)
++++.||+|..+|. ...+ .+|.+.|.+||+|..+++..+ .+||+|++.++|.+||+ |||.+++||+|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 44567999998772 3333 789999999999999999887 49999999999999999 9999999999999
Q ss_pred EE
Q psy1534 585 TF 586 (587)
Q Consensus 585 ~~ 586 (587)
.+
T Consensus 81 ~l 82 (91)
T 2dnr_A 81 AL 82 (91)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.8e-10 Score=91.51 Aligned_cols=72 Identities=25% Similarity=0.328 Sum_probs=63.1
Q ss_pred CCCCCCeEEEeCCCCC---CCh------HHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceE
Q psy1534 512 SNIERDTVVVKNLPPT---ITW------QELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKII 582 (587)
Q Consensus 512 ~~~~~~~v~V~~Lp~~---~~~------~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i 582 (587)
.++++.||+|..++.. .+| .+|.+.|.+||+|+.+++..+ .+||+|++.++|.+||+ |||.+++||.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--QMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--EEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--cEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 4556779999988743 233 679999999999999999988 59999999999999999 99999999999
Q ss_pred EEEE
Q psy1534 583 DVTF 586 (587)
Q Consensus 583 ~v~~ 586 (587)
+|.+
T Consensus 88 ~V~~ 91 (95)
T 1ufw_A 88 KISG 91 (95)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9985
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=8.8e-10 Score=87.18 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCCCcEEEEecCCC----CCcH----HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy1534 156 CPLINKVFVANLDY----KVDE----KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFE 227 (587)
Q Consensus 156 ~~~~~~l~V~nLp~----~~te----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 227 (587)
.|+..+|+|.-.+. .+.. .+|.+.|++||.|..++|..++ +||+|.+.++|.+||+ |||..+.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 45667899988762 3333 6799999999999999999874 8999999999999997 99999999
Q ss_pred eEEEEEEccCCC
Q psy1534 228 RRITVRMDRVAD 239 (587)
Q Consensus 228 ~~l~v~~a~~~~ 239 (587)
|.|+|+++.+..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999988765
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.3e-09 Score=92.29 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCCCCcEEEEecCCCC-CcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecC-HHHHHHHHHHhC--CceeCCeEE
Q psy1534 155 NCPLINKVFVANLDYK-VDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDH-PVEAVQSISMLN--NQNLFERRI 230 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~A~~Al~~l~--g~~~~g~~l 230 (587)
..++++.|||+||+++ +++++|+++|++||+|.+|.+.++.. .|||+|.+ .++|..|++.|| +..|.+..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 3567899999999999 99999999999999999999998753 69999999 899999999995 678889888
Q ss_pred EEEEcc
Q psy1534 231 TVRMDR 236 (587)
Q Consensus 231 ~v~~a~ 236 (587)
++++..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887743
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=6e-09 Score=82.76 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=63.7
Q ss_pred CCCCCcEEEEecCCCC-----CcH----HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCcee
Q psy1534 155 NCPLINKVFVANLDYK-----VDE----KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNL 225 (587)
Q Consensus 155 ~~~~~~~l~V~nLp~~-----~te----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 225 (587)
..|+..+|+|.-++.+ +.. .+|.+.|+.||+|..++|..|+ +||+|.+.++|.+||+ |||..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeee
Confidence 4567789999988743 222 5689999999999999999874 9999999999999998 999999
Q ss_pred CCeEEEEEEcc
Q psy1534 226 FERRITVRMDR 236 (587)
Q Consensus 226 ~g~~l~v~~a~ 236 (587)
.||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=1.2e-08 Score=97.62 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=59.2
Q ss_pred CHHHH-HhcccCCCeEEEEEeeCC-----CCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEeccccc
Q psy1534 45 SLYQI-SHLSTVGDVTYVEILNDD-----TGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKLVIKEAVEDK 111 (587)
Q Consensus 45 t~~~l-~~F~~~G~V~~v~i~~d~-----~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i~V~~a~~~~ 111 (587)
.+++| +.|++||+|.+|+|+++. +++++|++||+|.+.++|++|++.|||..+.||+|.|.++....
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 44566 789999999999998663 45899999999999999999999999999999999999988443
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=4.5e-08 Score=93.58 Aligned_cols=68 Identities=22% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCcHHHHHHHHHhcCCeeEEEEeeCCC-----CCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q psy1534 170 KVDEKKLREVFRLAGKVENVEIALDKD-----GKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDRV 237 (587)
Q Consensus 170 ~~te~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~~ 237 (587)
+-.+++|++.|++||.|.++.|+++.. ++++|++||+|.+.++|.+|++.|||+.+.||.|.|.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 345689999999999999999987653 48999999999999999999999999999999999999653
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=2e-07 Score=75.35 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=67.1
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhc-----CCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEE
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNC-----GDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVT 585 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~-----G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~ 585 (587)
..+|-+.|||+.+++..++.|+.++ |.|+.+-+.++-+-|+|+|++...|.+|.-.|||.+|.||+|+|-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5689999999999999999999999 999999999999999999999999999999999999999999983
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=7e-06 Score=66.38 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=65.3
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhc-----CCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLA-----GKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
.++|-+-|||..+++..|+.+.+++ |.|..|.+..|. +=|+|+|.+...|-+|.-.|+|.+|.||+|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5789999999999999999999999 999999999885 459999999999999999999999999999985
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=2.5e-05 Score=62.78 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCCCCcEEEcCCCCCCCHHHHHh-ccc-----CCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q psy1534 29 APLEVPVVMDLIQGDASLYQISH-LST-----VGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKGRKL 102 (587)
Q Consensus 29 ~~~~~~vfV~nlp~~~t~~~l~~-F~~-----~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~gr~i 102 (587)
....++|.|.|||.++.++.|++ |+. =|+|++|.... +-|+|+|.+.+.|++.++. ..+.|.+.+|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34568999999999999998864 765 35999998764 4699999999999999965 5788999999
Q ss_pred EEEecccc
Q psy1534 103 VIKEAVED 110 (587)
Q Consensus 103 ~V~~a~~~ 110 (587)
.|......
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99887633
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.00018 Score=57.79 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhc-----CCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEEC
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNC-----GDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTFF 587 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~-----G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~ 587 (587)
..+|.|.|||.+++++.|.-+|+.- |+|..++... +.|+|+|.+.+.|++.+++ ..+.|++..|.|+.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 4699999999999999999999982 3788888876 6999999999999999886 677888888888754
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=9e-05 Score=59.88 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=59.8
Q ss_pred CeEEEeCCCCCC-Ch----HHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 517 DTVVVKNLPPTI-TW----QELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 517 ~~v~V~~Lp~~~-~~----~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
.+|+|.||+.++ +. +.++++|+.|+++..-...+.=+.-.|.|.++++|.+|-..||+..|.|++|+|.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 499999998866 33 46689999999887766666546789999999999999999999999999999864
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=0.00022 Score=57.66 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=64.4
Q ss_pred CcEEEEecCCCCCcH-----HHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy1534 159 INKVFVANLDYKVDE-----KKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVR 233 (587)
Q Consensus 159 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 233 (587)
.++|+|.||+.++-. +.++++|..|+++....+++.- .-..|.|.+.++|.+|-..||+..+.|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 368999999886522 5789999999998888777653 247899999999999999999999999999999
Q ss_pred EccCCC
Q psy1534 234 MDRVAD 239 (587)
Q Consensus 234 ~a~~~~ 239 (587)
++.+..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 988554
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.0009 Score=55.65 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=61.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCceeCC-eEEEEEecc
Q psy1534 31 LEVPVVMDLIQGDASLYQISHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMHRFETKG-RKLVIKEAV 108 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~g~~l~g-r~i~V~~a~ 108 (587)
.+.-|-|-++|.+.....|+.|++||+|.+.... ++ ..+-.|+|.++.+|++||.+ ||..|.+ -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~---~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVMS---NT--GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEEC---SS--SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhCcEEEeccC---CC--CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4667999999999988888999999999998762 12 36899999999999999965 9999984 788888865
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.07 E-value=0.003 Score=50.13 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=55.9
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCC---CCcceEEEEEecCHHHHHHHHHHhCCceeC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKD---GKSRGFGTVEFDHPVEAVQSISMLNNQNLF 226 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 226 (587)
++|.|++||+.+||+++.+.++.+..+........+. -....-|+|.|.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5899999999999999999999988877666665542 223356999999999999999999999875
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0033 Score=52.25 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=58.3
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccC-ceEEEE
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDG-KIIDVT 585 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g-~~i~v~ 585 (587)
..+-|.|.+.|... -..+.++|+.||.|+..........-.|.|+++.+|++|+.+ ||..|.+ -.|=|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 46799999999886 577889999999998777754557899999999999999998 9999985 455554
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.83 E-value=0.0038 Score=49.52 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=46.8
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 221 (587)
...++| .+|.++...||.++|+.||. ..|+++.|- -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 456667 99999999999999999995 457777763 69999999999999998764
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.72 E-value=0.0015 Score=54.94 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=60.0
Q ss_pred CCCcEEEcCCCCCCCHHHHHhcccCCCeEE-EEEeeCCC---------C-----CcceEEEEEECCHHHHHHHHHHhCCc
Q psy1534 31 LEVPVVMDLIQGDASLYQISHLSTVGDVTY-VEILNDDT---------G-----KPRGSAIVEFQSPDLVRKAVNKMHRF 95 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l~~F~~~G~V~~-v~i~~d~~---------g-----~skG~aFV~F~~~e~A~~Al~~l~g~ 95 (587)
.+.-|.|=+.|.+.+...|+.|++||.|.+ +.+.++.. . ....+-.|+|.++.+|++||.. ||.
T Consensus 6 ~e~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp --CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred CceEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 455688889999999999999999999877 22211000 0 0135779999999999999966 999
Q ss_pred eeCCeEEEEEeccc
Q psy1534 96 ETKGRKLVIKEAVE 109 (587)
Q Consensus 96 ~l~gr~i~V~~a~~ 109 (587)
.|.|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999999873
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.66 E-value=0.0054 Score=48.64 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=54.8
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC--------CCeEEEEECCHHHHHHHHHHhCCCcccCc
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK--------GDIGLVRFDSEWTAKRAIDMMDRTRIDGK 580 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~--------~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~ 580 (587)
.+|.|++||...|++++.+.+.+...+.+..-... ...|.|.|.+.+++..=.+.++|+.|...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 48999999999999999999999988766555332 15699999999999999999999988644
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.55 E-value=0.0017 Score=54.64 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeE-EEee-------------------cCCCeEEEEECCHHHHHHHHHHhCCC
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKF-AEIK-------------------GKGDIGLVRFDSEWTAKRAIDMMDRT 575 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~-~~~~-------------------~~~g~g~v~f~~~~~a~~Ai~~l~g~ 575 (587)
..-|+|.+.|.+.+|. +.++|++||.|+. ..+. .....-.|.|+++.+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 5689999999888765 6688999999854 2111 1235668999999999999998 999
Q ss_pred cccCceEEEEEC
Q psy1534 576 RIDGKIIDVTFF 587 (587)
Q Consensus 576 ~~~g~~i~v~~~ 587 (587)
.|.|..|=|..|
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999988877764
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.42 E-value=0.012 Score=46.59 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=44.1
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhC
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMD 573 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~ 573 (587)
-||+-+.|.++.-.||.++|++||.|.-.=|. + ..|+|.|.+++.|..|++.++
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~I~Wid-D-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWID-D-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCCCEEEE-T-TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEEEEEEc-C-CeEEEEecCHHHHHHHHHhcc
Confidence 45544999999999999999999965433333 3 699999999999999999874
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0066 Score=48.30 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=46.5
Q ss_pred cEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy1534 160 NKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLN 221 (587)
Q Consensus 160 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 221 (587)
..++| ++|.++...||.++|+.|| -..|.++.|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999998 4567777763 69999999999999998765
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.24 E-value=0.0057 Score=48.65 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=44.4
Q ss_pred cEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC
Q psy1534 34 PVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNKMH 93 (587)
Q Consensus 34 ~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~l~ 93 (587)
-||+=.+|.++...|| ++|+.||. ..|+-+-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3454499999999999 89999995 46666666 579999999999999998764
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.49 E-value=0.025 Score=45.10 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=47.5
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCC--CCCc-ceEEEEEECCHHHHHHHHHHhCCceeCC
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDD--TGKP-RGSAIVEFQSPDLVRKAVNKMHRFETKG 99 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~--~g~s-kG~aFV~F~~~e~A~~Al~~l~g~~l~g 99 (587)
..-+|.|+.||..+||+++ +.++.+=++.....+.-+ .+.+ -.-|||.|.+.|+...-.+..+|..|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3468999999999999976 444443333222222111 1111 1468999999999999999999988864
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.01 E-value=0.019 Score=45.79 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecC--------CCeEEEEECCHHHHHHHHHHhCCCcccCc
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGK--------GDIGLVRFDSEWTAKRAIDMMDRTRIDGK 580 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~--------~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~ 580 (587)
.-+|.||.||+..||+++.+.+.+.-++.+..-... ...|.|.|.+.++...=.+.++|+.|-..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 358999999999999999988888766544332221 15699999999999999999999987644
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.94 E-value=0.023 Score=59.07 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCCcEEEcCCCCCCCHHHH-HhcccCCCeEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH
Q psy1534 31 LEVPVVMDLIQGDASLYQI-SHLSTVGDVTYVEILNDDTGKPRGSAIVEFQSPDLVRKAVNK 91 (587)
Q Consensus 31 ~~~~vfV~nlp~~~t~~~l-~~F~~~G~V~~v~i~~d~~g~skG~aFV~F~~~e~A~~Al~~ 91 (587)
..+.|||. .|.+.++.+| ++|++||+|.++...++ .| -||.|||.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SS---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CC---eEEEEEeCCHHHHHHHHhc
Confidence 45689997 7999999999 99999999999977654 22 6999999999999988754
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.41 E-value=0.044 Score=56.98 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=42.5
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy1534 159 INKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 159 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
.+.|+|. .|..+++.+|.++|++||.|.++...+++ .-|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 3689998 79999999999999999999999887654 36999999999998877643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.90 E-value=4.3 Score=42.86 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNN 222 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g 222 (587)
....++|+ +|..+...+|.++|+.||. .+|.++.+ ..|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 34566676 9999999999999999995 45666654 3699999999999999998853
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=79.39 E-value=11 Score=28.90 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCC
Q psy1534 515 ERDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT 575 (587)
Q Consensus 515 ~~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~ 575 (587)
..+-|.|-|+|..+-..++.-..+..|---+|+... |.|.+.|.+.++..-||.+|=+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--SCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--CeeEEEecCChHHHHHHHHHHhc
Confidence 356778999999999999999999999888898765 58999999999999999987443
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.45 E-value=6.2 Score=41.65 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=44.5
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRT 575 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~ 575 (587)
..++|. +|..+...||.++|+.||.|.- .- .+...++|.|.+++.|..+++.++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V-~w-iddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQI-SW-IDDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEE-EE-CSSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEE-EE-EcCCeEEEEECCHHHHHHHHHHHHhC
Confidence 355555 9999999999999999996532 22 23468999999999999999998643
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=74.07 E-value=9.4 Score=28.46 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=44.3
Q ss_pred eEEEe-CCCCCCChHHHHHHHhhcCCe-----eEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 518 TVVVK-NLPPTITWQELRDKFRNCGDI-----KFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 518 ~v~V~-~Lp~~~~~~~l~~~f~~~G~v-----~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
+++|. +--..+++-+|..++..-+.| -.+++... +.||+-... .+..+++.|++..+.|++++|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 45555 446788899999999977754 55566544 888887754 47789999999999999998875
No 405
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=52.92 E-value=26 Score=31.92 Aligned_cols=62 Identities=37% Similarity=0.711 Sum_probs=44.4
Q ss_pred hHHHHHHhhhccccceeEEEEeccCccceeeeeceeeeeecCCCCCCceeEecCCCCCCHHHHHHHHh
Q psy1534 264 PLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDKSSDENDAASVNTASKTDSTNAEKDKIG 331 (587)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~~~~~~~ai~ 331 (587)
.+.++..|+....+.+.+.++.+.++.+.+|+|.|++.+........ .....+..++.++|.
T Consensus 69 ~l~~l~~~L~~g~v~klvlvI~~~~~~~~lEr~~Fd~~~~~~~~~~~------~~~~~~~~ei~~eir 130 (206)
T 2vfx_A 69 VVEQLKDWLYKSSVQKLVVVISNIESGEVLERWQFDIESDKTAKDDS------APREKSQKAIQDEIR 130 (206)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEETTTCCEEEEEEEEEEECTTC---C------CCBSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEEEEEEEeCCCCceEEEEEEEeeccCCccccc------cCCCCCHHHHHHHHH
Confidence 46777788888899999999999999999999999998775433211 112344555666665
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=52.11 E-value=29 Score=25.03 Aligned_cols=59 Identities=5% Similarity=0.007 Sum_probs=49.6
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCc
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTR 576 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~ 576 (587)
..++.|.++.-..=...+...++. -.|..+.+....+.+.|+|++.++...||+. -|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~-~Gy~ 64 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA-AGYQ 64 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH-TTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH-cCCc
Confidence 357889999888888999999999 8899999987778899999977888888887 3554
No 407
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=42.62 E-value=67 Score=22.80 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=46.5
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHH
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDM 571 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~ 571 (587)
.++.|.++.-..=...+...++..-.|..+.+....+.+.|+|+ +.++...||+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 36778888877777889999999999999999887789999996 56788888887
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=42.60 E-value=52 Score=24.18 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHhcCC-----eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q psy1534 170 KVDEKKLREVFRLAGK-----VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISMLNNQNLFERRITVRMDR 236 (587)
Q Consensus 170 ~~te~~l~~~F~~~G~-----i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~a~ 236 (587)
.+...+|..++..-+. |-.|.|.. .|.||+-.. +.|.++++.|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4667777777775444 45566654 378998876 47888999999999999999988764
No 409
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.48 E-value=27 Score=31.69 Aligned_cols=41 Identities=32% Similarity=0.716 Sum_probs=36.0
Q ss_pred hHHHHHHhhhccccceeEEEEeccCccceeeeeceeeeeec
Q psy1534 264 PLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYDK 304 (587)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (587)
.+.++..|+....+.+.+.++.+.++.+.+|+|.|++.+..
T Consensus 67 ~l~~v~~wL~~g~v~klvlvI~~~~t~~~lEr~~Fdv~~~~ 107 (203)
T 4aez_B 67 IVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVD 107 (203)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEETTTCCEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhCCceEEEEEEEcCCCCceEEEEEEeccccC
Confidence 46677888888889999999999999999999999998744
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.95 E-value=50 Score=28.97 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=40.5
Q ss_pred eEEEeCCCC-C--------CChHHHHHHH--hhcCCeeEEEeecC---CCeEEEEEC-CHHHHHHHHHHhC
Q psy1534 518 TVVVKNLPP-T--------ITWQELRDKF--RNCGDIKFAEIKGK---GDIGLVRFD-SEWTAKRAIDMMD 573 (587)
Q Consensus 518 ~v~V~~Lp~-~--------~~~~~l~~~f--~~~G~v~~~~~~~~---~g~g~v~f~-~~~~a~~Ai~~l~ 573 (587)
.++|-|+|. . .+.++|++.| +.|..+...-+.-+ +|+++|+|. +-.-...|+..-+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHH
Confidence 789999997 2 4457999977 89988765555332 478999999 6666666665433
No 411
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=39.58 E-value=91 Score=21.43 Aligned_cols=59 Identities=8% Similarity=0.007 Sum_probs=45.7
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHHhCCCc
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDMMDRTR 576 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~l~g~~ 576 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|.|+ +.++...+|+.+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-G~~ 69 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQ-GYD 69 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHT-TCE
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc-CCC
Confidence 46788888766666778899999988999999887789999987 346667777764 543
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.48 E-value=1.3e+02 Score=23.02 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHHHHhcCCeeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy1534 158 LINKVFVANLDYKVDEKKLREVFRLAGKVENVEIALDKDGKSRGFGTVEFDHPVEAVQSISML 220 (587)
Q Consensus 158 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~l 220 (587)
..|-|.|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++..-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHH
Confidence 467889999999999888887777777666776653 56999999999999999877
No 413
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.26 E-value=41 Score=26.56 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=37.1
Q ss_pred CCCCCChHHHHHHHhhc-C----CeeEEEeecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 524 LPPTITWQELRDKFRNC-G----DIKFAEIKGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 524 Lp~~~~~~~l~~~f~~~-G----~v~~~~~~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
-+.+.||+||..++... + .|.|.+=..+ -|...+..+.+.|++.. .-.|+.|++..
T Consensus 32 ~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD----~V~i~Sq~E~eEAlkva---~k~~n~L~m~V 92 (101)
T 1wj6_A 32 DPENTTWADIEAMVKVSFDLNTIQIKYLDEENE----EVSINSQGEYEEALKMA---VKQGNQLQMQV 92 (101)
T ss_dssp CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSC----EECCCSHHHHHHHHHHH---HHHTSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEEecCCCC----EEEEecHHHHHHHHHHh---ccCCCEEEEEE
Confidence 35599999999999743 3 3445444444 67788899999998841 22255555543
No 414
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=35.97 E-value=1.1e+02 Score=21.20 Aligned_cols=55 Identities=5% Similarity=0.070 Sum_probs=45.9
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC---CHHHHHHHHHH
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD---SEWTAKRAIDM 571 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~---~~~~a~~Ai~~ 571 (587)
.++.|.++.-..-...+...++....|..+.+....+...|+|. +.++...+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 36788888887778899999999999999999888889999985 45677777776
No 415
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=33.11 E-value=1.2e+02 Score=20.74 Aligned_cols=58 Identities=3% Similarity=0.033 Sum_probs=44.9
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC---HHHHHHHHHHhCCC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS---EWTAKRAIDMMDRT 575 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~---~~~a~~Ai~~l~g~ 575 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|+|+. .++...+|+.+ |+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~-G~ 65 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERA-GY 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHH-TC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHc-CC
Confidence 367788887766678899999999999999998877899999973 45566677664 44
No 416
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=32.79 E-value=1e+02 Score=20.67 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=42.3
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC---CHHHHHHHHHHh
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD---SEWTAKRAIDMM 572 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~---~~~~a~~Ai~~l 572 (587)
++.|.++.-..-...++..+...-.|..+.+....+...|+|+ +.++...+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHc
Confidence 4556677666566788899999888999999887789999997 456667777764
No 417
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.27 E-value=1.2e+02 Score=23.13 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=40.4
Q ss_pred EEEecCCCCCcHHHHHHHHHh-cCC-eeEEEEeeCCCCCcceEEEEEecCHHHHHHHHHH
Q psy1534 162 VFVANLDYKVDEKKLREVFRL-AGK-VENVEIALDKDGKSRGFGTVEFDHPVEAVQSISM 219 (587)
Q Consensus 162 l~V~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Al~~ 219 (587)
-|+-..+...+..+|++.++. |+. |..|..+.-+.+. .-|+|++....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHHh
Confidence 344557889999999999987 553 7788777655443 3599999887777665443
No 418
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=31.67 E-value=58 Score=24.98 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHhhcCCeeEEEe-----ecCCCeEEEEECCHHHHHHHHHHhCCCcccCceEEEEE
Q psy1534 525 PPTITWQELRDKFRNCGDIKFAEI-----KGKGDIGLVRFDSEWTAKRAIDMMDRTRIDGKIIDVTF 586 (587)
Q Consensus 525 p~~~~~~~l~~~f~~~G~v~~~~~-----~~~~g~g~v~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~ 586 (587)
+.+.||+||..++...=.+....| ..+ -|...|..+.+.|++-. .-.|+.|++..
T Consensus 25 ~~~~tweel~~mvk~~f~L~~~~ikY~DEenD----~v~i~Sq~E~eEAlkva---~k~~n~L~m~v 84 (87)
T 2bkf_A 25 PENTTWADIEAMVKVSFDLNTIQIKYLDEENE----EVSINSQGEYEEALKMA---VKQGNQLQMQV 84 (87)
T ss_dssp GGGCCHHHHHHHHHHHHTCSSEEEEEECTTSC----EEEECSHHHHHHHHHHH---HHTTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEEEcCCCC----EEEEecHHHHHHHHHHh---ccCCCEEEEEE
Confidence 449999999999975443333333 333 67888899999998842 22355555544
No 419
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=30.86 E-value=1.4e+02 Score=21.05 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC----HHHHHHHHHHhCCCc
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS----EWTAKRAIDMMDRTR 576 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~----~~~a~~Ai~~l~g~~ 576 (587)
..++.|.++.-..-...+...+...-.|..+.+....+...|+|+. .++...+|+.+ |+.
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-Gy~ 72 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM-GFD 72 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH-CCC
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC-CCc
Confidence 3578888998888888899999999999888887777899999974 46677778775 543
No 420
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=30.21 E-value=1.3e+02 Score=20.28 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=45.3
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHHhCCC
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDMMDRT 575 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~l~g~ 575 (587)
++.|.++.-..-...+...+...-.|..+.+....+...|+|+ +.++...+|+.+ |+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-G~ 63 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINEL-GY 63 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTT-SS
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 6778888777777889999999988999999887789999997 345666777663 44
No 421
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=29.51 E-value=1.6e+02 Score=21.29 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=48.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHHhCCCc
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDMMDRTR 576 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~l~g~~ 576 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|+|+ +.++...+|+.+ |+.
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-Gy~ 73 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM-GFP 73 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT-TCC
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc-CCc
Confidence 47788899877777889999999999999999887789999996 456777888774 553
No 422
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=28.63 E-value=1.4e+02 Score=20.27 Aligned_cols=57 Identities=4% Similarity=-0.010 Sum_probs=45.2
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC---HHHHHHHHHHhCCC
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS---EWTAKRAIDMMDRT 575 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~---~~~a~~Ai~~l~g~ 575 (587)
++.|.++.-..-...++..+...-.|..+.+....+...|+|+. .++...+|+.+ |+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~-Gy 62 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGL-GY 62 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTT-TS
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHC-CC
Confidence 57788887776778899999999899999998877899999974 45666777663 44
No 423
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=28.51 E-value=1.6e+02 Score=23.15 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=48.8
Q ss_pred CCeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC----HHHHHHHHHHhCCCcc
Q psy1534 516 RDTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS----EWTAKRAIDMMDRTRI 577 (587)
Q Consensus 516 ~~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~----~~~a~~Ai~~l~g~~~ 577 (587)
..++.|.++.-..-...+...+...-.|..+.+....+...|+|+. .++...+|+.+ |+..
T Consensus 9 ~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~-Gy~~ 73 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL-GYTL 73 (111)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT-TCCE
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc-CCee
Confidence 3467888998877788899999999899999998877899999983 46667777764 5543
No 424
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=27.94 E-value=1.5e+02 Score=20.28 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=46.0
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHHhCCC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDMMDRT 575 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~l~g~ 575 (587)
.++.|.++....-...+...+...-.|..+.+....+...|+|+ +.++...+|+.+ |+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-G~ 66 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA-GY 66 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT-TC
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc-CC
Confidence 36777788777777889999999999999999887789999996 356677778774 54
No 425
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.32 E-value=1e+02 Score=26.96 Aligned_cols=48 Identities=29% Similarity=0.331 Sum_probs=35.4
Q ss_pred EEEEecCCC-C--------CcHHHHHHHH--HhcCCeeEEEEeeCCCCCcceEEEEEecCH
Q psy1534 161 KVFVANLDY-K--------VDEKKLREVF--RLAGKVENVEIALDKDGKSRGFGTVEFDHP 210 (587)
Q Consensus 161 ~l~V~nLp~-~--------~te~~l~~~F--~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 210 (587)
++.|-|+|. . ....+|++.| +.|..+ .|+.+.++.| ++|++.|+|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCC
Confidence 677888887 2 3347899977 889664 5776776655 578999999874
No 426
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=25.36 E-value=1.7e+02 Score=20.14 Aligned_cols=56 Identities=9% Similarity=0.200 Sum_probs=45.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC----HHHHHHHHHHh
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS----EWTAKRAIDMM 572 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~----~~~a~~Ai~~l 572 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|.|+. .++...+|+.+
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 478899998877788899999999899999998877899999974 34456666653
No 427
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=24.86 E-value=1.8e+02 Score=20.18 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=45.7
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC----HHHHHHHHHHhCCCc
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS----EWTAKRAIDMMDRTR 576 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~----~~~a~~Ai~~l~g~~ 576 (587)
++.|.++.-..-...+...+...-.|..+.+....+...|.|+. .++...+|+.+ |+.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-Gy~ 66 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM-GFD 66 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT-TCC
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc-CCc
Confidence 67788887666667889999999899999998877899999973 56677788774 553
No 428
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=24.82 E-value=1.7e+02 Score=20.20 Aligned_cols=53 Identities=9% Similarity=-0.010 Sum_probs=43.4
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC-CHHHHHHHHHH
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD-SEWTAKRAIDM 571 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~-~~~~a~~Ai~~ 571 (587)
.++.| ++.-..=...+...++....| .+++....+.+.|++. +.++...||+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHH
Confidence 35667 777666678889999998889 9999888789999986 77888888886
No 429
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=23.39 E-value=1.4e+02 Score=20.46 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=44.9
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC----HHHHHHHHHHhCCC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS----EWTAKRAIDMMDRT 575 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~----~~~a~~Ai~~l~g~ 575 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|.|+. .++...+|+.+ |+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-G~ 66 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM-GF 66 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH-TC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC-CC
Confidence 367788886665667789999999889889998877899999973 46667777774 44
No 430
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=23.21 E-value=1.7e+02 Score=19.83 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=44.3
Q ss_pred eEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC---CHHHHHHHHHHhCCC
Q psy1534 518 TVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD---SEWTAKRAIDMMDRT 575 (587)
Q Consensus 518 ~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~---~~~~a~~Ai~~l~g~ 575 (587)
++.|.++.-..-...+...+...-.|..+.+....+...|+|+ +.++...+|+.+ |+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~-G~ 64 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC-GF 64 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH-TC
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC-CC
Confidence 6778888766666778899999988999999887789999997 446667777764 44
No 431
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=22.39 E-value=83 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=33.8
Q ss_pred hHHHHHHhhhccccceeEEEEeccCccceeeeeceeeeee
Q psy1534 264 PLQDVANWLLQEKVQKLSLIISNRNTKEVLERWDFKLQYD 303 (587)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (587)
.+.++..++....+.+++.++.+.++ +.+|+|.|.+...
T Consensus 83 ~l~~v~~~L~~g~v~klvlvI~~~~~-e~lER~~Fdi~~~ 121 (227)
T 3abd_A 83 TLHCVKPLLEKNDVEKVVVVILDKEH-RPVEKFVFEITQP 121 (227)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEECTTS-CEEEEEEEEEECC
T ss_pred HHHHHHHHHHhCceeEEEEEEEcCCC-cEEEEEEEEeecc
Confidence 46778888888889999999999877 9999999998754
No 432
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=21.75 E-value=2e+02 Score=19.77 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=46.4
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEECC--HHHHHHHHHHhCCC
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFDS--EWTAKRAIDMMDRT 575 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~~--~~~a~~Ai~~l~g~ 575 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|+|+. .++...+|+.+ |+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~-Gy 64 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA-GY 64 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH-TC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc-CC
Confidence 367888997777778899999999899999998877899999985 45566777764 44
No 433
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=20.38 E-value=1.7e+02 Score=21.69 Aligned_cols=56 Identities=7% Similarity=0.149 Sum_probs=45.6
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHHh
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDMM 572 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~l 572 (587)
.++.|.++....-...+...+...-.|..+.+....+.+.|+|+ +.++...+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 36778888766666789999999989999999888889999996 456778888876
No 434
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=20.37 E-value=1.8e+02 Score=20.37 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=46.1
Q ss_pred CeEEEeCCCCCCChHHHHHHHhhcCCeeEEEeecCCCeEEEEEC----CHHHHHHHHHHhCCCc
Q psy1534 517 DTVVVKNLPPTITWQELRDKFRNCGDIKFAEIKGKGDIGLVRFD----SEWTAKRAIDMMDRTR 576 (587)
Q Consensus 517 ~~v~V~~Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~g~g~v~f~----~~~~a~~Ai~~l~g~~ 576 (587)
.++.|.++.-..-...+...+...-.|..+.+....+...|+|+ +.++...+|+.+ |+.
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~-Gy~ 67 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL-GFG 67 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH-TSC
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc-CCc
Confidence 36778888777777889999999988988888877789999996 346677778774 543
Done!